╔╦╗┌─┐┌─┐┌┬┐┌─┐┬─┐ ┌─┐┌─┐ ╔═╗╔═╗╦═╗╔═╗╔═╗ ║║║├─┤└─┐ │ ├┤ ├┬┘ │ │├┤ ╠═╝║ ║╠╦╝║╣ ╚═╗ ╩ ╩┴ ┴└─┘ ┴ └─┘┴└─ └─┘└ ╩ ╚═╝╩╚═╚═╝╚═╝ ==================================================== BIOCORE@CRG Preprocessing of Nanopore direct RNA - N F ~ version 0.1 ==================================================== fast5 : /no_backup_isis/enovoa/data/ont/viral_RNA_coronavirus/PRJEB33797_Viehweger_GR2019/sl2/20170929_1004_coro/*.fast5 fastq : /no_backup_isis/enovoa/analysis/basecalling/guppy3/viral_RNA_coronavirus/PRJEB33797_Viehweger_GR2019/sl2/sl2_Viehweger_GR2019.fastq.gz reference : /no_backup_isis/enovoa/reference_fasta/viral_rna_coronavirus/WT_229E_reference.fa annotation : /no_backup_isis/enovoa/reference_fasta/annotations/WT_229E_annotation_updated.gtf ref_type : genome seq_type : RNA output : /no_backup_isis/enovoa/nextflow_outputs/viral_RNA_coronavirus/PRJEB33797_Viehweger_GR2019/sl2/Guppy3.1.5_Minimap2Default_nonSpliced/ qualityqc : 5 granularity : GPU : OFF demultiplexing : demultiplexing_opt : -s 0.9 -m pAmps-final-actrun_newdata_nanopore_UResNet20v2_model.030.h5 demultifast5 : null filter : filter_opt : mapper : minimap2 mapper_opt : -uf -k 14 map_type : unspliced counter : YES counter_opt : --type 'gene' --stranded=no --nonunique all email :