[M::mm_idx_gen::33.968*1.96] collected minimizers
[M::mm_idx_gen::43.718*2.76] sorted minimizers
[M::main::43.718*2.76] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::44.150*2.74] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::44.348*2.73] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::51.069*3.08] mapped 4000 sequences
[M::worker_pipeline::57.754*3.37] mapped 4000 sequences
[M::worker_pipeline::63.998*3.60] mapped 4000 sequences
[M::worker_pipeline::70.188*3.78] mapped 4000 sequences
[M::worker_pipeline::76.655*3.92] mapped 4000 sequences
[M::worker_pipeline::83.185*4.06] mapped 4000 sequences
[M::worker_pipeline::90.580*4.17] mapped 4000 sequences
[M::worker_pipeline::97.644*4.24] mapped 4000 sequences
[M::worker_pipeline::103.883*4.32] mapped 4000 sequences
[M::worker_pipeline::110.096*4.39] mapped 4000 sequences
[M::worker_pipeline::118.533*4.41] mapped 4000 sequences
[M::worker_pipeline::125.059*4.46] mapped 4000 sequences
[M::worker_pipeline::131.040*4.52] mapped 4000 sequences
[M::worker_pipeline::137.244*4.57] mapped 4000 sequences
[M::worker_pipeline::143.998*4.62] mapped 4000 sequences
[M::worker_pipeline::150.752*4.65] mapped 4000 sequences
[M::worker_pipeline::157.332*4.69] mapped 4000 sequences
[M::worker_pipeline::164.461*4.71] mapped 4000 sequences
[M::worker_pipeline::170.855*4.74] mapped 4000 sequences
[M::worker_pipeline::177.026*4.77] mapped 4000 sequences
[M::worker_pipeline::183.744*4.80] mapped 4000 sequences
[M::worker_pipeline::190.562*4.82] mapped 4000 sequences
[M::worker_pipeline::197.449*4.85] mapped 4000 sequences
[M::worker_pipeline::203.722*4.88] mapped 4000 sequences
[M::worker_pipeline::210.035*4.90] mapped 4000 sequences
[M::worker_pipeline::216.013*4.92] mapped 4000 sequences
[M::worker_pipeline::223.712*4.92] mapped 4000 sequences
[M::worker_pipeline::229.720*4.94] mapped 4000 sequences
[M::worker_pipeline::235.852*4.96] mapped 4000 sequences
[M::worker_pipeline::241.613*4.97] mapped 4000 sequences
[M::worker_pipeline::248.562*4.99] mapped 4000 sequences
[M::worker_pipeline::255.644*4.99] mapped 4000 sequences
[M::worker_pipeline::262.463*5.01] mapped 4000 sequences
[M::worker_pipeline::268.777*5.02] mapped 4000 sequences
[M::worker_pipeline::275.375*5.04] mapped 4000 sequences
[M::worker_pipeline::281.410*5.05] mapped 4000 sequences
[M::worker_pipeline::288.129*5.07] mapped 4000 sequences
[M::worker_pipeline::294.156*5.08] mapped 4000 sequences
[M::worker_pipeline::300.698*5.09] mapped 4000 sequences
[M::worker_pipeline::306.907*5.10] mapped 4000 sequences
[M::worker_pipeline::313.526*5.11] mapped 4000 sequences
[M::worker_pipeline::319.867*5.12] mapped 4000 sequences
[M::worker_pipeline::326.232*5.13] mapped 4000 sequences
[M::worker_pipeline::332.943*5.13] mapped 4000 sequences
[M::worker_pipeline::339.577*5.15] mapped 4000 sequences
[M::worker_pipeline::345.550*5.15] mapped 4000 sequences
[M::worker_pipeline::351.712*5.16] mapped 4000 sequences
[M::worker_pipeline::358.498*5.17] mapped 4000 sequences
[M::worker_pipeline::365.316*5.17] mapped 4000 sequences
[M::worker_pipeline::371.475*5.18] mapped 4000 sequences
[M::worker_pipeline::378.267*5.19] mapped 4000 sequences
[M::worker_pipeline::384.913*5.19] mapped 4000 sequences
[M::worker_pipeline::390.951*5.20] mapped 4000 sequences
[M::worker_pipeline::396.861*5.21] mapped 4000 sequences
[M::worker_pipeline::403.409*5.21] mapped 4000 sequences
[M::worker_pipeline::409.596*5.22] mapped 4000 sequences
[M::worker_pipeline::416.023*5.23] mapped 4000 sequences
[M::worker_pipeline::422.849*5.23] mapped 4000 sequences
[M::worker_pipeline::425.890*5.23] mapped 1850 sequences
[M::worker_pipeline::432.096*5.23] mapped 4000 sequences
[M::worker_pipeline::438.633*5.24] mapped 4000 sequences
[M::worker_pipeline::445.103*5.25] mapped 4000 sequences
[M::worker_pipeline::453.139*5.24] mapped 4000 sequences
[M::worker_pipeline::460.844*5.25] mapped 4000 sequences
[M::worker_pipeline::469.054*5.25] mapped 4000 sequences
[M::worker_pipeline::476.179*5.26] mapped 4000 sequences
[M::worker_pipeline::483.237*5.26] mapped 4000 sequences
[M::worker_pipeline::490.630*5.27] mapped 4000 sequences
[M::worker_pipeline::497.910*5.27] mapped 4000 sequences
[M::worker_pipeline::505.138*5.28] mapped 4000 sequences
[M::worker_pipeline::512.426*5.29] mapped 4000 sequences
[M::worker_pipeline::519.512*5.29] mapped 4000 sequences
[M::worker_pipeline::526.429*5.30] mapped 4000 sequences
[M::worker_pipeline::535.789*5.29] mapped 4000 sequences
[M::worker_pipeline::543.283*5.30] mapped 4000 sequences
[M::worker_pipeline::550.009*5.30] mapped 4000 sequences
[M::worker_pipeline::558.618*5.30] mapped 4000 sequences
[M::worker_pipeline::567.183*5.30] mapped 4000 sequences
[M::worker_pipeline::575.561*5.30] mapped 4000 sequences
[M::worker_pipeline::583.879*5.30] mapped 4000 sequences
[M::worker_pipeline::601.856*5.31] mapped 4000 sequences
[M::worker_pipeline::625.759*5.32] mapped 4000 sequences
[M::worker_pipeline::647.569*5.33] mapped 4000 sequences
[M::worker_pipeline::697.599*5.37] mapped 4000 sequences
[M::worker_pipeline::749.799*5.38] mapped 4000 sequences
[M::worker_pipeline::776.411*5.39] mapped 4000 sequences
[M::worker_pipeline::783.581*5.39] mapped 4000 sequences
[M::worker_pipeline::807.644*5.40] mapped 4000 sequences
[M::worker_pipeline::833.795*5.40] mapped 4000 sequences
[M::worker_pipeline::856.321*5.41] mapped 4000 sequences
[M::worker_pipeline::886.266*5.42] mapped 4000 sequences
[M::worker_pipeline::904.944*5.42] mapped 4000 sequences
[M::worker_pipeline::945.298*5.43] mapped 4000 sequences
[M::worker_pipeline::993.744*5.45] mapped 4000 sequences
[M::worker_pipeline::1015.994*5.46] mapped 4000 sequences
[M::worker_pipeline::1038.405*5.46] mapped 4000 sequences
[M::worker_pipeline::1063.156*5.46] mapped 4000 sequences
[M::worker_pipeline::1070.760*5.47] mapped 4000 sequences
[M::worker_pipeline::1092.965*5.47] mapped 4000 sequences
[M::worker_pipeline::1117.553*5.47] mapped 4000 sequences
[M::worker_pipeline::1144.280*5.46] mapped 4000 sequences
[M::worker_pipeline::1162.810*5.46] mapped 4000 sequences
[M::worker_pipeline::1190.161*5.47] mapped 4000 sequences
[M::worker_pipeline::1220.687*5.46] mapped 4000 sequences
[M::worker_pipeline::1244.521*5.46] mapped 4000 sequences
[M::worker_pipeline::1268.917*5.45] mapped 4000 sequences
[M::worker_pipeline::1298.122*5.46] mapped 4000 sequences
[M::worker_pipeline::1322.468*5.46] mapped 4000 sequences
[M::worker_pipeline::1330.936*5.46] mapped 4000 sequences
[M::worker_pipeline::1353.901*5.46] mapped 4000 sequences
[M::worker_pipeline::1371.880*5.46] mapped 4000 sequences
[M::worker_pipeline::1393.929*5.47] mapped 4000 sequences
[M::worker_pipeline::1418.734*5.47] mapped 4000 sequences
[M::worker_pipeline::1441.666*5.47] mapped 4000 sequences
[M::worker_pipeline::1463.498*5.47] mapped 4000 sequences
[M::worker_pipeline::1502.260*5.48] mapped 4000 sequences
[M::worker_pipeline::1533.906*5.48] mapped 4000 sequences
[M::worker_pipeline::1564.955*5.49] mapped 4000 sequences
[M::worker_pipeline::1608.539*5.47] mapped 4000 sequences
[M::worker_pipeline::1615.581*5.47] mapped 4000 sequences
[M::worker_pipeline::1642.490*5.48] mapped 4000 sequences
[M::worker_pipeline::1661.368*5.48] mapped 4000 sequences
[M::worker_pipeline::1677.520*5.48] mapped 4000 sequences
[M::worker_pipeline::1697.577*5.48] mapped 4000 sequences
[M::worker_pipeline::1725.461*5.48] mapped 4000 sequences
[M::worker_pipeline::1746.126*5.48] mapped 4000 sequences
[M::worker_pipeline::1785.665*5.45] mapped 4000 sequences
[M::worker_pipeline::1809.556*5.45] mapped 4000 sequences
[M::worker_pipeline::1832.812*5.45] mapped 4000 sequences
[M::worker_pipeline::1857.936*5.46] mapped 4000 sequences
[M::worker_pipeline::1864.888*5.46] mapped 4000 sequences
[M::worker_pipeline::1892.083*5.45] mapped 4000 sequences
[M::worker_pipeline::1914.255*5.45] mapped 4000 sequences
[M::worker_pipeline::2006.751*5.32] mapped 4000 sequences
[M::worker_pipeline::2038.568*5.32] mapped 4000 sequences
[M::worker_pipeline::2049.700*5.31] mapped 1296 sequences
[M::worker_pipeline::2057.481*5.31] mapped 4000 sequences
[M::worker_pipeline::2065.272*5.32] mapped 4000 sequences
[M::worker_pipeline::2072.590*5.32] mapped 4000 sequences
[M::worker_pipeline::2080.407*5.32] mapped 4000 sequences
[M::worker_pipeline::2087.943*5.32] mapped 4000 sequences
[M::worker_pipeline::2094.673*5.32] mapped 4000 sequences
[M::worker_pipeline::2103.182*5.32] mapped 4000 sequences
[M::worker_pipeline::2110.256*5.32] mapped 4000 sequences
[M::worker_pipeline::2118.158*5.32] mapped 4000 sequences
[M::worker_pipeline::2125.594*5.33] mapped 4000 sequences
[M::worker_pipeline::2133.082*5.33] mapped 4000 sequences
[M::worker_pipeline::2140.866*5.33] mapped 4000 sequences
[M::worker_pipeline::2147.832*5.33] mapped 4000 sequences
[M::worker_pipeline::2154.327*5.33] mapped 4000 sequences
[M::worker_pipeline::2161.000*5.33] mapped 4000 sequences
[M::worker_pipeline::2168.087*5.33] mapped 4000 sequences
[M::worker_pipeline::2175.816*5.33] mapped 4000 sequences
[M::worker_pipeline::2184.470*5.33] mapped 4000 sequences
[M::worker_pipeline::2192.695*5.33] mapped 4000 sequences
[M::worker_pipeline::2200.365*5.33] mapped 4000 sequences
[M::worker_pipeline::2209.358*5.33] mapped 4000 sequences
[M::worker_pipeline::2216.558*5.33] mapped 4000 sequences
[M::worker_pipeline::2224.832*5.33] mapped 4000 sequences
[M::worker_pipeline::2232.887*5.33] mapped 4000 sequences
[M::worker_pipeline::2240.117*5.33] mapped 4000 sequences
[M::worker_pipeline::2249.457*5.33] mapped 4000 sequences
[M::worker_pipeline::2256.551*5.33] mapped 4000 sequences
[M::worker_pipeline::2263.477*5.33] mapped 4000 sequences
[M::worker_pipeline::2271.256*5.34] mapped 4000 sequences
[M::worker_pipeline::2279.063*5.34] mapped 4000 sequences
[M::worker_pipeline::2286.005*5.34] mapped 4000 sequences
[M::worker_pipeline::2294.481*5.34] mapped 4000 sequences
[M::worker_pipeline::2302.123*5.34] mapped 4000 sequences
[M::worker_pipeline::2310.088*5.34] mapped 4000 sequences
[M::worker_pipeline::2318.247*5.34] mapped 4000 sequences
[M::worker_pipeline::2325.300*5.34] mapped 4000 sequences
[M::worker_pipeline::2332.846*5.34] mapped 4000 sequences
[M::worker_pipeline::2340.590*5.34] mapped 4000 sequences
[M::worker_pipeline::2348.582*5.35] mapped 4000 sequences
[M::worker_pipeline::2356.184*5.35] mapped 4000 sequences
[M::worker_pipeline::2363.490*5.35] mapped 4000 sequences
[M::worker_pipeline::2371.205*5.35] mapped 4000 sequences
[M::worker_pipeline::2378.482*5.35] mapped 4000 sequences
[M::worker_pipeline::2386.759*5.35] mapped 4000 sequences
[M::worker_pipeline::2393.917*5.35] mapped 4000 sequences
[M::worker_pipeline::2401.094*5.35] mapped 4000 sequences
[M::worker_pipeline::2409.895*5.35] mapped 4000 sequences
[M::worker_pipeline::2417.941*5.35] mapped 4000 sequences
[M::worker_pipeline::2426.112*5.35] mapped 4000 sequences
[M::worker_pipeline::2435.131*5.35] mapped 4000 sequences
[M::worker_pipeline::2442.783*5.35] mapped 4000 sequences
[M::worker_pipeline::2449.658*5.35] mapped 4000 sequences
[M::worker_pipeline::2456.034*5.35] mapped 4000 sequences
[M::worker_pipeline::2464.183*5.35] mapped 4000 sequences
[M::worker_pipeline::2471.676*5.35] mapped 4000 sequences
[M::worker_pipeline::2479.121*5.36] mapped 4000 sequences
[M::worker_pipeline::2485.925*5.36] mapped 4000 sequences
[M::worker_pipeline::2493.446*5.36] mapped 4000 sequences
[M::worker_pipeline::2501.121*5.36] mapped 4000 sequences
[M::worker_pipeline::2508.546*5.36] mapped 4000 sequences
[M::worker_pipeline::2516.120*5.36] mapped 4000 sequences
[M::worker_pipeline::2523.256*5.36] mapped 4000 sequences
[M::worker_pipeline::2531.037*5.36] mapped 4000 sequences
[M::worker_pipeline::2538.248*5.36] mapped 4000 sequences
[M::worker_pipeline::2545.371*5.36] mapped 4000 sequences
[M::worker_pipeline::2553.018*5.36] mapped 4000 sequences
[M::worker_pipeline::2560.303*5.36] mapped 4000 sequences
[M::worker_pipeline::2568.093*5.37] mapped 4000 sequences
[M::worker_pipeline::2575.165*5.37] mapped 4000 sequences
[M::worker_pipeline::2583.180*5.37] mapped 4000 sequences
[M::worker_pipeline::2590.067*5.37] mapped 4000 sequences
[M::worker_pipeline::2597.385*5.37] mapped 4000 sequences
[M::worker_pipeline::2604.204*5.37] mapped 4000 sequences
[M::worker_pipeline::2612.709*5.37] mapped 4000 sequences
[M::worker_pipeline::2620.075*5.37] mapped 4000 sequences
[M::worker_pipeline::2627.480*5.37] mapped 4000 sequences
[M::worker_pipeline::2635.202*5.37] mapped 4000 sequences
[M::worker_pipeline::2642.533*5.37] mapped 4000 sequences
[M::worker_pipeline::2650.009*5.37] mapped 4000 sequences
[M::worker_pipeline::2657.545*5.37] mapped 4000 sequences
[M::worker_pipeline::2664.930*5.38] mapped 4000 sequences
[M::worker_pipeline::2672.170*5.38] mapped 4000 sequences
[M::worker_pipeline::2680.034*5.38] mapped 4000 sequences
[M::worker_pipeline::2688.304*5.38] mapped 4000 sequences
[M::worker_pipeline::2695.532*5.38] mapped 4000 sequences
[M::worker_pipeline::2703.129*5.38] mapped 4000 sequences
[M::worker_pipeline::2710.767*5.38] mapped 4000 sequences
[M::worker_pipeline::2718.046*5.38] mapped 4000 sequences
[M::worker_pipeline::2724.935*5.38] mapped 4000 sequences
[M::worker_pipeline::2733.505*5.38] mapped 4000 sequences
[M::worker_pipeline::2740.850*5.38] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch15.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch16.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch17.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch18.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch19.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch2.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch20.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch21.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch22.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch23.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch24.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch25.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch26.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch27.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch28.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch29.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch3.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch30.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch31.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep3/batch32.fast5.fastm.gz 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[M::main] Real time: 2741.023 sec; CPU: 14752.068 sec; Peak RSS: 12.041 GB