BLASTN 2.16.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: CRG1_fix.fasta 2 sequences; 3,325,626 total letters Query= KT309077.1 Brucella suis strain B.suis.2/RS/2013 insertion sequence IS711, partial sequence Length=774 Score E Sequences producing significant alignments: (Bits) Value CRG1_00002 len=1400707 cov=86.0 origname=contig_1_LN:i:1400707_RC... 1206 0.0 CRG1_00001 len=1924919 cov=89.0 origname=contig_2_LN:i:1924919_RC... 183 1e-46 >CRG1_00002 len=1400707 cov=86.0 origname=contig_1_LN:i:1400707_RC:i:19502_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1400707 Score = 1206 bits (653), Expect = 0.0 Identities = 658/660 (99%), Gaps = 2/660 (0%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1337073 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 1337014 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1337013 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCCACTCCCTTTTATATAAAAAT 1336954 Query 235 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336953 CAGATAATATGTATTATGGAACATATCACCTTGCAACGATATTATGAGGCACTTAAGCGG 1336894 Query 295 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336893 CGACAAAAACGAGGCATGAATAAATGCTGCAATGTAACCGTTGGCAAAAAACGATAAAAC 1336834 Query 355 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336833 TTTGGCTTTTATAACCAAATCATCTCAAGGTGGAATTCAGATCGGCACCGATTAGAACCG 1336774 Query 415 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336773 CGTTCAAGACGTGATATTCCCCGCTATATCAACTGGTTATATCTATGCCGACATGTGGTC 1336714 Query 475 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336713 ACAATTGTGCGCTCATTCACAGACTAGTGCATCAGCCGGAAATGCTTTATCATTTTTCGT 1336654 Query 535 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336653 TGACATGGGGGGAGATAGAAGCTTTGGCAGCCGACGACGGATCACAATTCGTTGAGCGCA 1336594 Query 595 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336593 GACGGTGGCCACGCGTGTCGCAAGCTCCACTGGGCGAAGGGCTCACGGCAAGCCCGGCCT 1336534 Query 655 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336533 TGGTTCCGCTACGCTTCGAGACATCGAGCCTGCCGACCGACCAGCAGTTTGCCGCGTGGC 1336474 Query 715 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336473 AGGCACATATGTCCGTATTGCTGACAACGCATCTGCCAGAAAGCGCGCAGCCCGACGATG 1336414 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500926 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 500985 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 500986 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 501024 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706106 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 706165 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 706166 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 706204 Score = 161 bits (87), Expect = 5e-40 Identities = 94/97 (97%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 224217 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 224276 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 211 ||||||||||||||||||||||||||||||||||||| Sbjct 224277 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAA 224313 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 589418 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 589477 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 589478 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 589511 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 359879 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 359820 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 359819 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 359784 Score = 148 bits (80), Expect = 4e-36 Identities = 91/96 (95%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 1016548 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 1016489 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 ||||||||||| |||| ||||||||||||||||||| Sbjct 1016488 ATGATCTGGTTACGTTAAATGCAGACACGCCCTAGA 1016453 >CRG1_00001 len=1924919 cov=89.0 origname=contig_2_LN:i:1924919_RC:i:27877_XC:f:1.000000 polish=racon:1 round(s); sw=dragonflye-flye/1.2.0 date=20250212 circular=Y Length=1924919 Score = 183 bits (99), Expect = 1e-46 Identities = 99/99 (100%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613217 AGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 1613276 Query 61 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 99 ||||||||||||||||||||||||||||||||||||||| Sbjct 1613277 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGC 1613315 Score = 163 bits (88), Expect = 1e-40 Identities = 93/95 (98%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 967756 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 967815 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 967816 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 967850 Score = 161 bits (87), Expect = 5e-40 Identities = 92/94 (98%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 360824 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGCTTCGTCCATCTCGCATGCGCT 360883 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 360884 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 360917 Score = 159 bits (86), Expect = 2e-39 Identities = 93/96 (97%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 716733 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 716792 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 210 |||||||||||||||||||||||||||||||||||| Sbjct 716793 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGA 716828 Score = 158 bits (85), Expect = 6e-39 Identities = 92/95 (97%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 790827 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 790886 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 209 ||||||||||||||||||||||||||||||||||| Sbjct 790887 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAG 790921 Score = 156 bits (84), Expect = 2e-38 Identities = 91/94 (97%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 545645 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 545704 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 |||||||||||||||||||||||||||||||||| Sbjct 545705 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 545738 Score = 156 bits (84), Expect = 2e-38 Identities = 95/100 (95%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 915450 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 915509 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTAGAACCC 214 ||||||||||| |||||||||||||||||||||| ||||| Sbjct 915510 ATGATCTGGTTACGTTGAATGCAGACACGCCCTAAAACCC 915549 Score = 145 bits (78), Expect = 5e-35 Identities = 89/94 (95%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 117 GCGCTGCGATGCGAGAAAAC-TTGACC-CATTCATGGGCTTCGTCCATCTCGCATGCGCT 174 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 150568 GCGCTGCGATGCGAGAAAACATTGACCGCATTCATGGGTTTCGTCCATCTCGCATGCGCT 150627 Query 175 ATGATCTGGTTGCGTTGAATGCAGACACGCCCTA 208 ||||||||||| |||| ||||||||||||||||| Sbjct 150628 ATGATCTGGTTACGTTAAATGCAGACACGCCCTA 150661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2500837664 Database: CRG1_fix.fasta Posted date: Mar 7, 2025 3:33 PM Number of letters in database: 3,325,626 Number of sequences in database: 2 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5