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BIOCORE@CRG Preprocessing of Nanopore direct RNA - N F  ~  version 0.1
====================================================

fast5                     : /no_backup_isis/enovoa/basecalling/guppy3/viral_RNA_coronavirus/8F6N9_OSF_Covid19_Korea/Vero_Infected/fast5_files/*.fast5
fastq                     : /no_backup_isis/enovoa/basecalling/guppy3/viral_RNA_coronavirus/8F6N9_OSF_Covid19_Korea/Vero_Infected/8F6N9_OSF_Covid19_Korea_Vero_Infected.reads_U2T.fastq.gz
reference                 : /no_backup_isis/enovoa/reference_fasta/viral_rna_coronavirus/coronavirus_Wuhan-Hu-1.fa
annotation                : /no_backup_isis/enovoa/reference_fasta/annotations/coronavirus_Wuhan-Hu-1.gtf

ref_type                  : genome
seq_type                  : RNA

output                    : /no_backup_isis/enovoa/nextflow_outputs/viral_RNA_coronavirus/8F6N9_OSF_Covid19_Korea/Vero_Infected/Guppy3.1.5_Minimap2Default/
qualityqc                 : 5
granularity               : 

GPU                       : OFF
demultiplexing            : OFF 
demultiplexing_opt        : -m pAmps-final-actrun_newdata_nanopore_UResNet20v2_model.030.h5 
demultifast5                  : null

filter                    : 
filter_opt                : 
mapper                    : minimap2
mapper_opt                : -uf -k14
map_type                  : spliced

counter                   : YES
counter_opt               : 

email                     :