BLASTN 2.16.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: CRG4_fix.fasta 2 sequences; 3,328,213 total letters Query= KT309077.1 Brucella suis strain B.suis.2/RS/2013 insertion sequence IS711, partial sequence Length=774 Score E Sequences producing significant alignments: (Bits) Value CRG4_00002 len=1400673 cov=87.0 origname=contig_1_LN:i:1400673_RC... 1206 0.0 CRG4_00001 len=1927540 cov=88.0 origname=contig_2_LN:i:1927540_RC... 183 1e-46 >CRG4_00002 len=1400673 cov=87.0 origname=contig_1_LN:i:1400673_RC:i:19823_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1400673 Score = 1206 bits (653), Expect = 0.0 Identities = 658/660 (99%), Gaps = 2/660 (0%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 135993 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 135934 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135933 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 135874 Query 235 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135873 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 135814 Query 295 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135813 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 135754 Query 355 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135753 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 135694 Query 415 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135693 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 135634 Query 475 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135633 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 135574 Query 535 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135573 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 135514 Query 595 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135513 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 135454 Query 655 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135453 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 135394 Query 715 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135393 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 135334 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700550 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 700609 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 700610 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 700648 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905728 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 905787 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 905788 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 905826 Score = 161 bits (87), Expect = 5e-40 Identities = 94/97 (97%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 423844 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 423903 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 211 ||||||||||||||||||||||||||||||||||||| Sbjct 423904 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 423940 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 789033 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 789092 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 789093 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 789126 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 559506 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 559447 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 559446 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 559411 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 1216144 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 1216085 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 1216084 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 1216049 >CRG4_00001 len=1927540 cov=88.0 origname=contig_2_LN:i:1927540_RC:i:27667_XC:f:0.999741 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1927540 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613310 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 1613369 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 1613370 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 1613408 Score = 163 bits (88), Expect = 1e-40 Identities = 93/95 (98%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 967844 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 967903 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 967904 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 967938 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 360819 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 360878 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 360879 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 360912 Score = 159 bits (86), Expect = 2e-39 Identities = 93/96 (97%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 716821 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 716880 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 |||||||||||||||||||||||||||||||||||| Sbjct 716881 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 716916 Score = 158 bits (85), Expect = 6e-39 Identities = 92/95 (97%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 790915 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 790974 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 790975 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 791009 Score = 156 bits (84), Expect = 2e-38 Identities = 91/94 (97%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 545733 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 545792 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 545793 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 545826 Score = 156 bits (84), Expect = 2e-38 Identities = 95/100 (95%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 915538 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 915597 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCC 214 ||||||||||| |||||||||||||||||||||| ||||| Sbjct 915598 ATGATCTGGTTACGTTGAATGCAGACACGCCCTAAAACCC 915637 Score = 145 bits (78), Expect = 5e-35 Identities = 89/94 (95%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 150568 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 150627 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 ||||||||||| |||| ||||||||||||||||| Sbjct 150628 ATGATCTGGTTACGTTAAATGCAGACACGCCCTA 150661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2502783088 Database: CRG4_fix.fasta Posted date: Mar 7, 2025 3:33 PM Number of letters in database: 3,328,213 Number of sequences in database: 2 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5