CTCF_WNN1_8285_GCCAAT.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	CTCF_WNN1_8285_GCCAAT.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	40849047
Sequences flagged as poor quality	0
Sequence length	50
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	1641428	4.018277341941417	TruSeq Adapter, Index 6 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	175455	43.253395	1
ATCGGAA	175825	43.13091	2
TCTCGTA	174475	42.750587	41
TATCTCG	175060	42.74094	39
ACACGTC	177320	42.716305	13
CGTCTGA	177645	42.71124	16
CTCGTAT	174635	42.706642	42
CGTATGC	174880	42.636845	44
CGCCAAT	176435	42.60916	33
ACGTCTG	178540	42.51315	15
TCGGAAG	178300	42.5065	3
TCGTATG	175690	42.467834	43
ATCTCGT	175885	42.462563	40
ACGCCAA	177430	42.361538	32
GTCACGC	177570	42.323185	29
CACGTCT	179460	42.31313	14
CGGAAGA	179320	42.243813	4
AGTCACG	178190	42.180866	28
CCAATAT	178345	42.065533	35
CACACGT	180485	42.028606	12