FastQCFastQC Report
Sun 22 Mar 2020
8F6N9_OSF_Covid19_Korea_Vero_Infected.reads_U2T.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename8F6N9_OSF_Covid19_Korea_Vero_Infected.reads_U2T.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences879679
Sequences flagged as poor quality0
Sequence length1-59067
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT35310.4013964184662815No Hit
AGATTGTGTTTGTTAGTCGCTATGGCTGTCTCTAAAGTTTACGCTAGATC20570.2338352967389241No Hit
ACCTTCCCAGGTAACAAACCAACCAACTTCGATCTCTTGTAGATCTGTTC19810.2251957816430766No Hit
ACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTGTAGATCTGTTC15310.17404075804924296No Hit
ACCTTCCCAGGTAACAAACCAACCAACTTTCGATTTCTTGTAGATCTGTT14540.16528756512318699No Hit
ACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTTGTAGATCTGTTCT12220.13891430851481051No Hit
ACCTTCCCAGGTAACAAACCAACCAACTTCGATCTCTGTAGATCTGTTCT10170.11561035332206407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)