FastQCFastQC Report
Fri 19 Feb 2016
WNN2_ATAC_C_6008_TAAGGCG_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameWNN2_ATAC_C_6008_TAAGGCG_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8565663
Sequences flagged as poor quality0
Sequence length50
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGCGC1252.4486544E-623.01284442
GATCGCG1904.0381565E-1022.71004542
TATACCG9750.021.4819952
TCCGCAA14100.020.94042833
ATACCGC11000.020.3486543
CCGCAAA15350.019.9077434
GTCCGCA14900.019.66933832
TCTCGCC16450.019.45906843
TTCGACG1101.1263825E-418.6942339
CGACGTA1501.2130018E-418.51427744
CGACGAA14600.018.03052923
GTCCTAC61750.017.7298971
ACCGACG14950.017.46829221
TAGTCCG16650.017.41611130
CGTCGGT5350.017.29836330
CGATCGA1250.001472193517.25963242
CCGCCAT12200.017.1687896
CCGACGA15250.017.12545422
AGTCCGC16950.016.9891131
GATCCCG3601.8189894E-1216.97996342
Produced by FastQC (version 0.11.2)