FastQCFastQC Report
Tue 1 Mar 2016
K79me2_WEN3_7520_ATCACG.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameK79me2_WEN3_7520_ATCACG.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40699607
Sequences flagged as poor quality0
Sequence length50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTCGT27800.034.0472451
CGTCATA49850.029.08290927
CTCGTAT27000.029.01319742
CGGTATT40300.028.11381327
TCGGTAT40300.027.94760526
TTCGGTA40450.027.89807725
TCGTATG28400.027.58093843
AATTCGG42400.027.18572223
CCGATGA54900.026.48345820
TCTCGTA29750.026.40676541
ACGTCAT55650.026.12859226
GAATTCG44150.026.0583222
ATTCGGT43850.025.88543924
TAAGCCG56650.025.5490516
AGCCGAT56450.025.52248418
CGATGAC56800.025.52174621
ATGACGT58200.024.9457423
CGTATGC32950.024.17032444
ATTCGTT41950.022.7153682
TTCGTTG43150.022.1856563
Produced by FastQC (version 0.11.2)