BLASTN 2.16.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: CRG2_fix.fasta 2 sequences; 3,328,224 total letters Query= KT309077.1 Brucella suis strain B.suis.2/RS/2013 insertion sequence IS711, partial sequence Length=774 Score E Sequences producing significant alignments: (Bits) Value CRG2_00002 len=1400681 cov=82.0 origname=contig_1_LN:i:1400681_RC... 1206 0.0 CRG2_00001 len=1927543 cov=84.0 origname=contig_2_LN:i:1927543_RC... 183 1e-46 >CRG2_00002 len=1400681 cov=82.0 origname=contig_1_LN:i:1400681_RC:i:24118_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1400681 Score = 1206 bits (653), Expect = 0.0 Identities = 658/660 (99%), Gaps = 2/660 (0%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1337047 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 1336988 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336987 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 1336928 Query 235 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336927 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 1336868 Query 295 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336867 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 1336808 Query 355 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336807 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 1336748 Query 415 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336747 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 1336688 Query 475 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336687 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 1336628 Query 535 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336627 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 1336568 Query 595 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336567 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 1336508 Query 655 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336507 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 1336448 Query 715 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336447 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 1336388 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500923 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 500982 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 500983 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 501021 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706103 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 706162 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 706163 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 706201 Score = 161 bits (87), Expect = 5e-40 Identities = 94/97 (97%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 224216 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 224275 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 211 ||||||||||||||||||||||||||||||||||||| Sbjct 224276 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 224312 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 589415 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 589474 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 589475 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 589508 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 359878 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 359819 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 359818 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 359783 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 1016526 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 1016467 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 1016466 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 1016431 >CRG2_00001 len=1927543 cov=84.0 origname=contig_2_LN:i:1927543_RC:i:34145_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1927543 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613313 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 1613372 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 1613373 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 1613411 Score = 163 bits (88), Expect = 1e-40 Identities = 93/95 (98%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 967850 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 967909 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 967910 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 967944 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 360832 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 360891 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 360892 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 360925 Score = 159 bits (86), Expect = 2e-39 Identities = 93/96 (97%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 716819 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 716878 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 |||||||||||||||||||||||||||||||||||| Sbjct 716879 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 716914 Score = 158 bits (85), Expect = 6e-39 Identities = 92/95 (97%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 790921 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 790980 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 790981 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 791015 Score = 156 bits (84), Expect = 2e-38 Identities = 91/94 (97%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 545731 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 545790 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 545791 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 545824 Score = 156 bits (84), Expect = 2e-38 Identities = 95/100 (95%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 915544 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 915603 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCC 214 ||||||||||| |||||||||||||||||||||| ||||| Sbjct 915604 ATGATCTGGTTACGTTGAATGCAGACACGCCCTAAAACCC 915643 Score = 145 bits (78), Expect = 5e-35 Identities = 89/94 (95%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 150576 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 150635 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 ||||||||||| |||| ||||||||||||||||| Sbjct 150636 ATGATCTGGTTACGTTAAATGCAGACACGCCCTA 150669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2502791360 Database: CRG2_fix.fasta Posted date: Mar 7, 2025 3:33 PM Number of letters in database: 3,328,224 Number of sequences in database: 2 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5