FastQCFastQC Report
Sun 15 Mar 2020
SARS-COV2_pass.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSARS-COV2_pass.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences680347
Sequences flagged as poor quality0
Sequence length6-21433
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT7260.10671025226832778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)