Summary Statistics

Plots

Histogram of read lengths

Histogram of read lengths after log transformation

Weighted Histogram of read lengths

Weighted Histogram of read lengths after log transformation

Dynamic histogram of Read length

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation

Aligned read lengths vs Sequenced read length plot using dots

Aligned read lengths vs Sequenced read length plot using a kernel density estimation

Read mapping quality vs Average basecall quality plot using dots

Read mapping quality vs Average basecall quality plot using a kernel density estimation

Read length vs Read mapping quality plot using dots

Read length vs Read mapping quality plot using a kernel density estimation

Percent identity vs Average Base Quality plot using dots

Percent identity vs Average Base Quality plot using a kernel density estimation

Aligned read length vs Percent identity plot using dots

Aligned read length vs Percent identity plot using a kernel density estimation

Dynamic histogram of percent identity

NanoPlot report

Summary statistics

feature
General summary
Average percent identity 86.4
Mean read length 1,085.5
Mean read quality 10.8
Median percent identity 87.7
Median read length 817.0
Median read quality 10.9
Number of reads 423,944.0
Read length N50 1,428.0
Total bases 460,177,611.0
Total bases aligned 438,887,180.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 423943 (100.0%) 460.2Mb
>Q7 423809 (100.0%) 460.1Mb
>Q10 308244 (72.7%) 367.3Mb
>Q12 86944 (20.5%) 118.8Mb
>Q15 204 (0.0%) 0.1Mb
Top 5 highest mean basecall quality scores and their read lengths
1 17.9 (193; 01ba094d-22e1-48de-9361-f057265870d3)
2 17.9 (124; 2de3060a-1024-4644-afae-8d7fba17814b)
3 17.5 (197; 3db98f4c-8690-4f3c-ad01-148ad5e17ac8)
4 17.3 (141; 56563112-3f8e-4b82-bfa6-a2f7b3565a61)
5 17.1 (141; 728c56a1-5ec6-460b-bb6f-ecc15c94d199)
Top 5 longest reads and their mean basecall quality score
1 14068 (11.8; 7e29e427-b663-446d-b750-898860bddf7f)
2 13322 (12.0; 26d84dae-3b9c-4ba5-948e-6afbbc410e55)
3 13300 (11.8; 2f1462f1-45e1-4aea-9710-1097d71a6b1e)
4 12745 (11.9; a52fd960-021c-4431-b2bc-5c6ceac767b7)
5 12711 (9.7; c25c9c31-e73e-49ba-840c-7250d905f07a)

Plots

Histogram of read lengths





Histogram of read lengths after log transformation





Weighted Histogram of read lengths





Weighted Histogram of read lengths after log transformation





Dynamic histogram of Read length





Yield by length





Read lengths vs Average read quality plot using dots





Read lengths vs Average read quality plot using a kernel density estimation





Aligned read lengths vs Sequenced read length plot using dots





Aligned read lengths vs Sequenced read length plot using a kernel density estimation





Read mapping quality vs Average basecall quality plot using dots





Read mapping quality vs Average basecall quality plot using a kernel density estimation





Read length vs Read mapping quality plot using dots





Read length vs Read mapping quality plot using a kernel density estimation





Percent identity vs Average Base Quality plot using dots





Percent identity vs Average Base Quality plot using a kernel density estimation





Aligned read length vs Percent identity plot using dots





Aligned read length vs Percent identity plot using a kernel density estimation





Dynamic histogram of percent identity