for file in /users/enovoa/andelgado/viral/clustering/Australian_Covid19_cells/*.txt
do
labels=$(echo $file | cut -d '/' -f 8 | cut -d '_' -f2,3 | cut -d '.' -f1) 
#echo batch_$labels
fast5_subset --input /no_backup_isis/enovoa/nextflow_outputs/viral_RNA_coronavirus/PRJNA608224_Covid19_Australia/Guppy3.1.5_Minimap2Default/fast5_files --save_path $PWD --read_id_list $file --batch_size 4000 --filename_base batch_$labels --recursive
mv filename_mapping.txt $labels.stats
done