[M::mm_idx_gen::45.966*1.59] collected minimizers
[M::mm_idx_gen::75.002*1.73] sorted minimizers
[M::main::75.002*1.73] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::75.471*1.73] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::75.670*1.73] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::104.626*1.80] mapped 4000 sequences
[M::worker_pipeline::133.900*1.83] mapped 4000 sequences
[M::worker_pipeline::160.797*1.86] mapped 4000 sequences
[M::worker_pipeline::191.002*1.87] mapped 4000 sequences
[M::worker_pipeline::220.861*1.89] mapped 4000 sequences
[M::worker_pipeline::249.109*1.89] mapped 4000 sequences
[M::worker_pipeline::277.847*1.90] mapped 4000 sequences
[M::worker_pipeline::306.272*1.91] mapped 4000 sequences
[M::worker_pipeline::334.097*1.92] mapped 4000 sequences
[M::worker_pipeline::363.671*1.92] mapped 4000 sequences
[M::worker_pipeline::392.286*1.93] mapped 4000 sequences
[M::worker_pipeline::420.534*1.93] mapped 4000 sequences
[M::worker_pipeline::449.146*1.93] mapped 4000 sequences
[M::worker_pipeline::478.400*1.93] mapped 4000 sequences
[M::worker_pipeline::505.165*1.94] mapped 4000 sequences
[M::worker_pipeline::534.873*1.94] mapped 4000 sequences
[M::worker_pipeline::564.546*1.94] mapped 4000 sequences
[M::worker_pipeline::595.280*1.94] mapped 4000 sequences
[M::worker_pipeline::622.644*1.94] mapped 4000 sequences
[M::worker_pipeline::651.683*1.95] mapped 4000 sequences
[M::worker_pipeline::682.036*1.95] mapped 4000 sequences
[M::worker_pipeline::709.902*1.95] mapped 4000 sequences
[M::worker_pipeline::739.227*1.95] mapped 4000 sequences
[M::worker_pipeline::768.349*1.95] mapped 4000 sequences
[M::worker_pipeline::797.209*1.95] mapped 4000 sequences
[M::worker_pipeline::826.611*1.95] mapped 4000 sequences
[M::worker_pipeline::857.098*1.95] mapped 4000 sequences
[M::worker_pipeline::885.444*1.95] mapped 4000 sequences
[M::worker_pipeline::912.830*1.95] mapped 4000 sequences
[M::worker_pipeline::941.592*1.95] mapped 4000 sequences
[M::worker_pipeline::972.712*1.95] mapped 4000 sequences
[M::worker_pipeline::1002.616*1.95] mapped 4000 sequences
[M::worker_pipeline::1038.799*1.95] mapped 4000 sequences
[M::worker_pipeline::1068.294*1.96] mapped 4000 sequences
[M::worker_pipeline::1101.475*1.96] mapped 4000 sequences
[M::worker_pipeline::1130.326*1.96] mapped 4000 sequences
[M::worker_pipeline::1159.833*1.96] mapped 4000 sequences
[M::worker_pipeline::1188.134*1.96] mapped 4000 sequences
[M::worker_pipeline::1215.992*1.96] mapped 4000 sequences
[M::worker_pipeline::1241.610*1.96] mapped 4000 sequences
[M::worker_pipeline::1273.097*1.96] mapped 4000 sequences
[M::worker_pipeline::1303.065*1.96] mapped 4000 sequences
[M::worker_pipeline::1333.720*1.96] mapped 4000 sequences
[M::worker_pipeline::1362.366*1.96] mapped 4000 sequences
[M::worker_pipeline::1387.904*1.96] mapped 4000 sequences
[M::worker_pipeline::1417.213*1.96] mapped 4000 sequences
[M::worker_pipeline::1446.317*1.96] mapped 4000 sequences
[M::worker_pipeline::1475.206*1.96] mapped 4000 sequences
[M::worker_pipeline::1504.897*1.96] mapped 4000 sequences
[M::worker_pipeline::1533.580*1.96] mapped 4000 sequences
[M::worker_pipeline::1562.482*1.96] mapped 4000 sequences
[M::worker_pipeline::1591.332*1.96] mapped 4000 sequences
[M::worker_pipeline::1620.569*1.96] mapped 4000 sequences
[M::worker_pipeline::1648.852*1.96] mapped 4000 sequences
[M::worker_pipeline::1676.086*1.96] mapped 4000 sequences
[M::worker_pipeline::1703.371*1.96] mapped 4000 sequences
[M::worker_pipeline::1729.235*1.96] mapped 4000 sequences
[M::worker_pipeline::1757.239*1.96] mapped 4000 sequences
[M::worker_pipeline::1786.211*1.96] mapped 4000 sequences
[M::worker_pipeline::1814.507*1.96] mapped 4000 sequences
[M::worker_pipeline::1843.063*1.96] mapped 4000 sequences
[M::worker_pipeline::1872.942*1.96] mapped 4000 sequences
[M::worker_pipeline::1901.877*1.96] mapped 4000 sequences
[M::worker_pipeline::1929.776*1.96] mapped 3937 sequences
[M::worker_pipeline::1959.482*1.96] mapped 4000 sequences
[M::worker_pipeline::1989.363*1.96] mapped 4000 sequences
[M::worker_pipeline::2017.812*1.96] mapped 4000 sequences
[M::worker_pipeline::2047.258*1.96] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t2 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch47.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch48.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch49.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch50.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch51.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch52.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch53.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch54.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch55.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch56.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch57.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch58.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch59.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch60.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch61.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch62.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch63.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch64.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch65.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch66.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch67.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch7.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch8.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_ythdf23KO/ModPhred_RawOutput_WT-matched/reads/WT-matched_2hpf_Rep1/batch9.fast5.fastm.gz
[M::main] Real time: 2047.621 sec; CPU: 4020.478 sec; Peak RSS: 8.875 GB