FastQCFastQC Report
Tue 1 Mar 2016
79me2_WNN2_6754_CCGTCC.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename79me2_WNN2_6754_CCGTCC.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35711099
Sequences flagged as poor quality0
Sequence length50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTCGT14150.025.6901631
CGTCATA27850.024.32885427
TCTCGTA22100.023.4920443
CTCGTAT22100.023.29269444
TAAGCCG33350.020.77842716
CGGTATT22650.018.64786727
AGCCGAT37550.018.63009818
ACGTCAT36900.018.60048926
TCGGTAT23050.018.2288226
CCGATGA38550.018.20389220
TTCGGTA23550.017.84179725
AATTCGG24250.017.78035523
ATGACGT39200.017.6774923
CGATGAC39900.017.36743221
CCCGATC30650.016.86702238
ATTCGGT25750.016.65917624
CCGATCT31750.016.21336439
GATGACG44150.016.14397422
GAATTCG26800.016.00648522
ATCTCGT33000.015.73254842
Produced by FastQC (version 0.11.2)