FastQCFastQC Report
Mon 6 May 2019
A549_25_3chr10_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameA549_25_3chr10_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2808343
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCAAATATCGCACATTTCTGTTTAGGCCATCTATGGCTTTCATCTCCTCT48350.17216557948939998No Hit
CTTCTCTCTTCACACTGCCATCTGCAATCTTGCTTCGGATGGCCAGTCCAA44130.1571389249817419No Hit
CTTCACACTGCCATCTGCAATCTTGCTTCGGATGGCCAGTCCAACCTGCTC31000.11038537671502378No Hit
CCGGCTTCTATTGCCAATTTGACGGCCTCTAGAGCTTTACTTTTAGGAACC28900.10290765764723184No Hit
CTCCTCTGAAGTCAACTGGAATTCAAACACCTGCACGTTCTGTCTGATGCG28460.10134089746159924No Hit

[OK]Adapter Content

Adapter graph