[M::mm_idx_gen::34.170*1.94] collected minimizers
[M::mm_idx_gen::43.546*2.74] sorted minimizers
[M::main::43.546*2.74] loaded/built the index for 993 target sequence(s)
[M::mm_mapopt_update::43.952*2.72] mid_occ = 2799
[M::mm_idx_stat] kmer size: 13; skip: 5; is_hpc: 0; #seq: 993
[M::mm_idx_stat::44.135*2.72] distinct minimizers: 19647024 (16.73% are singletons); average occurrences: 24.128; average spacing: 2.897
[M::worker_pipeline::52.942*3.21] mapped 4000 sequences
[M::worker_pipeline::60.228*3.51] mapped 4000 sequences
[M::worker_pipeline::68.952*3.67] mapped 4000 sequences
[M::worker_pipeline::76.978*3.86] mapped 4000 sequences
[M::worker_pipeline::85.097*4.02] mapped 4000 sequences
[M::worker_pipeline::92.663*4.14] mapped 4000 sequences
[M::worker_pipeline::100.093*4.25] mapped 4000 sequences
[M::worker_pipeline::109.582*4.29] mapped 4000 sequences
[M::worker_pipeline::118.197*4.37] mapped 4000 sequences
[M::worker_pipeline::126.139*4.44] mapped 4000 sequences
[M::worker_pipeline::134.708*4.51] mapped 4000 sequences
[M::worker_pipeline::142.100*4.58] mapped 4000 sequences
[M::worker_pipeline::151.288*4.62] mapped 4000 sequences
[M::worker_pipeline::161.136*4.65] mapped 4000 sequences
[M::worker_pipeline::169.894*4.67] mapped 4000 sequences
[M::worker_pipeline::177.941*4.71] mapped 4000 sequences
[M::worker_pipeline::184.538*4.75] mapped 4000 sequences
[M::worker_pipeline::191.904*4.78] mapped 4000 sequences
[M::worker_pipeline::199.531*4.82] mapped 4000 sequences
[M::worker_pipeline::206.707*4.84] mapped 4000 sequences
[M::worker_pipeline::213.974*4.87] mapped 4000 sequences
[M::worker_pipeline::221.006*4.90] mapped 4000 sequences
[M::worker_pipeline::228.804*4.93] mapped 4000 sequences
[M::worker_pipeline::236.896*4.96] mapped 4000 sequences
[M::worker_pipeline::244.376*4.98] mapped 4000 sequences
[M::worker_pipeline::251.519*5.00] mapped 4000 sequences
[M::worker_pipeline::258.991*5.01] mapped 4000 sequences
[M::worker_pipeline::266.895*5.03] mapped 4000 sequences
[M::worker_pipeline::275.029*5.04] mapped 4000 sequences
[M::worker_pipeline::282.915*5.06] mapped 4000 sequences
[M::worker_pipeline::290.442*5.08] mapped 4000 sequences
[M::worker_pipeline::298.604*5.10] mapped 4000 sequences
[M::worker_pipeline::306.330*5.11] mapped 4000 sequences
[M::worker_pipeline::313.769*5.13] mapped 4000 sequences
[M::worker_pipeline::322.295*5.14] mapped 4000 sequences
[M::worker_pipeline::329.460*5.15] mapped 4000 sequences
[M::worker_pipeline::337.837*5.16] mapped 4000 sequences
[M::worker_pipeline::345.961*5.16] mapped 4000 sequences
[M::worker_pipeline::353.960*5.17] mapped 4000 sequences
[M::worker_pipeline::361.721*5.18] mapped 4000 sequences
[M::worker_pipeline::370.394*5.19] mapped 4000 sequences
[M::worker_pipeline::378.165*5.20] mapped 4000 sequences
[M::worker_pipeline::386.035*5.21] mapped 4000 sequences
[M::worker_pipeline::393.653*5.22] mapped 4000 sequences
[M::worker_pipeline::401.374*5.23] mapped 4000 sequences
[M::worker_pipeline::409.068*5.23] mapped 4000 sequences
[M::worker_pipeline::416.138*5.24] mapped 4000 sequences
[M::worker_pipeline::424.196*5.25] mapped 4000 sequences
[M::worker_pipeline::432.163*5.26] mapped 4000 sequences
[M::worker_pipeline::439.186*5.26] mapped 4000 sequences
[M::worker_pipeline::446.845*5.27] mapped 4000 sequences
[M::worker_pipeline::454.564*5.27] mapped 4000 sequences
[M::worker_pipeline::462.438*5.28] mapped 4000 sequences
[M::worker_pipeline::469.849*5.28] mapped 4000 sequences
[M::worker_pipeline::477.447*5.29] mapped 4000 sequences
[M::worker_pipeline::485.363*5.30] mapped 4000 sequences
[M::worker_pipeline::493.493*5.30] mapped 4000 sequences
[M::worker_pipeline::500.609*5.30] mapped 4000 sequences
[M::worker_pipeline::508.583*5.31] mapped 4000 sequences
[M::worker_pipeline::516.315*5.32] mapped 4000 sequences
[M::worker_pipeline::524.042*5.32] mapped 4000 sequences
[M::worker_pipeline::531.383*5.32] mapped 4000 sequences
[M::worker_pipeline::538.662*5.33] mapped 4000 sequences
[M::worker_pipeline::547.491*5.33] mapped 4000 sequences
[M::worker_pipeline::555.272*5.34] mapped 4000 sequences
[M::worker_pipeline::562.932*5.34] mapped 4000 sequences
[M::worker_pipeline::570.498*5.34] mapped 4000 sequences
[M::worker_pipeline::577.903*5.35] mapped 4000 sequences
[M::worker_pipeline::585.856*5.35] mapped 4000 sequences
[M::worker_pipeline::593.683*5.36] mapped 4000 sequences
[M::worker_pipeline::602.388*5.36] mapped 4000 sequences
[M::worker_pipeline::616.983*5.32] mapped 4000 sequences
[M::worker_pipeline::626.110*5.32] mapped 4000 sequences
[M::worker_pipeline::634.972*5.33] mapped 4000 sequences
[M::worker_pipeline::642.165*5.33] mapped 4000 sequences
[M::worker_pipeline::648.932*5.33] mapped 4000 sequences
[M::worker_pipeline::655.913*5.34] mapped 4000 sequences
[M::worker_pipeline::663.869*5.34] mapped 4000 sequences
[M::worker_pipeline::671.290*5.35] mapped 4000 sequences
[M::worker_pipeline::679.140*5.35] mapped 4000 sequences
[M::worker_pipeline::687.019*5.35] mapped 4000 sequences
[M::worker_pipeline::694.890*5.35] mapped 4000 sequences
[M::worker_pipeline::703.589*5.35] mapped 4000 sequences
[M::worker_pipeline::711.129*5.35] mapped 4000 sequences
[M::worker_pipeline::718.709*5.36] mapped 4000 sequences
[M::worker_pipeline::725.947*5.36] mapped 4000 sequences
[M::worker_pipeline::734.320*5.36] mapped 4000 sequences
[M::worker_pipeline::734.553*5.36] mapped 169 sequences
[M::worker_pipeline::742.656*5.37] mapped 4000 sequences
[M::worker_pipeline::751.085*5.37] mapped 4000 sequences
[M::worker_pipeline::758.629*5.37] mapped 4000 sequences
[M::worker_pipeline::766.393*5.37] mapped 4000 sequences
[M::worker_pipeline::774.192*5.38] mapped 4000 sequences
[M::worker_pipeline::782.296*5.38] mapped 4000 sequences
[M::worker_pipeline::790.749*5.38] mapped 4000 sequences
[M::worker_pipeline::798.663*5.38] mapped 4000 sequences
[M::worker_pipeline::806.369*5.38] mapped 4000 sequences
[M::worker_pipeline::815.097*5.38] mapped 4000 sequences
[M::worker_pipeline::823.005*5.38] mapped 4000 sequences
[M::worker_pipeline::830.351*5.39] mapped 4000 sequences
[M::worker_pipeline::838.326*5.39] mapped 4000 sequences
[M::worker_pipeline::845.860*5.39] mapped 4000 sequences
[M::worker_pipeline::854.093*5.39] mapped 4000 sequences
[M::worker_pipeline::861.993*5.39] mapped 4000 sequences
[M::worker_pipeline::869.887*5.40] mapped 4000 sequences
[M::worker_pipeline::878.137*5.40] mapped 4000 sequences
[M::worker_pipeline::885.996*5.40] mapped 4000 sequences
[M::worker_pipeline::892.735*5.40] mapped 4000 sequences
[M::worker_pipeline::900.642*5.40] mapped 4000 sequences
[M::worker_pipeline::908.436*5.41] mapped 4000 sequences
[M::worker_pipeline::917.280*5.40] mapped 4000 sequences
[M::worker_pipeline::925.760*5.41] mapped 4000 sequences
[M::worker_pipeline::933.797*5.41] mapped 4000 sequences
[M::worker_pipeline::941.985*5.41] mapped 4000 sequences
[M::worker_pipeline::949.058*5.41] mapped 4000 sequences
[M::worker_pipeline::957.978*5.41] mapped 4000 sequences
[M::worker_pipeline::966.868*5.41] mapped 4000 sequences
[M::worker_pipeline::974.616*5.41] mapped 4000 sequences
[M::worker_pipeline::983.484*5.41] mapped 4000 sequences
[M::worker_pipeline::991.222*5.41] mapped 4000 sequences
[M::worker_pipeline::999.986*5.41] mapped 4000 sequences
[M::worker_pipeline::1007.830*5.42] mapped 4000 sequences
[M::worker_pipeline::1017.926*5.41] mapped 4000 sequences
[M::worker_pipeline::1025.216*5.41] mapped 4000 sequences
[M::worker_pipeline::1033.371*5.42] mapped 4000 sequences
[M::worker_pipeline::1040.829*5.42] mapped 4000 sequences
[M::worker_pipeline::1047.965*5.42] mapped 4000 sequences
[M::worker_pipeline::1056.455*5.42] mapped 4000 sequences
[M::worker_pipeline::1064.118*5.42] mapped 4000 sequences
[M::worker_pipeline::1072.190*5.42] mapped 4000 sequences
[M::worker_pipeline::1079.764*5.42] mapped 4000 sequences
[M::worker_pipeline::1088.069*5.42] mapped 4000 sequences
[M::worker_pipeline::1095.838*5.43] mapped 4000 sequences
[M::worker_pipeline::1103.323*5.43] mapped 4000 sequences
[M::worker_pipeline::1111.750*5.42] mapped 4000 sequences
[M::worker_pipeline::1119.393*5.42] mapped 4000 sequences
[M::worker_pipeline::1127.751*5.43] mapped 4000 sequences
[M::worker_pipeline::1135.510*5.43] mapped 4000 sequences
[M::worker_pipeline::1143.804*5.43] mapped 4000 sequences
[M::worker_pipeline::1152.299*5.43] mapped 4000 sequences
[M::worker_pipeline::1160.308*5.43] mapped 4000 sequences
[M::worker_pipeline::1168.295*5.43] mapped 4000 sequences
[M::worker_pipeline::1176.223*5.43] mapped 4000 sequences
[M::worker_pipeline::1183.695*5.44] mapped 4000 sequences
[M::worker_pipeline::1191.524*5.44] mapped 4000 sequences
[M::worker_pipeline::1199.437*5.44] mapped 4000 sequences
[M::worker_pipeline::1206.573*5.44] mapped 4000 sequences
[M::worker_pipeline::1213.614*5.44] mapped 4000 sequences
[M::worker_pipeline::1222.629*5.44] mapped 4000 sequences
[M::worker_pipeline::1230.900*5.44] mapped 4000 sequences
[M::worker_pipeline::1238.196*5.44] mapped 4000 sequences
[M::worker_pipeline::1245.555*5.44] mapped 4000 sequences
[M::worker_pipeline::1253.754*5.44] mapped 4000 sequences
[M::worker_pipeline::1260.690*5.45] mapped 4000 sequences
[M::worker_pipeline::1268.608*5.45] mapped 4000 sequences
[M::worker_pipeline::1276.039*5.45] mapped 4000 sequences
[M::worker_pipeline::1284.403*5.45] mapped 4000 sequences
[M::worker_pipeline::1291.819*5.45] mapped 4000 sequences
[M::worker_pipeline::1299.259*5.45] mapped 4000 sequences
[M::worker_pipeline::1307.173*5.45] mapped 4000 sequences
[M::worker_pipeline::1314.947*5.45] mapped 4000 sequences
[M::worker_pipeline::1322.486*5.45] mapped 4000 sequences
[M::worker_pipeline::1330.949*5.46] mapped 4000 sequences
[M::worker_pipeline::1338.597*5.46] mapped 4000 sequences
[M::worker_pipeline::1346.117*5.46] mapped 4000 sequences
[M::worker_pipeline::1354.035*5.46] mapped 4000 sequences
[M::worker_pipeline::1361.209*5.46] mapped 4000 sequences
[M::worker_pipeline::1369.285*5.46] mapped 4000 sequences
[M::worker_pipeline::1377.226*5.46] mapped 4000 sequences
[M::worker_pipeline::1386.143*5.46] mapped 4000 sequences
[M::worker_pipeline::1394.325*5.46] mapped 4000 sequences
[M::worker_pipeline::1402.137*5.47] mapped 4000 sequences
[M::worker_pipeline::1409.488*5.47] mapped 4000 sequences
[M::worker_pipeline::1416.659*5.47] mapped 4000 sequences
[M::worker_pipeline::1424.940*5.47] mapped 4000 sequences
[M::worker_pipeline::1432.684*5.47] mapped 4000 sequences
[M::worker_pipeline::1440.894*5.47] mapped 4000 sequences
[M::worker_pipeline::1449.615*5.47] mapped 4000 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -t6 -axsplice -k13 /no_backup_isis/enovoa/reference_fasta/zebrafish/reference/Danio_rerio.GRCz11.dna_sm.primary_assembly.fa /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch0.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch1.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch10.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch100.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch101.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch102.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch103.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch104.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch105.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch106.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch107.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch108.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch109.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch11.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch110.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch111.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch112.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch113.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch114.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch115.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch116.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch117.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch118.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch119.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch12.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch120.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch121.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch122.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch123.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch124.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch125.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch126.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch127.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch128.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch129.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch13.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch130.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch131.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch132.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch133.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch134.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch135.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch136.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch137.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch138.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch139.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch14.fast5.fastm.gz /nfs/no_backup/enovoa/nextflow_outputs/zebrafish_garvan/modPhred_aAM_430LNA/ModPhred_RawOutput/reads/430LNA_6hpf_Rep1/batch140.fast5.fastm.gz 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[M::main] Real time: 1449.868 sec; CPU: 7929.115 sec; Peak RSS: 8.875 GB