BLASTN 2.16.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: CRG3_fix.fasta 4 sequences; 3,320,577 total letters Query= KT309077.1 Brucella suis strain B.suis.2/RS/2013 insertion sequence IS711, partial sequence Length=774 Score E Sequences producing significant alignments: (Bits) Value CRG3_00002 len=1141804 cov=84.0 origname=contig_4_LN:i:1141804_RC... 1206 0.0 CRG3_00003 len=205165 cov=92.0 origname=contig_2_LN:i:205165_RC:i... 183 1e-46 CRG3_00001 len=1927526 cov=85.0 origname=contig_1_LN:i:1927526_RC... 183 1e-46 >CRG3_00002 len=1141804 cov=84.0 origname=contig_4_LN:i:1141804_RC:i:17883_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=N Length=1141804 Score = 1206 bits (653), Expect = 0.0 Identities = 658/660 (99%), Gaps = 2/660 (0%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1082923 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 1082982 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082983 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 1083042 Query 235 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083043 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 1083102 Query 295 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083103 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 1083162 Query 355 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083163 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 1083222 Query 415 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083223 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 1083282 Query 475 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083283 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 1083342 Query 535 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083343 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 1083402 Query 595 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083403 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 1083462 Query 655 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083463 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 1083522 Query 715 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083523 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 1083582 Score = 161 bits (87), Expect = 5e-40 Identities = 94/97 (97%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 795072 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 795013 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 211 ||||||||||||||||||||||||||||||||||||| Sbjct 795012 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 794976 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 261640 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 261699 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 261700 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 261735 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 659410 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 659469 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 659470 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 659505 >CRG3_00003 len=205165 cov=92.0 origname=contig_2_LN:i:205165_RC:i:3444_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=N Length=205165 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102207 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 102266 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 102267 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 102305 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 190677 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 190736 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 190737 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 190770 >CRG3_00001 len=1927526 cov=85.0 origname=contig_1_LN:i:1927526_RC:i:31161_XC:f:0.999741 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1927526 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613296 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 1613355 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 1613356 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 1613394 Score = 163 bits (88), Expect = 1e-40 Identities = 93/95 (98%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 967831 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 967890 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 967891 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 967925 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 360813 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 360872 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 360873 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 360906 Score = 159 bits (86), Expect = 2e-39 Identities = 93/96 (97%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 716817 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 716876 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 |||||||||||||||||||||||||||||||||||| Sbjct 716877 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 716912 Score = 158 bits (85), Expect = 6e-39 Identities = 92/95 (97%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 790903 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 790962 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 790963 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 790997 Score = 156 bits (84), Expect = 2e-38 Identities = 91/94 (97%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 545729 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 545788 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 545789 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 545822 Score = 156 bits (84), Expect = 2e-38 Identities = 95/100 (95%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 915525 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 915584 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCC 214 ||||||||||| |||||||||||||||||||||| ||||| Sbjct 915585 ATGATCTGGTTACGTTGAATGCAGACACGCCCTAAAACCC 915624 Score = 145 bits (78), Expect = 5e-35 Identities = 89/94 (95%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 150560 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 150619 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 ||||||||||| |||| ||||||||||||||||| Sbjct 150620 ATGATCTGGTTACGTTAAATGCAGACACGCCCTA 150653 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2497007728 Database: CRG3_fix.fasta Posted date: Mar 7, 2025 3:33 PM Number of letters in database: 3,320,577 Number of sequences in database: 4 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5