[M::mm_idx_gen::33.926*1.97] collected minimizers
[M::mm_idx_gen::43.691*2.77] sorted minimizers
[M::main::43.691*2.77] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::44.105*2.76] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::44.302*2.75] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::50.861*3.12] mapped 4000 sequences
[M::worker_pipeline::57.199*3.40] mapped 4000 sequences
[M::worker_pipeline::63.289*3.62] mapped 4000 sequences
[M::worker_pipeline::69.514*3.80] mapped 4000 sequences
[M::worker_pipeline::76.186*3.95] mapped 4000 sequences
[M::worker_pipeline::82.345*4.09] mapped 4000 sequences
[M::worker_pipeline::88.599*4.20] mapped 4000 sequences
[M::worker_pipeline::94.875*4.30] mapped 4000 sequences
[M::worker_pipeline::101.702*4.39] mapped 4000 sequences
[M::worker_pipeline::106.425*4.45] mapped 2653 sequences
[M::worker_pipeline::113.139*4.52] mapped 4000 sequences
[M::worker_pipeline::119.299*4.58] mapped 4000 sequences
[M::worker_pipeline::125.896*4.64] mapped 4000 sequences
[M::worker_pipeline::132.104*4.69] mapped 4000 sequences
[M::worker_pipeline::138.245*4.73] mapped 4000 sequences
[M::worker_pipeline::144.857*4.77] mapped 4000 sequences
[M::worker_pipeline::151.077*4.81] mapped 4000 sequences
[M::worker_pipeline::157.207*4.85] mapped 4000 sequences
[M::worker_pipeline::163.146*4.88] mapped 4000 sequences
[M::worker_pipeline::168.916*4.91] mapped 4000 sequences
[M::worker_pipeline::175.286*4.94] mapped 4000 sequences
[M::worker_pipeline::181.517*4.96] mapped 4000 sequences
[M::worker_pipeline::187.652*4.99] mapped 4000 sequences
[M::worker_pipeline::194.401*5.00] mapped 4000 sequences
[M::worker_pipeline::200.767*5.02] mapped 4000 sequences
[M::worker_pipeline::209.909*4.99] mapped 4000 sequences
[M::worker_pipeline::215.941*5.01] mapped 4000 sequences
[M::worker_pipeline::222.039*5.03] mapped 4000 sequences
[M::worker_pipeline::228.255*5.04] mapped 4000 sequences
[M::worker_pipeline::235.019*5.06] mapped 4000 sequences
[M::worker_pipeline::241.130*5.08] mapped 4000 sequences
[M::worker_pipeline::247.392*5.09] mapped 4000 sequences
[M::worker_pipeline::253.956*5.11] mapped 4000 sequences
[M::worker_pipeline::260.214*5.12] mapped 4000 sequences
[M::worker_pipeline::267.102*5.13] mapped 4000 sequences
[M::worker_pipeline::273.710*5.14] mapped 4000 sequences
[M::worker_pipeline::279.984*5.16] mapped 4000 sequences
[M::worker_pipeline::286.415*5.17] mapped 4000 sequences
[M::worker_pipeline::293.322*5.18] mapped 4000 sequences
[M::worker_pipeline::299.713*5.20] mapped 4000 sequences
[M::worker_pipeline::307.081*5.20] mapped 4000 sequences
[M::worker_pipeline::313.495*5.21] mapped 4000 sequences
[M::worker_pipeline::319.544*5.22] mapped 4000 sequences
[M::worker_pipeline::325.937*5.23] mapped 4000 sequences
[M::worker_pipeline::332.253*5.24] mapped 4000 sequences
[M::worker_pipeline::338.920*5.25] mapped 4000 sequences
[M::worker_pipeline::345.124*5.26] mapped 4000 sequences
[M::worker_pipeline::351.320*5.27] mapped 4000 sequences
[M::worker_pipeline::357.563*5.27] mapped 4000 sequences
[M::worker_pipeline::364.001*5.28] mapped 4000 sequences
[M::worker_pipeline::370.042*5.29] mapped 4000 sequences
[M::worker_pipeline::376.681*5.30] mapped 4000 sequences
[M::worker_pipeline::383.409*5.30] mapped 4000 sequences
[M::worker_pipeline::389.687*5.31] mapped 4000 sequences
[M::worker_pipeline::395.898*5.32] mapped 4000 sequences
[M::worker_pipeline::402.302*5.32] mapped 4000 sequences
[M::worker_pipeline::408.755*5.33] mapped 4000 sequences
[M::worker_pipeline::415.613*5.33] mapped 4000 sequences
[M::worker_pipeline::421.643*5.34] mapped 4000 sequences
[M::worker_pipeline::427.581*5.34] mapped 4000 sequences
[M::worker_pipeline::434.242*5.35] mapped 4000 sequences
[M::worker_pipeline::441.556*5.35] mapped 4000 sequences
[M::worker_pipeline::447.552*5.35] mapped 4000 sequences
[M::worker_pipeline::454.016*5.35] mapped 4000 sequences
[M::worker_pipeline::460.189*5.36] mapped 4000 sequences
[M::worker_pipeline::466.841*5.36] mapped 4000 sequences
[M::worker_pipeline::473.066*5.36] mapped 4000 sequences
[M::worker_pipeline::480.067*5.37] mapped 4000 sequences
[M::worker_pipeline::486.034*5.37] mapped 4000 sequences
[M::worker_pipeline::492.881*5.38] mapped 4000 sequences
[M::worker_pipeline::501.177*5.37] mapped 4000 sequences
[M::worker_pipeline::507.836*5.37] mapped 4000 sequences
[M::worker_pipeline::514.107*5.37] mapped 4000 sequences
[M::worker_pipeline::520.191*5.38] mapped 4000 sequences
[M::worker_pipeline::526.478*5.38] mapped 4000 sequences
[M::worker_pipeline::532.367*5.39] mapped 4000 sequences
[M::worker_pipeline::538.761*5.39] mapped 4000 sequences
[M::worker_pipeline::545.308*5.39] mapped 4000 sequences
[M::worker_pipeline::553.077*5.39] mapped 4000 sequences
[M::worker_pipeline::559.199*5.39] mapped 4000 sequences
[M::worker_pipeline::565.401*5.39] mapped 4000 sequences
[M::worker_pipeline::571.690*5.40] mapped 4000 sequences
[M::worker_pipeline::577.795*5.40] mapped 4000 sequences
[M::worker_pipeline::583.838*5.40] mapped 4000 sequences
[M::worker_pipeline::590.400*5.41] mapped 4000 sequences
[M::worker_pipeline::596.748*5.41] mapped 4000 sequences
[M::worker_pipeline::603.337*5.41] mapped 4000 sequences
[M::worker_pipeline::609.244*5.41] mapped 4000 sequences
[M::worker_pipeline::615.864*5.42] mapped 4000 sequences
[M::worker_pipeline::622.029*5.42] mapped 4000 sequences
[M::worker_pipeline::628.044*5.42] mapped 4000 sequences
[M::worker_pipeline::634.554*5.43] mapped 4000 sequences
[M::worker_pipeline::640.856*5.43] mapped 4000 sequences
[M::worker_pipeline::646.763*5.43] mapped 4000 sequences
[M::worker_pipeline::652.950*5.43] mapped 4000 sequences
[M::worker_pipeline::659.807*5.43] mapped 4000 sequences
[M::worker_pipeline::665.995*5.44] mapped 4000 sequences
[M::worker_pipeline::672.345*5.44] mapped 4000 sequences
[M::worker_pipeline::678.626*5.44] mapped 4000 sequences
[M::worker_pipeline::685.273*5.44] mapped 4000 sequences
[M::worker_pipeline::691.610*5.45] mapped 4000 sequences
[M::worker_pipeline::697.709*5.45] mapped 4000 sequences
[M::worker_pipeline::703.764*5.45] mapped 4000 sequences
[M::worker_pipeline::710.480*5.45] mapped 4000 sequences
[M::worker_pipeline::716.776*5.45] mapped 4000 sequences
[M::worker_pipeline::722.910*5.46] mapped 4000 sequences
[M::worker_pipeline::729.015*5.46] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch100.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch101.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch102.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch103.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch104.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch105.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch106.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch32.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch33.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch34.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch35.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch36.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch37.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch38.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch39.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch4.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch40.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch41.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch42.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch43.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch44.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch45.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch46.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch47.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch48.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch49.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch5.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch50.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch51.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch52.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch53.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch54.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch55.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch56.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch57.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch58.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch59.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch6.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch60.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch61.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch62.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch63.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep2/batch64.fast5.fastm.gz 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[M::main] Real time: 729.205 sec; CPU: 3978.765 sec; Peak RSS: 8.875 GB