[M::mm_idx_gen::41.263*1.68] collected minimizers
[M::mm_idx_gen::69.821*1.80] sorted minimizers
[M::main::69.821*1.80] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::70.268*1.79] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::70.468*1.79] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::94.511*1.84] mapped 4000 sequences
[M::worker_pipeline::120.204*1.87] mapped 4000 sequences
[M::worker_pipeline::145.674*1.88] mapped 4000 sequences
[M::worker_pipeline::170.027*1.90] mapped 4000 sequences
[M::worker_pipeline::196.146*1.90] mapped 4000 sequences
[M::worker_pipeline::221.505*1.91] mapped 4000 sequences
[M::worker_pipeline::248.225*1.92] mapped 4000 sequences
[M::worker_pipeline::273.294*1.92] mapped 4000 sequences
[M::worker_pipeline::302.455*1.93] mapped 4000 sequences
[M::worker_pipeline::326.816*1.93] mapped 4000 sequences
[M::worker_pipeline::350.764*1.93] mapped 4000 sequences
[M::worker_pipeline::376.452*1.94] mapped 4000 sequences
[M::worker_pipeline::401.286*1.94] mapped 4000 sequences
[M::worker_pipeline::424.761*1.94] mapped 4000 sequences
[M::worker_pipeline::449.564*1.94] mapped 4000 sequences
[M::worker_pipeline::473.692*1.94] mapped 4000 sequences
[M::worker_pipeline::497.831*1.95] mapped 4000 sequences
[M::worker_pipeline::522.517*1.95] mapped 4000 sequences
[M::worker_pipeline::547.525*1.95] mapped 4000 sequences
[M::worker_pipeline::572.386*1.95] mapped 4000 sequences
[M::worker_pipeline::597.237*1.95] mapped 4000 sequences
[M::worker_pipeline::623.698*1.95] mapped 4000 sequences
[M::worker_pipeline::659.579*1.95] mapped 4000 sequences
[M::worker_pipeline::686.782*1.95] mapped 4000 sequences
[M::worker_pipeline::770.201*1.94] mapped 4000 sequences
[M::worker_pipeline::794.887*1.94] mapped 4000 sequences
[M::worker_pipeline::818.612*1.94] mapped 4000 sequences
[M::worker_pipeline::844.458*1.94] mapped 4000 sequences
[M::worker_pipeline::868.991*1.94] mapped 4000 sequences
[M::worker_pipeline::897.875*1.94] mapped 4000 sequences
[M::worker_pipeline::933.296*1.94] mapped 4000 sequences
[M::worker_pipeline::959.757*1.94] mapped 4000 sequences
[M::worker_pipeline::993.858*1.95] mapped 4000 sequences
[M::worker_pipeline::1017.636*1.95] mapped 4000 sequences
[M::worker_pipeline::1042.428*1.95] mapped 4000 sequences
[M::worker_pipeline::1066.561*1.95] mapped 4000 sequences
[M::worker_pipeline::1091.085*1.95] mapped 4000 sequences
[M::worker_pipeline::1114.781*1.95] mapped 4000 sequences
[M::worker_pipeline::1139.817*1.95] mapped 4000 sequences
[M::worker_pipeline::1168.285*1.95] mapped 4000 sequences
[M::worker_pipeline::1181.375*1.95] mapped 2114 sequences
[M::worker_pipeline::1198.195*1.95] mapped 2571 sequences
[M::worker_pipeline::1223.029*1.95] mapped 4000 sequences
[M::worker_pipeline::1247.692*1.95] mapped 4000 sequences
[M::worker_pipeline::1275.826*1.95] mapped 4000 sequences
[M::worker_pipeline::1302.704*1.95] mapped 4000 sequences
[M::worker_pipeline::1330.326*1.95] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t2 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_6hpf_Rep1/batch9.fast5.fastm.gz
[M::main] Real time: 1330.480 sec; CPU: 2595.039 sec; Peak RSS: 8.874 GB