[2017-10-11 15:52:02,328] multiqc [DEBUG ] No MultiQC config found: /nfs/users/bi/lcozzuto/.pyenv/versions/2.7.13/lib/python2.7/site-packages/multiqc_config.yaml [2017-10-11 15:52:02,329] multiqc [DEBUG ] No MultiQC config found: /users/bi/lcozzuto/.multiqc_config.yaml [2017-10-11 15:52:02,329] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2017-10-11 15:52:02,329] multiqc [DEBUG ] Command used: /users/bi/lcozzuto/.pyenv/versions/2.7.13/bin/multiqc . [2017-10-11 15:52:03,054] multiqc [DEBUG ] Latest MultiQC version is v1.2 [2017-10-11 15:52:03,054] multiqc [INFO ] This is MultiQC v1.3.dev0 (f36d735) [2017-10-11 15:52:03,055] multiqc [DEBUG ] Command : /users/bi/lcozzuto/.pyenv/versions/2.7.13/bin/multiqc . [2017-10-11 15:52:03,055] multiqc [DEBUG ] Working dir : /nfs/users/project/sacalalengua/test_saca2/trimmed/seqs_ori [2017-10-11 15:52:03,055] multiqc [INFO ] Template : default [2017-10-11 15:52:03,055] multiqc [INFO ] Searching '.' [2017-10-11 15:52:03,056] multiqc [DEBUG ] Analysing modules: afterqc, custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bismark, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, fastqc, clusterflow, bcl2fastq [2017-10-11 15:52:03,056] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp231xGF [2017-10-11 15:52:03,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data9_150907_HM-783D_S53_L001_R1_001.fastq.gz [2017-10-11 15:52:03,205] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0252_S1_L001_R1_001_fastqc.html [2017-10-11 15:52:03,205] multiqc [DEBUG ] Ignoring file as 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data3_150702_HM-782D_S95_L001_R1_001.fastq.gz [2017-10-11 15:52:03,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D4_S192_L001_R2_001_fastqc.html [2017-10-11 15:52:03,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0357_S4_L001_R2_001.fastq [2017-10-11 15:52:03,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data5ra_150713_HM-782D_S95_L001_R1_001_fastqc.html [2017-10-11 15:52:03,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0338_S3_L001_R2_001_fastqc.html [2017-10-11 15:52:03,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data5ra_150713_HM-783D_S191_L001_R1_001.fastq.gz [2017-10-11 15:52:03,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data5ra_150713_HM-782D_S95_L001_R1_001.fastq.gz [2017-10-11 15:52:03,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0357_S4_L001_R2_001_fastqc.html [2017-10-11 15:52:03,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data5ra_150713_HM-783D_S191_L001_R2_001.fastq.gz [2017-10-11 15:52:03,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data3_150702_HM-782D_S95_L001_R2_001.fastq.gz [2017-10-11 15:52:03,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0357_S4_L001_R1_001.fastq [2017-10-11 15:52:03,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data4ra_150706_HM-783D_S191_L001_R2_001.fastq.gz [2017-10-11 15:52:03,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data7_150724_HM-782D_S95_L001_R1_001.fastq.gz [2017-10-11 15:52:03,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0363_S5_L001_R2_001_fastqc.html [2017-10-11 15:52:03,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-782D4_S191_L001_R2_001.fastq.gz [2017-10-11 15:52:03,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data3_150702_HM-783D_S96_L001_R1_001_fastqc.html [2017-10-11 15:52:03,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data9_150907_HM-782D_S52_L001_R2_001_fastqc.html [2017-10-11 15:52:03,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data6ra_150717_HM-783D_S191_L001_R2_001_fastqc.html [2017-10-11 15:52:03,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM783D_S31_L001_R1_001_fastqc.html [2017-10-11 15:52:03,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0338_S3_L001_R1_001_fastqc.html [2017-10-11 15:52:03,483] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data6ra_150717_HM-782D_S95_L001_R1_001_fastqc.html [2017-10-11 15:52:03,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data4ra_150706_HM-782D_S95_L001_R2_001.fastq.gz [2017-10-11 15:52:03,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data4ra_150706_HM-782D_S95_L001_R1_001_fastqc.html [2017-10-11 15:52:03,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0363_S5_L001_R1_001.fastq [2017-10-11 15:52:03,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data7_150724_HM-782D_S95_L001_R2_001_fastqc.html [2017-10-11 15:52:03,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data9_150907_HM-782D_S52_L001_R1_001_fastqc.html [2017-10-11 15:52:03,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-782D_S95_L001_R2_001_fastqc.html [2017-10-11 15:52:03,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data6ra_150717_HM-783D_S191_L001_R1_001.fastq.gz [2017-10-11 15:52:03,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data9_150907_HM-782D_S52_L001_R1_001.fastq.gz [2017-10-11 15:52:03,595] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-782D3_S95_L001_R2_001.fastq.gz [2017-10-11 15:52:03,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data7_150724_HM-782D_S95_L001_R2_001.fastq.gz [2017-10-11 15:52:03,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data7_150724_HM-783D_S190_L001_R1_001.fastq.gz [2017-10-11 15:52:03,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D4_S192_L001_R1_001.fastq.gz [2017-10-11 15:52:03,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM782D_S30_L001_R1_001.fastq.gz [2017-10-11 15:52:03,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0338_S3_L001_R2_001.fastq [2017-10-11 15:52:03,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0296_S2_L001_R1_001_fastqc.html [2017-10-11 15:52:03,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data5ra_150713_HM-782D_S95_L001_R2_001_fastqc.html [2017-10-11 15:52:03,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data6ra_150717_HM-783D_S191_L001_R2_001.fastq.gz [2017-10-11 15:52:03,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D4_S192_L001_R1_001_fastqc.html [2017-10-11 15:52:03,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0363_S5_L001_R1_001_fastqc.html [2017-10-11 15:52:03,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data5ra_150713_HM-782D_S95_L001_R2_001.fastq.gz [2017-10-11 15:52:03,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data9_150907_HM-782D_S52_L001_R2_001.fastq.gz [2017-10-11 15:52:03,848] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0296_S2_L001_R1_001.fastq [2017-10-11 15:52:03,848] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data7_150724_HM-783D_S190_L001_R2_001.fastq.gz [2017-10-11 15:52:03,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-782D4_S191_L001_R1_001.fastq.gz [2017-10-11 15:52:03,889] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-783D_S190_L001_R2_001.fastq.gz [2017-10-11 15:52:03,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-783D_S190_L001_R2_001_fastqc.html [2017-10-11 15:52:03,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM782D_S30_L001_R1_001_fastqc.html [2017-10-11 15:52:04,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data9_150907_HM-783D_S53_L001_R1_001_fastqc.html [2017-10-11 15:52:04,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0338_S3_L001_R1_001.fastq [2017-10-11 15:52:04,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-782D_S95_L001_R2_001.fastq.gz [2017-10-11 15:52:04,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM782D_S30_L001_R2_001.fastq.gz [2017-10-11 15:52:04,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data3_150702_HM-783D_S96_L001_R1_001.fastq.gz [2017-10-11 15:52:04,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D3_S96_L001_R2_001_fastqc.html [2017-10-11 15:52:04,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-782D_S95_L001_R1_001.fastq.gz [2017-10-11 15:52:04,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D3_S96_L001_R2_001.fastq.gz [2017-10-11 15:52:04,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM782D_S30_L001_R2_001_fastqc.html [2017-10-11 15:52:04,345] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0252_S1_L001_R1_001.fastq [2017-10-11 15:52:04,345] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data3_150702_HM-783D_S96_L001_R2_001_fastqc.html [2017-10-11 15:52:04,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM783D_S31_L001_R2_001_fastqc.html [2017-10-11 15:52:04,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data6ra_150717_HM-783D_S191_L001_R1_001_fastqc.html [2017-10-11 15:52:04,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data3_150702_HM-782D_S95_L001_R2_001_fastqc.html [2017-10-11 15:52:04,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-782D_S95_L001_R1_001_fastqc.html [2017-10-11 15:52:04,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0357_S4_L001_R1_001_fastqc.html [2017-10-11 15:52:04,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0363_S5_L001_R2_001.fastq [2017-10-11 15:52:04,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data3_150702_HM-783D_S96_L001_R2_001.fastq.gz [2017-10-11 15:52:04,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0252_S1_L001_R2_001_fastqc.html [2017-10-11 15:52:04,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0296_S2_L001_R2_001_fastqc.html [2017-10-11 15:52:04,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-783D_S190_L001_R1_001_fastqc.html [2017-10-11 15:52:04,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data6ra_150717_HM-782D_S95_L001_R1_001.fastq.gz [2017-10-11 15:52:04,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data8_150727_HM-783D_S190_L001_R1_001.fastq.gz [2017-10-11 15:52:04,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D4_S192_L001_R2_001.fastq.gz [2017-10-11 15:52:04,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data3_150702_HM-782D_S95_L001_R1_001_fastqc.html [2017-10-11 15:52:04,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D3_S96_L001_R1_001_fastqc.html [2017-10-11 15:52:04,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM783D_S31_L001_R1_001.fastq.gz [2017-10-11 15:52:04,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-783D3_S96_L001_R1_001.fastq.gz [2017-10-11 15:52:04,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data7_150724_HM-783D_S190_L001_R1_001_fastqc.html [2017-10-11 15:52:04,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data4ra_150706_HM-783D_S191_L001_R2_001_fastqc.html [2017-10-11 15:52:04,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data4ra_150706_HM-783D_S191_L001_R1_001_fastqc.html [2017-10-11 15:52:04,998] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21101-HM783D_S31_L001_R2_001.fastq.gz [2017-10-11 15:52:05,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-782D3_S95_L001_R1_001.fastq.gz [2017-10-11 15:52:05,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data4ra_150706_HM-782D_S95_L001_R1_001.fastq.gz [2017-10-11 15:52:05,083] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data1_150619_SLL-0115-0252_S1_L001_R2_001.fastq [2017-10-11 15:52:05,083] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-782D3_S95_L001_R2_001_fastqc.html [2017-10-11 15:52:05,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data6ra_150717_HM-782D_S95_L001_R2_001_fastqc.html [2017-10-11 15:52:05,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data5ra_150713_HM-783D_S191_L001_R1_001_fastqc.html [2017-10-11 15:52:05,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data9_150907_HM-783D_S53_L001_R2_001_fastqc.html [2017-10-11 15:52:05,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: data2_150623_HM-782D3_S95_L001_R1_001_fastqc.html [2017-10-11 15:52:05,740] multiqc.modules.afterqc.afterqc [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,759] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found [2017-10-11 15:52:05,773] multiqc.modules.conpair.conpair [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,786] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,800] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,817] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2017-10-11 15:52:05,817] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,830] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('.',) [2017-10-11 15:52:05,842] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,855] multiqc.modules.qorts.qorts [DEBUG ] Could not find any QoRTs data in ('.',) [2017-10-11 15:52:05,867] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('.',) [2017-10-11 15:52:05,879] multiqc.modules.rsem.rsem [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,901] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,913] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,925] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('.',) [2017-10-11 15:52:05,936] multiqc.modules.disambiguate.disambiguate [DEBUG ] Could not find any data in ('.',) [2017-10-11 15:52:05,949] multiqc.modules.homer.homer [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,961] multiqc.modules.macs2.macs2 [DEBUG ] Could not find any MACS2 data in ('.',) [2017-10-11 15:52:05,972] multiqc.modules.theta2.theta2 [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:05,984] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('.',) [2017-10-11 15:52:05,998] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,010] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,022] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,034] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,059] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,073] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('.',) [2017-10-11 15:52:06,084] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('.',) [2017-10-11 15:52:06,101] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,113] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,124] multiqc.modules.jellyfish.jellyfish [DEBUG ] Could not find any data in ('.',) [2017-10-11 15:52:06,140] multiqc.modules.vcftools.vcftools [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,152] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,164] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('.',) [2017-10-11 15:52:06,175] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('.',) [2017-10-11 15:52:06,187] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,198] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. [2017-10-11 15:52:06,209] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,220] multiqc.modules.hisat2.hisat2 [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,230] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,240] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,250] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,261] multiqc.modules.leehom.leehom [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,271] multiqc.modules.adapterRemoval.adapterRemoval [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,282] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,292] multiqc.modules.flexbar.flexbar [DEBUG ] Could not find any Flexbar data in ('.',) [2017-10-11 15:52:06,303] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('.',) [2017-10-11 15:52:06,313] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('.',) [2017-10-11 15:52:06,324] multiqc.modules.sortmerna.sortmerna [DEBUG ] Could not find any SortMeRNA data in ('.',) [2017-10-11 15:52:06,334] multiqc.modules.biobloomtools.biobloomtools [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:06,345] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:12,316] multiqc.modules.fastqc.fastqc [INFO ] Found 47 reports [2017-10-11 15:52:17,455] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('.',) [2017-10-11 15:52:17,461] multiqc.modules.bcl2fastq.bcl2fastq [DEBUG ] Could not find any bcl2fastq data in ('.',) [2017-10-11 15:52:17,524] multiqc [INFO ] Compressing plot data [2017-10-11 15:52:20,458] multiqc [INFO ] Report : multiqc_report.html [2017-10-11 15:52:20,458] multiqc [INFO ] Data : multiqc_data [2017-10-11 15:52:20,461] multiqc [DEBUG ] Moving data file from '/tmp/tmp231xGF/multiqc_data/multiqc_data.json' to '/nfs/users/project/sacalalengua/test_saca2/trimmed/seqs_ori/multiqc_data' [2017-10-11 15:52:20,482] multiqc [DEBUG ] Moving data file from '/tmp/tmp231xGF/multiqc_data/multiqc_sources.txt' to '/nfs/users/project/sacalalengua/test_saca2/trimmed/seqs_ori/multiqc_data' [2017-10-11 15:52:20,489] multiqc [DEBUG ] Moving data file from '/tmp/tmp231xGF/multiqc_data/multiqc_general_stats.txt' to '/nfs/users/project/sacalalengua/test_saca2/trimmed/seqs_ori/multiqc_data' [2017-10-11 15:52:20,496] multiqc [DEBUG ] Moving data file from '/tmp/tmp231xGF/multiqc_data/multiqc_fastqc.txt' to '/nfs/users/project/sacalalengua/test_saca2/trimmed/seqs_ori/multiqc_data' [2017-10-11 15:52:20,789] multiqc [INFO ] MultiQC complete