Basic Statistics
Measure | Value |
---|---|
Filename | K79me2_WNN3_7521_GCCAAT.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41647042 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC | 133555 | 0.32068303914597346 | TruSeq Adapter, Index 6 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 15155 | 0.0 | 40.189476 | 42 |
TCTCGTA | 15210 | 0.0 | 40.060204 | 41 |
TCGTATG | 15305 | 0.0 | 39.83571 | 43 |
CGTATGC | 15570 | 0.0 | 39.13916 | 44 |
CGCCAAT | 15830 | 0.0 | 38.856857 | 33 |
TATCTCG | 16035 | 0.0 | 38.20509 | 39 |
GATCGGA | 16850 | 0.0 | 37.13991 | 1 |
ATCGGAA | 16855 | 0.0 | 37.106606 | 2 |
ATCTCGT | 16450 | 0.0 | 37.067356 | 40 |
ACGCCAA | 16710 | 0.0 | 36.836693 | 32 |
GTCACGC | 17005 | 0.0 | 36.173866 | 29 |
CCAATAT | 17280 | 0.0 | 35.77083 | 35 |
CGTCTGA | 17505 | 0.0 | 35.372833 | 16 |
CAATATC | 17540 | 0.0 | 35.127674 | 36 |
GCCAATA | 17890 | 0.0 | 34.500862 | 34 |
ACACGTC | 18080 | 0.0 | 34.308945 | 13 |
ACGTCTG | 18175 | 0.0 | 34.11751 | 15 |
AGTCACG | 18160 | 0.0 | 33.910076 | 28 |
TCACGCC | 18865 | 0.0 | 32.675697 | 30 |
TCGGAAG | 19220 | 0.0 | 32.58648 | 3 |