Left reads: Input : 28890675 Mapped : 27231540 (94.3% of input) of these: 1792319 ( 6.6%) have multiple alignments (20457 have >20) Right reads: Input : 28890675 Mapped : 27265540 (94.4% of input) of these: 1785772 ( 6.5%) have multiple alignments (20538 have >20) 94.3% overall read mapping rate. Aligned pairs: 26745498 of these: 1752288 ( 6.6%) have multiple alignments 213290 ( 0.8%) are discordant alignments 91.8% concordant pair alignment rate.