[M::mm_idx_gen::42.537*1.68] collected minimizers
[M::mm_idx_gen::71.904*1.79] sorted minimizers
[M::main::71.905*1.79] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::72.351*1.79] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::72.545*1.78] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::103.910*1.84] mapped 4000 sequences
[M::worker_pipeline::136.279*1.87] mapped 4000 sequences
[M::worker_pipeline::166.977*1.89] mapped 4000 sequences
[M::worker_pipeline::196.944*1.90] mapped 4000 sequences
[M::worker_pipeline::227.066*1.91] mapped 4000 sequences
[M::worker_pipeline::257.885*1.91] mapped 4000 sequences
[M::worker_pipeline::289.624*1.92] mapped 4000 sequences
[M::worker_pipeline::320.115*1.93] mapped 4000 sequences
[M::worker_pipeline::352.302*1.93] mapped 4000 sequences
[M::worker_pipeline::382.709*1.94] mapped 4000 sequences
[M::worker_pipeline::412.397*1.94] mapped 4000 sequences
[M::worker_pipeline::442.099*1.94] mapped 4000 sequences
[M::worker_pipeline::472.307*1.94] mapped 4000 sequences
[M::worker_pipeline::506.999*1.95] mapped 4000 sequences
[M::worker_pipeline::538.193*1.95] mapped 4000 sequences
[M::worker_pipeline::566.597*1.95] mapped 4000 sequences
[M::worker_pipeline::595.958*1.95] mapped 4000 sequences
[M::worker_pipeline::626.189*1.95] mapped 4000 sequences
[M::worker_pipeline::655.402*1.95] mapped 4000 sequences
[M::worker_pipeline::688.188*1.95] mapped 4000 sequences
[M::worker_pipeline::717.629*1.96] mapped 4000 sequences
[M::worker_pipeline::748.041*1.96] mapped 4000 sequences
[M::worker_pipeline::776.964*1.96] mapped 4000 sequences
[M::worker_pipeline::810.119*1.96] mapped 4000 sequences
[M::worker_pipeline::840.131*1.96] mapped 4000 sequences
[M::worker_pipeline::870.090*1.96] mapped 4000 sequences
[M::worker_pipeline::904.661*1.96] mapped 4000 sequences
[M::worker_pipeline::936.105*1.96] mapped 4000 sequences
[M::worker_pipeline::965.143*1.96] mapped 4000 sequences
[M::worker_pipeline::992.198*1.96] mapped 4000 sequences
[M::worker_pipeline::1027.317*1.96] mapped 4000 sequences
[M::worker_pipeline::1061.599*1.96] mapped 4000 sequences
[M::worker_pipeline::1091.839*1.96] mapped 4000 sequences
[M::worker_pipeline::1121.969*1.96] mapped 4000 sequences
[M::worker_pipeline::1152.038*1.96] mapped 4000 sequences
[M::worker_pipeline::1183.595*1.96] mapped 4000 sequences
[M::worker_pipeline::1214.712*1.96] mapped 4000 sequences
[M::worker_pipeline::1245.405*1.96] mapped 4000 sequences
[M::worker_pipeline::1275.703*1.96] mapped 4000 sequences
[M::worker_pipeline::1304.005*1.96] mapped 4000 sequences
[M::worker_pipeline::1334.839*1.97] mapped 4000 sequences
[M::worker_pipeline::1365.082*1.97] mapped 4000 sequences
[M::worker_pipeline::1394.422*1.97] mapped 4000 sequences
[M::worker_pipeline::1423.605*1.97] mapped 4000 sequences
[M::worker_pipeline::1453.328*1.97] mapped 4000 sequences
[M::worker_pipeline::1484.489*1.97] mapped 4000 sequences
[M::worker_pipeline::1514.704*1.97] mapped 4000 sequences
[M::worker_pipeline::1544.769*1.97] mapped 4000 sequences
[M::worker_pipeline::1572.531*1.97] mapped 4000 sequences
[M::worker_pipeline::1602.109*1.97] mapped 4000 sequences
[M::worker_pipeline::1631.737*1.97] mapped 4000 sequences
[M::worker_pipeline::1662.498*1.97] mapped 4000 sequences
[M::worker_pipeline::1693.714*1.97] mapped 4000 sequences
[M::worker_pipeline::1722.129*1.97] mapped 4000 sequences
[M::worker_pipeline::1749.972*1.97] mapped 4000 sequences
[M::worker_pipeline::1782.177*1.97] mapped 4000 sequences
[M::worker_pipeline::1809.367*1.97] mapped 4000 sequences
[M::worker_pipeline::1839.573*1.97] mapped 4000 sequences
[M::worker_pipeline::1867.599*1.97] mapped 4000 sequences
[M::worker_pipeline::1898.321*1.97] mapped 4000 sequences
[M::worker_pipeline::1926.506*1.97] mapped 3900 sequences
[M::worker_pipeline::1950.270*1.97] mapped 3087 sequences
[M::worker_pipeline::1974.280*1.97] mapped 3168 sequences
[M::worker_pipeline::1996.122*1.97] mapped 2961 sequences
[M::worker_pipeline::2021.405*1.97] mapped 3417 sequences
[M::worker_pipeline::2053.914*1.97] mapped 4000 sequences
[M::worker_pipeline::2082.125*1.97] mapped 4000 sequences
[M::worker_pipeline::2111.646*1.97] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t2 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch47.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch48.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch49.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch50.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch51.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch52.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch53.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch54.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch55.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch56.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch57.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch58.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch59.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch60.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch61.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch62.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch63.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch64.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch65.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch66.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch67.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep2/batch9.fast5.fastm.gz
[M::main] Real time: 2112.010 sec; CPU: 4158.388 sec; Peak RSS: 8.874 GB