╔╦╗┌─┐┌─┐┌┬┐┌─┐┬─┐ ┌─┐┌─┐ ╔═╗╔═╗╦═╗╔═╗╔═╗ ║║║├─┤└─┐ │ ├┤ ├┬┘ │ │├┤ ╠═╝║ ║╠╦╝║╣ ╚═╗ ╩ ╩┴ ┴└─┘ ┴ └─┘┴└─ └─┘└ ╩ ╚═╝╩╚═╚═╝╚═╝ ==================================================== BIOCORE@CRG Preprocessing of Nanopore direct RNA - N F ~ version 0.1 ==================================================== kit : SQK-RNA002 flowcell : FLO-MIN106 fast5 : /no_backup_isis/enovoa/data/ont/viral_RNA_coronavirus/PRJEB33797_Viehweger_GR2019/sl2/*.fast5 reference : /no_backup_isis/enovoa/reference_fasta/viral_rna_coronavirus/WT_229E_reference.fa annotation : ref_type : genome seq_type : RNA output : /no_backup_isis/enovoa/nextflow_outputs/viral_RNA_coronavirus/PRJEB33797_Viehweger_GR2019/sl2/Guppy3.1.5_Minimap2Default/ qualityqc : 5 granularity : basecaller : guppy basecaller_opt : GPU : ON demultiplexing : demultiplexing_opt : demulti_fast5 : OFF filter : filter_opt : mapper : minimap2 mapper_opt : -uf -k14 map_type : spliced counter : NO counter_opt : email :