[M::mm_idx_gen::41.111*1.68] collected minimizers
[M::mm_idx_gen::69.767*1.79] sorted minimizers
[M::main::69.767*1.79] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::70.220*1.79] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::70.413*1.79] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::99.330*1.84] mapped 4000 sequences
[M::worker_pipeline::126.372*1.87] mapped 4000 sequences
[M::worker_pipeline::155.279*1.89] mapped 4000 sequences
[M::worker_pipeline::180.970*1.90] mapped 4000 sequences
[M::worker_pipeline::208.028*1.91] mapped 4000 sequences
[M::worker_pipeline::233.707*1.92] mapped 4000 sequences
[M::worker_pipeline::259.132*1.92] mapped 4000 sequences
[M::worker_pipeline::285.460*1.93] mapped 4000 sequences
[M::worker_pipeline::313.156*1.93] mapped 4000 sequences
[M::worker_pipeline::341.149*1.93] mapped 4000 sequences
[M::worker_pipeline::366.582*1.94] mapped 4000 sequences
[M::worker_pipeline::393.023*1.94] mapped 4000 sequences
[M::worker_pipeline::417.975*1.94] mapped 4000 sequences
[M::worker_pipeline::444.452*1.94] mapped 4000 sequences
[M::worker_pipeline::472.551*1.95] mapped 4000 sequences
[M::worker_pipeline::499.235*1.95] mapped 4000 sequences
[M::worker_pipeline::525.220*1.95] mapped 4000 sequences
[M::worker_pipeline::554.334*1.95] mapped 4000 sequences
[M::worker_pipeline::580.040*1.95] mapped 4000 sequences
[M::worker_pipeline::608.253*1.95] mapped 4000 sequences
[M::worker_pipeline::635.417*1.95] mapped 4000 sequences
[M::worker_pipeline::667.442*1.95] mapped 4000 sequences
[M::worker_pipeline::697.680*1.96] mapped 4000 sequences
[M::worker_pipeline::724.910*1.96] mapped 4000 sequences
[M::worker_pipeline::750.809*1.96] mapped 4000 sequences
[M::worker_pipeline::777.839*1.96] mapped 4000 sequences
[M::worker_pipeline::803.212*1.96] mapped 4000 sequences
[M::worker_pipeline::830.299*1.96] mapped 4000 sequences
[M::worker_pipeline::857.790*1.96] mapped 4000 sequences
[M::worker_pipeline::905.378*1.95] mapped 4000 sequences
[M::worker_pipeline::930.760*1.95] mapped 4000 sequences
[M::worker_pipeline::962.967*1.96] mapped 4000 sequences
[M::worker_pipeline::991.493*1.96] mapped 4000 sequences
[M::worker_pipeline::1018.585*1.96] mapped 4000 sequences
[M::worker_pipeline::1046.721*1.96] mapped 4000 sequences
[M::worker_pipeline::1074.833*1.96] mapped 4000 sequences
[M::worker_pipeline::1100.819*1.96] mapped 4000 sequences
[M::worker_pipeline::1126.777*1.96] mapped 4000 sequences
[M::worker_pipeline::1152.948*1.96] mapped 4000 sequences
[M::worker_pipeline::1179.019*1.96] mapped 4000 sequences
[M::worker_pipeline::1205.061*1.96] mapped 3526 sequences
[M::worker_pipeline::1227.608*1.96] mapped 3155 sequences
[M::worker_pipeline::1255.678*1.96] mapped 4000 sequences
[M::worker_pipeline::1284.515*1.96] mapped 4000 sequences
[M::worker_pipeline::1312.173*1.96] mapped 4000 sequences
[M::worker_pipeline::1337.333*1.96] mapped 4000 sequences
[M::worker_pipeline::1364.212*1.96] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t2 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep2/batch9.fast5.fastm.gz
[M::main] Real time: 1364.368 sec; CPU: 2676.317 sec; Peak RSS: 8.874 GB