BLASTN 2.16.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: CRG5_fix.fasta 2 sequences; 3,329,724 total letters Query= KT309077.1 Brucella suis strain B.suis.2/RS/2013 insertion sequence IS711, partial sequence Length=774 Score E Sequences producing significant alignments: (Bits) Value CRG5_00002 len=1400675 cov=84.0 origname=contig_2_LN:i:1400675_RC... 1206 0.0 CRG5_00001 len=1929049 cov=88.0 origname=contig_1_LN:i:1929049_RC... 183 1e-46 >CRG5_00002 len=1400675 cov=84.0 origname=contig_2_LN:i:1400675_RC:i:21917_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1400675 Score = 1206 bits (653), Expect = 0.0 Identities = 658/660 (99%), Gaps = 2/660 (0%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1330593 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 1330534 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330533 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 1330474 Query 235 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330473 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 1330414 Query 295 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330413 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 1330354 Query 355 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330353 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 1330294 Query 415 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330293 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 1330234 Query 475 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330233 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 1330174 Query 535 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330173 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 1330114 Query 595 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330113 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 1330054 Query 655 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330053 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 1329994 Query 715 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1329993 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 1329934 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 494477 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 494536 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 494537 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 494575 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699664 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 699723 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 699724 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 699762 Score = 161 bits (87), Expect = 5e-40 Identities = 94/97 (97%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 217770 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 217829 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 211 ||||||||||||||||||||||||||||||||||||| Sbjct 217830 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 217866 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 582969 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 583028 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 583029 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 583062 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 353432 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 353373 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 353372 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 353337 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 1010072 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 1010013 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 1010012 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 1009977 >CRG5_00001 len=1929049 cov=88.0 origname=contig_1_LN:i:1929049_RC:i:31217_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1929049 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613303 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 1613362 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 1613363 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 1613401 Score = 163 bits (88), Expect = 1e-40 Identities = 93/95 (98%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 967837 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 967896 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 967897 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 967931 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 360812 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 360871 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 360872 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 360905 Score = 159 bits (86), Expect = 2e-39 Identities = 93/96 (97%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 716814 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 716873 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 |||||||||||||||||||||||||||||||||||| Sbjct 716874 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 716909 Score = 158 bits (85), Expect = 6e-39 Identities = 92/95 (97%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 790908 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 790967 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 790968 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 791002 Score = 156 bits (84), Expect = 2e-38 Identities = 91/94 (97%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 545728 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 545787 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 545788 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 545821 Score = 156 bits (84), Expect = 2e-38 Identities = 95/100 (95%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 915531 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 915590 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCC 214 ||||||||||| |||||||||||||||||||||| ||||| Sbjct 915591 ATGATCTGGTTACGTTGAATGCAGACACGCCCTAAAACCC 915630 Score = 145 bits (78), Expect = 5e-35 Identities = 89/94 (95%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 150570 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 150629 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 ||||||||||| |||| ||||||||||||||||| Sbjct 150630 ATGATCTGGTTACGTTAAATGCAGACACGCCCTA 150663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2503919360 Database: CRG5_fix.fasta Posted date: Mar 7, 2025 3:33 PM Number of letters in database: 3,329,724 Number of sequences in database: 2 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5