[M::mm_idx_gen::34.121*1.95] collected minimizers
[M::mm_idx_gen::43.903*2.75] sorted minimizers
[M::main::43.903*2.75] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::44.342*2.73] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::44.528*2.73] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::50.677*3.09] mapped 4000 sequences
[M::worker_pipeline::57.450*3.32] mapped 4000 sequences
[M::worker_pipeline::63.771*3.55] mapped 4000 sequences
[M::worker_pipeline::69.813*3.73] mapped 4000 sequences
[M::worker_pipeline::75.958*3.88] mapped 4000 sequences
[M::worker_pipeline::81.808*4.01] mapped 4000 sequences
[M::worker_pipeline::87.993*4.13] mapped 4000 sequences
[M::worker_pipeline::94.119*4.23] mapped 4000 sequences
[M::worker_pipeline::99.838*4.32] mapped 4000 sequences
[M::worker_pipeline::105.937*4.40] mapped 4000 sequences
[M::worker_pipeline::111.951*4.46] mapped 4000 sequences
[M::worker_pipeline::117.792*4.52] mapped 4000 sequences
[M::worker_pipeline::124.287*4.58] mapped 4000 sequences
[M::worker_pipeline::130.121*4.63] mapped 4000 sequences
[M::worker_pipeline::136.461*4.68] mapped 4000 sequences
[M::worker_pipeline::142.678*4.72] mapped 4000 sequences
[M::worker_pipeline::148.896*4.76] mapped 4000 sequences
[M::worker_pipeline::154.836*4.80] mapped 4000 sequences
[M::worker_pipeline::160.962*4.84] mapped 4000 sequences
[M::worker_pipeline::166.992*4.87] mapped 4000 sequences
[M::worker_pipeline::173.417*4.90] mapped 4000 sequences
[M::worker_pipeline::179.370*4.93] mapped 4000 sequences
[M::worker_pipeline::185.729*4.95] mapped 4000 sequences
[M::worker_pipeline::191.899*4.97] mapped 4000 sequences
[M::worker_pipeline::198.373*5.00] mapped 4000 sequences
[M::worker_pipeline::204.944*5.01] mapped 4000 sequences
[M::worker_pipeline::210.996*5.03] mapped 4000 sequences
[M::worker_pipeline::216.806*5.05] mapped 4000 sequences
[M::worker_pipeline::223.038*5.06] mapped 4000 sequences
[M::worker_pipeline::229.049*5.08] mapped 4000 sequences
[M::worker_pipeline::234.853*5.10] mapped 4000 sequences
[M::worker_pipeline::241.105*5.11] mapped 4000 sequences
[M::worker_pipeline::247.502*5.12] mapped 4000 sequences
[M::worker_pipeline::253.704*5.13] mapped 4000 sequences
[M::worker_pipeline::260.019*5.15] mapped 4000 sequences
[M::worker_pipeline::265.753*5.16] mapped 4000 sequences
[M::worker_pipeline::277.828*5.10] mapped 4000 sequences
[M::worker_pipeline::283.777*5.11] mapped 4000 sequences
[M::worker_pipeline::290.081*5.12] mapped 4000 sequences
[M::worker_pipeline::296.066*5.13] mapped 4000 sequences
[M::worker_pipeline::308.193*5.07] mapped 4000 sequences
[M::worker_pipeline::314.621*5.08] mapped 4000 sequences
[M::worker_pipeline::320.631*5.09] mapped 4000 sequences
[M::worker_pipeline::326.657*5.10] mapped 4000 sequences
[M::worker_pipeline::332.844*5.12] mapped 4000 sequences
[M::worker_pipeline::339.292*5.12] mapped 4000 sequences
[M::worker_pipeline::345.553*5.13] mapped 4000 sequences
[M::worker_pipeline::351.460*5.14] mapped 4000 sequences
[M::worker_pipeline::357.910*5.15] mapped 4000 sequences
[M::worker_pipeline::364.154*5.16] mapped 4000 sequences
[M::worker_pipeline::370.288*5.17] mapped 4000 sequences
[M::worker_pipeline::376.742*5.18] mapped 4000 sequences
[M::worker_pipeline::392.325*5.08] mapped 2485 sequences
[M::worker_pipeline::398.230*5.09] mapped 4000 sequences
[M::worker_pipeline::404.284*5.10] mapped 4000 sequences
[M::worker_pipeline::410.220*5.11] mapped 4000 sequences
[M::worker_pipeline::416.429*5.11] mapped 4000 sequences
[M::worker_pipeline::422.566*5.12] mapped 4000 sequences
[M::worker_pipeline::428.083*5.13] mapped 4000 sequences
[M::worker_pipeline::433.838*5.14] mapped 4000 sequences
[M::worker_pipeline::463.708*4.94] mapped 4000 sequences
[M::worker_pipeline::470.782*4.95] mapped 4000 sequences
[M::worker_pipeline::476.950*4.96] mapped 4000 sequences
[M::worker_pipeline::482.813*4.96] mapped 4000 sequences
[M::worker_pipeline::489.074*4.97] mapped 4000 sequences
[M::worker_pipeline::494.655*4.98] mapped 4000 sequences
[M::worker_pipeline::501.264*4.99] mapped 4000 sequences
[M::worker_pipeline::507.279*5.00] mapped 4000 sequences
[M::worker_pipeline::513.225*5.01] mapped 4000 sequences
[M::worker_pipeline::519.926*5.02] mapped 4000 sequences
[M::worker_pipeline::526.129*5.02] mapped 4000 sequences
[M::worker_pipeline::532.115*5.03] mapped 4000 sequences
[M::worker_pipeline::542.365*5.01] mapped 4000 sequences
[M::worker_pipeline::548.699*5.02] mapped 4000 sequences
[M::worker_pipeline::554.764*5.02] mapped 4000 sequences
[M::worker_pipeline::560.980*5.03] mapped 4000 sequences
[M::worker_pipeline::566.939*5.04] mapped 4000 sequences
[M::worker_pipeline::572.890*5.04] mapped 4000 sequences
[M::worker_pipeline::578.930*5.05] mapped 4000 sequences
[M::worker_pipeline::585.142*5.06] mapped 4000 sequences
[M::worker_pipeline::590.964*5.06] mapped 4000 sequences
[M::worker_pipeline::597.216*5.07] mapped 4000 sequences
[M::worker_pipeline::603.488*5.08] mapped 4000 sequences
[M::worker_pipeline::609.200*5.08] mapped 4000 sequences
[M::worker_pipeline::614.951*5.09] mapped 4000 sequences
[M::worker_pipeline::620.755*5.09] mapped 4000 sequences
[M::worker_pipeline::626.769*5.10] mapped 4000 sequences
[M::worker_pipeline::632.482*5.10] mapped 4000 sequences
[M::worker_pipeline::638.570*5.11] mapped 4000 sequences
[M::worker_pipeline::644.515*5.12] mapped 4000 sequences
[M::worker_pipeline::650.361*5.12] mapped 4000 sequences
[M::worker_pipeline::656.613*5.13] mapped 4000 sequences
[M::worker_pipeline::662.662*5.13] mapped 4000 sequences
[M::worker_pipeline::668.683*5.14] mapped 4000 sequences
[M::worker_pipeline::674.581*5.14] mapped 4000 sequences
[M::worker_pipeline::680.333*5.15] mapped 4000 sequences
[M::worker_pipeline::686.731*5.15] mapped 4000 sequences
[M::worker_pipeline::692.600*5.15] mapped 4000 sequences
[M::worker_pipeline::699.224*5.16] mapped 4000 sequences
[M::worker_pipeline::706.477*5.16] mapped 4000 sequences
[M::worker_pipeline::712.702*5.17] mapped 4000 sequences
[M::worker_pipeline::719.074*5.17] mapped 4000 sequences
[M::worker_pipeline::724.952*5.18] mapped 4000 sequences
[M::worker_pipeline::731.447*5.18] mapped 4000 sequences
[M::worker_pipeline::737.985*5.19] mapped 4000 sequences
[M::worker_pipeline::744.454*5.19] mapped 4000 sequences
[M::worker_pipeline::750.760*5.19] mapped 4000 sequences
[M::worker_pipeline::756.692*5.20] mapped 4000 sequences
[M::worker_pipeline::762.704*5.20] mapped 4000 sequences
[M::worker_pipeline::768.686*5.21] mapped 4000 sequences
[M::worker_pipeline::774.704*5.21] mapped 4000 sequences
[M::worker_pipeline::780.736*5.21] mapped 4000 sequences
[M::worker_pipeline::786.969*5.22] mapped 4000 sequences
[M::worker_pipeline::793.241*5.22] mapped 4000 sequences
[M::worker_pipeline::799.042*5.23] mapped 4000 sequences
[M::worker_pipeline::804.889*5.23] mapped 4000 sequences
[M::worker_pipeline::811.668*5.23] mapped 4000 sequences
[M::worker_pipeline::817.979*5.23] mapped 4000 sequences
[M::worker_pipeline::823.951*5.24] mapped 4000 sequences
[M::worker_pipeline::829.374*5.24] mapped 4000 sequences
[M::worker_pipeline::834.998*5.24] mapped 4000 sequences
[M::worker_pipeline::840.724*5.25] mapped 4000 sequences
[M::worker_pipeline::846.899*5.25] mapped 4000 sequences
[M::worker_pipeline::852.858*5.25] mapped 4000 sequences
[M::worker_pipeline::858.993*5.25] mapped 4000 sequences
[M::worker_pipeline::865.095*5.26] mapped 4000 sequences
[M::worker_pipeline::870.705*5.26] mapped 4000 sequences
[M::worker_pipeline::876.766*5.26] mapped 4000 sequences
[M::worker_pipeline::882.391*5.27] mapped 4000 sequences
[M::worker_pipeline::888.278*5.27] mapped 4000 sequences
[M::worker_pipeline::894.003*5.27] mapped 4000 sequences
[M::worker_pipeline::912.872*5.22] mapped 4000 sequences
[M::worker_pipeline::918.821*5.22] mapped 4000 sequences
[M::worker_pipeline::924.737*5.22] mapped 4000 sequences
[M::worker_pipeline::959.339*5.10] mapped 4000 sequences
[M::worker_pipeline::965.436*5.11] mapped 4000 sequences
[M::worker_pipeline::971.726*5.11] mapped 4000 sequences
[M::worker_pipeline::978.154*5.11] mapped 4000 sequences
[M::worker_pipeline::984.299*5.12] mapped 4000 sequences
[M::worker_pipeline::990.469*5.12] mapped 4000 sequences
[M::worker_pipeline::996.498*5.13] mapped 4000 sequences
[M::worker_pipeline::1002.643*5.13] mapped 4000 sequences
[M::worker_pipeline::1008.579*5.13] mapped 4000 sequences
[M::worker_pipeline::1014.426*5.14] mapped 4000 sequences
[M::worker_pipeline::1020.735*5.14] mapped 4000 sequences
[M::worker_pipeline::1026.954*5.14] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch100.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch101.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch102.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch103.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch104.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch105.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch106.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch107.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch108.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch109.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch110.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch111.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch112.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch113.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch114.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch115.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch116.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch117.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch118.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch119.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch120.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch121.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch122.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch123.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch124.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch125.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch126.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch127.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch128.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch129.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch130.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch131.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch132.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch133.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch134.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch135.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch136.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch137.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch138.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch139.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch140.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch141.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch142.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch143.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch144.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch145.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/aAM_6hpf_Rep1/batch16.fast5.fastm.gz 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[M::main] Real time: 1027.174 sec; CPU: 5282.467 sec; Peak RSS: 8.875 GB