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====================================================
BIOCORE@CRG Preprocessing of Nanopore direct RNA - N F  ~  version 0.1
====================================================

kit                       : SQK-RNA002
flowcell                  : FLO-MIN106
fast5                     : /no_backup_isis/enovoa/data/ont/viral_RNA_coronavirus/PRJNA608224_Virions_Australia/fast5/*.fast5
reference                 : /no_backup_isis/enovoa/reference_fasta/viral_rna_coronavirus/coronavirus_Wuhan-Hu-1.fa
annotation                : /home/andelgado/software/master_of_pores/NanoPreprocess/coronavirus_Wuhan-Hu-1.gtf

ref_type                  : genome
seq_type                  : RNA

output                    : /no_backup_isis/enovoa/nextflow_outputs/viral_RNA_coronavirus/PRJNA608224_Virions_Australia/Guppy3.1.5_Minimap2Default/
qualityqc                 : 5
granularity               : 

basecaller                : guppy (3.1.5)
basecaller_opt            : 
GPU                       : ON
demultiplexing            :  
demultiplexing_opt        : -m pAmps-final-actrun_newdata_nanopore_UResNet20v2_model.030.h5 
demulti_fast5                 : OFF

filter                    : 
filter_opt                : 
mapper                    : minimap2
mapper_opt                : -uf -k14
map_type                  : spliced

counter                   : YES
counter_opt               : --type 'gene' --nonunique all --stranded=no

variant_call              : null
variant_opt               : null

email                     :