file	condition	replicate_num	total_mass	norm_mass	internal_scale	external_scale
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/C57_25_sub.bam	C57	0	3.3205e+07	3.19187e+07	1.05836	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/C57_26_all.bam	C57	1	2.82007e+07	3.19187e+07	0.883847	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/C57_27_all.bam	C57	2	3.38211e+07	3.19187e+07	1.02975	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/BTBR_28_all.bam	BTBR	0	3.46661e+07	3.19187e+07	1.1289	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/BTBR_29_all.bam	BTBR	1	2.98908e+07	3.19187e+07	0.957671	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/BTBR_30_all.bam	BTBR	2	3.00334e+07	3.19187e+07	0.904025	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/shank3wt_37_sub.bam	Shank3wt	0	3.41092e+07	3.19187e+07	1.079	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/shank3wt_38_all.bam	Shank3wt	1	2.96717e+07	3.19187e+07	0.921794	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/shank3wt_39_sub.bam	Shank3wt	2	3.35042e+07	3.19187e+07	1.05192	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/shank3ko_40_sub.bam	Shank3ko	0	3.3198e+07	3.19187e+07	1.0467	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/shank3ko_41_sub.bam	Shank3ko	1	3.17177e+07	3.19187e+07	1.04048	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/shank3ko_42_all.bam	Shank3ko	2	3.44637e+07	3.19187e+07	1.09938	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/caspr2wt_32_sub.bam	Caspr2wt	0	3.21235e+07	3.19187e+07	0.99718	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/caspr2wt_33_sub.bam	Caspr2wt	1	3.20712e+07	3.19187e+07	1.01292	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/caspr2wt_31_sub.bam	Caspr2wt	2	3.2339e+07	3.19187e+07	1.0432	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/caspr2ko_34_all.bam	Caspr2ko	0	2.68316e+07	3.19187e+07	0.816917	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/caspr2ko_35_sub.bam	Caspr2ko	1	3.17796e+07	3.19187e+07	0.974256	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/caspr2ko_36_all.bam	Caspr2ko	2	3.14319e+07	3.19187e+07	0.96835	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/chr16wt_43_sub.bam	Chr16wt	0	3.28389e+07	3.19187e+07	1.03895	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/chr16wt_44_sub.bam	Chr16wt	1	3.27204e+07	3.19187e+07	0.959272	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/chr16wt_45_sub.bam	Chr16wt	2	3.30166e+07	3.19187e+07	1.00591	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/chr16df_46_sub.bam	Chr16df	0	3.33202e+07	3.19187e+07	1.06808	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/chr16df_47_sub.bam	Chr16df	1	3.20612e+07	3.19187e+07	1.01179	1
/users/bi/projects/Milana_Morgenstern/Evan_Elliott/2014-10_autism/TopHat/SubSampled/chr16df_48_sub.bam	Chr16df	2	3.32781e+07	3.19187e+07	1.05828	1