scaffold842_cov62	11739	.	G	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=25;Dels=0.00;ExcessHet=3.0103;FS=13.262;HaplotypeScore=9.8293;MLEAC=1;MLEAF=0.500;MQ=60.43;MQ0=0;MQRankSum=0.967;QD=16.43;ReadPosRankSum=-1.809;SOR=1.617;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_11604_11933|GENE_EXON_scaffold842_cov62_11604_11933|transcript|Soaet10008433|protein_coding|2/2|c.306C>A|p.Gly102Gly|306/441|306/441|102/146||,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_12895_13053|GENE_EXON_scaffold842_cov62_12895_13053|transcript|Soaet10008434|protein_coding||c.*1156C>A|||||1156|	GT:AD:DP:GQ:PL	0/1:11,14:25:99:439,0,281	scaffold842_cov62	GLEAN	mRNA	11604	12389	1.00	-	.	ID=Soaet10008433
scaffold842_cov62	11745	.	A	ACTGCCG	1020.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;DP=24;ExcessHet=3.0103;FS=14.233;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.003;QD=21.27;ReadPosRankSum=-2.174;SOR=2.049;ANN=ACTGCCG|disruptive_inframe_insertion|MODERATE|EXON_scaffold842_cov62_11604_11933|GENE_EXON_scaffold842_cov62_11604_11933|transcript|Soaet10008433|protein_coding|2/2|c.299_300insCGGCAG|p.Tyr100_Gly101insGlySer|299/441|299/441|100/146||,ACTGCCG|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_12895_13053|GENE_EXON_scaffold842_cov62_12895_13053|transcript|Soaet10008434|protein_coding||c.*1149_*1150insCGGCAG|||||1149|	GT:AD:DP:GQ:PL	0/1:11,13:24:99:1058,0,947	scaffold842_cov62	GLEAN	mRNA	11604	12389	1.00	-	.	ID=Soaet10008433
scaffold842_cov62	12388	.	A	AT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.674;QD=7.87;RPA=9,10;RU=T;ReadPosRankSum=0.303;SOR=0.850;STR;ANN=AT|frameshift_variant&start_lost|HIGH|EXON_scaffold842_cov62_11604_11933|GENE_EXON_scaffold842_cov62_11604_11933|transcript|Soaet10008433|protein_coding|1/2|c.1dupA|p.Met1fs|1/441|1/441|1/146||,AT|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_12895_13053|GENE_EXON_scaffold842_cov62_12895_13053|transcript|Soaet10008434|protein_coding||c.*506dupA|||||506|;LOF=(EXON_scaffold842_cov62_11604_11933|GENE_EXON_scaffold842_cov62_11604_11933|1|1.00)	GT:AD:DP:GQ:PL	0/1:5,5:14:99:116,0,114	scaffold842_cov62	GLEAN	mRNA	11604	12389	1.00	-	.	ID=Soaet10008433
scaffold842_cov62	50251	.	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-2.048;QD=16.53;ReadPosRankSum=0.921;SOR=0.951;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/8|c.17C>T|p.Thr6Ile|17/939|17/939|6/312||	GT:AD:DP:GQ:PL	0/1:17,22:39:99:673,0,429	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50259	.	G	A	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.229;HaplotypeScore=7.9989;MLEAC=1;MLEAF=0.500;MQ=57.84;MQ0=0;MQRankSum=-2.278;QD=17.30;ReadPosRankSum=1.828;SOR=0.951;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/8|c.25G>A|p.Val9Ile|25/939|25/939|9/312||	GT:AD:DP:GQ:PL	0/1:17,22:39:99:703,0,426	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50268	.	C	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.559;HaplotypeScore=7.9989;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-3.630;QD=4.39;ReadPosRankSum=1.150;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/8|c.34C>G|p.Pro12Ala|34/939|34/939|12/312||	GT:AD:DP:GQ:PL	0/1:32,8:40:99:204,0,891	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50271	.	G	A	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.755;HaplotypeScore=7.9989;MLEAC=1;MLEAF=0.500;MQ=57.43;MQ0=0;MQRankSum=-2.901;QD=16.80;ReadPosRankSum=1.718;SOR=0.738;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/8|c.37G>A|p.Gly13Arg|37/939|37/939|13/312||	GT:AD:DP:GQ:PL	0/1:17,25:42:99:734,0,384	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50281	.	A	G	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=39;Dels=0.00;ExcessHet=3.0103;FS=10.184;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=56.76;MQ0=0;MQRankSum=-2.824;QD=18.74;ReadPosRankSum=1.362;SOR=0.843;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/8|c.47A>G|p.Asp16Gly|47/939|47/939|16/312||	GT:AD:DP:GQ:PL	0/1:14,25:39:99:759,0,366	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50313	.	A	T	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=36;Dels=0.00;ExcessHet=3.0103;FS=7.781;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=53.45;MQ0=0;MQRankSum=-3.309;QD=19.44;ReadPosRankSum=0.911;SOR=0.565;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.51+28A>T||||||	GT:AD:DP:GQ:PL	0/1:11,25:36:99:728,0,287	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50320	.	G	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DP=34;Dels=0.00;ExcessHet=3.0103;FS=6.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.85;MQ0=0;MQRankSum=-3.330;QD=18.82;ReadPosRankSum=0.000;SOR=0.893;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.51+35G>C||||||	GT:AD:DP:GQ:PL	0/1:9,25:34:99:668,0,225	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50322	.	T	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=-3.366;QD=20.41;ReadPosRankSum=-0.633;SOR=0.590;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.51+37T>C||||||	GT:AD:DP:GQ:PL	0/1:8,23:31:99:661,0,221	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50338	.	A	G	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=7.9978;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-1.078;QD=11.61;ReadPosRankSum=-0.914;SOR=0.780;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.51+53A>G||||||	GT:AD:DP:GQ:PL	0/1:17,14:31:99:388,0,547	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50339	.	A	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.634;HaplotypeScore=7.9978;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-3.313;QD=20.99;ReadPosRankSum=-0.305;SOR=0.544;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.51+54A>T||||||	GT:AD:DP:GQ:PL	0/1:9,22:31:99:679,0,260	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50367	.	C	T	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=-2.730;QD=20.37;ReadPosRankSum=-0.205;SOR=0.922;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.51+82C>T||||||	GT:AD:DP:GQ:PL	0/1:10,27:37:99:782,0,253	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50409	.	T	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.283;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=-2.796;QD=17.64;ReadPosRankSum=0.775;SOR=0.648;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.52-69T>A||||||	GT:AD:DP:GQ:PL	0/1:14,28:42:99:769,0,347	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50410	.	C	A	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=-2.703;QD=18.90;ReadPosRankSum=0.463;SOR=0.728;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.52-68C>A||||||	GT:AD:DP:GQ:PL	0/1:13,28:41:99:803,0,321	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50416	.	T	G	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.42;MQ0=0;MQRankSum=-2.630;QD=18.99;ReadPosRankSum=-0.363;SOR=0.569;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.52-62T>G||||||	GT:AD:DP:GQ:PL	0/1:13,32:45:99:883,0,315	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50425	.	G	T	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-2.450;QD=18.97;ReadPosRankSum=-0.305;SOR=0.569;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.52-53G>T||||||	GT:AD:DP:GQ:PL	0/1:13,30:43:99:844,0,276	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50430	.	G	A	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.96;MQ0=0;MQRankSum=-2.305;QD=18.20;ReadPosRankSum=-0.371;SOR=0.569;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.52-48G>A||||||	GT:AD:DP:GQ:PL	0/1:13,30:43:99:811,0,321	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50461	.	AT	A	815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;DP=46;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-1.214;QD=18.54;RPA=4,3;RU=T;ReadPosRankSum=1.707;SOR=0.544;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.52-16delT||||||	GT:AD:DP:GQ:PL	0/1:19,25:46:99:853,0,617	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50472	.	A	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.460;HaplotypeScore=24.1959;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-1.315;QD=15.42;ReadPosRankSum=1.994;SOR=0.368;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|1/7|c.52-6A>T||||||	GT:AD:DP:GQ:PL	0/1:23,26:49:99:784,0,571	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50479	.	C	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.088;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-1.266;QD=14.15;ReadPosRankSum=1.449;SOR=0.458;ANN=A|missense_variant&splice_region_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/8|c.53C>A|p.Ala18Glu|53/939|53/939|18/312||	GT:AD:DP:GQ:PL	0/1:23,28:51:99:750,0,610	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50509	.	T	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-1.761;QD=14.96;ReadPosRankSum=-1.242;SOR=0.741;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/8|c.83T>C|p.Val28Ala|83/939|83/939|28/312||	GT:AD:DP:GQ:PL	0/1:24,32:56:99:866,0,608	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50513	.	C	T	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-1.939;QD=15.26;ReadPosRankSum=-1.643;SOR=0.701;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/8|c.87C>T|p.Asp29Asp|87/939|87/939|29/312||	GT:AD:DP:GQ:PL	0/1:25,35:60:99:944,0,641	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50530	.	T	C	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.016;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=-2.000;QD=16.81;ReadPosRankSum=-1.594;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/8|c.104T>C|p.Val35Ala|104/939|104/939|35/312||	GT:AD:DP:GQ:PL	0/1:25,33:58:99:1003,0,665	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50546	.	T	C	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.039;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-1.697;QD=17.94;ReadPosRankSum=-1.408;SOR=0.487;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/8|c.120T>C|p.Phe40Phe|120/939|120/939|40/312||	GT:AD:DP:GQ:PL	0/1:23,33:56:99:1033,0,556	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50552	.	A	T	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=-1.686;QD=18.03;ReadPosRankSum=-1.057;SOR=0.598;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/8|c.126A>T|p.Thr42Thr|126/939|126/939|42/312||	GT:AD:DP:GQ:PL	0/1:22,32:54:99:1002,0,515	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50554	.	A	T	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-1.697;QD=17.66;ReadPosRankSum=-0.750;SOR=0.582;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/8|c.128A>T|p.Tyr43Phe|128/939|128/939|43/312||	GT:AD:DP:GQ:PL	0/1:23,33:56:99:1017,0,570	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50578	.	G	A	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-1.460;QD=16.13;ReadPosRankSum=0.805;SOR=0.720;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/7|c.139+13G>A||||||	GT:AD:DP:GQ:PL	0/1:24,34:58:99:964,0,591	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50609	.	C	T	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-1.529;QD=18.67;ReadPosRankSum=0.437;SOR=0.799;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/7|c.139+44C>T||||||	GT:AD:DP:GQ:PL	0/1:21,37:58:99:1111,0,599	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50626	.	C	T	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-1.386;QD=17.07;ReadPosRankSum=0.462;SOR=0.607;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/7|c.140-48C>T||||||	GT:AD:DP:GQ:PL	0/1:21,33:54:99:950,0,647	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50628	.	A	G	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.036;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-1.397;QD=17.25;ReadPosRankSum=0.495;SOR=0.493;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/7|c.140-46A>G||||||	GT:AD:DP:GQ:PL	0/1:22,34:56:99:994,0,649	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50664	.	A	G	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.855;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-0.751;QD=17.76;ReadPosRankSum=-1.449;SOR=1.195;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|2/7|c.140-10A>G||||||	GT:AD:DP:GQ:PL	0/1:20,32:52:99:952,0,613	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50687	.	G	A	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.907;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-0.838;QD=15.34;ReadPosRankSum=-0.503;SOR=1.289;ANN=A|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|3/8|c.153G>A|p.Pro51Pro|153/939|153/939|51/312||	GT:AD:DP:GQ:PL	0/1:23,30:53:99:841,0,701	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50765	.	C	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-1.279;QD=17.41;ReadPosRankSum=-0.430;SOR=0.498;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|3/7|c.220+11C>T||||||	GT:AD:DP:GQ:PL	0/1:21,25:46:99:829,0,603	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50776	.	C	T	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.419;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-2.295;QD=18.01;ReadPosRankSum=-0.802;SOR=0.383;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|3/7|c.220+22C>T||||||	GT:AD:DP:GQ:PL	0/1:21,31:52:99:965,0,565	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50786	.	C	T	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.237;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-2.364;QD=17.92;ReadPosRankSum=-0.320;SOR=0.249;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|3/7|c.220+32C>T||||||	GT:AD:DP:GQ:PL	0/1:19,31:50:99:924,0,542	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50809	.	A	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DP=50;Dels=0.00;ExcessHet=3.0103;FS=11.278;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-2.589;QD=16.62;ReadPosRankSum=0.192;SOR=0.800;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|3/7|c.221-32A>G||||||	GT:AD:DP:GQ:PL	0/1:18,32:50:99:859,0,524	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50826	.	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DP=52;Dels=0.00;ExcessHet=3.0103;FS=11.571;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-3.074;QD=17.46;ReadPosRankSum=1.768;SOR=1.136;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|3/7|c.221-15G>A||||||	GT:AD:DP:GQ:PL	0/1:19,33:52:99:936,0,460	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50828	.	C	T	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DP=51;Dels=0.00;ExcessHet=3.0103;FS=13.995;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-3.012;QD=17.90;ReadPosRankSum=1.100;SOR=0.987;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|3/7|c.221-13C>T||||||	GT:AD:DP:GQ:PL	0/1:17,34:51:99:941,0,451	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50844	.	C	T	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DP=51;Dels=0.00;ExcessHet=3.0103;FS=12.061;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=-3.260;QD=18.96;ReadPosRankSum=1.262;SOR=0.926;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.224C>T|p.Ser75Leu|224/939|224/939|75/312||	GT:AD:DP:GQ:PL	0/1:15,36:51:99:995,0,417	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50851	.	G	A	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;DP=51;Dels=0.00;ExcessHet=3.0103;FS=9.117;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=-3.389;QD=20.64;ReadPosRankSum=0.765;SOR=0.974;ANN=A|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.231G>A|p.Ala77Ala|231/939|231/939|77/312||	GT:AD:DP:GQ:PL	0/1:15,36:51:99:1081,0,376	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50883	.	T	C	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;DP=49;Dels=0.00;ExcessHet=3.0103;FS=6.617;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.26;MQ0=0;MQRankSum=-4.576;QD=20.77;ReadPosRankSum=0.704;SOR=1.462;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.263T>C|p.Met88Thr|263/939|263/939|88/312||	GT:AD:DP:GQ:PL	0/1:16,33:49:99:1046,0,368	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50884	.	G	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=50;Dels=0.00;ExcessHet=3.0103;FS=6.397;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.40;MQ0=0;MQRankSum=-4.689;QD=20.04;ReadPosRankSum=0.892;SOR=1.500;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.264G>C|p.Met88Ile|264/939|264/939|88/312||	GT:AD:DP:GQ:PL	0/1:17,33:50:99:1030,0,441	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50885	.	T	G	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.541;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.40;MQ0=0;MQRankSum=-4.689;QD=19.76;ReadPosRankSum=0.830;SOR=1.500;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.265T>G|p.Ser89Ala|265/939|265/939|89/312||	GT:AD:DP:GQ:PL	0/1:17,33:50:99:1016,0,395	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50889	.	G	A	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;DP=50;Dels=0.00;ExcessHet=3.0103;FS=6.397;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=52.83;MQ0=0;MQRankSum=-4.014;QD=19.92;ReadPosRankSum=0.615;SOR=1.500;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.269G>A|p.Ser90Asn|269/939|269/939|90/312||	GT:AD:DP:GQ:PL	0/1:17,33:50:99:1024,0,451	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50906	.	C	A	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.562;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=53.05;MQ0=0;MQRankSum=-3.723;QD=20.19;ReadPosRankSum=-1.857;SOR=1.206;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.286C>A|p.Arg96Ser|286/939|286/939|96/312||	GT:AD:DP:GQ:PL	0/1:16,41:57:99:1179,0,410	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50929	.	G	C	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.208;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=0;MQRankSum=-3.806;QD=20.69;ReadPosRankSum=-1.806;SOR=0.602;ANN=C|missense_variant&splice_region_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/8|c.309G>C|p.Lys103Asn|309/939|309/939|103/312||	GT:AD:DP:GQ:PL	0/1:14,38:52:99:1104,0,383	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50947	.	C	T	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=52.71;MQ0=0;MQRankSum=-2.970;QD=21.74;ReadPosRankSum=-1.135;SOR=0.804;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+16C>T||||||	GT:AD:DP:GQ:PL	0/1:14,36:50:99:1115,0,364	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50957	.	C	T	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4899;MLEAC=1;MLEAF=0.500;MQ=53.29;MQ0=0;MQRankSum=-2.774;QD=21.35;ReadPosRankSum=-0.928;SOR=0.850;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+26C>T||||||	GT:AD:DP:GQ:PL	0/1:14,39:54:99:1160,0,327	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50967	.	TGG	T	1751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DP=55;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=53.42;MQ0=0;MQRankSum=-2.602;QD=32.44;ReadPosRankSum=0.425;SOR=0.902;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+37_311+38delGG||||||	GT:AD:DP:GQ:PL	0/1:14,40:55:99:1789,0,592	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50973	.	A	G	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=0;MQRankSum=-2.219;QD=23.33;ReadPosRankSum=0.703;SOR=0.660;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+42A>G||||||	GT:AD:DP:GQ:PL	0/1:13,38:52:99:1218,0,257	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50976	.	G	A	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=0;MQRankSum=-2.705;QD=22.04;ReadPosRankSum=0.855;SOR=0.608;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+45G>A||||||	GT:AD:DP:GQ:PL	0/1:11,39:51:99:1130,0,259	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	50994	.	A	C	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=55.55;MQ0=0;MQRankSum=-1.554;QD=22.45;ReadPosRankSum=1.569;SOR=0.551;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+63A>C||||||	GT:AD:DP:GQ:PL	0/1:11,42:53:99:1218,0,195	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51023	.	A	AAT	1505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQ0=0;MQRankSum=-1.250;QD=28.11;RPA=2,3;RU=AT;ReadPosRankSum=1.773;SOR=0.538;STR;ANN=AAT|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+92_311+93insAT||||||	GT:AD:DP:GQ:PL	0/1:7,35:48:99:1543,0,203	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51032	.	A	C	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.336;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=-1.429;QD=23.70;ReadPosRankSum=2.527;SOR=0.484;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+101A>C||||||	GT:AD:DP:GQ:PL	0/1:10,38:48:99:1166,0,196	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51057	.	T	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.186;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.770;QD=22.32;ReadPosRankSum=1.535;SOR=0.927;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+126T>A||||||	GT:AD:DP:GQ:PL	0/1:14,36:51:99:1144,0,376	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51076	.	G	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.086;HaplotypeScore=21.5772;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-1.962;QD=8.18;ReadPosRankSum=0.972;SOR=0.878;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+145G>A||||||	GT:AD:DP:GQ:PL	0/1:41,18:59:99:511,0,1134	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51085	.	T	C	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.100;HaplotypeScore=22.7444;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.554;QD=20.53;ReadPosRankSum=-1.547;SOR=0.455;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+154T>C||||||	GT:AD:DP:GQ:PL	0/1:17,45:62:99:1301,0,438	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51107	.	A	C	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.549;HaplotypeScore=4.5279;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-1.441;QD=21.64;ReadPosRankSum=-1.976;SOR=0.399;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+176A>C||||||	GT:AD:DP:GQ:PL	0/1:15,38:53:99:1175,0,373	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51124	.	T	C	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.728;QD=20.70;ReadPosRankSum=0.789;SOR=0.818;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+193T>C||||||	GT:AD:DP:GQ:PL	0/1:18,32:50:99:1063,0,378	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51132	.	C	T	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.805;QD=19.20;ReadPosRankSum=1.530;SOR=0.659;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+201C>T||||||	GT:AD:DP:GQ:PL	0/1:19,31:50:99:988,0,412	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51149	.	GTTA	G	1485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;DP=48;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-1.432;QD=31.61;RPA=2,1;RU=TTA;ReadPosRankSum=1.551;SOR=0.757;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+219_311+221delTTA||||||	GT:AD:DP:GQ:PL	0/1:19,28:48:99:1523,0,988	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51165	.	G	A	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-1.673;QD=18.50;ReadPosRankSum=-0.414;SOR=0.608;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+234G>A||||||	GT:AD:DP:GQ:PL	0/1:18,34:52:99:990,0,395	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51197	.	A	C	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.915;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=-1.250;QD=22.31;ReadPosRankSum=-1.247;SOR=0.663;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+266A>C||||||	GT:AD:DP:GQ:PL	0/1:13,25:38:99:876,0,289	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51220	.	GATATAGCTCCACGATTTCTTCTCCCTTCCCATATTAC	G	2810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;DP=31;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-1.546;QD=12.66;ReadPosRankSum=2.540;SOR=0.086;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.311+290_312-317delATATAGCTCCACGATTTCTTCTCCCTTCCCATATTAC||||||	GT:AD:DP:GQ:PL	0/1:10,8:31:99:2848,0,3067	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51261	.	T	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=55.0403;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.969;QD=20.42;ReadPosRankSum=-0.096;SOR=0.437;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-313T>C||||||	GT:AD:DP:GQ:PL	0/1:11,22:33:99:702,0,292	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51310	.	G	A	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.972;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-0.429;QD=23.08;ReadPosRankSum=0.415;SOR=1.287;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-264G>A||||||	GT:AD:DP:GQ:PL	0/1:7,28:35:99:836,0,167	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51358	.	T	C	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.83;ReadPosRankSum=1.040;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-216T>C||||||	GT:AD:DP:GQ:PL	0/1:8,23:31:99:643,0,189	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51384	.	A	G	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;DP=30;Dels=0.00;ExcessHet=3.0103;FS=9.956;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.39;ReadPosRankSum=-0.117;SOR=1.086;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-190A>G||||||	GT:AD:DP:GQ:PL	0/1:8,22:30:99:700,0,183	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51390	.	GT	G	777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;DP=29;ExcessHet=3.0103;FS=6.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.78;ReadPosRankSum=-0.051;SOR=0.820;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-183delT||||||	GT:AD:DP:GQ:PL	0/1:8,20:29:99:815,0,279	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51437	.	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.617;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.28;ReadPosRankSum=-1.403;SOR=0.430;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-137G>A||||||	GT:AD:DP:GQ:PL	0/1:9,19:28:99:540,0,271	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51459	.	A	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.550;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.61;ReadPosRankSum=-0.803;SOR=0.542;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-115A>G||||||	GT:AD:DP:GQ:PL	0/1:10,19:29:99:597,0,303	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51520	.	C	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.464;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.02;ReadPosRankSum=1.872;SOR=1.037;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-54C>G||||||	GT:AD:DP:GQ:PL	0/1:10,24:34:99:675,0,288	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51571	.	T	C	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-0.773;QD=20.51;ReadPosRankSum=-0.926;SOR=0.756;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|4/7|c.312-3T>C||||||	GT:AD:DP:GQ:PL	0/1:10,31:41:99:869,0,284	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51602	.	A	G	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.041;HaplotypeScore=7.1998;MLEAC=1;MLEAF=0.500;MQ=58.52;MQ0=0;MQRankSum=-0.974;QD=16.71;ReadPosRankSum=-0.089;SOR=1.149;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/8|c.340A>G|p.Thr114Ala|340/939|340/939|114/312||	GT:AD:DP:GQ:PL	0/1:13,26:40:99:680,0,377	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51616	.	G	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.666;QD=16.15;ReadPosRankSum=0.077;SOR=1.058;ANN=A|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/8|c.354G>A|p.Arg118Arg|354/939|354/939|118/312||	GT:AD:DP:GQ:PL	0/1:13,25:38:99:642,0,365	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51622	.	T	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.720;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=0.038;QD=16.84;ReadPosRankSum=0.099;SOR=1.096;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/8|c.360T>C|p.Ser120Ser|360/939|360/939|120/312||	GT:AD:DP:GQ:PL	0/1:14,26:40:99:702,0,374	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51685	.	C	T	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=58;Dels=0.00;ExcessHet=3.0103;FS=13.462;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=5;MQRankSum=1.057;QD=10.29;ReadPosRankSum=0.776;SOR=1.575;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.408+15C>T||||||	GT:AD:DP:GQ:PL	0/1:32,26:58:99:625,0,745	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51695	.	A	G	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DP=56;Dels=0.00;ExcessHet=3.0103;FS=12.969;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=5;MQRankSum=1.100;QD=10.91;ReadPosRankSum=0.958;SOR=1.372;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.408+25A>G||||||	GT:AD:DP:GQ:PL	0/1:32,24:56:99:639,0,739	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51706	.	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;DP=54;Dels=0.00;ExcessHet=3.0103;FS=17.610;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.94;MQ0=4;MQRankSum=-0.547;QD=4.83;ReadPosRankSum=-1.564;SOR=2.802;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.408+36C>T||||||	GT:AD:DP:GQ:PL	0/1:37,17:54:99:289,0,1045	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51724	.	A	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=48;Dels=0.00;ExcessHet=3.0103;FS=8.742;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.35;MQ0=2;MQRankSum=-1.210;QD=11.04;ReadPosRankSum=-0.358;SOR=1.103;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.409-51A>G||||||	GT:AD:DP:GQ:PL	0/1:29,19:48:99:558,0,792	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51751	.	C	T	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.248;HaplotypeScore=30.8028;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.639;QD=21.41;ReadPosRankSum=2.455;SOR=1.085;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.409-24C>T||||||	GT:AD:DP:GQ:PL	0/1:14,34:48:99:1056,0,353	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51755	.	A	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DP=47;Dels=0.00;ExcessHet=3.0103;FS=14.620;HaplotypeScore=31.7187;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=1;MQRankSum=-1.392;QD=9.85;ReadPosRankSum=0.658;SOR=1.453;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.409-20A>C||||||	GT:AD:DP:GQ:PL	0/1:31,16:47:99:491,0,868	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51760	.	T	TTCA	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;DP=45;ExcessHet=3.0103;FS=15.446;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-1.345;QD=17.86;ReadPosRankSum=-0.098;SOR=1.447;ANN=TTCA|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.409-15_409-14insTCA||||||	GT:AD:DP:GQ:PL	0/1:28,16:44:99:823,0,1509	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51768	.	G	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.751;HaplotypeScore=2.6961;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=2;MQRankSum=-3.453;QD=11.95;ReadPosRankSum=-0.568;SOR=0.571;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.409-7G>A||||||	GT:AD:DP:GQ:PL	0/1:28,19:47:99:590,0,674	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51771	.	A	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.727;HaplotypeScore=3.6120;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=2;MQRankSum=-3.453;QD=11.87;ReadPosRankSum=-0.581;SOR=0.571;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|5/7|c.409-4A>G||||||	GT:AD:DP:GQ:PL	0/1:28,19:47:99:586,0,685	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51778	.	C	G	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DP=53;Dels=0.00;ExcessHet=3.0103;FS=11.368;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=56.91;MQ0=2;MQRankSum=-3.790;QD=10.66;ReadPosRankSum=0.572;SOR=0.503;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.412C>G|p.Gln138Glu|412/939|412/939|138/312||	GT:AD:DP:GQ:PL	0/1:34,19:53:99:593,0,950	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51799	.	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=61;Dels=0.00;ExcessHet=3.0103;FS=4.112;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=2;MQRankSum=-4.953;QD=9.26;ReadPosRankSum=0.544;SOR=0.264;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.433G>A|p.Asp145Asn|433/939|433/939|145/312||	GT:AD:DP:GQ:PL	0/1:41,20:61:99:593,0,1148	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51816	.	T	C	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.456;HaplotypeScore=19.5328;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=1;MQRankSum=-4.897;QD=8.44;ReadPosRankSum=-1.086;SOR=0.338;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.450T>C|p.Asp150Asp|450/939|450/939|150/312||	GT:AD:DP:GQ:PL	0/1:39,20:59:99:526,0,1122	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51820	.	T	G	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.105;HaplotypeScore=33.5917;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=1;MQRankSum=2.824;QD=8.62;ReadPosRankSum=-1.461;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.454T>G|p.Phe152Val|454/939|454/939|152/312||	GT:AD:DP:GQ:PL	0/1:34,22:56:99:511,0,1028	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51822	.	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=33.5917;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=1;MQRankSum=-5.361;QD=6.84;ReadPosRankSum=-0.426;SOR=0.600;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.456C>T|p.Phe152Phe|456/939|456/939|152/312||	GT:AD:DP:GQ:PL	0/1:39,17:56:99:411,0,1127	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51843	.	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;DP=57;Dels=0.00;ExcessHet=3.0103;FS=6.891;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.09;MQ0=1;MQRankSum=-5.877;QD=6.32;ReadPosRankSum=0.261;SOR=1.893;ANN=G|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.477A>G|p.Ala159Ala|477/939|477/939|159/312||	GT:AD:DP:GQ:PL	0/1:41,15:57:99:382,0,1147	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51859	.	C	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DP=59;Dels=0.00;ExcessHet=3.0103;FS=8.007;HaplotypeScore=77.6504;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=1;MQRankSum=2.691;QD=8.62;ReadPosRankSum=1.691;SOR=0.476;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.493C>A|p.His165Asn|493/939|493/939|165/312||	GT:AD:DP:GQ:PL	0/1:37,22:59:99:537,0,1105	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51863	.	T	C	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.842;HaplotypeScore=128.8247;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=1;MQRankSum=-5.014;QD=5.32;ReadPosRankSum=-0.099;SOR=1.680;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.497T>C|p.Phe166Ser|497/939|497/939|166/312||	GT:AD:DP:GQ:PL	0/1:42,14:56:99:326,0,1201	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51895	.	C	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.588;HaplotypeScore=2.9068;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=1;MQRankSum=-3.834;QD=9.96;ReadPosRankSum=-2.877;SOR=1.660;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/8|c.529C>T|p.Arg177Cys|529/939|529/939|177/312||	GT:AD:DP:GQ:PL	0/1:47,29:76:99:785,0,1271	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51938	.	A	C	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;DP=75;Dels=0.00;ExcessHet=3.0103;FS=10.301;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-1.589;QD=10.09;ReadPosRankSum=0.920;SOR=0.975;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/7|c.566+6A>C||||||	GT:AD:DP:GQ:PL	0/1:47,28:75:99:785,0,1345	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51977	.	A	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.207;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=0.817;QD=10.27;ReadPosRankSum=1.675;SOR=0.820;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/7|c.566+45A>G||||||	GT:AD:DP:GQ:PL	0/1:48,30:78:99:829,0,1378	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	51997	.	T	A	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.880;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-0.684;SOR=0.745;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/7|c.567-36T>A||||||	GT:AD:DP:GQ:PL	0/1:44,32:76:99:907,0,1185	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52018	.	C	A	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=0.611;QD=5.00;ReadPosRankSum=1.291;SOR=0.661;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|6/7|c.567-15C>A||||||	GT:AD:DP:GQ:PL	0/1:59,20:80:99:423,0,1760	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52034	.	G	T	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.002;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-1.078;QD=11.59;ReadPosRankSum=-2.051;SOR=0.815;ANN=T|missense_variant&splice_region_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/8|c.568G>T|p.Gly190Cys|568/939|568/939|190/312||	GT:AD:DP:GQ:PL	0/1:38,31:69:99:828,0,1107	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52082	.	A	G	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.892;HaplotypeScore=17.8275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.20;ReadPosRankSum=1.233;SOR=0.571;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/8|c.616A>G|p.Ile206Val|616/939|616/939|206/312||	GT:AD:DP:GQ:PL	0/1:27,50:77:99:1507,0,635	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52090	.	G	A	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.961;HaplotypeScore=17.8301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.89;ReadPosRankSum=0.692;SOR=0.988;ANN=A|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/8|c.624G>A|p.Ser208Ser|624/939|624/939|208/312||	GT:AD:DP:GQ:PL	0/1:40,32:72:99:956,0,1077	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52096	.	A	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.872;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.522;SOR=0.885;ANN=G|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/8|c.630A>G|p.Ala210Ala|630/939|630/939|210/312||	GT:AD:DP:GQ:PL	0/1:41,34:75:99:934,0,1135	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52124	.	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.09;ReadPosRankSum=1.236;SOR=0.660;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/8|c.658G>A|p.Ala220Thr|658/939|658/939|220/312||	GT:AD:DP:GQ:PL	0/1:58,15:73:99:327,0,1676	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52125	.	C	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.127;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.236;SOR=0.660;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/8|c.659C>T|p.Ala220Val|659/939|659/939|220/312||	GT:AD:DP:GQ:PL	0/1:58,15:73:99:350,0,1594	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52192	.	T	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=31.9466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-1.519;SOR=0.657;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/7|c.690+36T>C||||||	GT:AD:DP:GQ:PL	0/1:47,14:61:99:325,0,1454	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52227	.	T	C	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;DP=67;Dels=0.00;ExcessHet=3.0103;FS=5.024;HaplotypeScore=6.4437;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-2.571;QD=12.40;ReadPosRankSum=-0.973;SOR=1.398;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|7/7|c.691-6T>C||||||	GT:AD:DP:GQ:PL	0/1:34,33:67:99:859,0,1049	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52254	.	A	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.539;HaplotypeScore=16.6528;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=-3.409;QD=11.96;ReadPosRankSum=1.504;SOR=1.207;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.712A>C|p.Lys238Gln|712/939|712/939|238/312||	GT:AD:DP:GQ:PL	0/1:33,29:62:99:770,0,926	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52256	.	A	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.5686;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=1.585;QD=4.63;ReadPosRankSum=-1.320;SOR=0.597;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.714A>T|p.Lys238Asn|714/939|714/939|238/312||	GT:AD:DP:GQ:PL	0/1:50,12:62:99:315,0,1377	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52263	.	T	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.277;HaplotypeScore=15.5690;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-3.522;QD=11.76;ReadPosRankSum=1.140;SOR=1.193;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.721T>C|p.Cys241Arg|721/939|721/939|241/312||	GT:AD:DP:GQ:PL	0/1:31,29:60:99:734,0,902	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52294	.	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.388;HaplotypeScore=2.8309;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-4.351;QD=11.09;ReadPosRankSum=0.754;SOR=1.136;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.752G>A|p.Arg251Gln|752/939|752/939|251/312||	GT:AD:DP:GQ:PL	0/1:26,25:51:99:594,0,734	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52301	.	T	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.047;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-4.356;QD=14.35;ReadPosRankSum=0.169;SOR=0.922;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.759T>C|p.His253His|759/939|759/939|253/312||	GT:AD:DP:GQ:PL	0/1:26,27:53:99:789,0,724	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52325	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.9022;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-3.572;QD=3.61;ReadPosRankSum=-0.936;SOR=0.976;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.783C>T|p.Asp261Asp|783/939|783/939|261/312||	GT:AD:DP:GQ:PL	0/1:46,14:60:99:245,0,1297	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52334	.	C	T	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.979;HaplotypeScore=12.7455;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=0;MQRankSum=-5.132;QD=11.53;ReadPosRankSum=-0.632;SOR=0.626;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.792C>T|p.Ile264Ile|792/939|792/939|264/312||	GT:AD:DP:GQ:PL	0/1:35,27:62:99:743,0,959	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52384	.	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.500;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=-6.672;QD=7.50;ReadPosRankSum=-0.293;SOR=1.025;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.842G>A|p.Gly281Glu|842/939|842/939|281/312||	GT:AD:DP:GQ:PL	0/1:35,17:52:99:418,0,1053	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52402	.	T	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-6.642;QD=8.69;ReadPosRankSum=-1.664;SOR=0.950;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.860T>C|p.Ile287Thr|860/939|860/939|287/312||	GT:AD:DP:GQ:PL	0/1:33,19:52:99:480,0,882	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52429	.	TGA	T	883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;DP=56;ExcessHet=3.0103;FS=3.848;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=-6.925;QD=15.78;ReadPosRankSum=-1.454;SOR=1.063;ANN=T|frameshift_variant|HIGH|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.888_889delGA|p.Lys298fs|888/939|888/939|296/312||;LOF=(EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|1|1.00)	GT:AD:DP:GQ:PL	0/1:36,20:56:99:921,0,1827	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	52446	.	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.500;MQ=56.61;MQ0=0;MQRankSum=-5.468;QD=1.79;ReadPosRankSum=2.623;SOR=0.861;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_50235_50285|GENE_EXON_scaffold842_cov62_50235_50285|transcript|Soaet10008436|protein_coding|8/8|c.904A>G|p.Thr302Ala|904/939|904/939|302/312||	GT:AD:DP:GQ:PL	0/1:49,9:58:99:132,0,1383	scaffold842_cov62	GLEAN	mRNA	50235	52481	0.75	+	.	ID=Soaet10008436
scaffold842_cov62	59627	.	G	T	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.85;ReadPosRankSum=-1.128;SOR=0.836;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*4598C>A|||||4598|,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.426+47G>T||||||	GT:AD:DP:GQ:PL	0/1:7,15:22:99:443,0,236	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	59688	.	CA	C	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.58;ReadPosRankSum=0.097;SOR=0.569;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*4536delT|||||4536|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.426+109delA||||||	GT:AD:DP:GQ:PL	0/1:13,14:27:99:539,0,510	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	59778	.	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.113;SOR=0.732;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*4447C>T|||||4447|,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.426+198G>A||||||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:241,0,447	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	60045	.	A	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.739;SOR=0.584;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.-4943A>T|||||4943|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*4180T>A|||||4180|,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.426+465A>T||||||	GT:AD:DP:GQ:PL	0/1:16,10:26:99:279,0,418	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	60170	.	T	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.904;SOR=1.019;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.-4818T>G|||||4818|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*4055A>C|||||4055|,G|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.426+590T>G||||||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:283,0,453	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	60327	.	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.302;SOR=1.112;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.-4661T>C|||||4661|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*3898A>G|||||3898|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.427-510T>C||||||	GT:AD:DP:GQ:PL	0/1:11,6:17:99:135,0,338	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	60365	.	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=1;MQRankSum=0.923;QD=6.56;ReadPosRankSum=-0.262;SOR=0.877;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.-4623G>A|||||4623|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*3860C>T|||||3860|,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.427-472G>A||||||	GT:AD:DP:GQ:PL	0/1:16,5:21:99:166,0,390	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	60445	.	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.982;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.64;ReadPosRankSum=1.422;SOR=1.668;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.-4543C>T|||||4543|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*3780G>A|||||3780|,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.427-392C>T||||||	GT:AD:DP:GQ:PL	0/1:15,8:23:99:204,0,454	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	60549	.	A	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.507;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.806;SOR=1.112;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.-4439A>T|||||4439|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*3676T>A|||||3676|,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.427-288A>T||||||	GT:AD:DP:GQ:PL	0/1:12,15:27:99:432,0,355	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	60730	.	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-1.320;SOR=0.412;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.-4258G>A|||||4258|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.*3495C>T|||||3495|,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding|4/6|c.427-107G>A||||||	GT:AD:DP:GQ:PL	0/1:10,14:24:99:402,0,271	scaffold842_cov62	GLEAN	mRNA	58687	61323	0.54	+	.	ID=Soaet10008437
scaffold842_cov62	65172	.	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=8;Dels=0.00;ExcessHet=3.0103;FS=7.068;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-1.611;QD=9.35;ReadPosRankSum=-0.439;SOR=2.807;ANN=G|stop_lost|HIGH|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.185A>G|p.Ter62Trpext*?|185/2418|185/2418|62/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-744T>C|||||744|,G|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding||c.*3849A>G|||||3849|	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,179	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	65199	.	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=1;MQRankSum=-1.210;QD=10.34;ReadPosRankSum=-0.508;SOR=1.919;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.212G>A|p.Arg71His|212/2418|212/2418|71/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-771C>T|||||771|,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding||c.*3876G>A|||||3876|	GT:AD:DP:GQ:PL	0/1:6,5:11:99:142,0,184	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	65202	.	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=1;MQRankSum=-1.210;QD=10.52;ReadPosRankSum=-0.100;SOR=1.919;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.215G>A|p.Arg72His|215/2418|215/2418|72/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-774C>T|||||774|,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding||c.*3879G>A|||||3879|	GT:AD:DP:GQ:PL	0/1:6,5:11:99:144,0,184	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	65217	.	A	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=1;MQRankSum=-0.998;QD=9.90;ReadPosRankSum=0.177;SOR=1.206;ANN=C|stop_lost|HIGH|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.230A>C|p.Ter77Serext*?|230/2418|230/2418|77/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-789T>G|||||789|,C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding||c.*3894A>C|||||3894|	GT:AD:DP:GQ:PL	0/1:6,6:12:99:147,0,184	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	65309	.	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=0.084;QD=11.98;ReadPosRankSum=-0.405;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.322T>C|p.Cys108Arg|322/2418|322/2418|108/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-881A>G|||||881|,C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding||c.*3986T>C|||||3986|	GT:AD:DP:GQ:PL	0/1:6,4:10:99:148,0,111	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	65331	.	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=0;MQRankSum=-1.242;QD=9.47;ReadPosRankSum=-1.100;SOR=0.223;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.344G>A|p.Gly115Glu|344/2418|344/2418|115/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-903C>T|||||903|,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_58687_58771|GENE_EXON_scaffold842_cov62_58687_58771|transcript|Soaet10008437|protein_coding||c.*4008G>A|||||4008|	GT:AD:DP:GQ:PL	0/1:4,4:8:99:104,0,111	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66429	.	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.594;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.47;MQ0=1;MQRankSum=-5.364;QD=3.93;ReadPosRankSum=-1.613;SOR=0.668;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1442A>G|p.Asp481Gly|1442/2418|1442/2418|481/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2001T>C|||||2001|,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4190A>G|||||4190|	GT:AD:DP:GQ:PL	0/1:22,10:32:99:154,0,539	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66443	.	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.705;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.99;MQ0=1;MQRankSum=-4.978;QD=3.21;ReadPosRankSum=-0.585;SOR=0.321;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1456C>T|p.Pro486Ser|1456/2418|1456/2418|486/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2015G>A|||||2015|,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4176C>T|||||4176|	GT:AD:DP:GQ:PL	0/1:20,8:28:99:118,0,508	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66490	.	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=1;MQRankSum=-4.736;QD=6.26;ReadPosRankSum=1.984;SOR=0.459;ANN=G|synonymous_variant|LOW|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1503A>G|p.Leu501Leu|1503/2418|1503/2418|501/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2062T>C|||||2062|,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4129A>G|||||4129|	GT:AD:DP:GQ:PL	0/1:16,10:26:99:191,0,487	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66491	.	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=1;MQRankSum=-4.736;QD=6.34;ReadPosRankSum=1.898;SOR=0.459;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1504G>A|p.Val502Ile|1504/2418|1504/2418|502/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2063C>T|||||2063|,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4128G>A|||||4128|	GT:AD:DP:GQ:PL	0/1:16,10:26:99:193,0,497	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66523	.	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.79;MQ0=1;MQRankSum=-4.635;QD=7.45;ReadPosRankSum=0.274;SOR=0.601;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1536T>C|p.Val512Val|1536/2418|1536/2418|512/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2095A>G|||||2095|,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4096T>C|||||4096|	GT:AD:DP:GQ:PL	0/1:14,12:26:99:222,0,410	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66528	.	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.79;MQ0=1;MQRankSum=-4.635;QD=7.61;ReadPosRankSum=0.164;SOR=0.601;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1541C>T|p.Thr514Ile|1541/2418|1541/2418|514/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2100G>A|||||2100|,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4091C>T|||||4091|	GT:AD:DP:GQ:PL	0/1:14,12:26:99:226,0,379	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66551	.	A	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.534;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=50.27;MQ0=1;MQRankSum=-4.009;QD=10.24;ReadPosRankSum=0.207;SOR=1.821;ANN=T|stop_gained|HIGH|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1564A>T|p.Lys522*|1564/2418|1564/2418|522/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2123T>A|||||2123|,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4068A>T|||||4068|	GT:AD:DP:GQ:PL	0/1:11,9:20:99:233,0,264	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66553	.	A	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.269;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=50.77;MQ0=1;MQRankSum=-3.541;QD=8.70;ReadPosRankSum=0.436;SOR=1.561;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1566A>T|p.Lys522Asn|1566/2418|1566/2418|522/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2125T>A|||||2125|,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4066A>T|||||4066|	GT:AD:DP:GQ:PL	0/1:13,8:21:99:211,0,297	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66581	.	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.193;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.02;MQ0=1;MQRankSum=-4.442;QD=6.25;ReadPosRankSum=1.870;SOR=1.567;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1594G>A|p.Asp532Asn|1594/2418|1594/2418|532/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2153C>T|||||2153|,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4038G>A|||||4038|	GT:AD:DP:GQ:PL	0/1:15,8:23:99:172,0,345	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66592	.	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.193;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=53.02;MQ0=1;MQRankSum=-4.442;QD=5.47;ReadPosRankSum=1.481;SOR=1.567;ANN=A|stop_retained_variant|LOW|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1605G>A|p.Ter535Ter|1605/2418|1605/2418|535/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2164C>T|||||2164|,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4027G>A|||||4027|	GT:AD:DP:GQ:PL	0/1:15,8:23:99:154,0,338	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66602	.	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.833;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=52.68;MQ0=1;MQRankSum=-4.321;QD=5.72;ReadPosRankSum=0.784;SOR=1.230;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1615T>C|p.Leu539Leu|1615/2418|1615/2418|539/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2174A>G|||||2174|,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4017T>C|||||4017|	GT:AD:DP:GQ:PL	0/1:14,8:22:99:154,0,329	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66615	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.506;HaplotypeScore=6.4819;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=2;MQRankSum=-4.230;QD=5.44;ReadPosRankSum=-0.454;SOR=1.863;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1628G>A|p.Ser543Asn|1628/2418|1628/2418|543/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2187C>T|||||2187|,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-4004G>A|||||4004|	GT:AD:DP:GQ:PL	0/1:14,8:22:99:148,0,372	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66627	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.842;HaplotypeScore=3.7343;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=1;MQRankSum=-3.879;QD=4.65;ReadPosRankSum=-0.113;SOR=2.494;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1640G>A|p.Gly547Glu|1640/2418|1640/2418|547/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2199C>T|||||2199|,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3992G>A|||||3992|	GT:AD:DP:GQ:PL	0/1:13,5:18:99:112,0,349	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66652	.	C	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.26;MQ0=2;MQRankSum=-3.611;QD=2.99;ReadPosRankSum=-0.723;SOR=2.303;ANN=G|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1665C>G|p.Ile555Met|1665/2418|1665/2418|555/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2224G>C|||||2224|,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3967C>G|||||3967|	GT:AD:DP:GQ:PL	0/1:13,4:17:79:79,0,276	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66656	.	G	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=2;MQRankSum=-3.750;QD=2.49;ReadPosRankSum=-0.740;SOR=2.584;ANN=T|stop_gained|HIGH|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1669G>T|p.Glu557*|1669/2418|1669/2418|557/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2228C>A|||||2228|,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3963G>T|||||3963|	GT:AD:DP:GQ:PL	0/1:14,4:18:73:73,0,352	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	66662	.	T	C	22.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.00;MQ0=2;MQRankSum=-3.589;QD=1.34;ReadPosRankSum=-0.170;SOR=2.066;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.1675T>C|p.Trp559Arg|1675/2418|1675/2418|559/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2234A>G|||||2234|,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3957T>C|||||3957|	GT:AD:DP:GQ:PL	0/1:14,3:17:51:51,0,346	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	67190	.	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=0;MQRankSum=-0.547;QD=2.82;ReadPosRankSum=-0.237;SOR=1.751;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.2203T>C|p.Leu735Leu|2203/2418|2203/2418|735/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2762A>G|||||2762|,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3429T>C|||||3429|	GT:AD:DP:GQ:PL	0/1:15,3:18:79:79,0,463	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	67225	.	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-1.778;QD=9.42;ReadPosRankSum=-0.181;SOR=1.136;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.2238T>C|p.Leu746Leu|2238/2418|2238/2418|746/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2797A>G|||||2797|,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3394T>C|||||3394|	GT:AD:DP:GQ:PL	0/1:13,8:21:99:226,0,403	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	67238	.	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.086;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-1.705;QD=10.39;ReadPosRankSum=0.116;SOR=1.270;ANN=C|stop_lost|HIGH|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.2251T>C|p.Ter751Glnext*?|2251/2418|2251/2418|751/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2810A>G|||||2810|,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3381T>C|||||3381|	GT:AD:DP:GQ:PL	0/1:12,8:20:99:236,0,365	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	67248	.	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=-1.449;QD=11.95;ReadPosRankSum=-1.047;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.2261C>T|p.Ala754Val|2261/2418|2261/2418|754/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2820G>A|||||2820|,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3371C>T|||||3371|	GT:AD:DP:GQ:PL	0/1:12,11:23:99:303,0,388	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	67305	.	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-1.597;QD=10.46;ReadPosRankSum=1.319;SOR=0.616;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.2318T>C|p.Leu773Pro|2318/2418|2318/2418|773/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2877A>G|||||2877|,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3314T>C|||||3314|	GT:AD:DP:GQ:PL	0/1:17,13:30:99:342,0,428	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	67363	.	GC	G	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.145;QD=14.21;ReadPosRankSum=-0.692;SOR=0.551;ANN=G|frameshift_variant|HIGH|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.2377delC|p.His793fs|2377/2418|2377/2418|793/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2936delG|||||2936|,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3255delC|||||3255|	GT:AD:DP:GQ:PL	0/1:19,13:33:99:492,0,764	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	67399	.	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.945;SOR=0.871;ANN=A|synonymous_variant|LOW|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding|1/1|c.2412G>A|p.Gln804Gln|2412/2418|2412/2418|804/805||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64225_64428|GENE_EXON_scaffold842_cov62_64225_64428|transcript|Soaet10008438|protein_coding||c.-2971C>T|||||2971|,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.-3220G>A|||||3220|	GT:AD:DP:GQ:PL	0/1:19,16:35:99:455,0,512	scaffold842_cov62	GLEAN	mRNA	64988	67405	0.97	+	.	ID=Soaet10008439
scaffold842_cov62	70975	.	G	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-1.383;SOR=0.836;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3570G>C|||||3570|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+96G>C||||||	GT:AD:DP:GQ:PL	0/1:22,13:35:99:337,0,666	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	70976	.	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-1.118;SOR=0.693;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3571C>T|||||3571|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+97C>T||||||	GT:AD:DP:GQ:PL	0/1:22,12:34:99:309,0,621	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	70999	.	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-1.908;SOR=0.904;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3594C>T|||||3594|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+120C>T||||||	GT:AD:DP:GQ:PL	0/1:19,12:31:99:260,0,607	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71092	.	C	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.516;SOR=0.527;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3687C>A|||||3687|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+213C>A||||||	GT:AD:DP:GQ:PL	0/1:22,11:33:99:277,0,639	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71152	.	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.178;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.76;ReadPosRankSum=1.056;SOR=0.169;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3747T>C|||||3747|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+273T>C||||||	GT:AD:DP:GQ:PL	0/1:18,8:26:99:230,0,521	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71160	.	A	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.734;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.324;SOR=0.268;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3755A>C|||||3755|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+281A>C||||||	GT:AD:DP:GQ:PL	0/1:17,9:26:99:235,0,512	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71172	.	A	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.243;SOR=0.268;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3767A>T|||||3767|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+293A>T||||||	GT:AD:DP:GQ:PL	0/1:17,9:26:99:270,0,513	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71179	.	C	CA	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.32;RPA=1,2;RU=A;ReadPosRankSum=-0.126;SOR=0.711;STR;ANN=CA|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3774_*3775insA|||||3775|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,CA|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+300_261+301insA||||||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:343,0,640	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71358	.	C	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.267;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.084;SOR=1.015;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*3953C>T|||||3953|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+479C>T||||||	GT:AD:DP:GQ:PL	0/1:25,15:40:99:394,0,581	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71420	.	C	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=41;Dels=0.00;ExcessHet=3.0103;FS=9.593;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.086;SOR=1.061;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*4015C>A|||||4015|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.261+541C>A||||||	GT:AD:DP:GQ:PL	0/1:22,19:41:99:425,0,584	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71606	.	G	GA	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.91;RPA=5,6;RU=A;ReadPosRankSum=-1.120;SOR=0.693;STR;ANN=GA|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*4201_*4202insA|||||4202|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,GA|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.262-402_262-401insA||||||	GT:AD:DP:GQ:PL	0/1:11,15:26:99:451,0,326	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	71706	.	G	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.628;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.382;SOR=0.799;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*4301G>T|||||4301|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|1/9|c.262-302G>T||||||	GT:AD:DP:GQ:PL	0/1:13,12:25:99:285,0,373	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	72218	.	T	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.739;SOR=0.745;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*4813T>C|||||4813|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|2/9|c.431-30T>C||||||	GT:AD:DP:GQ:PL	0/1:21,15:36:99:352,0,601	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	72371	.	T	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.598;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=0.934;QD=11.14;ReadPosRankSum=0.026;SOR=0.616;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_64988_67405|GENE_EXON_scaffold842_cov62_64988_67405|transcript|Soaet10008439|protein_coding||c.*4966T>A|||||4966|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.495+59T>A||||||	GT:AD:DP:GQ:PL	0/1:15,11:26:99:318,0,407	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	72553	.	CA	C	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.84;RPA=4,3;RU=A;ReadPosRankSum=0.643;SOR=0.693;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.495+242delA||||||	GT:AD:DP:GQ:PL	0/1:10,10:20:99:334,0,332	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	72897	.	T	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.339;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.495+585T>A||||||	GT:AD:DP:GQ:PL	0/1:12,11:23:99:261,0,287	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	72990	.	C	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.916;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.875;SOR=0.523;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.495+678C>T||||||	GT:AD:DP:GQ:PL	0/1:9,11:20:99:319,0,253	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	73094	.	GA	G	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DP=18;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.26;RPA=6,5;RU=A;ReadPosRankSum=0.182;SOR=1.555;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.495+783delA||||||	GT:AD:DP:GQ:PL	0/1:11,7:18:99:204,0,338	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	73301	.	C	G	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.528;SOR=0.972;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.495+989C>G||||||	GT:AD:DP:GQ:PL	0/1:21,14:35:99:355,0,537	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	73347	.	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.92;ReadPosRankSum=2.288;SOR=0.624;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.495+1035C>T||||||	GT:AD:DP:GQ:PL	0/1:22,19:41:99:517,0,525	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	73766	.	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.61;ReadPosRankSum=1.097;SOR=0.666;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-1079T>C||||||	GT:AD:DP:GQ:PL	0/1:16,13:29:99:365,0,362	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	73779	.	T	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-0.198;SOR=0.666;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-1066T>A||||||	GT:AD:DP:GQ:PL	0/1:16,13:29:99:351,0,420	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	73805	.	T	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-2.031;SOR=0.400;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-1040T>A||||||	GT:AD:DP:GQ:PL	0/1:15,14:29:99:335,0,414	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	74042	.	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-0.510;SOR=0.818;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-803C>T||||||	GT:AD:DP:GQ:PL	0/1:13,14:27:99:370,0,327	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	74043	.	C	T	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-0.388;SOR=0.818;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-802C>T||||||	GT:AD:DP:GQ:PL	0/1:13,14:27:99:423,0,323	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	74275	.	G	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.644;SOR=0.648;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-570G>T||||||	GT:AD:DP:GQ:PL	0/1:16,8:24:99:204,0,461	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	74483	.	G	GCT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=12;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.98;RPA=1,2;RU=CT;ReadPosRankSum=0.000;SOR=1.930;STR;ANN=GCT|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-362_496-361insCT||||||	GT:AD:DP:GQ:PL	0/1:7,5:12:99:217,0,319	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	74663	.	T	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-2.451;SOR=0.551;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|3/9|c.496-182T>C||||||	GT:AD:DP:GQ:PL	0/1:12,13:25:99:362,0,322	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	74856	.	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5791;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=1.226;QD=14.39;ReadPosRankSum=1.294;SOR=0.955;ANN=G|synonymous_variant|LOW|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|4/10|c.507A>G|p.Glu169Glu|507/1407|507/1407|169/468||,G|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4865T>C|||||4865|	GT:AD:DP:GQ:PL	0/1:14,19:34:99:503,0,422	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75054	.	T	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.78;ReadPosRankSum=-0.446;SOR=0.776;ANN=A|synonymous_variant|LOW|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|4/10|c.705T>A|p.Ser235Ser|705/1407|705/1407|235/468||,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4667A>T|||||4667|	GT:AD:DP:GQ:PL	0/1:7,17:24:99:527,0,154	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75093	.	G	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.098;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.74;ReadPosRankSum=2.518;SOR=1.765;ANN=C|missense_variant|MODERATE|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|4/10|c.744G>C|p.Gln248His|744/1407|744/1407|248/468||,C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4628C>G|||||4628|	GT:AD:DP:GQ:PL	0/1:6,14:20:99:403,0,196	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75214	.	AT	A	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DP=28;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.99;RPA=12,11;RU=T;ReadPosRankSum=1.664;SOR=0.238;STR;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4506delA|||||4506|,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|4/9|c.806-24delT||||||	GT:AD:DP:GQ:PL	0/1:6,21:28:53:469,0,53	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75232	.	A	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DP=34;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.3483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.09;ReadPosRankSum=1.062;SOR=0.542;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|4/9|c.806-7A>T||||||,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4489T>A|||||4489|	GT:AD:DP:GQ:PL	0/1:8,23:33:99:527,0,167	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75235	.	G	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.6128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.27;ReadPosRankSum=2.161;SOR=0.551;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|4/9|c.806-4G>C||||||,C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4486C>G|||||4486|	GT:AD:DP:GQ:PL	0/1:9,23:32:99:549,0,219	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75397	.	A	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.397;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.423;SOR=1.051;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4324T>G|||||4324|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|5/9|c.953+11A>C||||||	GT:AD:DP:GQ:PL	0/1:19,13:33:99:382,0,505	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75516	.	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=14;Dels=0.00;ExcessHet=3.0103;FS=11.553;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.354;SOR=3.229;ANN=A|missense_variant|MODERATE|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|6/10|c.1000G>A|p.Asp334Asn|1000/1407|1000/1407|334/468||,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*4205C>T|||||4205|	GT:AD:DP:GQ:PL	0/1:10,4:14:83:83,0,307	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75926	.	T	C	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.29;ReadPosRankSum=1.034;SOR=0.503;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*3795A>G|||||3795|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|8/9|c.1176+41T>C||||||	GT:AD:DP:GQ:PL	0/1:17,17:34:99:548,0,430	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	75927	.	C	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.29;ReadPosRankSum=1.086;SOR=0.503;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*3794G>A|||||3794|,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|8/9|c.1176+42C>T||||||	GT:AD:DP:GQ:PL	0/1:17,17:34:99:514,0,424	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	76134	.	G	GTTCTT	1256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.95;RPA=2,3;RU=TTCTT;ReadPosRankSum=-0.143;SOR=0.683;STR;ANN=GTTCTT|splice_region_variant&intron_variant|LOW|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1320+5_1320+6insTTCTT||||||,GTTCTT|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*3586_*3587insAAGAA|||||3586|	GT:AD:DP:GQ:PL	0/1:17,19:39:99:1294,0,1149	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	76285	.	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.23;ReadPosRankSum=0.146;SOR=1.371;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*3436T>C|||||3436|,G|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1320+156A>G||||||	GT:AD:DP:GQ:PL	0/1:8,17:25:99:534,0,194	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	76304	.	T	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.32;ReadPosRankSum=1.123;SOR=0.538;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*3417A>G|||||3417|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1320+175T>C||||||	GT:AD:DP:GQ:PL	0/1:12,15:27:99:415,0,282	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	76339	.	T	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-1.303;SOR=0.355;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*3382A>G|||||3382|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1320+210T>C||||||	GT:AD:DP:GQ:PL	0/1:9,13:22:99:338,0,216	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	76515	.	T	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;DP=23;Dels=0.00;ExcessHet=3.0103;FS=6.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-0.221;SOR=0.132;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*3206A>T|||||3206|,A|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1320+386T>A||||||	GT:AD:DP:GQ:PL	0/1:9,14:23:99:375,0,243	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	76798	.	T	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-1.666;SOR=0.250;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*2923A>G|||||2923|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1320+669T>C||||||	GT:AD:DP:GQ:PL	0/1:11,20:31:99:566,0,332	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	77112	.	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.761;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.031;SOR=0.343;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*2609G>A|||||2609|,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1321-627C>T||||||	GT:AD:DP:GQ:PL	0/1:12,11:23:99:299,0,331	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	77274	.	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;DP=12;Dels=0.00;ExcessHet=3.0103;FS=7.404;HaplotypeScore=1.9158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.25;ReadPosRankSum=-1.200;SOR=0.838;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*2447A>G|||||2447|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1321-465T>C||||||	GT:AD:DP:GQ:PL	0/1:3,8:12:99:229,0,100	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	77319	.	T	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=11;Dels=0.00;ExcessHet=3.0103;FS=12.175;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.25;ReadPosRankSum=-0.381;SOR=1.706;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*2402A>C|||||2402|,G|intron_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|9/9|c.1321-420T>G||||||	GT:AD:DP:GQ:PL	0/1:3,8:11:99:229,0,100	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	77777	.	C	T	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.86;ReadPosRankSum=0.335;SOR=0.842;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding|10/10|c.1359C>T|p.Tyr453Tyr|1359/1407|1359/1407|453/468||,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.*1944G>A|||||1944|	GT:AD:DP:GQ:PL	0/1:19,18:37:99:504,0,468	scaffold842_cov62	GLEAN	mRNA	70619	77825	1.00	+	.	ID=Soaet10008440
scaffold842_cov62	79733	.	GAA	G	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;DP=19;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.65;RPA=5,3;RU=A;ReadPosRankSum=-0.086;SOR=1.324;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding|6/6|c.1219_1220delTT|p.Phe407fs|1220/1233|1219/1233|407/410||,G|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding||c.-4628_-4627delAA|||||4628|,G|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.*1909_*1910delAA|||||1909|	GT:AD:DP:GQ:PL	0/1:9,9:19:99:391,0,381	scaffold842_cov62	GLEAN	mRNA	79721	81617	0.59	-	.	ID=Soaet10008441
scaffold842_cov62	80472	.	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-0.245;SOR=1.981;ANN=A|synonymous_variant|LOW|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding|3/6|c.759C>T|p.Asp253Asp|759/1233|759/1233|253/410||,A|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding||c.-3890G>A|||||3890|,A|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.*2647G>A|||||2647|	GT:AD:DP:GQ:PL	0/1:10,5:15:99:144,0,192	scaffold842_cov62	GLEAN	mRNA	79721	81617	0.59	-	.	ID=Soaet10008441
scaffold842_cov62	81058	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.39;MQ0=14;MQRankSum=2.341;QD=5.25;ReadPosRankSum=1.124;SOR=0.782;ANN=T|synonymous_variant|LOW|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding|2/6|c.243G>A|p.Pro81Pro|243/1233|243/1233|81/410||,T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding||c.-3304C>T|||||3304|,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.*3233C>T|||||3233|	GT:AD:DP:GQ:PL	0/1:41,11:52:99:301,0,644	scaffold842_cov62	GLEAN	mRNA	79721	81617	0.59	-	.	ID=Soaet10008441
scaffold842_cov62	81363	.	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.440;SOR=1.061;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding||c.-2999T>C|||||2999|,C|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_70619_70879|GENE_EXON_scaffold842_cov62_70619_70879|transcript|Soaet10008440|protein_coding||c.*3538T>C|||||3538|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding|1/5|c.97+158A>G||||||	GT:AD:DP:GQ:PL	0/1:7,3:10:99:106,0,155	scaffold842_cov62	GLEAN	mRNA	79721	81617	0.59	-	.	ID=Soaet10008441
scaffold842_cov62	85733	.	A	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.692;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.550;SOR=1.292;ANN=C|synonymous_variant|LOW|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding|4/9|c.393A>C|p.Thr131Thr|393/828|393/828|131/275||,C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.-4116T>G|||||4116|	GT:AD:DP:GQ:PL	0/1:24,19:43:99:545,0,607	scaffold842_cov62	GLEAN	mRNA	84362	88798	0.77	+	.	ID=Soaet10008442
scaffold842_cov62	86069	.	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8311;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=0.431;QD=4.86;ReadPosRankSum=1.275;SOR=0.959;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.-4452A>G|||||4452|,C|intron_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding|5/8|c.493-21T>C||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:72:72,0,95	scaffold842_cov62	GLEAN	mRNA	84362	88798	0.77	+	.	ID=Soaet10008442
scaffold842_cov62	86456	.	A	AT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;DP=21;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=1.206;QD=11.94;RPA=4,5;RU=T;ReadPosRankSum=-0.988;SOR=1.334;STR;ANN=AT|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.-4840_-4839insA|||||4840|,AT|intron_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding|6/8|c.633+226_633+227insT||||||	GT:AD:DP:GQ:PL	0/1:11,9:21:99:276,0,363	scaffold842_cov62	GLEAN	mRNA	84362	88798	0.77	+	.	ID=Soaet10008442
scaffold842_cov62	86468	.	A	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=1.144;QD=12.23;ReadPosRankSum=-0.810;SOR=0.991;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_79721_79930|GENE_EXON_scaffold842_cov62_79721_79930|transcript|Soaet10008441|protein_coding||c.-4851T>A|||||4851|,T|intron_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding|6/8|c.633+238A>T||||||	GT:AD:DP:GQ:PL	0/1:11,10:21:99:285,0,255	scaffold842_cov62	GLEAN	mRNA	84362	88798	0.77	+	.	ID=Soaet10008442
scaffold842_cov62	87667	.	T	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.08;ReadPosRankSum=1.689;SOR=1.003;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding|7/8|c.688-757T>C||||||	GT:AD:DP:GQ:PL	0/1:16,20:36:99:427,0,455	scaffold842_cov62	GLEAN	mRNA	84362	88798	0.77	+	.	ID=Soaet10008442
scaffold842_cov62	88700	.	C	CAA	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DP=34;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.32;MQ0=0;MQRankSum=1.002;QD=21.12;RPA=3,5;RU=A;ReadPosRankSum=-1.499;SOR=0.446;STR;ANN=CAA|intron_variant|MODIFIER|EXON_scaffold842_cov62_84362_84447|GENE_EXON_scaffold842_cov62_84362_84447|transcript|Soaet10008442|protein_coding|8/8|c.781-51_781-50insAA||||||	GT:AD:DP:GQ:PL	0/1:14,16:34:99:671,0,597	scaffold842_cov62	GLEAN	mRNA	84362	88798	0.77	+	.	ID=Soaet10008442
scaffold842_cov62	131490	.	A	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.778;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.489;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|2/6|c.164-273A>G||||||	GT:AD:DP:GQ:PL	0/1:10,8:18:99:201,0,289	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	132230	.	T	C	822.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.28;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.279+255T>C||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:63:851,63,0	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	132872	.	C	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.426;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.514;SOR=0.439;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.279+897C>T||||||	GT:AD:DP:GQ:PL	0/1:6,9:15:99:254,0,160	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	132887	.	A	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.86;ReadPosRankSum=0.620;SOR=0.525;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.279+912A>T||||||	GT:AD:DP:GQ:PL	0/1:7,9:16:99:250,0,133	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	133326	.	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.909;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.54;ReadPosRankSum=1.436;SOR=1.163;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.279+1351T>C||||||	GT:AD:DP:GQ:PL	0/1:16,24:40:99:730,0,427	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	133734	.	T	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.62;MQ0=0;MQRankSum=0.330;QD=9.10;ReadPosRankSum=0.564;SOR=0.569;ANN=G|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.279+1759T>G||||||	GT:AD:DP:GQ:PL	0/1:9,8:17:99:183,0,210	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	141417	.	T	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.89;ReadPosRankSum=1.198;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.280-3275T>C||||||	GT:AD:DP:GQ:PL	0/1:8,12:20:99:366,0,202	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	141618	.	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-0.760;SOR=0.711;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.280-3074G>A||||||	GT:AD:DP:GQ:PL	0/1:19,19:38:99:543,0,478	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	142502	.	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.24;ReadPosRankSum=1.784;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.280-2190T>C||||||	GT:AD:DP:GQ:PL	0/1:20,4:24:82:82,0,458	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	142717	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.069;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.280-1975G>A||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:186,0,181	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	143175	.	G	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-2.045;SOR=0.646;ANN=T|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.280-1517G>T||||||	GT:AD:DP:GQ:PL	0/1:10,12:23:99:292,0,258	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	143473	.	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.91;ReadPosRankSum=1.451;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold842_cov62_130706_130770|GENE_EXON_scaffold842_cov62_130706_130770|transcript|Soaet10008443|protein_coding|4/6|c.280-1219G>A||||||	GT:AD:DP:GQ:PL	0/1:8,5:13:99:144,0,186	scaffold842_cov62	GLEAN	mRNA	130706	145558	0.95	+	.	ID=Soaet10008443
scaffold842_cov62	199159	.	C	T	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.245;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-1.831;SOR=0.654;ANN=T|missense_variant|MODERATE|EXON_scaffold842_cov62_198842_199237|GENE_EXON_scaffold842_cov62_198842_199237|transcript|Soaet10008445|protein_coding|1/1|c.79G>A|p.Gly27Ser|79/396|79/396|27/131||,T|downstream_gene_variant|MODIFIER|EXON_scaffold842_cov62_197799_198458|GENE_EXON_scaffold842_cov62_197799_198458|transcript|Soaet10008444|protein_coding||c.*701C>T|||||701|	GT:AD:DP:GQ:PL	0/1:14,16:30:99:474,0,377	scaffold842_cov62	GLEAN	mRNA	198842	199237	0.86	-	.	ID=Soaet10008445
scaffold1149_cov63	43392	.	A	G	879.1	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.074;DP=203;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=13.73;MQ0=156;MQRankSum=-0.536;QD=4.33;ReadPosRankSum=1.176;SOR=4.849;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/2|c.19A>G|p.Arg7Gly|19/177|19/177|7/58||,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4224T>C|||||4224|	GT:AD:DP:GQ:PL	1/1:18,185:203:11:907,11,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43447	.	T	C	501.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=14.07;MQ0=91;MQRankSum=-0.740;QD=4.01;ReadPosRankSum=0.547;SOR=4.174;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/2|c.74T>C|p.Leu25Ser|74/177|74/177|25/58||,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4169A>G|||||4169|	GT:AD:DP:GQ:PL	0/1:13,112:125:25:530,0,25	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43497	.	T	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.0269;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=35;MQRankSum=-1.893;QD=6.98;ReadPosRankSum=-2.774;SOR=0.527;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4119A>T|||||4119|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+25T>A||||||	GT:AD:DP:GQ:PL	0/1:11,63:77:59:545,0,59	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43508	.	A	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=69;Dels=0.00;ExcessHet=3.0103;FS=8.966;HaplotypeScore=6.3654;MLEAC=1;MLEAF=0.500;MQ=26.24;MQ0=24;MQRankSum=-3.084;QD=7.50;ReadPosRankSum=-1.432;SOR=1.867;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4108T>A|||||4108|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+36A>T||||||	GT:AD:DP:GQ:PL	0/1:13,55:69:99:538,0,142	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43514	.	A	G	959.77	.	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4495;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=14;QD=14.77;SOR=1.848;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4102T>C|||||4102|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+42A>G||||||	GT:AD:DP:GQ:PL	1/1:0,65:65:81:988,81,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43529	.	A	C	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DP=58;Dels=0.00;ExcessHet=3.0103;FS=18.362;HaplotypeScore=5.2843;MLEAC=1;MLEAF=0.500;MQ=33.94;MQ0=5;MQRankSum=-3.787;QD=12.20;ReadPosRankSum=0.735;SOR=3.344;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4087T>G|||||4087|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+57A>C||||||	GT:AD:DP:GQ:PL	0/1:14,44:58:99:736,0,241	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43535	.	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DP=71;Dels=0.00;ExcessHet=3.0103;FS=39.299;HaplotypeScore=6.2002;MLEAC=1;MLEAF=0.500;MQ=34.65;MQ0=7;MQRankSum=-4.348;QD=13.05;ReadPosRankSum=0.668;SOR=3.771;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4081T>C|||||4081|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+63A>G||||||	GT:AD:DP:GQ:PL	0/1:16,55:71:99:955,0,283	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43552	.	A	T	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;DP=75;Dels=0.00;ExcessHet=3.0103;FS=36.588;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=35.00;MQ0=6;MQRankSum=-4.604;QD=13.17;ReadPosRankSum=0.499;SOR=3.977;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4064T>A|||||4064|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+80A>T||||||	GT:AD:DP:GQ:PL	0/1:14,61:75:99:1016,0,326	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43577	.	A	G	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;DP=75;Dels=0.00;ExcessHet=3.0103;FS=36.588;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=35.38;MQ0=6;MQRankSum=-4.793;QD=13.16;ReadPosRankSum=0.599;SOR=3.977;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*4039T>C|||||4039|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+105A>G||||||	GT:AD:DP:GQ:PL	0/1:14,61:75:99:1015,0,370	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43629	.	T	C	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;DP=74;Dels=0.00;ExcessHet=3.0103;FS=39.650;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.48;MQ0=4;MQRankSum=-6.574;QD=12.46;ReadPosRankSum=0.273;SOR=3.729;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3987A>G|||||3987|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+157T>C||||||	GT:AD:DP:GQ:PL	0/1:20,54:74:99:950,0,528	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43637	.	A	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;DP=65;Dels=0.00;ExcessHet=3.0103;FS=38.528;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=41.35;MQ0=4;MQRankSum=-6.333;QD=12.64;ReadPosRankSum=-0.475;SOR=4.112;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3979T>G|||||3979|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+165A>C||||||	GT:AD:DP:GQ:PL	0/1:19,46:65:99:850,0,551	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43646	.	T	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;DP=59;Dels=0.00;ExcessHet=3.0103;FS=35.054;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=42.22;MQ0=4;MQRankSum=-6.194;QD=11.74;ReadPosRankSum=-1.213;SOR=4.284;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3970A>G|||||3970|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+174T>C||||||	GT:AD:DP:GQ:PL	0/1:19,40:59:99:721,0,561	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43686	.	A	G	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.58;MQ0=1;MQRankSum=-4.704;QD=0.56;ReadPosRankSum=-2.134;SOR=3.606;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3930T>C|||||3930|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+214A>G||||||	GT:AD:DP:GQ:PL	0/1:19,6:25:42:42,0,648	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43767	.	T	A	694.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.251;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=5.004;QD=28.95;ReadPosRankSum=1.374;SOR=0.257;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3849A>T|||||3849|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+295T>A||||||	GT:AD:DP:GQ:PL	1/1:1,23:24:51:723,51,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43867	.	A	G	727.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=29.11;SOR=0.941;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3749T>C|||||3749|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+395A>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:54:756,54,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	43937	.	T	C	645.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.99;SOR=0.793;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3679A>G|||||3679|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+465T>C||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:48:674,48,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44103	.	C	T	763.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.55;SOR=0.770;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3513G>A|||||3513|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+631C>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:792,60,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44204	.	T	C	843.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.13;SOR=1.143;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3412A>G|||||3412|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+732T>C||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:63:872,63,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44302	.	T	C	1062.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.291;HaplotypeScore=2.9994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.21;ReadPosRankSum=1.517;SOR=0.525;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3314A>G|||||3314|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+830T>C||||||	GT:AD:DP:GQ:PL	1/1:1,31:32:44:1091,44,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44305	.	C	A	933.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.13;ReadPosRankSum=1.734;SOR=0.545;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3311G>T|||||3311|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+833C>A||||||	GT:AD:DP:GQ:PL	1/1:1,29:30:35:962,35,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44309	.	G	C	1013.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.349;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.70;ReadPosRankSum=1.399;SOR=0.643;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3307C>G|||||3307|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+837G>C||||||	GT:AD:DP:GQ:PL	1/1:1,30:31:39:1042,39,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44418	.	T	C	901.1	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.75;ReadPosRankSum=-0.726;SOR=1.044;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3198A>G|||||3198|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+946T>C||||||	GT:AD:DP:GQ:PL	0/1:4,31:35:11:929,0,11	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44448	.	A	T	722.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.92;ReadPosRankSum=-0.570;SOR=1.358;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3168T>A|||||3168|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+976A>T||||||	GT:AD:DP:GQ:PL	0/1:4,25:29:23:751,0,23	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44527	.	G	C	592.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.407;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.68;ReadPosRankSum=0.868;SOR=0.446;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4970G>C|||||4970|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*3089C>G|||||3089|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+1055G>C||||||	GT:AD:DP:GQ:PL	1/1:1,23:24:9:620,9,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44637	.	A	G	811.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.47;SOR=0.770;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4860A>G|||||4860|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2979T>C|||||2979|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+1165A>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:840,60,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44660	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.729;SOR=0.425;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4837G>A|||||4837|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2956C>T|||||2956|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+1188G>A||||||	GT:AD:DP:GQ:PL	0/1:17,8:25:99:148,0,514	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44765	.	A	G	508.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4732A>G|||||4732|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2851T>C|||||2851|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+1293A>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:537,39,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44775	.	C	A	508.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.92;SOR=0.818;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4722C>A|||||4722|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2841G>T|||||2841|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.99+1303C>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:39:537,39,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44831	.	C	T	727.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=26.95;SOR=0.765;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4666C>T|||||4666|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2785G>A|||||2785|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1251C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:54:756,54,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44880	.	C	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;DP=47;Dels=0.00;ExcessHet=3.0103;FS=11.979;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=51.28;MQ0=0;MQRankSum=-6.484;QD=1.21;ReadPosRankSum=-4.298;SOR=5.307;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4617C>A|||||4617|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2736G>T|||||2736|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1202C>A||||||	GT:AD:DP:GQ:PL	0/1:33,14:47:85:85,0,953	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44888	.	T	C	1243.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=23.47;SOR=1.791;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4609T>C|||||4609|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2728A>G|||||2728|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1194T>C||||||	GT:AD:DP:GQ:PL	1/1:0,53:54:96:1272,96,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44890	.	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DP=54;Dels=0.00;ExcessHet=3.0103;FS=11.569;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=49.89;MQ0=0;MQRankSum=-6.966;QD=0.94;ReadPosRankSum=-3.768;SOR=5.470;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4607A>G|||||4607|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2726T>C|||||2726|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1192A>G||||||	GT:AD:DP:GQ:PL	0/1:36,18:54:79:79,0,1032	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44917	.	T	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;DP=58;Dels=0.00;ExcessHet=3.0103;FS=11.926;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.20;MQ0=0;MQRankSum=-7.186;QD=0.98;ReadPosRankSum=-0.008;SOR=6.404;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4580T>A|||||4580|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2699A>T|||||2699|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1165T>A||||||	GT:AD:DP:GQ:PL	0/1:33,25:58:85:85,0,936	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44924	.	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;DP=59;Dels=0.00;ExcessHet=3.0103;FS=11.926;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=-7.265;QD=0.96;ReadPosRankSum=1.698;SOR=6.296;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4573T>C|||||4573|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2692A>G|||||2692|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1158T>C||||||	GT:AD:DP:GQ:PL	0/1:34,25:59:85:85,0,958	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44928	.	T	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=59;Dels=0.00;ExcessHet=3.0103;FS=11.907;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=-7.265;QD=0.81;ReadPosRankSum=2.413;SOR=6.296;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4569T>A|||||4569|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2688A>T|||||2688|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1154T>A||||||	GT:AD:DP:GQ:PL	0/1:34,25:59:76:76,0,994	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44942	.	A	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DP=57;Dels=0.00;ExcessHet=3.0103;FS=15.107;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=45.37;MQ0=0;MQRankSum=-7.065;QD=1.59;ReadPosRankSum=4.091;SOR=6.472;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4555A>C|||||4555|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2674T>G|||||2674|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1140A>C||||||	GT:AD:DP:GQ:PL	0/1:31,26:57:99:119,0,897	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	44992	.	G	C	3693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DP=186;Dels=0.00;ExcessHet=3.0103;FS=15.948;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=45.42;MQ0=1;MQRankSum=-6.712;QD=19.86;ReadPosRankSum=-1.824;SOR=2.218;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4505G>C|||||4505|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2624C>G|||||2624|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1090G>C||||||	GT:AD:DP:GQ:PL	0/1:31,155:186:99:3722,0,587	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45017	.	A	C	4869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=236;Dels=0.00;ExcessHet=3.0103;FS=5.181;HaplotypeScore=9.1072;MLEAC=1;MLEAF=0.500;MQ=48.23;MQ0=1;MQRankSum=-5.415;QD=20.63;ReadPosRankSum=-1.472;SOR=1.421;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4480A>C|||||4480|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2599T>G|||||2599|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1065A>C||||||	GT:AD:DP:GQ:PL	0/1:30,206:236:99:4898,0,496	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45050	.	G	A	5365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=250;Dels=0.00;ExcessHet=3.0103;FS=5.328;HaplotypeScore=10.9905;MLEAC=1;MLEAF=0.500;MQ=51.08;MQ0=0;MQRankSum=-5.024;QD=21.46;ReadPosRankSum=1.235;SOR=0.523;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4447G>A|||||4447|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2566C>T|||||2566|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1032G>A||||||	GT:AD:DP:GQ:PL	0/1:25,225:250:99:5394,0,360	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45074	.	A	G	5374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;DP=247;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2671;MLEAC=1;MLEAF=0.500;MQ=49.92;MQ0=0;MQRankSum=-4.703;QD=21.85;ReadPosRankSum=1.190;SOR=0.612;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4423A>G|||||4423|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2542T>C|||||2542|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1008A>G||||||	GT:AD:DP:GQ:PL	0/1:20,226:247:99:5403,0,321	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45075	.	A	G	5396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;DP=247;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2671;MLEAC=1;MLEAF=0.500;MQ=49.92;MQ0=0;MQRankSum=-4.813;QD=21.85;ReadPosRankSum=0.957;SOR=0.714;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4422A>G|||||4422|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2541T>C|||||2541|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-1007A>G||||||	GT:AD:DP:GQ:PL	0/1:21,226:247:99:5425,0,370	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45125	.	A	G	4838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=227;Dels=0.00;ExcessHet=3.0103;FS=12.290;HaplotypeScore=10.7795;MLEAC=1;MLEAF=0.500;MQ=48.52;MQ0=0;MQRankSum=-5.401;QD=21.41;ReadPosRankSum=0.865;SOR=1.788;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4372A>G|||||4372|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2491T>C|||||2491|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-957A>G||||||	GT:AD:DP:GQ:PL	0/1:24,202:227:99:4867,0,370	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45136	.	A	G	4743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;DP=217;Dels=0.00;ExcessHet=3.0103;FS=15.074;HaplotypeScore=10.8553;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-5.646;QD=21.96;ReadPosRankSum=1.077;SOR=1.937;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4361A>G|||||4361|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2480T>C|||||2480|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-946A>G||||||	GT:AD:DP:GQ:PL	0/1:25,191:217:99:4772,0,379	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45162	.	AT	A	3012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DP=156;ExcessHet=3.0103;FS=23.663;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=0;MQRankSum=-6.739;QD=25.97;RPA=3,2;RU=T;ReadPosRankSum=0.111;SOR=3.103;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4334delT|||||4334|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2453delA|||||2453|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-919delT||||||	GT:AD:DP:GQ:PL	0/1:23,93:145:99:3050,0,583	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45166	.	G	C	2850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;DP=132;Dels=0.00;ExcessHet=3.0103;FS=27.219;HaplotypeScore=106.8620;MLEAC=1;MLEAF=0.500;MQ=44.78;MQ0=0;MQRankSum=-7.336;QD=21.60;ReadPosRankSum=1.537;SOR=3.098;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4331G>C|||||4331|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2450C>G|||||2450|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-916G>C||||||	GT:AD:DP:GQ:PL	0/1:30,102:132:99:2879,0,588	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45192	.	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=31.43;SOR=3.535;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4305T>C|||||4305|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2424A>G|||||2424|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-890T>C||||||	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2731,217,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45206	.	T	C	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DP=70;Dels=0.00;ExcessHet=3.0103;FS=60.408;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=42.38;MQ0=0;MQRankSum=-6.798;QD=16.29;ReadPosRankSum=-3.235;SOR=7.743;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4291T>C|||||4291|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2410A>G|||||2410|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-876T>C||||||	GT:AD:DP:GQ:PL	0/1:22,47:70:99:1152,0,560	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45207	.	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.065;DP=68;Dels=0.00;ExcessHet=3.0103;FS=60.389;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=0;MQRankSum=6.882;QD=8.50;ReadPosRankSum=3.465;SOR=0.160;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4290G>A|||||4290|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2409C>T|||||2409|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-875G>A||||||	GT:AD:DP:GQ:PL	0/1:45,23:68:99:606,0,1088	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45326	.	A	G	903.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.28;SOR=0.836;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4171A>G|||||4171|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2290T>C|||||2290|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-756A>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:66:932,66,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45341	.	A	G	818.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.995;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.32;ReadPosRankSum=1.734;SOR=0.223;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4156A>G|||||4156|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2275T>C|||||2275|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-741A>G||||||	GT:AD:DP:GQ:PL	1/1:1,26:27:60:847,60,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45459	.	C	G	1185.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.40;SOR=0.743;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-4038C>G|||||4038|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2157G>C|||||2157|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-623C>G||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1214,87,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45561	.	T	C	960.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SOR=0.693;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3936T>C|||||3936|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*2055A>G|||||2055|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-521T>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:72:989,72,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45685	.	C	T	1261.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.54;SOR=0.793;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3812C>T|||||3812|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1931G>A|||||1931|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-397C>T||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1290,93,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45735	.	T	C	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DP=56;Dels=0.00;ExcessHet=3.0103;FS=46.482;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.25;MQ0=0;MQRankSum=-7.180;QD=10.09;ReadPosRankSum=-6.151;SOR=6.091;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3762T>C|||||3762|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1881A>G|||||1881|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-347T>C||||||	GT:AD:DP:GQ:PL	0/1:36,20:56:99:593,0,1036	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45762	.	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DP=39;Dels=0.00;ExcessHet=3.0103;FS=13.031;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=0;MQRankSum=-5.503;QD=1.87;ReadPosRankSum=-2.089;SOR=3.910;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3735T>C|||||3735|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1854A>G|||||1854|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-320T>C||||||	GT:AD:DP:GQ:PL	0/1:33,6:39:99:101,0,1005	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45775	.	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DP=39;Dels=0.00;ExcessHet=3.0103;FS=12.781;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.64;MQ0=0;MQRankSum=-6.093;QD=2.02;ReadPosRankSum=-0.506;SOR=4.405;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3722T>C|||||3722|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1841A>G|||||1841|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-307T>C||||||	GT:AD:DP:GQ:PL	0/1:31,8:39:99:107,0,992	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45789	.	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;DP=41;Dels=0.00;ExcessHet=3.0103;FS=16.173;HaplotypeScore=3.1619;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=-6.258;QD=2.31;ReadPosRankSum=0.808;SOR=4.403;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3708A>G|||||3708|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1827T>C|||||1827|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-293A>G||||||	GT:AD:DP:GQ:PL	0/1:33,8:41:99:123,0,1067	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45801	.	C	G	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DP=46;Dels=0.00;ExcessHet=3.0103;FS=29.066;HaplotypeScore=4.4921;MLEAC=1;MLEAF=0.500;MQ=51.03;MQ0=1;MQRankSum=-6.114;QD=6.54;ReadPosRankSum=-1.831;SOR=4.169;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3696C>G|||||3696|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1815G>C|||||1815|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-281C>G||||||	GT:AD:DP:GQ:PL	0/1:29,17:46:99:329,0,925	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45873	.	T	C	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DP=118;Dels=0.00;ExcessHet=3.0103;FS=23.985;HaplotypeScore=4.4956;MLEAC=1;MLEAF=0.500;MQ=39.30;MQ0=10;MQRankSum=-8.131;QD=11.84;ReadPosRankSum=1.204;SOR=2.663;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3624T>C|||||3624|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1743A>G|||||1743|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-209T>C||||||	GT:AD:DP:GQ:PL	0/1:30,88:118:99:1425,0,773	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45880	.	T	C	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=109;Dels=0.00;ExcessHet=3.0103;FS=21.636;HaplotypeScore=8.0319;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=10;MQRankSum=-7.732;QD=12.24;ReadPosRankSum=2.253;SOR=2.463;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3617T>C|||||3617|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1736A>G|||||1736|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-202T>C||||||	GT:AD:DP:GQ:PL	0/1:27,82:109:99:1362,0,728	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45884	.	T	C	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DP=109;Dels=0.00;ExcessHet=3.0103;FS=22.879;HaplotypeScore=8.0319;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=10;MQRankSum=-7.599;QD=10.63;ReadPosRankSum=2.377;SOR=2.409;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3613T>C|||||3613|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1732A>G|||||1732|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-198T>C||||||	GT:AD:DP:GQ:PL	0/1:27,80:109:99:1166,0,708	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45899	.	G	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;DP=107;Dels=0.00;ExcessHet=3.0103;FS=17.301;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=38.27;MQ0=10;MQRankSum=-7.504;QD=10.38;ReadPosRankSum=4.515;SOR=2.475;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3598G>A|||||3598|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1717C>T|||||1717|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-183G>A||||||	GT:AD:DP:GQ:PL	0/1:25,82:107:99:1139,0,668	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45906	.	T	C	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;DP=108;Dels=0.00;ExcessHet=3.0103;FS=16.364;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=10;MQRankSum=-7.610;QD=12.64;ReadPosRankSum=4.838;SOR=2.461;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3591T>C|||||3591|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1710A>G|||||1710|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-176T>C||||||	GT:AD:DP:GQ:PL	0/1:27,81:108:99:1393,0,674	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45908	.	A	G	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;DP=111;Dels=0.00;ExcessHet=3.0103;FS=22.529;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=39.26;MQ0=10;MQRankSum=-7.947;QD=12.03;ReadPosRankSum=5.081;SOR=2.465;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3589A>G|||||3589|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1708T>C|||||1708|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-174A>G||||||	GT:AD:DP:GQ:PL	0/1:29,82:111:99:1364,0,663	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45912	.	G	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=109;Dels=0.00;ExcessHet=3.0103;FS=29.681;HaplotypeScore=11.0662;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=10;MQRankSum=7.615;QD=6.36;ReadPosRankSum=-4.392;SOR=1.204;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3585G>A|||||3585|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1704C>T|||||1704|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-170G>A||||||	GT:AD:DP:GQ:PL	0/1:81,26:109:99:709,0,1337	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45913	.	A	G	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;DP=109;Dels=0.00;ExcessHet=3.0103;FS=25.376;HaplotypeScore=11.0662;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=10;MQRankSum=-7.732;QD=12.14;ReadPosRankSum=4.465;SOR=2.452;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3584A>G|||||3584|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1703T>C|||||1703|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-169A>G||||||	GT:AD:DP:GQ:PL	0/1:27,82:109:99:1352,0,708	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45926	.	T	G	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DP=107;Dels=0.00;ExcessHet=3.0103;FS=21.785;HaplotypeScore=11.9306;MLEAC=1;MLEAF=0.500;MQ=38.27;MQ0=10;MQRankSum=-7.504;QD=12.59;ReadPosRankSum=3.259;SOR=2.450;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3571T>G|||||3571|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1690A>C|||||1690|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-156T>G||||||	GT:AD:DP:GQ:PL	0/1:25,82:107:99:1375,0,656	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	45953	.	A	T	2702.77	.	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4499;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=14;QD=18.90;SOR=1.591;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3544A>T|||||3544|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1663T>A|||||1663|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-129A>T||||||	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2731,217,0	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46002	.	C	G	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.0115;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=12;MQRankSum=-7.228;QD=12.28;ReadPosRankSum=0.441;SOR=0.631;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3495C>G|||||3495|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1614G>C|||||1614|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-80C>G||||||	GT:AD:DP:GQ:PL	0/1:22,112:134:99:1674,0,505	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46009	.	A	G	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.859;HaplotypeScore=10.0030;MLEAC=1;MLEAF=0.500;MQ=35.06;MQ0=10;MQRankSum=-7.388;QD=12.37;ReadPosRankSum=2.528;SOR=0.659;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3488A>G|||||3488|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1607T>C|||||1607|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-73A>G||||||	GT:AD:DP:GQ:PL	0/1:23,110:133:99:1674,0,547	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46010	.	T	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;DP=133;Dels=0.00;ExcessHet=3.0103;FS=1.925;HaplotypeScore=9.2144;MLEAC=1;MLEAF=0.500;MQ=35.06;MQ0=10;MQRankSum=-7.365;QD=11.75;ReadPosRankSum=2.315;SOR=0.634;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3487T>C|||||3487|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1606A>G|||||1606|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-72T>C||||||	GT:AD:DP:GQ:PL	0/1:22,110:133:99:1579,0,554	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46011	.	A	G	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.840;HaplotypeScore=9.0325;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=10;MQRankSum=-7.680;QD=11.97;ReadPosRankSum=2.907;SOR=0.729;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3486A>G|||||3486|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1605T>C|||||1605|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-71A>G||||||	GT:AD:DP:GQ:PL	0/1:25,113:139:99:1680,0,578	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46035	.	A	G	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.781;DP=176;Dels=0.00;ExcessHet=3.0103;FS=9.494;HaplotypeScore=10.1484;MLEAC=1;MLEAF=0.500;MQ=33.36;MQ0=12;MQRankSum=-8.241;QD=10.98;ReadPosRankSum=3.400;SOR=1.342;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3462A>G|||||3462|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1581T>C|||||1581|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-47A>G||||||	GT:AD:DP:GQ:PL	0/1:27,149:176:99:1960,0,700	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46040	.	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;DP=184;Dels=0.00;ExcessHet=3.0103;FS=11.232;HaplotypeScore=10.1484;MLEAC=1;MLEAF=0.500;MQ=33.28;MQ0=12;MQRankSum=8.405;QD=3.49;ReadPosRankSum=-3.259;SOR=0.456;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3457C>T|||||3457|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1576G>A|||||1576|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|1/1|c.100-42C>T||||||	GT:AD:DP:GQ:PL	0/1:156,28:184:99:670,0,2047	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46145	.	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;DP=70;Dels=0.00;ExcessHet=3.0103;FS=45.314;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=38.80;MQ0=0;MQRankSum=-6.982;QD=7.51;ReadPosRankSum=0.373;SOR=7.701;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|2/2|c.163C>A|p.His55Asn|163/177|163/177|55/58||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3352C>A|||||3352|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1471G>T|||||1471|	GT:AD:DP:GQ:PL	0/1:24,46:70:99:554,0,614	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	46155	.	C	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;DP=60;Dels=0.00;ExcessHet=3.0103;FS=33.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.45;MQ0=0;MQRankSum=-6.494;QD=8.46;ReadPosRankSum=-2.120;SOR=7.204;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding|2/2|c.173C>A|p.Ala58Glu|173/177|173/177|58/58||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-3342C>A|||||3342|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.*1461G>T|||||1461|	GT:AD:DP:GQ:PL	0/1:21,39:60:99:536,0,559	scaffold1149_cov63	GLEAN	mRNA	43374	46159	0.50	+	.	ID=Soaet10008867
scaffold1149_cov63	47749	.	G	A	752.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.506C>T|p.Thr169Ile|506/639|506/639|169/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1748G>A|||||1748|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1590G>A|||||1590|	GT:AD:DP:GQ:PL	1/1:0,28:28:57:781,57,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47800	.	G	A	667.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.35;SOR=1.085;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.455C>T|p.Thr152Ile|455/639|455/639|152/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1697G>A|||||1697|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1641G>A|||||1641|	GT:AD:DP:GQ:PL	1/1:0,22:23:51:696,51,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47824	.	T	A	689.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.746;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.74;ReadPosRankSum=0.723;SOR=0.257;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.431A>T|p.Asn144Ile|431/639|431/639|144/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1673T>A|||||1673|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1665T>A|||||1665|	GT:AD:DP:GQ:PL	1/1:1,23:24:30:718,30,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47846	.	T	C	3314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DP=113;Dels=0.00;ExcessHet=3.0103;FS=95.629;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=0;MQRankSum=-9.367;QD=29.33;ReadPosRankSum=-4.695;SOR=9.022;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.409A>G|p.Ile137Val|409/639|409/639|137/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1651T>C|||||1651|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1687T>C|||||1687|	GT:AD:DP:GQ:PL	0/1:23,90:113:99:3343,0,353	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47847	.	A	G	4271.77	.	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=26.32;SOR=4.136;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.408T>C|p.Ser136Ser|408/639|408/639|136/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1650A>G|||||1650|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1688A>G|||||1688|	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4300,316,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47855	.	T	C	4071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;DP=135;Dels=0.00;ExcessHet=3.0103;FS=105.340;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=44.58;MQ0=0;MQRankSum=-10.104;QD=30.16;ReadPosRankSum=-2.498;SOR=9.455;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.400A>G|p.Thr134Ala|400/639|400/639|134/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1642T>C|||||1642|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1696T>C|||||1696|	GT:AD:DP:GQ:PL	0/1:23,112:135:99:4100,0,275	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47865	.	T	C	4488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=143;Dels=0.00;ExcessHet=3.0103;FS=117.623;HaplotypeScore=8.5703;MLEAC=1;MLEAF=0.500;MQ=43.86;MQ0=0;MQRankSum=-10.200;QD=31.39;ReadPosRankSum=-0.185;SOR=9.641;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.390A>G|p.Gln130Gln|390/639|390/639|130/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1632T>C|||||1632|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1706T>C|||||1706|	GT:AD:DP:GQ:PL	0/1:20,123:143:99:4517,0,188	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47871	.	T	C	4573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DP=150;Dels=0.00;ExcessHet=3.0103;FS=107.798;HaplotypeScore=9.4862;MLEAC=1;MLEAF=0.500;MQ=43.45;MQ0=0;MQRankSum=-9.994;QD=30.49;ReadPosRankSum=1.385;SOR=9.735;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|3/3|c.384A>G|p.Val128Val|384/639|384/639|128/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1626T>C|||||1626|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1712T>C|||||1712|	GT:AD:DP:GQ:PL	0/1:21,129:150:99:4602,0,175	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	47980	.	G	A	627.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.53;SOR=0.874;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1517G>A|||||1517|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1821G>A|||||1821|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/2|c.311-36C>T||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:48:656,48,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48025	.	G	A	663.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SOR=0.770;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1472G>A|||||1472|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1866G>A|||||1866|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/2|c.311-81C>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:48:692,48,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48053	.	C	T	750.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.81;SOR=0.765;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1444C>T|||||1444|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1894C>T|||||1894|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/2|c.310+108G>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:28:54:779,54,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48144	.	CACCAACT	C	1102.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.81;RPA=2,1;RU=ACCAACT;SOR=1.022;STR;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1352_-1346delACCAACT|||||1352|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*1986_*1992delACCAACT|||||1986|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/2|c.310+10_310+16delAGTTGGT||||||	GT:AD:DP:GQ:PL	1/1:0,12:17:36:1140,36,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48168	.	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.84;ReadPosRankSum=1.095;SOR=0.636;ANN=T|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.303G>A|p.Ser101Ser|303/639|303/639|101/212||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1329C>T|||||1329|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2009C>T|||||2009|	GT:AD:DP:GQ:PL	0/1:2,12:14:51:348,0,51	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48188	.	A	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=2.9074;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-3.314;QD=4.25;ReadPosRankSum=-1.253;SOR=1.567;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.283T>G|p.Ser95Ala|283/639|283/639|95/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1309A>C|||||1309|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2029A>C|||||2029|	GT:AD:DP:GQ:PL	0/1:15,4:19:99:109,0,399	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48191	.	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9158;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-4.151;QD=5.04;ReadPosRankSum=-0.976;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.280G>A|p.Asp94Asn|280/639|280/639|94/212||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1306C>T|||||1306|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2032C>T|||||2032|	GT:AD:DP:GQ:PL	0/1:14,5:19:99:124,0,425	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48197	.	T	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9158;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-4.272;QD=5.89;ReadPosRankSum=0.307;SOR=0.943;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.274A>G|p.Thr92Ala|274/639|274/639|92/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1300T>C|||||1300|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2038T>C|||||2038|	GT:AD:DP:GQ:PL	0/1:15,5:20:99:146,0,435	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48200	.	C	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-4.151;QD=6.15;ReadPosRankSum=0.974;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.271G>C|p.Ala91Pro|271/639|271/639|91/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1297C>G|||||1297|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2041C>G|||||2041|	GT:AD:DP:GQ:PL	0/1:14,5:19:99:145,0,404	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48202	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-4.151;QD=6.30;ReadPosRankSum=0.975;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.269C>T|p.Ala90Val|269/639|269/639|90/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1295G>A|||||1295|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2043G>A|||||2043|	GT:AD:DP:GQ:PL	0/1:14,5:19:99:148,0,406	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48206	.	T	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-4.151;QD=5.94;ReadPosRankSum=0.974;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.265A>C|p.Met89Leu|265/639|265/639|89/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1291T>G|||||1291|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2047T>G|||||2047|	GT:AD:DP:GQ:PL	0/1:14,5:19:99:141,0,409	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48207	.	A	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-4.333;QD=6.47;ReadPosRankSum=-0.112;SOR=0.941;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.264T>G|p.Ile88Met|264/639|264/639|88/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1290A>C|||||1290|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2048A>C|||||2048|	GT:AD:DP:GQ:PL	0/1:14,7:21:99:164,0,380	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48214	.	C	A	2093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;DP=76;Dels=0.00;ExcessHet=3.0103;FS=12.529;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=48.96;MQ0=0;MQRankSum=-5.591;QD=27.55;ReadPosRankSum=-3.014;SOR=1.965;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.257G>T|p.Gly86Val|257/639|257/639|86/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1283C>A|||||1283|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2055C>A|||||2055|	GT:AD:DP:GQ:PL	0/1:14,62:76:99:2122,0,222	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48219	.	T	C	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DP=81;Dels=0.00;ExcessHet=3.0103;FS=6.198;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=49.59;MQ0=0;MQRankSum=-5.563;QD=26.91;ReadPosRankSum=-0.976;SOR=1.601;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.252A>G|p.Glu84Glu|252/639|252/639|84/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1278T>C|||||1278|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2060T>C|||||2060|	GT:AD:DP:GQ:PL	0/1:15,66:81:99:2208,0,247	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48229	.	C	A	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DP=79;Dels=0.00;ExcessHet=3.0103;FS=6.996;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=49.29;MQ0=0;MQRankSum=-5.015;QD=28.33;ReadPosRankSum=-1.776;SOR=1.828;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.242G>T|p.Trp81Leu|242/639|242/639|81/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1268C>A|||||1268|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2070C>A|||||2070|	GT:AD:DP:GQ:PL	0/1:12,67:79:99:2266,0,230	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48242	.	C	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-3.336;QD=18.79;ReadPosRankSum=0.572;SOR=0.824;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.229G>C|p.Val77Leu|229/639|229/639|77/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1255C>G|||||1255|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2083C>G|||||2083|	GT:AD:DP:GQ:PL	0/1:14,25:39:99:761,0,406	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48243	.	T	G	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-2.750;QD=18.97;ReadPosRankSum=0.854;SOR=0.648;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.228A>C|p.Ile76Ile|228/639|228/639|76/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1254T>G|||||1254|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2084T>G|||||2084|	GT:AD:DP:GQ:PL	0/1:15,24:39:99:768,0,421	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48245	.	T	C	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-3.336;QD=18.92;ReadPosRankSum=0.572;SOR=0.824;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.226A>G|p.Ile76Val|226/639|226/639|76/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1252T>C|||||1252|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2086T>C|||||2086|	GT:AD:DP:GQ:PL	0/1:14,25:39:99:766,0,330	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48246	.	T	A	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-3.336;QD=18.79;ReadPosRankSum=0.617;SOR=0.824;ANN=A|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.225A>T|p.Ala75Ala|225/639|225/639|75/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1251T>A|||||1251|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2087T>A|||||2087|	GT:AD:DP:GQ:PL	0/1:14,25:39:99:761,0,365	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48251	.	T	A	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=-3.077;QD=19.97;ReadPosRankSum=0.174;SOR=0.784;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.220A>T|p.Ile74Leu|220/639|220/639|74/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1246T>A|||||1246|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2092T>A|||||2092|	GT:AD:DP:GQ:PL	0/1:13,27:40:99:827,0,310	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48255	.	G	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-3.073;QD=20.82;ReadPosRankSum=0.458;SOR=0.593;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.216C>G|p.Val72Val|216/639|216/639|72/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1242G>C|||||1242|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2096G>C|||||2096|	GT:AD:DP:GQ:PL	0/1:15,30:45:99:965,0,416	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48257	.	C	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.57;MQ0=0;MQRankSum=-3.187;QD=18.75;ReadPosRankSum=0.961;SOR=0.680;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.214G>T|p.Val72Phe|214/639|214/639|72/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1240C>A|||||1240|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2098C>A|||||2098|	GT:AD:DP:GQ:PL	0/1:17,31:48:99:928,0,431	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48265	.	G	A	6620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2839;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=6;MQRankSum=-1.071;QD=26.48;ReadPosRankSum=-7.565;SOR=0.521;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|2/3|c.206C>T|p.Ala69Val|206/639|206/639|69/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1232G>A|||||1232|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2106G>A|||||2106|	GT:AD:DP:GQ:PL	1/1:19,231:250:51:6649,51,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48289	.	A	C	6798.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.864;DP=238;Dels=0.00;ExcessHet=3.0103;FS=2.268;HaplotypeScore=9.2344;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=1;MQRankSum=-1.734;QD=28.57;ReadPosRankSum=-3.241;SOR=1.065;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1208A>C|||||1208|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2130A>C|||||2130|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.195-13T>G||||||	GT:AD:DP:GQ:PL	1/1:17,221:238:21:6827,21,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48300	.	C	T	5411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;DP=191;Dels=0.00;ExcessHet=3.0103;FS=7.845;HaplotypeScore=12.9819;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=1;MQRankSum=-2.303;QD=28.33;ReadPosRankSum=-1.934;SOR=1.689;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1197C>T|||||1197|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2141C>T|||||2141|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.195-24G>A||||||	GT:AD:DP:GQ:PL	0/1:17,174:191:69:5440,0,69	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48301	.	T	C	5528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DP=188;Dels=0.00;ExcessHet=3.0103;FS=4.154;HaplotypeScore=12.9819;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=1;MQRankSum=-2.201;QD=29.72;ReadPosRankSum=-1.154;SOR=1.384;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1196T>C|||||1196|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2142T>C|||||2142|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.195-25A>G||||||	GT:AD:DP:GQ:PL	0/1:16,170:188:63:5557,0,63	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48304	.	T	C	5429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=189;Dels=0.00;ExcessHet=3.0103;FS=4.015;HaplotypeScore=11.1502;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=1;MQRankSum=-2.243;QD=28.73;ReadPosRankSum=0.680;SOR=1.420;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1193T>C|||||1193|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2145T>C|||||2145|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.195-28A>G||||||	GT:AD:DP:GQ:PL	0/1:16,173:189:43:5458,0,43	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48314	.	T	G	5193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=184;Dels=0.00;ExcessHet=3.0103;FS=5.861;HaplotypeScore=8.4026;MLEAC=1;MLEAF=0.500;MQ=56.98;MQ0=3;MQRankSum=-2.465;QD=28.38;ReadPosRankSum=3.028;SOR=1.609;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1183T>G|||||1183|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2155T>G|||||2155|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.195-38A>C||||||	GT:AD:DP:GQ:PL	0/1:20,163:184:99:5222,0,129	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48327	.	A	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.468;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=2;MQRankSum=-0.874;QD=5.28;ReadPosRankSum=2.094;SOR=2.066;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1170A>T|||||1170|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2168A>T|||||2168|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.195-51T>A||||||	GT:AD:DP:GQ:PL	0/1:21,7:28:99:176,0,489	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48329	.	T	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;DP=26;Dels=0.00;ExcessHet=3.0103;FS=8.846;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=2;MQRankSum=-3.462;QD=4.03;ReadPosRankSum=1.281;SOR=3.056;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-1168T>A|||||1168|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2170T>A|||||2170|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.195-53A>T||||||	GT:AD:DP:GQ:PL	0/1:19,5:26:99:125,0,508	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48564	.	A	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;DP=31;Dels=0.00;ExcessHet=3.0103;FS=12.325;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=0.763;QD=3.67;ReadPosRankSum=-3.587;SOR=3.767;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-933A>C|||||933|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2405A>C|||||2405|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/2|c.194+15T>G||||||	GT:AD:DP:GQ:PL	0/1:25,6:31:99:142,0,728	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48600	.	T	C	7270.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;DP=249;Dels=0.00;ExcessHet=3.0103;FS=3.717;HaplotypeScore=18.5995;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.147;QD=29.20;ReadPosRankSum=-1.594;SOR=1.252;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.173A>G|p.His58Arg|173/639|173/639|58/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-897T>C|||||897|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2441T>C|||||2441|	GT:AD:DP:GQ:PL	1/1:16,233:249:72:7299,72,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48623	.	A	G	8357.77	.	AC=2;AF=1.00;AN=2;DP=246;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3267;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=1;QD=34.25;SOR=0.959;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.150T>C|p.Cys50Cys|150/639|150/639|50/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-874A>G|||||874|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2464A>G|||||2464|	GT:AD:DP:GQ:PL	1/1:0,244:246:99:8386,611,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48626	.	G	C	7716.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.106;DP=250;Dels=0.00;ExcessHet=3.0103;FS=1.055;HaplotypeScore=8.3267;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=1;MQRankSum=-0.414;QD=30.87;ReadPosRankSum=-0.060;SOR=0.948;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.147C>G|p.Ser49Arg|147/639|147/639|49/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-871G>C|||||871|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2467G>C|||||2467|	GT:AD:DP:GQ:PL	1/1:14,236:250:99:7745,148,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48677	.	C	T	7276.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.711;DP=237;Dels=0.00;ExcessHet=3.0103;FS=6.194;HaplotypeScore=13.8138;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=2;MQRankSum=-2.179;QD=30.83;ReadPosRankSum=2.136;SOR=1.709;ANN=T|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.96G>A|p.Lys32Lys|96/639|96/639|32/212||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-820C>T|||||820|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2518C>T|||||2518|	GT:AD:DP:GQ:PL	1/1:14,222:237:65:7305,65,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48679	.	T	G	7337.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.165;DP=236;Dels=0.00;ExcessHet=3.0103;FS=8.111;HaplotypeScore=15.6455;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=2;MQRankSum=-2.179;QD=31.09;ReadPosRankSum=2.356;SOR=1.743;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.94A>C|p.Lys32Gln|94/639|94/639|32/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-818T>G|||||818|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2520T>G|||||2520|	GT:AD:DP:GQ:PL	1/1:14,222:236:99:7366,100,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48690	.	C	G	7333.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.988;DP=247;Dels=0.00;ExcessHet=3.0103;FS=11.566;HaplotypeScore=14.6540;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=2;MQRankSum=-3.035;QD=29.81;ReadPosRankSum=2.277;SOR=2.124;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.83G>C|p.Gly28Ala|83/639|83/639|28/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-807C>G|||||807|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2531C>G|||||2531|	GT:AD:DP:GQ:PL	1/1:15,231:247:66:7362,66,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48708	.	A	G	6414.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.679;DP=235;Dels=0.00;ExcessHet=3.0103;FS=14.291;HaplotypeScore=4.3250;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=2;MQRankSum=-3.756;QD=27.41;ReadPosRankSum=0.891;SOR=2.528;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.65T>C|p.Val22Ala|65/639|65/639|22/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-789A>G|||||789|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2549A>G|||||2549|	GT:AD:DP:GQ:PL	1/1:14,220:234:38:6443,38,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48725	.	T	G	5900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=221;Dels=0.00;ExcessHet=3.0103;FS=48.052;HaplotypeScore=7.4084;MLEAC=1;MLEAF=0.500;MQ=49.16;MQ0=2;MQRankSum=-4.120;QD=26.82;ReadPosRankSum=2.118;SOR=3.665;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.48A>C|p.Ser16Ser|48/639|48/639|16/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-772T>G|||||772|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2566T>G|||||2566|	GT:AD:DP:GQ:PL	0/1:18,202:221:99:5929,0,141	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48730	.	T	C	5950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;DP=217;Dels=0.00;ExcessHet=3.0103;FS=47.563;HaplotypeScore=8.3243;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=2;MQRankSum=-4.636;QD=27.42;ReadPosRankSum=2.119;SOR=3.800;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.43A>G|p.Lys15Glu|43/639|43/639|15/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-767T>C|||||767|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2571T>C|||||2571|	GT:AD:DP:GQ:PL	0/1:18,199:217:99:5979,0,146	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48733	.	G	A	5733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;DP=216;Dels=0.00;ExcessHet=3.0103;FS=44.679;HaplotypeScore=6.4926;MLEAC=1;MLEAF=0.500;MQ=48.88;MQ0=2;MQRankSum=-4.220;QD=26.92;ReadPosRankSum=2.356;SOR=3.825;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.40C>T|p.Leu14Phe|40/639|40/639|14/212||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-764G>A|||||764|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2574G>A|||||2574|	GT:AD:DP:GQ:PL	0/1:20,193:216:99:5762,0,156	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48739	.	G	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DP=212;Dels=0.00;ExcessHet=3.0103;FS=42.546;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=48.65;MQ0=2;MQRankSum=5.047;QD=0.85;ReadPosRankSum=-2.308;SOR=0.380;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.34C>A|p.His12Asn|34/639|34/639|12/212||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-758G>T|||||758|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2580G>T|||||2580|	GT:AD:DP:GQ:PL	0/1:191,20:212:99:207,0,5585	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48745	.	T	C	5531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DP=209;Dels=0.00;ExcessHet=3.0103;FS=33.019;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=48.65;MQ0=1;MQRankSum=-5.464;QD=26.60;ReadPosRankSum=2.841;SOR=3.593;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.28A>G|p.Lys10Glu|28/639|28/639|10/212||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-752T>C|||||752|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2586T>C|||||2586|	GT:AD:DP:GQ:PL	0/1:23,185:209:99:5560,0,234	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48757	.	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;DP=202;Dels=0.00;ExcessHet=3.0103;FS=42.814;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=48.20;MQ0=1;MQRankSum=5.789;QD=1.37;ReadPosRankSum=-3.104;SOR=0.018;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.16G>A|p.Val6Ile|16/639|16/639|6/212||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-740C>T|||||740|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2598C>T|||||2598|	GT:AD:DP:GQ:PL	0/1:177,24:201:99:303,0,5313	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48764	.	A	G	5872.77	.	AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=1;QD=32.45;SOR=3.362;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.9T>C|p.Ser3Ser|9/639|9/639|3/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-733A>G|||||733|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2605A>G|||||2605|	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5901,430,0	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48767	.	A	G	4380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DP=178;Dels=0.00;ExcessHet=3.0103;FS=43.294;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=46.72;MQ0=1;MQRankSum=-6.645;QD=24.61;ReadPosRankSum=2.864;SOR=4.177;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.6T>C|p.Val2Val|6/639|6/639|2/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-730A>G|||||730|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2608A>G|||||2608|	GT:AD:DP:GQ:PL	0/1:25,153:178:99:4409,0,418	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	48772	.	T	G	4361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DP=176;Dels=0.00;ExcessHet=3.0103;FS=50.103;HaplotypeScore=6.4926;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=1;MQRankSum=-6.872;QD=24.92;ReadPosRankSum=2.167;SOR=4.407;ANN=G|initiator_codon_variant|LOW|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding|1/3|c.1A>C|p.Met1?|1/639|1/639|1/212||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding||c.-725T>G|||||725|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*2613T>G|||||2613|	GT:AD:DP:GQ:PL	0/1:26,149:176:99:4390,0,451	scaffold1149_cov63	GLEAN	mRNA	47616	48772	0.98	-	.	ID=Soaet10008868
scaffold1149_cov63	49507	.	CT	C	3476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DP=127;ExcessHet=3.0103;FS=23.058;MLEAC=1;MLEAF=0.500;MQ=56.33;MQ0=0;MQRankSum=-3.687;QD=27.59;RPA=3,2;RU=T;ReadPosRankSum=-0.827;SOR=2.727;STR;ANN=C|frameshift_variant|HIGH|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.14delT|p.Leu5fs|14/444|14/444|5/147||INFO_REALIGN_3_PRIME,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-736delA|||||736|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4959delT|||||4959|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3349delT|||||3349|	GT:AD:DP:GQ:PL	0/1:27,99:127:99:3514,0,686	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49511	.	A	C,G	3939.77	.	AC=1,1;AF=0.500,0.500;AN=2;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.32;MQ0=0;QD=30.54;SOR=2.143;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.15A>C|p.Leu5Phe|15/444|15/444|5/147||,G|synonymous_variant|LOW|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.15A>G|p.Leu5Leu|15/444|15/444|5/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-739T>G|||||739|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-739T>C|||||739|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4956A>C|||||4956|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4956A>G|||||4956|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3352A>C|||||3352|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3352A>G|||||3352|	GT:AD:DP:GQ:PL	1/2:0,101,28:129:99:3968,899,655,3069,0,3000	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49532	.	T	C	3106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;DP=138;Dels=0.00;ExcessHet=3.0103;FS=28.547;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-4.215;QD=22.51;ReadPosRankSum=4.070;SOR=2.847;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.36T>C|p.Asn12Asn|36/444|36/444|12/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-760A>G|||||760|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4935T>C|||||4935|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3373T>C|||||3373|	GT:AD:DP:GQ:PL	0/1:29,109:138:99:3135,0,650	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49545	.	G	C	3078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;DP=138;Dels=0.00;ExcessHet=3.0103;FS=24.449;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-4.215;QD=22.31;ReadPosRankSum=5.699;SOR=2.733;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.49G>C|p.Ala17Pro|49/444|49/444|17/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-773C>G|||||773|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4922G>C|||||4922|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3386G>C|||||3386|	GT:AD:DP:GQ:PL	0/1:29,109:138:99:3107,0,714	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49575	.	A	G	4333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;DP=197;Dels=0.00;ExcessHet=3.0103;FS=20.014;HaplotypeScore=9.1587;MLEAC=1;MLEAF=0.500;MQ=51.61;MQ0=0;MQRankSum=-5.980;QD=22.00;ReadPosRankSum=-0.360;SOR=2.229;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.79A>G|p.Arg27Gly|79/444|79/444|27/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-803T>C|||||803|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4892A>G|||||4892|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3416A>G|||||3416|	GT:AD:DP:GQ:PL	0/1:33,164:197:99:4362,0,623	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49580	.	T	G	4587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DP=211;Dels=0.00;ExcessHet=3.0103;FS=16.838;HaplotypeScore=8.3261;MLEAC=1;MLEAF=0.500;MQ=51.71;MQ0=0;MQRankSum=-5.994;QD=21.74;ReadPosRankSum=-1.145;SOR=2.062;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.84T>G|p.Ile28Met|84/444|84/444|28/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-808A>C|||||808|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4887T>G|||||4887|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3421T>G|||||3421|	GT:AD:DP:GQ:PL	0/1:32,179:211:99:4616,0,579	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49594	.	G	C	5404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=248;Dels=0.00;ExcessHet=3.0103;FS=10.474;HaplotypeScore=10.9466;MLEAC=1;MLEAF=0.500;MQ=51.89;MQ0=0;MQRankSum=-5.225;QD=21.79;ReadPosRankSum=-4.568;SOR=1.675;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.98G>C|p.Arg33Pro|98/444|98/444|33/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-822C>G|||||822|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4873G>C|||||4873|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3435G>C|||||3435|	GT:AD:DP:GQ:PL	0/1:28,220:248:99:5433,0,385	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49612	.	T	C	5633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DP=250;Dels=0.00;ExcessHet=3.0103;FS=9.435;HaplotypeScore=9.0315;MLEAC=1;MLEAF=0.500;MQ=51.05;MQ0=0;MQRankSum=-5.669;QD=22.54;ReadPosRankSum=-2.881;SOR=1.246;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.116T>C|p.Leu39Pro|116/444|116/444|39/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-840A>G|||||840|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4855T>C|||||4855|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3453T>C|||||3453|	GT:AD:DP:GQ:PL	0/1:30,220:250:99:5662,0,403	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49620	.	A	G	5670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.564;DP=250;Dels=0.00;ExcessHet=3.0103;FS=7.622;HaplotypeScore=8.1971;MLEAC=1;MLEAF=0.500;MQ=50.79;MQ0=0;MQRankSum=-5.911;QD=22.68;ReadPosRankSum=-1.465;SOR=1.103;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.124A>G|p.Arg42Gly|124/444|124/444|42/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-848T>C|||||848|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4847A>G|||||4847|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3461A>G|||||3461|	GT:AD:DP:GQ:PL	0/1:30,220:250:99:5699,0,360	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49629	.	T	G	5770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DP=250;Dels=0.00;ExcessHet=3.0103;FS=2.656;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=49.80;MQ0=0;MQRankSum=-5.940;QD=23.08;ReadPosRankSum=-1.113;SOR=0.606;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.133T>G|p.Tyr45Asp|133/444|133/444|45/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-857A>C|||||857|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4838T>G|||||4838|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3470T>G|||||3470|	GT:AD:DP:GQ:PL	0/1:27,223:250:99:5799,0,347	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49644	.	T	G	5631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;DP=248;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2671;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=0;MQRankSum=-5.797;QD=22.71;ReadPosRankSum=1.744;SOR=0.699;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.148T>G|p.Phe50Val|148/444|148/444|50/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-872A>C|||||872|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4823T>G|||||4823|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3485T>G|||||3485|	GT:AD:DP:GQ:PL	0/1:25,223:248:99:5660,0,298	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49646	.	T	A	5293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=249;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3512;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-5.492;QD=21.35;ReadPosRankSum=1.172;SOR=0.633;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.150T>A|p.Phe50Leu|150/444|150/444|50/147||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-874A>T|||||874|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4821T>A|||||4821|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3487T>A|||||3487|	GT:AD:DP:GQ:PL	0/1:22,226:249:99:5322,0,273	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49662	.	T	G	5431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;DP=247;Dels=0.00;ExcessHet=3.0103;FS=0.938;HaplotypeScore=4.5279;MLEAC=1;MLEAF=0.500;MQ=47.63;MQ0=0;MQRankSum=-5.134;QD=22.08;ReadPosRankSum=1.899;SOR=0.828;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.166T>G|p.Ser56Ala|166/444|166/444|56/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-890A>C|||||890|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4805T>G|||||4805|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3503T>G|||||3503|	GT:AD:DP:GQ:PL	0/1:21,225:247:99:5460,0,188	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49666	.	A	G	5474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=247;Dels=0.00;ExcessHet=3.0103;FS=1.881;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=0;MQRankSum=-4.678;QD=22.26;ReadPosRankSum=2.416;SOR=0.828;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.170A>G|p.His57Arg|170/444|170/444|57/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-894T>C|||||894|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4801A>G|||||4801|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3507A>G|||||3507|	GT:AD:DP:GQ:PL	0/1:21,225:247:99:5503,0,245	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49667	.	T	C	5411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.987;DP=249;Dels=0.00;ExcessHet=3.0103;FS=3.171;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=47.35;MQ0=0;MQRankSum=-4.802;QD=21.73;ReadPosRankSum=2.365;SOR=0.762;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.171T>C|p.His57His|171/444|171/444|57/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-895A>G|||||895|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4800T>C|||||4800|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3508T>C|||||3508|	GT:AD:DP:GQ:PL	0/1:23,226:249:99:5440,0,220	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49707	.	C	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DP=243;Dels=0.00;ExcessHet=3.0103;FS=1.958;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=45.25;MQ0=1;MQRankSum=4.459;QD=0.67;ReadPosRankSum=-1.369;SOR=0.484;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.211C>A|p.His71Asn|211/444|211/444|71/147||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-935G>T|||||935|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4760C>A|||||4760|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3548C>A|||||3548|	GT:AD:DP:GQ:PL	0/1:224,19:243:99:190,0,5123	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49711	.	T	C	4951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.261;DP=239;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=45.32;MQ0=1;MQRankSum=-4.403;QD=20.72;ReadPosRankSum=1.129;SOR=0.942;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.215T>C|p.Phe72Ser|215/444|215/444|72/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-939A>G|||||939|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4756T>C|||||4756|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3552T>C|||||3552|	GT:AD:DP:GQ:PL	0/1:19,220:239:99:4980,0,246	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49724	.	C	T	17.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;DP=232;Dels=0.00;ExcessHet=3.0103;FS=5.664;HaplotypeScore=8.3186;MLEAC=1;MLEAF=0.500;MQ=45.67;MQ0=1;MQRankSum=3.599;QD=0.08;ReadPosRankSum=-0.208;SOR=0.761;ANN=T|synonymous_variant|LOW|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.228C>T|p.Ala76Ala|228/444|228/444|76/147||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-952G>A|||||952|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4743C>T|||||4743|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3565C>T|||||3565|	GT:AD:DP:GQ:PL	0/1:218,14:232:46:46,0,5136	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49743	.	T	C	4450.77	.	AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=1;QD=24.45;SOR=1.063;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.247T>C|p.Ser83Pro|247/444|247/444|83/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-971A>G|||||971|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4724T>C|||||4724|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3584T>C|||||3584|	GT:AD:DP:GQ:PL	1/1:0,182:182:99:4479,346,0	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49755	.	A	G	2426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DP=143;Dels=0.00;ExcessHet=3.0103;FS=11.175;HaplotypeScore=68.6803;MLEAC=1;MLEAF=0.500;MQ=39.79;MQ0=1;MQRankSum=-6.022;QD=17.09;ReadPosRankSum=-1.048;SOR=1.353;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.259A>G|p.Asn87Asp|259/444|259/444|87/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-983T>C|||||983|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4712A>G|||||4712|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3596A>G|||||3596|	GT:AD:DP:GQ:PL	0/1:19,123:143:99:2455,0,342	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49765	.	C	CAAGT	5224.73	.	AC=2;AF=1.00;AN=2;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=28.27;SOR=1.577;ANN=CAAGT|frameshift_variant|HIGH|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.269_270insAAGT|p.Leu91fs|270/444|270/444|90/147||,CAAGT|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-994_-993insACTT|||||994|,CAAGT|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4702_-4701insAAGT|||||4701|,CAAGT|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3606_*3607insAAGT|||||3607|;LOF=(EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,72:75:99:5262,217,0	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49770	.	G	A	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DP=104;Dels=0.00;ExcessHet=3.0103;FS=10.741;HaplotypeScore=50.2038;MLEAC=1;MLEAF=0.500;MQ=32.52;MQ0=1;MQRankSum=6.383;QD=3.07;ReadPosRankSum=2.735;SOR=0.573;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.274G>A|p.Ala92Thr|274/444|274/444|92/147||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-998C>T|||||998|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4697G>A|||||4697|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3611G>A|||||3611|	GT:AD:DP:GQ:PL	0/1:88,16:104:99:348,0,1191	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49776	.	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=1;QD=17.41;SOR=1.496;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.280A>G|p.Asn94Asp|280/444|280/444|94/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1004T>C|||||1004|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4691A>G|||||4691|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3617A>G|||||3617|	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1804,147,0	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49790	.	T	C	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;DP=112;Dels=0.00;ExcessHet=3.0103;FS=23.829;HaplotypeScore=3.4127;MLEAC=1;MLEAF=0.500;MQ=41.15;MQ0=1;MQRankSum=-5.866;QD=14.81;ReadPosRankSum=-2.786;SOR=2.640;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.294T>C|p.His98His|294/444|294/444|98/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1018A>G|||||1018|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4677T>C|||||4677|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3631T>C|||||3631|	GT:AD:DP:GQ:PL	0/1:20,92:112:99:1687,0,520	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49816	.	A	C	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DP=110;Dels=0.00;ExcessHet=3.0103;FS=19.792;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=43.80;MQ0=1;MQRankSum=-6.134;QD=16.48;ReadPosRankSum=-1.188;SOR=2.624;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.320A>C|p.His107Pro|320/444|320/444|107/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1044T>G|||||1044|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4651A>C|||||4651|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3657A>C|||||3657|	GT:AD:DP:GQ:PL	0/1:19,91:110:99:1841,0,415	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49839	.	T	C	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;DP=91;Dels=0.00;ExcessHet=3.0103;FS=17.122;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=47.11;MQ0=0;MQRankSum=-5.816;QD=18.04;ReadPosRankSum=3.709;SOR=3.352;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.343T>C|p.Cys115Arg|343/444|343/444|115/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1067A>G|||||1067|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4628T>C|||||4628|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3680T>C|||||3680|	GT:AD:DP:GQ:PL	0/1:18,73:91:99:1670,0,495	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49854	.	A	G	2555.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.722;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-1.204;QD=26.90;ReadPosRankSum=1.352;SOR=1.258;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.358A>G|p.Arg120Gly|358/444|358/444|120/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1082T>C|||||1082|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4613A>G|||||4613|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3695A>G|||||3695|	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2584,198,0	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49860	.	A	G	1661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;DP=96;Dels=0.00;ExcessHet=3.0103;FS=20.289;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=47.83;MQ0=0;MQRankSum=-6.248;QD=17.31;ReadPosRankSum=3.680;SOR=3.198;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.364A>G|p.Lys122Glu|364/444|364/444|122/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1088T>C|||||1088|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4607A>G|||||4607|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3701A>G|||||3701|	GT:AD:DP:GQ:PL	0/1:23,73:96:99:1690,0,611	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49901	.	T	C	1696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;DP=93;Dels=0.00;ExcessHet=3.0103;FS=23.433;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=47.38;MQ0=0;MQRankSum=-5.876;QD=18.24;ReadPosRankSum=-3.614;SOR=3.352;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.405T>C|p.Tyr135Tyr|405/444|405/444|135/147||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1129A>G|||||1129|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4566T>C|||||4566|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3742T>C|||||3742|	GT:AD:DP:GQ:PL	0/1:20,73:93:99:1725,0,494	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49904	.	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=93;Dels=0.00;ExcessHet=3.0103;FS=23.113;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=47.38;MQ0=0;MQRankSum=5.885;QD=5.40;ReadPosRankSum=3.880;SOR=0.036;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.408A>G|p.Gly136Gly|408/444|408/444|136/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1132T>C|||||1132|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4563A>G|||||4563|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3745A>G|||||3745|	GT:AD:DP:GQ:PL	0/1:73,20:93:99:530,0,1623	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49918	.	A	G	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;DP=66;Dels=0.00;ExcessHet=3.0103;FS=14.777;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=51.00;MQ0=0;MQRankSum=-5.106;QD=14.92;ReadPosRankSum=-2.667;SOR=2.956;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.422A>G|p.His141Arg|422/444|422/444|141/147||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1146T>C|||||1146|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4549A>G|||||4549|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3759A>G|||||3759|	GT:AD:DP:GQ:PL	0/1:23,43:66:99:1013,0,615	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	49922	.	G	T	1870.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=1.411;QD=31.18;ReadPosRankSum=1.734;SOR=0.984;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_49497_49940|GENE_EXON_scaffold1149_cov63_49497_49940|transcript|Soaet10008869|protein_coding|1/1|c.426G>T|p.Gln142His|426/444|426/444|142/147||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_47616_47944|GENE_EXON_scaffold1149_cov63_47616_47944|transcript|Soaet10008868|protein_coding||c.-1150C>A|||||1150|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_54467_54563|GENE_EXON_scaffold1149_cov63_54467_54563|transcript|Soaet10008870|protein_coding||c.-4545G>T|||||4545|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_43374_43472|GENE_EXON_scaffold1149_cov63_43374_43472|transcript|Soaet10008867|protein_coding||c.*3763G>T|||||3763|	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1899,144,0	scaffold1149_cov63	GLEAN	mRNA	49497	49940	0.97	+	.	ID=Soaet10008869
scaffold1149_cov63	60206	.	T	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.017;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=45.00;MQ0=1;MQRankSum=-6.604;QD=10.09;ReadPosRankSum=-2.056;SOR=1.116;ANN=C|stop_lost&splice_region_variant|HIGH|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.158A>G|p.Ter53Trpext*?|158/159|158/159|53/52||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.-59T>C|||||59|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2720T>C|||||2720|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3633A>G|||||3633|	GT:AD:DP:GQ:PL	0/1:30,53:83:99:866,0,797	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60207	.	A	G	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.038;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=44.57;MQ0=1;MQRankSum=-6.787;QD=9.17;ReadPosRankSum=-1.750;SOR=1.150;ANN=G|stop_lost&splice_region_variant|HIGH|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.157T>C|p.Ter53Glnext*?|157/159|157/159|53/52||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.-58A>G|||||58|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2719A>G|||||2719|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3632T>C|||||3632|	GT:AD:DP:GQ:PL	0/1:30,51:81:99:771,0,799	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60235	.	A	G	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.772;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=43.97;MQ0=1;MQRankSum=-7.852;QD=11.10;ReadPosRankSum=-0.041;SOR=0.920;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.129T>C|p.Gly43Gly|129/159|129/159|43/52||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.-30A>G|||||30|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2691A>G|||||2691|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3604T>C|||||3604|	GT:AD:DP:GQ:PL	0/1:31,55:86:99:983,0,758	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60246	.	A	G	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.927;HaplotypeScore=2.4968;MLEAC=1;MLEAF=0.500;MQ=45.16;MQ0=1;MQRankSum=-7.626;QD=12.02;ReadPosRankSum=-0.097;SOR=1.297;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.118T>C|p.Leu40Leu|118/159|118/159|40/52||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.-19A>G|||||19|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2680A>G|||||2680|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3593T>C|||||3593|	GT:AD:DP:GQ:PL	0/1:31,67:98:99:1206,0,778	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60250	.	T	C	2459.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.161;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9095;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=1;MQRankSum=-1.126;QD=24.12;ReadPosRankSum=1.733;SOR=0.572;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.114A>G|p.Gln38Gln|114/159|114/159|38/52||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.-15T>C|||||15|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2676T>C|||||2676|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3589A>G|||||3589|	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2488,184,0	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60279	.	T	A	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=44.99;MQ0=1;MQRankSum=-7.982;QD=11.67;ReadPosRankSum=2.108;SOR=1.077;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.85A>T|p.Thr29Ser|85/159|85/159|29/52||,A|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.15T>A|p.Ser5Arg|15/234|15/234|5/77||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2647T>A|||||2647|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3560A>T|||||3560|	GT:AD:DP:GQ:PL	0/1:33,70:103:99:1230,0,930	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60279	.	T	A	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=44.99;MQ0=1;MQRankSum=-7.982;QD=11.67;ReadPosRankSum=2.108;SOR=1.077;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.85A>T|p.Thr29Ser|85/159|85/159|29/52||,A|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.15T>A|p.Ser5Arg|15/234|15/234|5/77||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2647T>A|||||2647|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3560A>T|||||3560|	GT:AD:DP:GQ:PL	0/1:33,70:103:99:1230,0,930	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60294	.	C	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.034;HaplotypeScore=6.8254;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=2;MQRankSum=-7.227;QD=12.77;ReadPosRankSum=1.270;SOR=1.269;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.70G>C|p.Asp24His|70/159|70/159|24/52||,G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.30C>G|p.Ile10Met|30/234|30/234|10/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2632C>G|||||2632|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3545G>C|||||3545|	GT:AD:DP:GQ:PL	0/1:28,68:96:99:1254,0,759	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60294	.	C	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.034;HaplotypeScore=6.8254;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=2;MQRankSum=-7.227;QD=12.77;ReadPosRankSum=1.270;SOR=1.269;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.70G>C|p.Asp24His|70/159|70/159|24/52||,G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.30C>G|p.Ile10Met|30/234|30/234|10/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2632C>G|||||2632|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3545G>C|||||3545|	GT:AD:DP:GQ:PL	0/1:28,68:96:99:1254,0,759	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60332	.	A	G	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2444;MLEAC=1;MLEAF=0.500;MQ=48.59;MQ0=1;MQRankSum=-6.010;QD=13.83;ReadPosRankSum=0.826;SOR=0.731;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.32T>C|p.Met11Thr|32/159|32/159|11/52||,G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.68A>G|p.His23Arg|68/234|68/234|23/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2594A>G|||||2594|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3507T>C|||||3507|	GT:AD:DP:GQ:PL	0/1:24,41:65:99:927,0,684	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60332	.	A	G	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2444;MLEAC=1;MLEAF=0.500;MQ=48.59;MQ0=1;MQRankSum=-6.010;QD=13.83;ReadPosRankSum=0.826;SOR=0.731;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.32T>C|p.Met11Thr|32/159|32/159|11/52||,G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.68A>G|p.His23Arg|68/234|68/234|23/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2594A>G|||||2594|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3507T>C|||||3507|	GT:AD:DP:GQ:PL	0/1:24,41:65:99:927,0,684	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60333	.	T	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.977;HaplotypeScore=5.2444;MLEAC=1;MLEAF=0.500;MQ=48.59;MQ0=1;MQRankSum=-5.992;QD=14.75;ReadPosRankSum=1.001;SOR=0.858;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.31A>G|p.Met11Val|31/159|31/159|11/52||,C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.69T>C|p.His23His|69/234|69/234|23/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2593T>C|||||2593|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3506A>G|||||3506|	GT:AD:DP:GQ:PL	0/1:23,42:65:99:987,0,680	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60333	.	T	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.977;HaplotypeScore=5.2444;MLEAC=1;MLEAF=0.500;MQ=48.59;MQ0=1;MQRankSum=-5.992;QD=14.75;ReadPosRankSum=1.001;SOR=0.858;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.31A>G|p.Met11Val|31/159|31/159|11/52||,C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.69T>C|p.His23His|69/234|69/234|23/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2593T>C|||||2593|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3506A>G|||||3506|	GT:AD:DP:GQ:PL	0/1:23,42:65:99:987,0,680	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60347	.	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.447;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=49.47;MQ0=0;MQRankSum=-6.436;QD=14.26;ReadPosRankSum=0.680;SOR=0.846;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.17T>C|p.Val6Ala|17/159|17/159|6/52||,G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.83A>G|p.Asn28Ser|83/234|83/234|28/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2579A>G|||||2579|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3492T>C|||||3492|	GT:AD:DP:GQ:PL	0/1:24,41:65:99:955,0,686	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60347	.	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.447;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=49.47;MQ0=0;MQRankSum=-6.436;QD=14.26;ReadPosRankSum=0.680;SOR=0.846;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.17T>C|p.Val6Ala|17/159|17/159|6/52||,G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.83A>G|p.Asn28Ser|83/234|83/234|28/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2579A>G|||||2579|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3492T>C|||||3492|	GT:AD:DP:GQ:PL	0/1:24,41:65:99:955,0,686	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60351	.	T	C	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.117;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=49.64;MQ0=0;MQRankSum=-6.535;QD=13.78;ReadPosRankSum=0.377;SOR=0.899;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.13A>G|p.Arg5Gly|13/159|13/159|5/52||,C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.87T>C|p.Pro29Pro|87/234|87/234|29/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2575T>C|||||2575|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3488A>G|||||3488|	GT:AD:DP:GQ:PL	0/1:25,41:66:99:938,0,647	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60351	.	T	C	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.117;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=49.64;MQ0=0;MQRankSum=-6.535;QD=13.78;ReadPosRankSum=0.377;SOR=0.899;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.13A>G|p.Arg5Gly|13/159|13/159|5/52||,C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.87T>C|p.Pro29Pro|87/234|87/234|29/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2575T>C|||||2575|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3488A>G|||||3488|	GT:AD:DP:GQ:PL	0/1:25,41:66:99:938,0,647	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60354	.	T	C	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.495;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=49.84;MQ0=0;MQRankSum=-6.373;QD=14.33;ReadPosRankSum=-0.382;SOR=0.862;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.10A>G|p.Thr4Ala|10/159|10/159|4/52||,C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.90T>C|p.Cys30Cys|90/234|90/234|30/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2572T>C|||||2572|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3485A>G|||||3485|	GT:AD:DP:GQ:PL	0/1:24,39:64:99:931,0,706	scaffold1149_cov63	GLEAN	mRNA	60205	60363	0.97	-	.	ID=Soaet10008871
scaffold1149_cov63	60354	.	T	C	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.495;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=49.84;MQ0=0;MQRankSum=-6.373;QD=14.33;ReadPosRankSum=-0.382;SOR=0.862;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding|1/1|c.10A>G|p.Thr4Ala|10/159|10/159|4/52||,C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.90T>C|p.Cys30Cys|90/234|90/234|30/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2572T>C|||||2572|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3485A>G|||||3485|	GT:AD:DP:GQ:PL	0/1:24,39:64:99:931,0,706	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60369	.	A	G	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.794;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.47;MQ0=0;MQRankSum=-6.057;QD=13.66;ReadPosRankSum=-2.817;SOR=1.132;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.105A>G|p.Pro35Pro|105/234|105/234|35/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-6T>C|||||6|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2557A>G|||||2557|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3470T>C|||||3470|	GT:AD:DP:GQ:PL	0/1:23,33:56:99:793,0,652	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60374	.	T	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.658;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.69;MQ0=0;MQRankSum=-5.972;QD=12.88;ReadPosRankSum=-3.354;SOR=1.365;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.110T>C|p.Met37Thr|110/234|110/234|37/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-11A>G|||||11|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2552T>C|||||2552|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3465A>G|||||3465|	GT:AD:DP:GQ:PL	0/1:23,31:54:99:724,0,537	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60382	.	T	C	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;DP=30;Dels=0.00;ExcessHet=3.0103;FS=10.462;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-4.178;QD=9.56;ReadPosRankSum=-3.709;SOR=3.436;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.118T>C|p.Leu40Leu|118/234|118/234|40/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-19A>G|||||19|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2544T>C|||||2544|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3457A>G|||||3457|	GT:AD:DP:GQ:PL	0/1:19,11:30:99:315,0,491	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60383	.	T	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;DP=30;Dels=0.00;ExcessHet=3.0103;FS=13.601;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-4.178;QD=9.43;ReadPosRankSum=-3.814;SOR=3.436;ANN=A|stop_gained|HIGH|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.119T>A|p.Leu40*|119/234|119/234|40/77||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-20A>T|||||20|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2543T>A|||||2543|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3456A>T|||||3456|	GT:AD:DP:GQ:PL	0/1:19,11:30:99:311,0,557	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60390	.	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;DP=27;Dels=0.00;ExcessHet=3.0103;FS=12.709;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-5.013;QD=4.92;ReadPosRankSum=-2.393;SOR=3.909;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.126A>G|p.Leu42Leu|126/234|126/234|42/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-27T>C|||||27|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2536A>G|||||2536|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3449T>C|||||3449|	GT:AD:DP:GQ:PL	0/1:21,6:27:99:161,0,590	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60395	.	T	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-3.890;QD=1.77;ReadPosRankSum=-2.029;SOR=1.460;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.131T>A|p.Val44Asp|131/234|131/234|44/77||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-32A>T|||||32|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2531T>A|||||2531|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3444A>T|||||3444|	GT:AD:DP:GQ:PL	0/1:19,4:23:69:69,0,531	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60411	.	A	G	591.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.88;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.147A>G|p.Thr49Thr|147/234|147/234|49/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-48T>C|||||48|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2515A>G|||||2515|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3428T>C|||||3428|	GT:AD:DP:GQ:PL	1/1:0,18:18:45:620,45,0	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60474	.	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DP=40;Dels=0.00;ExcessHet=3.0103;FS=12.128;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-5.652;QD=2.54;ReadPosRankSum=-1.387;SOR=2.833;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.210T>C|p.Leu70Leu|210/234|210/234|70/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-111A>G|||||111|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2452T>C|||||2452|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3365A>G|||||3365|	GT:AD:DP:GQ:PL	0/1:22,18:40:99:130,0,606	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60475	.	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DP=40;Dels=0.00;ExcessHet=3.0103;FS=13.337;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-5.652;QD=2.57;ReadPosRankSum=-1.197;SOR=2.833;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.211A>G|p.Ser71Gly|211/234|211/234|71/77||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-112T>C|||||112|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2451A>G|||||2451|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3364T>C|||||3364|	GT:AD:DP:GQ:PL	0/1:22,18:40:99:131,0,629	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60478	.	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=22.56;SOR=1.464;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.214T>C|p.Phe72Leu|214/234|214/234|72/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-115A>G|||||115|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2448T>C|||||2448|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3361A>G|||||3361|	GT:AD:DP:GQ:PL	1/1:0,46:46:78:1066,78,0	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	60494	.	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;DP=73;Dels=0.00;ExcessHet=3.0103;FS=14.540;HaplotypeScore=5.4955;MLEAC=1;MLEAF=0.500;MQ=50.15;MQ0=2;MQRankSum=4.138;QD=6.19;ReadPosRankSum=2.415;SOR=0.649;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding|1/1|c.230G>A|p.Ser77Asn|230/234|230/234|77/77||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-131C>T|||||131|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.-2432G>A|||||2432|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding||c.*3345C>T|||||3345|	GT:AD:DP:GQ:PL	0/1:52,19:73:99:468,0,1238	scaffold1149_cov63	GLEAN	mRNA	60265	60498	0.93	+	.	ID=Soaet10008872
scaffold1149_cov63	63885	.	C	T	3577.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.015;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4127;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;MQRankSum=1.615;QD=31.66;ReadPosRankSum=-1.534;SOR=1.085;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding|1/1|c.128G>A|p.Ser43Asn|128/174|128/174|43/57||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-3522G>A|||||3522|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.*3387C>T|||||3387|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.*774C>T|||||774|	GT:AD:DP:GQ:PL	1/1:1,112:113:99:3606,274,0	scaffold1149_cov63	GLEAN	mRNA	63839	64012	0.97	-	.	ID=Soaet10008875
scaffold1149_cov63	63914	.	A	G	4973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;DP=202;Dels=0.00;ExcessHet=3.0103;FS=56.712;HaplotypeScore=11.2176;MLEAC=1;MLEAF=0.500;MQ=50.00;MQ0=0;MQRankSum=-3.393;QD=24.75;ReadPosRankSum=-1.886;SOR=2.919;ANN=G|synonymous_variant|LOW|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding|1/1|c.99T>C|p.Ser33Ser|99/174|99/174|33/57||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-3551T>C|||||3551|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.*3416A>G|||||3416|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.*803A>G|||||803|	GT:AD:DP:GQ:PL	0/1:35,166:202:99:5002,0,737	scaffold1149_cov63	GLEAN	mRNA	63839	64012	0.97	-	.	ID=Soaet10008875
scaffold1149_cov63	63950	.	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DP=250;Dels=0.00;ExcessHet=3.0103;FS=32.393;HaplotypeScore=11.9063;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-0.665;QD=1.14;ReadPosRankSum=-0.637;SOR=1.155;ANN=T|synonymous_variant|LOW|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding|1/1|c.63G>A|p.Lys21Lys|63/174|63/174|21/57||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-3587G>A|||||3587|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.*3452C>T|||||3452|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.*839C>T|||||839|	GT:AD:DP:GQ:PL	0/1:222,28:250:99:312,0,6865	scaffold1149_cov63	GLEAN	mRNA	63839	64012	0.97	-	.	ID=Soaet10008875
scaffold1149_cov63	63965	.	T	C	7113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DP=250;Dels=0.00;ExcessHet=3.0103;FS=21.188;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=-0.871;QD=28.46;ReadPosRankSum=1.762;SOR=1.135;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding|1/1|c.48A>G|p.Leu16Leu|48/174|48/174|16/57||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-3602A>G|||||3602|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.*3467T>C|||||3467|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.*854T>C|||||854|	GT:AD:DP:GQ:PL	0/1:24,226:250:99:7142,0,183	scaffold1149_cov63	GLEAN	mRNA	63839	64012	0.97	-	.	ID=Soaet10008875
scaffold1149_cov63	64011	.	A	G	8110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.190;DP=250;Dels=0.00;ExcessHet=3.0103;FS=5.248;HaplotypeScore=21.6808;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=1;MQRankSum=-3.005;QD=32.44;ReadPosRankSum=0.689;SOR=0.802;ANN=G|start_lost|HIGH|EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|transcript|Soaet10008875|protein_coding|1/1|c.2T>C|p.Met1?|2/174|2/174|1/57||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60205_60363|GENE_EXON_scaffold1149_cov63_60205_60363|transcript|Soaet10008871|protein_coding||c.-3648T>C|||||3648|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_60265_60498|GENE_EXON_scaffold1149_cov63_60265_60498|transcript|Soaet10008872|protein_coding||c.*3513A>G|||||3513|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_62926_63111|GENE_EXON_scaffold1149_cov63_62926_63111|transcript|Soaet10008874|protein_coding||c.*900A>G|||||900|;LOF=(EXON_scaffold1149_cov63_63839_64012|GENE_EXON_scaffold1149_cov63_63839_64012|1|1.00)	GT:AD:DP:GQ:PL	1/1:8,242:250:99:8139,348,0	scaffold1149_cov63	GLEAN	mRNA	63839	64012	0.97	-	.	ID=Soaet10008875
scaffold1149_cov63	79520	.	A	T	1836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;DP=106;Dels=0.00;ExcessHet=3.0103;FS=73.225;HaplotypeScore=12.8106;MLEAC=1;MLEAF=0.500;MQ=40.18;MQ0=2;MQRankSum=-7.805;QD=17.49;ReadPosRankSum=-3.035;SOR=7.353;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|2/2|c.202T>A|p.Ser68Thr|202/222|202/222|68/73||	GT:AD:DP:GQ:PL	0/1:24,81:106:99:1865,0,527	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79552	.	A	G	930.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=26.7413;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=17.56;SOR=1.791;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|2/2|c.170T>C|p.Ile57Thr|170/222|170/222|57/73||	GT:AD:DP:GQ:PL	1/1:0,53:53:72:959,72,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79555	.	C	CCCCCCT	2167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;DP=52;ExcessHet=3.0103;FS=10.474;MLEAC=1;MLEAF=0.500;MQ=44.84;MQ0=0;MQRankSum=5.443;QD=29.58;ReadPosRankSum=0.416;SOR=0.727;ANN=CCCCCCT|conservative_inframe_insertion|MODERATE|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|2/2|c.166_167insAGGGGG|p.Gly55_Gly56insGluGly|166/222|166/222|56/73||	GT:AD:DP:GQ:PL	0/1:3,27:31:99:2205,0,140	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79612	.	A	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DP=45;Dels=0.00;ExcessHet=3.0103;FS=12.366;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=49.33;MQ0=0;MQRankSum=-6.425;QD=1.35;ReadPosRankSum=-1.755;SOR=5.669;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|2/2|c.110T>C|p.Leu37Pro|110/222|110/222|37/73||	GT:AD:DP:GQ:PL	0/1:29,16:45:89:89,0,804	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79632	.	T	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;DP=36;Dels=0.00;ExcessHet=3.0103;FS=12.799;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=-5.844;QD=1.69;ReadPosRankSum=1.180;SOR=4.169;ANN=G|splice_region_variant&synonymous_variant|LOW|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|2/2|c.90A>C|p.Ile30Ile|90/222|90/222|30/73||	GT:AD:DP:GQ:PL	0/1:29,7:36:89:89,0,798	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79633	.	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;DP=36;Dels=0.00;ExcessHet=3.0103;FS=12.799;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=-5.844;QD=1.60;ReadPosRankSum=1.160;SOR=4.169;ANN=G|missense_variant&splice_region_variant|MODERATE|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|2/2|c.89T>C|p.Ile30Thr|89/222|89/222|30/73||	GT:AD:DP:GQ:PL	0/1:29,7:36:86:86,0,848	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79644	.	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.357;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=5.468;QD=22.99;ReadPosRankSum=-0.640;SOR=0.100;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-10G>A||||||	GT:AD:DP:GQ:PL	0/1:7,30:37:79:879,0,79	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79647	.	G	C	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DP=37;Dels=0.00;ExcessHet=3.0103;FS=8.994;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=-5.226;QD=0.64;ReadPosRankSum=1.156;SOR=3.383;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-13C>G||||||	GT:AD:DP:GQ:PL	0/1:32,5:37:52:52,0,912	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79656	.	G	A	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=37;Dels=0.00;ExcessHet=3.0103;FS=11.720;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=6.018;QD=24.07;ReadPosRankSum=-0.779;SOR=0.035;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-22C>T||||||	GT:AD:DP:GQ:PL	0/1:5,32:37:80:919,0,80	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79667	.	T	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DP=36;Dels=0.00;ExcessHet=3.0103;FS=12.080;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.81;MQ0=0;MQRankSum=-5.858;QD=1.41;ReadPosRankSum=-0.137;SOR=3.493;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-33A>C||||||	GT:AD:DP:GQ:PL	0/1:31,5:36:79:79,0,897	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79683	.	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.718;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-5.318;QD=1.19;ReadPosRankSum=-2.076;SOR=2.712;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-49A>G||||||	GT:AD:DP:GQ:PL	0/1:26,4:30:64:64,0,776	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79761	.	G	T	892.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.081;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=1;MQRankSum=6.058;QD=22.89;ReadPosRankSum=3.620;SOR=0.016;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-127C>A||||||	GT:AD:DP:GQ:PL	1/1:9,30:39:18:921,18,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79779	.	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=2;QD=26.18;SOR=1.659;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-145T>C||||||	GT:AD:DP:GQ:PL	1/1:0,49:49:96:1311,96,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79780	.	T	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;DP=49;Dels=0.00;ExcessHet=3.0103;FS=11.720;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=50.24;MQ0=2;MQRankSum=-6.636;QD=0.75;ReadPosRankSum=-1.490;SOR=5.079;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-146A>T||||||	GT:AD:DP:GQ:PL	0/1:33,16:49:65:65,0,1029	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79789	.	T	C	1177.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=2;QD=25.06;SOR=1.714;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-155A>G||||||	GT:AD:DP:GQ:PL	1/1:0,47:47:90:1206,90,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79806	.	G	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.251;HaplotypeScore=3.3286;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=5;MQRankSum=-6.746;QD=1.00;ReadPosRankSum=0.671;SOR=1.802;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-172C>G||||||	GT:AD:DP:GQ:PL	0/1:34,22:56:84:84,0,1026	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79816	.	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.185;HaplotypeScore=3.4960;MLEAC=1;MLEAF=0.500;MQ=44.81;MQ0=5;MQRankSum=-7.114;QD=2.61;ReadPosRankSum=-0.821;SOR=1.519;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-182C>T||||||	GT:AD:DP:GQ:PL	0/1:34,31:65:99:198,0,1065	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	79915	.	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8315;MLEAC=1;MLEAF=0.500;MQ=47.40;MQ0=2;MQRankSum=-7.306;QD=4.32;ReadPosRankSum=2.153;SOR=1.201;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-281C>T||||||	GT:AD:DP:GQ:PL	0/1:35,33:68:99:322,0,1042	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80110	.	T	C	722.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=30.12;SOR=0.859;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-476A>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:54:751,54,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80304	.	T	C	687.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=29.90;SOR=0.776;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-670A>G||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:716,51,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80351	.	G	C	794.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.44;SOR=0.765;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-717C>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:60:823,60,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80591	.	C	T	960.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=28.26;SOR=0.811;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-957G>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:35:72:989,72,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80638	.	T	C	924.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.89;SOR=0.760;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1004A>G||||||	GT:AD:DP:GQ:PL	1/1:0,29:30:69:953,69,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80640	.	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.63;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1006C>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1037,75,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80772	.	G	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DP=75;Dels=0.00;ExcessHet=3.0103;FS=17.682;HaplotypeScore=4.8433;MLEAC=1;MLEAF=0.500;MQ=41.23;MQ0=2;MQRankSum=-7.404;QD=2.41;ReadPosRankSum=-3.076;SOR=6.932;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1138C>G||||||	GT:AD:DP:GQ:PL	0/1:34,41:75:99:209,0,1021	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80782	.	T	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DP=94;Dels=0.00;ExcessHet=3.0103;FS=37.090;HaplotypeScore=8.4359;MLEAC=1;MLEAF=0.500;MQ=36.06;MQ0=2;MQRankSum=-7.779;QD=5.75;ReadPosRankSum=-4.814;SOR=7.898;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1148A>T||||||	GT:AD:DP:GQ:PL	0/1:29,64:94:99:563,0,858	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80787	.	A	G	1557.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.961;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5980;MLEAC=2;MLEAF=1.00;MQ=36.06;MQ0=2;MQRankSum=0.612;QD=16.57;ReadPosRankSum=0.705;SOR=1.547;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1153T>C||||||	GT:AD:DP:GQ:PL	1/1:6,88:94:60:1586,60,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80805	.	T	C	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.052;DP=163;Dels=0.00;ExcessHet=3.0103;FS=65.735;HaplotypeScore=4.5461;MLEAC=1;MLEAF=0.500;MQ=31.95;MQ0=7;MQRankSum=-9.060;QD=7.38;ReadPosRankSum=-1.491;SOR=9.048;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1171A>G||||||	GT:AD:DP:GQ:PL	0/1:35,127:163:99:1223,0,1072	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80826	.	T	C	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;DP=249;Dels=0.00;ExcessHet=3.0103;FS=89.809;HaplotypeScore=4.8117;MLEAC=1;MLEAF=0.500;MQ=28.07;MQ0=36;MQRankSum=-9.409;QD=7.16;ReadPosRankSum=1.614;SOR=9.743;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1192A>G||||||	GT:AD:DP:GQ:PL	0/1:40,209:249:99:1810,0,978	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80858	.	C	T	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=250;Dels=0.00;ExcessHet=3.0103;FS=48.230;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=39;MQRankSum=7.937;QD=1.34;ReadPosRankSum=1.289;SOR=0.010;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1224G>A||||||	GT:AD:DP:GQ:PL	0/1:227,23:250:99:362,0,3115	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80869	.	A	G	3569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;DP=250;Dels=0.00;ExcessHet=3.0103;FS=58.335;HaplotypeScore=3.6417;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=19;MQRankSum=-8.270;QD=14.28;ReadPosRankSum=-0.076;SOR=4.977;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1235T>C||||||	GT:AD:DP:GQ:PL	0/1:25,225:250:99:3598,0,422	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80894	.	G	A	3125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=250;Dels=0.00;ExcessHet=3.0103;FS=17.676;HaplotypeScore=9.6683;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=31;MQRankSum=-6.570;QD=12.55;ReadPosRankSum=-1.240;SOR=2.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1260C>T||||||	GT:AD:DP:GQ:PL	0/1:19,230:250:99:3154,0,226	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	80929	.	T	C	3525.77	.	AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.5228;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=54;QD=14.22;SOR=1.514;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1295A>G||||||	GT:AD:DP:GQ:PL	1/1:0,248:250:99:3554,339,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81032	.	A	G	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=204;Dels=0.00;ExcessHet=3.0103;FS=29.023;HaplotypeScore=37.7651;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=50;MQRankSum=-7.905;QD=10.00;ReadPosRankSum=-0.448;SOR=4.091;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1398T>C||||||	GT:AD:DP:GQ:PL	0/1:28,173:204:99:2038,0,644	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81071	.	T	A	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DP=150;Dels=0.00;ExcessHet=3.0103;FS=55.748;HaplotypeScore=17.3049;MLEAC=1;MLEAF=0.500;MQ=32.37;MQ0=36;MQRankSum=-8.080;QD=9.31;ReadPosRankSum=-3.154;SOR=8.497;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1437A>T||||||	GT:AD:DP:GQ:PL	0/1:29,120:150:99:1416,0,713	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81086	.	T	C	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DP=85;Dels=0.00;ExcessHet=3.0103;FS=45.259;HaplotypeScore=11.0324;MLEAC=1;MLEAF=0.500;MQ=41.46;MQ0=8;MQRankSum=-7.506;QD=11.01;ReadPosRankSum=-2.204;SOR=7.092;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.88-1452A>G||||||	GT:AD:DP:GQ:PL	0/1:29,55:85:99:953,0,853	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81122	.	T	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;DP=31;Dels=0.00;ExcessHet=3.0103;FS=10.726;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.64;MQ0=0;MQRankSum=-4.793;QD=0.36;ReadPosRankSum=-3.358;SOR=3.599;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+1419A>G||||||	GT:AD:DP:GQ:PL	0/1:26,5:31:39:39,0,715	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81288	.	A	AT	511.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.10;RPA=7,8;RU=T;SOR=2.179;STR;ANN=AT|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+1252_87+1253insA||||||	GT:AD:DP:GQ:PL	1/1:0,17:18:51:549,51,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81298	.	T	C	550.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.03;SOR=2.448;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+1243A>G||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:42:579,42,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81303	.	T	C	541.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.86;SOR=2.584;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+1238A>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:42:570,42,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81316	.	G	A	469.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.36;SOR=2.049;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+1225C>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:498,36,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81491	.	A	G	139.03	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.81;SOR=1.981;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+1050T>C||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:12:167,12,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81511	.	G	A	185.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+1030C>T||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:214,15,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81755	.	G	GA	645.7	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.307;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=0;MQRankSum=-1.571;QD=30.14;ReadPosRankSum=1.340;SOR=2.833;ANN=GA|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+785_87+786insT||||||	GT:AD:DP:GQ:PL	1/1:1,16:17:6:682,6,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81765	.	T	C	896.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.4800;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=3;QD=20.86;SOR=3.611;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+776A>G||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:75:925,75,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81795	.	T	C	1381.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.944;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=3;MQRankSum=-2.444;QD=20.03;ReadPosRankSum=0.805;SOR=1.329;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+746A>G||||||	GT:AD:DP:GQ:PL	1/1:2,67:69:45:1410,45,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81802	.	T	A	1476.1	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.320;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=4;MQRankSum=-3.001;QD=19.17;ReadPosRankSum=1.223;SOR=0.827;ANN=A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+739A>T||||||	GT:AD:DP:GQ:PL	1/1:3,74:78:11:1504,11,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81827	.	A	G	2147.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.507;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=37.30;MQ0=4;MQRankSum=-3.760;QD=19.01;ReadPosRankSum=0.377;SOR=0.618;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+714T>C||||||	GT:AD:DP:GQ:PL	1/1:5,108:113:15:2176,15,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81835	.	A	G	2337.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.524;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3260;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=4;MQRankSum=-3.763;QD=19.32;ReadPosRankSum=0.236;SOR=0.596;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+706T>C||||||	GT:AD:DP:GQ:PL	1/1:5,116:121:30:2366,30,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81840	.	A	G	2410.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.211;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=4;MQRankSum=-3.544;QD=18.83;ReadPosRankSum=-0.248;SOR=0.476;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+701T>C||||||	GT:AD:DP:GQ:PL	1/1:5,123:128:35:2439,35,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81854	.	T	G	2762.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.154;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2292;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=4;MQRankSum=-3.130;QD=18.42;ReadPosRankSum=-1.383;SOR=0.524;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+687A>C||||||	GT:AD:DP:GQ:PL	1/1:7,143:150:55:2791,55,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81897	.	A	G	4887.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.195;DP=210;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.0719;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=2;MQRankSum=-2.408;QD=23.28;ReadPosRankSum=0.054;SOR=1.274;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+644T>C||||||	GT:AD:DP:GQ:PL	1/1:12,198:210:99:4916,178,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81944	.	T	C	6946.77	.	AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.3082;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=28.01;SOR=1.274;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+597A>G||||||	GT:AD:DP:GQ:PL	1/1:0,248:250:99:6975,527,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81954	.	T	G	7091.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.687;DP=249;Dels=0.00;ExcessHet=3.0103;FS=3.170;HaplotypeScore=20.3839;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-2.655;QD=28.48;ReadPosRankSum=-0.026;SOR=1.375;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+587A>C||||||	GT:AD:DP:GQ:PL	1/1:9,240:249:99:7120,319,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	81971	.	A	T	6227.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.465;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.8853;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-2.315;QD=25.01;ReadPosRankSum=-1.452;SOR=0.737;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+570T>A||||||	GT:AD:DP:GQ:PL	1/1:15,234:250:99:6256,223,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82003	.	A	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.114;DP=250;Dels=0.00;ExcessHet=3.0103;FS=4.835;HaplotypeScore=224.7046;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=2.094;QD=0.99;ReadPosRankSum=-7.450;SOR=1.216;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+538T>C||||||	GT:AD:DP:GQ:PL	0/1:218,32:250:99:275,0,6968	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82003	.	A	AAAAG	13104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;DP=250;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=-2.336;QD=20.39;ReadPosRankSum=0.575;SOR=0.958;ANN=AAAAG|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+537_87+538insCTTT||||||	GT:AD:DP:GQ:PL	0/1:12,232:249:55:13142,0,55	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82055	.	G	GA	9233.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.976;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=3.838;QD=32.12;RPA=3,4;RU=A;ReadPosRankSum=0.790;SOR=0.388;STR;ANN=GA|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+485_87+486insT||||||	GT:AD:DP:GQ:PL	1/1:1,238:250:99:9271,703,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82151	.	T	G	7186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DP=245;Dels=0.00;ExcessHet=3.0103;FS=18.503;HaplotypeScore=18.9517;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=2;MQRankSum=-1.170;QD=29.33;ReadPosRankSum=-0.601;SOR=2.089;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+390A>C||||||	GT:AD:DP:GQ:PL	0/1:18,227:245:37:7215,0,37	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82181	.	A	C	6483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=241;Dels=0.00;ExcessHet=3.0103;FS=15.588;HaplotypeScore=10.0289;MLEAC=1;MLEAF=0.500;MQ=55.55;MQ0=2;MQRankSum=-2.587;QD=26.90;ReadPosRankSum=2.462;SOR=2.256;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+360T>G||||||	GT:AD:DP:GQ:PL	0/1:22,219:241:99:6512,0,178	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82217	.	T	C	5787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DP=214;Dels=0.00;ExcessHet=3.0103;FS=24.155;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.14;MQ0=0;MQRankSum=-3.077;QD=27.05;ReadPosRankSum=2.477;SOR=2.814;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+324A>G||||||	GT:AD:DP:GQ:PL	0/1:24,190:214:99:5816,0,307	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82224	.	C	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DP=208;Dels=0.00;ExcessHet=3.0103;FS=23.574;HaplotypeScore=5.4115;MLEAC=1;MLEAF=0.500;MQ=54.99;MQ0=0;MQRankSum=3.145;QD=1.60;ReadPosRankSum=-1.146;SOR=0.057;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+317G>A||||||	GT:AD:DP:GQ:PL	0/1:184,24:208:99:361,0,5625	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82237	.	T	C	5322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DP=202;Dels=0.00;ExcessHet=3.0103;FS=35.469;HaplotypeScore=8.9913;MLEAC=1;MLEAF=0.500;MQ=54.84;MQ0=0;MQRankSum=-3.431;QD=26.35;ReadPosRankSum=-0.260;SOR=3.328;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+304A>G||||||	GT:AD:DP:GQ:PL	0/1:27,175:202:99:5351,0,462	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82271	.	A	G	3373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DP=138;Dels=0.00;ExcessHet=3.0103;FS=58.160;HaplotypeScore=5.4958;MLEAC=1;MLEAF=0.500;MQ=52.96;MQ0=0;MQRankSum=-4.897;QD=24.45;ReadPosRankSum=-2.860;SOR=5.109;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+270T>C||||||	GT:AD:DP:GQ:PL	0/1:32,106:138:99:3402,0,656	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82293	.	T	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DP=57;Dels=0.00;ExcessHet=3.0103;FS=27.815;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=-7.175;QD=7.45;ReadPosRankSum=-3.436;SOR=6.136;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+248A>G||||||	GT:AD:DP:GQ:PL	0/1:34,23:57:99:453,0,1002	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82297	.	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DP=57;Dels=0.00;ExcessHet=3.0103;FS=31.473;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=-7.175;QD=7.86;ReadPosRankSum=-4.144;SOR=6.136;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+244A>G||||||	GT:AD:DP:GQ:PL	0/1:34,23:57:99:476,0,1030	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82324	.	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.96;SOR=0.818;ANN=G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+217T>C||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1051,75,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82360	.	A	T	1106.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.55;SOR=0.941;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+181T>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:35:81:1135,81,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82431	.	T	C	847.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.073;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=5.173;QD=25.69;ReadPosRankSum=1.962;SOR=0.760;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+110A>G||||||	GT:AD:DP:GQ:PL	1/1:4,29:33:24:876,24,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82434	.	T	C	803.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.212;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=5.173;QD=24.36;ReadPosRankSum=1.740;SOR=0.760;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+107A>G||||||	GT:AD:DP:GQ:PL	1/1:4,29:33:21:832,21,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82454	.	C	T	860.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=29.68;SOR=0.760;ANN=T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+87G>A||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:63:889,63,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82463	.	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=31.70;SOR=0.811;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+78A>G||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1106,81,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82523	.	CT	C	1091.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=34.12;RPA=7,6;RU=T;SOR=0.818;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+17delA||||||	GT:AD:DP:GQ:PL	1/1:0,32:34:96:1129,96,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82537	.	T	TC	1342.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=25.75;RPA=2,3;RU=C;SOR=0.941;STR;ANN=TC|splice_region_variant&intron_variant|LOW|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/1|c.87+3_87+4insG||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1380,102,0	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82616	.	C	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DP=42;Dels=0.00;ExcessHet=3.0103;FS=46.492;HaplotypeScore=2.6961;MLEAC=1;MLEAF=0.500;MQ=50.61;MQ0=0;MQRankSum=6.147;QD=17.02;ReadPosRankSum=4.552;SOR=1.731;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/2|c.12G>C|p.Glu4Asp|12/222|12/222|4/73||	GT:AD:DP:GQ:PL	0/1:17,25:42:99:743,0,375	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	82624	.	A	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;DP=44;Dels=0.00;ExcessHet=3.0103;FS=26.576;HaplotypeScore=5.3166;MLEAC=1;MLEAF=0.500;MQ=49.95;MQ0=0;MQRankSum=-6.216;QD=7.24;ReadPosRankSum=-3.450;SOR=3.590;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_79500_79634|GENE_EXON_scaffold1149_cov63_79500_79634|transcript|Soaet10008876|protein_coding|1/2|c.4T>C|p.Ser2Pro|4/222|4/222|2/73||	GT:AD:DP:GQ:PL	0/1:25,19:44:99:347,0,765	scaffold1149_cov63	GLEAN	mRNA	79500	82627	1.00	-	.	ID=Soaet10008876
scaffold1149_cov63	89448	.	C	A	901.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.21;SOR=1.609;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding|1/1|c.39+6G>T||||||,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.*3037G>T|||||3037|	GT:AD:DP:GQ:PL	1/1:0,28:28:66:930,66,0	scaffold1149_cov63	GLEAN	mRNA	89310	89492	0.50	-	.	ID=Soaet10008879
scaffold1149_cov63	89450	.	T	G	911.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.56;SOR=1.609;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding|1/1|c.39+4A>C||||||,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.*3035A>C|||||3035|	GT:AD:DP:GQ:PL	1/1:0,28:28:66:940,66,0	scaffold1149_cov63	GLEAN	mRNA	89310	89492	0.50	-	.	ID=Soaet10008879
scaffold1149_cov63	89456	.	G	A	859.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.71;SOR=1.609;ANN=A|missense_variant&splice_region_variant|MODERATE|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding|1/2|c.37C>T|p.Arg13Trp|37/171|37/171|13/56||,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.*3029C>T|||||3029|	GT:AD:DP:GQ:PL	1/1:0,28:28:63:888,63,0	scaffold1149_cov63	GLEAN	mRNA	89310	89492	0.50	-	.	ID=Soaet10008879
scaffold1149_cov63	89469	.	C	T	871.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.53;SOR=1.697;ANN=T|synonymous_variant|LOW|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding|1/2|c.24G>A|p.Lys8Lys|24/171|24/171|8/56||,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.*3016G>A|||||3016|	GT:AD:DP:GQ:PL	1/1:0,26:26:63:900,63,0	scaffold1149_cov63	GLEAN	mRNA	89310	89492	0.50	-	.	ID=Soaet10008879
scaffold1149_cov63	92687	.	G	T	590.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.75;SOR=1.739;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3195C>A|||||3195|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-3251G>T|||||3251|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2782C>A|||||2782|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|3/3|c.235-134C>A||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:45:619,45,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	92762	.	A	G	828.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SOR=0.892;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3270T>C|||||3270|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-3176A>G|||||3176|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2707T>C|||||2707|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|3/3|c.235-209T>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:60:857,60,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	92817	.	G	A	807.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.85;SOR=1.382;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3325C>T|||||3325|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-3121G>A|||||3121|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2652C>T|||||2652|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|3/3|c.234+196C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:60:836,60,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	92869	.	G	T	582.1	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=4.588;QD=29.10;ReadPosRankSum=1.739;SOR=1.061;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3377C>A|||||3377|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-3069G>T|||||3069|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2600C>A|||||2600|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|3/3|c.234+144C>A||||||	GT:AD:DP:GQ:PL	1/1:1,19:20:11:610,11,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93136	.	AC	A	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=24;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-3.284;QD=8.90;RPA=7,6;RU=C;ReadPosRankSum=-3.897;SOR=2.303;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3645delG|||||3645|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2801delC|||||2801|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2332delG|||||2332|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/3|c.121-11delG||||||	GT:AD:DP:GQ:PL	0/1:13,9:24:99:233,0,228	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93149	.	C	T	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.661;DP=78;Dels=0.00;ExcessHet=3.0103;FS=50.151;HaplotypeScore=9.0315;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=0;MQRankSum=-4.447;QD=23.59;ReadPosRankSum=-2.358;SOR=3.828;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3657G>A|||||3657|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2789C>T|||||2789|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2320G>A|||||2320|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/3|c.121-23G>A||||||	GT:AD:DP:GQ:PL	0/1:10,68:78:99:1868,0,153	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93174	.	G	T	4156.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;DP=162;Dels=0.00;ExcessHet=3.0103;FS=59.244;HaplotypeScore=10.8230;MLEAC=1;MLEAF=0.500;MQ=44.65;MQ0=0;MQRankSum=-4.500;QD=25.66;ReadPosRankSum=-3.364;SOR=3.481;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3682C>A|||||3682|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2764G>T|||||2764|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2295C>A|||||2295|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/3|c.121-48C>A||||||	GT:AD:DP:GQ:PL	0/1:10,152:162:14:4185,0,14	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93220	.	T	G	5889.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;DP=249;Dels=0.00;ExcessHet=3.0103;FS=5.664;HaplotypeScore=9.0753;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=7;MQRankSum=-4.207;QD=23.75;ReadPosRankSum=1.072;SOR=1.778;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3728A>C|||||3728|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2718T>G|||||2718|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2249A>C|||||2249|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/3|c.120+85A>C||||||	GT:AD:DP:GQ:PL	1/1:11,237:249:94:5918,94,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93265	.	G	A	5786.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=248;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=9.2412;MLEAC=1;MLEAF=0.500;MQ=42.21;MQ0=8;MQRankSum=-5.244;QD=23.43;ReadPosRankSum=0.406;SOR=0.462;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3773C>T|||||3773|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2673G>A|||||2673|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2204C>T|||||2204|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/3|c.120+40C>T||||||	GT:AD:DP:GQ:PL	0/1:13,234:247:23:5815,0,23	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93290	.	A	G	5411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;DP=250;Dels=0.00;ExcessHet=3.0103;FS=3.612;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=40.54;MQ0=6;MQRankSum=-5.569;QD=21.65;ReadPosRankSum=-0.860;SOR=0.322;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3798T>C|||||3798|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2648A>G|||||2648|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2179T>C|||||2179|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/3|c.120+15T>C||||||	GT:AD:DP:GQ:PL	0/1:16,234:250:56:5440,0,56	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93305	.	A	G	6037.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.441;DP=250;Dels=0.00;ExcessHet=3.0103;FS=8.343;HaplotypeScore=7.9885;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=4;MQRankSum=-5.629;QD=24.15;ReadPosRankSum=-0.699;SOR=0.174;ANN=G|splice_region_variant&synonymous_variant|LOW|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/4|c.120T>C|p.His40His|120/303|120/303|40/100||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3813T>C|||||3813|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2633A>G|||||2633|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2164T>C|||||2164|	GT:AD:DP:GQ:PL	1/1:12,238:250:99:6066,103,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93314	.	T	C	6174.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.865;DP=248;Dels=0.00;ExcessHet=3.0103;FS=5.148;HaplotypeScore=11.7791;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=4;MQRankSum=-4.847;QD=24.90;ReadPosRankSum=-0.431;SOR=0.252;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|2/4|c.111A>G|p.Ile37Met|111/303|111/303|37/100||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3822A>G|||||3822|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2624T>C|||||2624|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2155A>G|||||2155|	GT:AD:DP:GQ:PL	1/1:11,237:248:99:6203,217,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93323	.	A	G	6365.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DP=245;Dels=0.00;ExcessHet=3.0103;FS=4.465;HaplotypeScore=13.4837;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=4;MQRankSum=-5.053;QD=25.98;ReadPosRankSum=0.660;SOR=0.536;ANN=G|splice_acceptor_variant&intron_variant|HIGH|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-1T>C||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3831T>C|||||3831|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2615A>G|||||2615|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2146T>C|||||2146|;LOF=(EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|1|1.00)	GT:AD:DP:GQ:PL	1/1:11,234:245:99:6394,222,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93326	.	A	G	6529.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=250;Dels=0.00;ExcessHet=3.0103;FS=4.501;HaplotypeScore=12.5678;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=4;MQRankSum=-4.904;QD=26.12;ReadPosRankSum=0.776;SOR=0.597;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-4T>C||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3834T>C|||||3834|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2612A>G|||||2612|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2143T>C|||||2143|	GT:AD:DP:GQ:PL	1/1:11,239:250:99:6558,215,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93354	.	A	G	7263.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.077;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.8522;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=2;MQRankSum=-2.638;QD=29.29;ReadPosRankSum=0.834;SOR=1.252;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3862T>C|||||3862|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2584A>G|||||2584|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2115T>C|||||2115|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-32T>C||||||	GT:AD:DP:GQ:PL	1/1:8,240:249:99:7292,327,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93390	.	A	G	6649.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;DP=248;Dels=0.00;ExcessHet=3.0103;FS=2.596;HaplotypeScore=4.6632;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=2;MQRankSum=-3.838;QD=26.81;ReadPosRankSum=3.021;SOR=1.251;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3898T>C|||||3898|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2548A>G|||||2548|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2079T>C|||||2079|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-68T>C||||||	GT:AD:DP:GQ:PL	1/1:12,236:248:77:6678,77,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93415	.	C	T	5943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DP=229;Dels=0.00;ExcessHet=3.0103;FS=2.416;HaplotypeScore=10.0746;MLEAC=1;MLEAF=0.500;MQ=49.18;MQ0=2;MQRankSum=-4.130;QD=25.96;ReadPosRankSum=2.233;SOR=1.306;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3923G>A|||||3923|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2523C>T|||||2523|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2054G>A|||||2054|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-93G>A||||||	GT:AD:DP:GQ:PL	0/1:15,214:229:43:5972,0,43	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93451	.	A	C	5050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;DP=200;Dels=0.00;ExcessHet=3.0103;FS=1.018;HaplotypeScore=10.1103;MLEAC=1;MLEAF=0.500;MQ=50.19;MQ0=2;MQRankSum=-4.201;QD=25.51;ReadPosRankSum=-1.765;SOR=1.052;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3959T>G|||||3959|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2487A>C|||||2487|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*2018T>G|||||2018|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-129T>G||||||	GT:AD:DP:GQ:PL	0/1:19,179:200:99:5079,0,218	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93474	.	T	G	4830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DP=206;Dels=0.00;ExcessHet=3.0103;FS=2.185;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=48.70;MQ0=3;MQRankSum=-4.785;QD=23.45;ReadPosRankSum=-3.607;SOR=1.524;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3982A>C|||||3982|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2464T>G|||||2464|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1995A>C|||||1995|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-152A>C||||||	GT:AD:DP:GQ:PL	0/1:22,184:206:99:4859,0,266	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93485	.	G	T	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;DP=197;Dels=0.00;ExcessHet=3.0103;FS=5.345;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=47.10;MQ0=4;MQRankSum=5.160;QD=1.55;ReadPosRankSum=4.491;SOR=0.199;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-3993C>A|||||3993|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2453G>T|||||2453|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1984C>A|||||1984|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-163C>A||||||	GT:AD:DP:GQ:PL	0/1:175,22:197:99:334,0,4398	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93504	.	C	T	2149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=124;Dels=0.00;ExcessHet=3.0103;FS=26.917;HaplotypeScore=5.5195;MLEAC=1;MLEAF=0.500;MQ=39.43;MQ0=4;MQRankSum=-6.952;QD=17.34;ReadPosRankSum=-2.690;SOR=4.226;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4012G>A|||||4012|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2434C>T|||||2434|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1965G>A|||||1965|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.103-182G>A||||||	GT:AD:DP:GQ:PL	0/1:22,102:124:99:2178,0,383	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93543	.	T	G	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;DP=71;Dels=0.00;ExcessHet=3.0103;FS=24.321;HaplotypeScore=9.1072;MLEAC=1;MLEAF=0.500;MQ=38.76;MQ0=3;MQRankSum=-5.895;QD=17.79;ReadPosRankSum=2.017;SOR=6.365;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4051A>C|||||4051|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2395T>G|||||2395|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1926A>C|||||1926|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.102+191A>C||||||	GT:AD:DP:GQ:PL	0/1:14,55:71:99:1256,0,325	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93556	.	T	C	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;DP=72;Dels=0.00;ExcessHet=3.0103;FS=27.107;HaplotypeScore=8.3186;MLEAC=1;MLEAF=0.500;MQ=38.39;MQ0=3;MQRankSum=-5.756;QD=18.83;ReadPosRankSum=1.866;SOR=6.701;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4064A>G|||||4064|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2382T>C|||||2382|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1913A>G|||||1913|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.102+178A>G||||||	GT:AD:DP:GQ:PL	0/1:13,59:72:99:1384,0,307	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93601	.	T	C	1967.77	.	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=3;QD=27.33;SOR=4.438;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4109A>G|||||4109|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2337T>C|||||2337|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1868A>G|||||1868|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.102+133A>G||||||	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1996,159,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93681	.	C	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=13;Dels=0.00;ExcessHet=3.0103;FS=9.792;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=0;MQRankSum=-3.195;QD=7.44;ReadPosRankSum=-2.334;SOR=3.246;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4189G>T|||||4189|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2257C>A|||||2257|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1788G>T|||||1788|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.102+53G>T||||||	GT:AD:DP:GQ:PL	0/1:9,4:13:99:125,0,225	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93693	.	G	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=0;MQRankSum=-3.149;QD=1.36;ReadPosRankSum=-1.196;SOR=2.303;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4201C>A|||||4201|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2245G>T|||||2245|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1776C>A|||||1776|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.102+41C>A||||||	GT:AD:DP:GQ:PL	0/1:14,2:16:50:50,0,318	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93712	.	C	T	364.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SOR=0.976;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4220G>A|||||4220|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2226C>T|||||2226|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1757G>A|||||1757|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/3|c.102+22G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:27:393,27,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93795	.	G	T	614.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/4|c.41C>A|p.Thr14Asn|41/303|41/303|14/100||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4303C>A|||||4303|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2143G>T|||||2143|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1674C>A|||||1674|	GT:AD:DP:GQ:PL	1/1:0,23:23:45:643,45,0	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93824	.	T	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;DP=39;Dels=0.00;ExcessHet=3.0103;FS=11.419;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=52.95;MQ0=0;MQRankSum=-6.039;QD=3.17;ReadPosRankSum=-4.137;SOR=4.174;ANN=A|synonymous_variant|LOW|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/4|c.12A>T|p.Ser4Ser|12/303|12/303|4/100||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4332A>T|||||4332|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2114T>A|||||2114|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1645A>T|||||1645|	GT:AD:DP:GQ:PL	0/1:28,11:39:99:152,0,745	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	93829	.	T	C	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;DP=57;Dels=0.00;ExcessHet=3.0103;FS=35.487;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=50.76;MQ0=0;MQRankSum=-7.202;QD=10.36;ReadPosRankSum=-3.234;SOR=6.096;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding|1/4|c.7A>G|p.Ser3Gly|7/303|7/303|3/100||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_89310_89441|GENE_EXON_scaffold1149_cov63_89310_89441|transcript|Soaet10008879|protein_coding||c.-4337A>G|||||4337|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-2109T>C|||||2109|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.*1640A>G|||||1640|	GT:AD:DP:GQ:PL	0/1:33,24:57:99:619,0,769	scaffold1149_cov63	GLEAN	mRNA	92485	93835	0.46	-	.	ID=Soaet10008880
scaffold1149_cov63	95474	.	T	A	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=67;Dels=0.00;ExcessHet=3.0103;FS=32.724;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=1;MQRankSum=-6.469;QD=12.85;ReadPosRankSum=-0.608;SOR=3.293;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding|1/1|c.175A>T|p.Ile59Leu|175/180|175/180|59/59||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-1639A>T|||||1639|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-464T>A|||||464|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*4499A>T|||||4499|	GT:AD:DP:GQ:PL	0/1:25,42:67:99:889,0,608	scaffold1149_cov63	GLEAN	mRNA	95469	95648	0.97	-	.	ID=Soaet10008881
scaffold1149_cov63	95475	.	G	A	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=67;Dels=0.00;ExcessHet=3.0103;FS=35.200;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=1;MQRankSum=6.627;QD=9.94;ReadPosRankSum=0.420;SOR=0.954;ANN=A|synonymous_variant|LOW|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding|1/1|c.174C>T|p.Arg58Arg|174/180|174/180|58/59||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-1640C>T|||||1640|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-463G>A|||||463|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*4498C>T|||||4498|	GT:AD:DP:GQ:PL	0/1:43,24:67:99:694,0,931	scaffold1149_cov63	GLEAN	mRNA	95469	95648	0.97	-	.	ID=Soaet10008881
scaffold1149_cov63	95509	.	A	C	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=58;Dels=0.00;ExcessHet=3.0103;FS=40.567;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=48.76;MQ0=1;MQRankSum=-7.011;QD=10.10;ReadPosRankSum=-3.015;SOR=5.210;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding|1/1|c.140T>G|p.Val47Gly|140/180|140/180|47/59||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-1674T>G|||||1674|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-429A>C|||||429|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*4464T>G|||||4464|	GT:AD:DP:GQ:PL	0/1:30,28:58:99:614,0,756	scaffold1149_cov63	GLEAN	mRNA	95469	95648	0.97	-	.	ID=Soaet10008881
scaffold1149_cov63	95512	.	A	G	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;DP=51;Dels=0.00;ExcessHet=3.0103;FS=37.118;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=48.86;MQ0=1;MQRankSum=-6.563;QD=9.13;ReadPosRankSum=-3.393;SOR=4.801;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding|1/1|c.137T>C|p.Ile46Thr|137/180|137/180|46/59||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-1677T>C|||||1677|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-426A>G|||||426|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*4461T>C|||||4461|	GT:AD:DP:GQ:PL	0/1:28,23:51:99:494,0,727	scaffold1149_cov63	GLEAN	mRNA	95469	95648	0.97	-	.	ID=Soaet10008881
scaffold1149_cov63	95597	.	T	C	868.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding|1/1|c.52A>G|p.Thr18Ala|52/180|52/180|18/59||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-1762A>G|||||1762|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-341T>C|||||341|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*4376A>G|||||4376|	GT:AD:DP:GQ:PL	1/1:0,28:28:66:897,66,0	scaffold1149_cov63	GLEAN	mRNA	95469	95648	0.97	-	.	ID=Soaet10008881
scaffold1149_cov63	95636	.	T	A	776.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=29.88;SOR=1.697;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding|1/1|c.13A>T|p.Asn5Tyr|13/180|13/180|5/59||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-1801A>T|||||1801|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.-302T>A|||||302|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*4337A>T|||||4337|	GT:AD:DP:GQ:PL	1/1:0,26:26:57:805,57,0	scaffold1149_cov63	GLEAN	mRNA	95469	95648	0.97	-	.	ID=Soaet10008881
scaffold1149_cov63	95986	.	A	G	756.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.11;ReadPosRankSum=0.193;SOR=0.859;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2151T>C|||||2151|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-338T>C|||||338|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3987T>C|||||3987|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.38+11A>G||||||	GT:AD:DP:GQ:PL	1/1:2,24:26:18:785,18,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96345	.	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;DP=41;Dels=0.00;ExcessHet=3.0103;FS=14.675;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.12;MQ0=0;MQRankSum=-6.169;QD=3.82;ReadPosRankSum=-1.514;SOR=4.750;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2510A>G|||||2510|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-697A>G|||||697|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3628A>G|||||3628|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.38+370T>C||||||	GT:AD:DP:GQ:PL	0/1:28,13:41:99:185,0,771	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96365	.	T	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=58;Dels=0.00;ExcessHet=3.0103;FS=32.179;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=47.07;MQ0=0;MQRankSum=-7.098;QD=8.39;ReadPosRankSum=-1.466;SOR=6.056;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2530A>G|||||2530|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-717A>G|||||717|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3608A>G|||||3608|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.38+390T>C||||||	GT:AD:DP:GQ:PL	0/1:31,27:58:99:515,0,854	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96377	.	T	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DP=67;Dels=0.00;ExcessHet=3.0103;FS=45.658;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=44.71;MQ0=0;MQRankSum=-7.236;QD=13.49;ReadPosRankSum=-1.965;SOR=6.842;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2542A>C|||||2542|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-729A>C|||||729|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3596A>C|||||3596|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.38+402T>G||||||	GT:AD:DP:GQ:PL	0/1:28,39:67:99:932,0,750	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96378	.	T	C	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DP=67;Dels=0.00;ExcessHet=3.0103;FS=45.658;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=44.71;MQ0=0;MQRankSum=-7.236;QD=13.53;ReadPosRankSum=-1.838;SOR=6.842;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2543A>G|||||2543|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-730A>G|||||730|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3595A>G|||||3595|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.38+403T>C||||||	GT:AD:DP:GQ:PL	0/1:28,39:67:99:935,0,768	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96388	.	T	C	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;DP=80;Dels=0.00;ExcessHet=3.0103;FS=58.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=44.01;MQ0=0;MQRankSum=-7.640;QD=16.01;ReadPosRankSum=-1.122;SOR=7.515;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2553A>G|||||2553|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-740A>G|||||740|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3585A>G|||||3585|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-406T>C||||||	GT:AD:DP:GQ:PL	0/1:29,51:80:99:1309,0,695	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96393	.	G	A	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DP=89;Dels=0.00;ExcessHet=3.0103;FS=55.545;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=45.03;MQ0=0;MQRankSum=-7.874;QD=17.58;ReadPosRankSum=-0.934;SOR=6.520;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2558C>T|||||2558|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-745C>T|||||745|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3580C>T|||||3580|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-401G>A||||||	GT:AD:DP:GQ:PL	0/1:30,59:89:99:1593,0,630	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96394	.	G	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;DP=92;Dels=0.00;ExcessHet=3.0103;FS=60.442;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=45.14;MQ0=0;MQRankSum=7.816;QD=6.35;ReadPosRankSum=1.129;SOR=0.003;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2559C>A|||||2559|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-746C>A|||||746|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3579C>A|||||3579|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-400G>T||||||	GT:AD:DP:GQ:PL	0/1:62,30:92:99:612,0,1690	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96405	.	A	G	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;DP=110;Dels=0.00;ExcessHet=3.0103;FS=50.247;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=45.30;MQ0=0;MQRankSum=-8.047;QD=18.51;ReadPosRankSum=-0.867;SOR=4.145;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2570T>C|||||2570|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-757T>C|||||757|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3568T>C|||||3568|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-389A>G||||||	GT:AD:DP:GQ:PL	0/1:31,78:110:99:2046,0,661	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96478	.	T	G	3913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DP=243;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4076;MLEAC=1;MLEAF=0.500;MQ=46.65;MQ0=3;MQRankSum=-6.993;QD=16.17;ReadPosRankSum=1.739;SOR=0.654;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2643A>C|||||2643|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-830A>C|||||830|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3495A>C|||||3495|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-316T>G||||||	GT:AD:DP:GQ:PL	0/1:30,212:243:99:3942,0,665	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96492	.	T	A	3947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;DP=239;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=3;MQRankSum=-6.667;QD=16.52;ReadPosRankSum=1.321;SOR=0.729;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2657A>T|||||2657|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-844A>T|||||844|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3481A>T|||||3481|,A|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-302T>A||||||	GT:AD:DP:GQ:PL	0/1:27,212:239:99:3976,0,444	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96529	.	T	C	3762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DP=208;Dels=0.00;ExcessHet=3.0103;FS=1.646;HaplotypeScore=3.6636;MLEAC=1;MLEAF=0.500;MQ=48.51;MQ0=3;MQRankSum=-6.157;QD=18.09;ReadPosRankSum=3.225;SOR=1.183;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2694A>G|||||2694|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-881A>G|||||881|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3444A>G|||||3444|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-265T>C||||||	GT:AD:DP:GQ:PL	0/1:32,176:208:99:3791,0,625	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96535	.	C	T	3690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DP=200;Dels=0.00;ExcessHet=3.0103;FS=5.164;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=48.71;MQ0=3;MQRankSum=-6.106;QD=18.45;ReadPosRankSum=2.266;SOR=1.272;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2700G>A|||||2700|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-887G>A|||||887|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3438G>A|||||3438|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-259C>T||||||	GT:AD:DP:GQ:PL	0/1:30,170:200:99:3719,0,665	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96545	.	A	G	3549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DP=187;Dels=0.00;ExcessHet=3.0103;FS=12.123;HaplotypeScore=4.4956;MLEAC=1;MLEAF=0.500;MQ=49.08;MQ0=3;MQRankSum=-6.163;QD=18.98;ReadPosRankSum=1.498;SOR=1.735;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2710T>C|||||2710|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-897T>C|||||897|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3428T>C|||||3428|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-249A>G||||||	GT:AD:DP:GQ:PL	0/1:32,155:187:99:3578,0,618	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96549	.	T	C	3508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;DP=178;Dels=0.00;ExcessHet=3.0103;FS=19.653;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=49.00;MQ0=3;MQRankSum=-6.183;QD=19.71;ReadPosRankSum=1.345;SOR=2.011;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2714A>G|||||2714|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-901A>G|||||901|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3424A>G|||||3424|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-245T>C||||||	GT:AD:DP:GQ:PL	0/1:33,145:178:99:3537,0,642	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96583	.	A	T	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;DP=97;Dels=0.00;ExcessHet=3.0103;FS=81.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=3;MQRankSum=-7.188;QD=18.72;ReadPosRankSum=-3.839;SOR=5.484;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2748T>A|||||2748|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-935T>A|||||935|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3390T>A|||||3390|,T|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-211A>T||||||	GT:AD:DP:GQ:PL	0/1:30,67:97:99:1844,0,768	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96597	.	T	C	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DP=58;Dels=0.00;ExcessHet=3.0103;FS=59.079;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=49.16;MQ0=1;MQRankSum=-6.808;QD=14.48;ReadPosRankSum=-4.722;SOR=6.932;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2762A>G|||||2762|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-949A>G|||||949|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3376A>G|||||3376|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-197T>C||||||	GT:AD:DP:GQ:PL	0/1:26,32:58:99:868,0,712	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96729	.	A	G	892.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6551;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.76;SOR=0.976;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2894T>C|||||2894|,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1081T>C|||||1081|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3244T>C|||||3244|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-65A>G||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:66:921,66,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96732	.	T	C	904.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.836;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7389;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=5.661;QD=28.27;ReadPosRankSum=2.376;SOR=0.976;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2897A>G|||||2897|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1084A>G|||||1084|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3241A>G|||||3241|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|1/1|c.39-62T>C||||||	GT:AD:DP:GQ:PL	1/1:2,30:32:27:933,27,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96816	.	C	T	715.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=32.53;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.61C>T|p.His21Tyr|61/282|61/282|21/93||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2981G>A|||||2981|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1168G>A|||||1168|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3157G>A|||||3157|	GT:AD:DP:GQ:PL	1/1:0,22:22:54:744,54,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96828	.	G	A	666.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=31.75;SOR=1.230;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.73G>A|p.Gly25Ser|73/282|73/282|25/93||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-2993C>T|||||2993|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1180C>T|||||1180|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3145C>T|||||3145|	GT:AD:DP:GQ:PL	1/1:0,21:21:51:695,51,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96877	.	G	A	751.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.91;SOR=0.846;ANN=A|missense_variant|MODERATE|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.122G>A|p.Gly41Glu|122/282|122/282|41/93||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-3042C>T|||||3042|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1229C>T|||||1229|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3096C>T|||||3096|	GT:AD:DP:GQ:PL	1/1:0,26:26:57:780,57,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96905	.	T	C	787.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=29.18;SOR=0.765;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.150T>C|p.Asp50Asp|150/282|150/282|50/93||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-3070A>G|||||3070|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1257A>G|||||1257|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3068A>G|||||3068|	GT:AD:DP:GQ:PL	1/1:0,27:27:57:816,57,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96947	.	T	C	825.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.49;SOR=0.997;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.192T>C|p.Ser64Ser|192/282|192/282|64/93||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-3112A>G|||||3112|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1299A>G|||||1299|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*3026A>G|||||3026|	GT:AD:DP:GQ:PL	1/1:0,28:28:60:854,60,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96981	.	T	C	691.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.511;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.344;QD=30.08;ReadPosRankSum=0.981;SOR=0.499;ANN=C|synonymous_variant|LOW|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.226T>C|p.Leu76Leu|226/282|226/282|76/93||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-3146A>G|||||3146|,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1333A>G|||||1333|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*2992A>G|||||2992|	GT:AD:DP:GQ:PL	1/1:1,22:23:51:720,51,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	96982	.	T	A	691.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=31.44;SOR=0.693;ANN=A|stop_gained|HIGH|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.227T>A|p.Leu76*|227/282|227/282|76/93||,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-3147A>T|||||3147|,A|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1334A>T|||||1334|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*2991A>T|||||2991|	GT:AD:DP:GQ:PL	1/1:0,22:22:51:720,51,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	97002	.	C	T	899.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=29.99;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding|2/2|c.247C>T|p.Pro83Ser|247/282|247/282|83/93||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_92485_92553|GENE_EXON_scaffold1149_cov63_92485_92553|transcript|Soaet10008880|protein_coding||c.-3167G>A|||||3167|,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-1354G>A|||||1354|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding||c.*2971G>A|||||2971|	GT:AD:DP:GQ:PL	1/1:0,30:30:66:928,66,0	scaffold1149_cov63	GLEAN	mRNA	95938	97037	0.61	+	.	ID=Soaet10008882
scaffold1149_cov63	99981	.	C	G	712.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=1;QD=26.40;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|2/2|c.181G>C|p.Val61Leu|181/189|181/189|61/62||,G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4333G>C|||||4333|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*2944C>G|||||2944|	GT:AD:DP:GQ:PL	1/1:0,27:27:54:741,54,0	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1149_cov63	100030	.	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;DP=32;Dels=0.00;ExcessHet=3.0103;FS=7.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.16;MQ0=1;MQRankSum=-4.730;QD=6.46;ReadPosRankSum=2.959;SOR=2.283;ANN=T|synonymous_variant|LOW|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|2/2|c.132G>A|p.Thr44Thr|132/189|132/189|44/62||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4382G>A|||||4382|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*2993C>T|||||2993|	GT:AD:DP:GQ:PL	0/1:17,15:32:99:235,0,495	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1149_cov63	100056	.	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DP=32;Dels=0.00;ExcessHet=3.0103;FS=8.607;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=47.31;MQ0=1;MQRankSum=-5.155;QD=6.24;ReadPosRankSum=3.435;SOR=2.283;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|2/2|c.106A>G|p.Arg36Gly|106/189|106/189|36/62||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4408A>G|||||4408|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*3019T>C|||||3019|	GT:AD:DP:GQ:PL	0/1:17,15:32:99:228,0,400	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1149_cov63	100078	.	A	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DP=36;Dels=0.00;ExcessHet=3.0103;FS=11.723;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=48.20;MQ0=1;MQRankSum=-5.245;QD=3.39;ReadPosRankSum=2.021;SOR=2.824;ANN=C|splice_region_variant&synonymous_variant|LOW|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|2/2|c.84T>G|p.Val28Val|84/189|84/189|28/62||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4430T>G|||||4430|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*3041A>C|||||3041|	GT:AD:DP:GQ:PL	0/1:21,14:36:99:147,0,644	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1149_cov63	100083	.	C	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;DP=36;Dels=0.00;ExcessHet=3.0103;FS=10.392;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=48.20;MQ0=1;MQRankSum=-5.289;QD=4.13;ReadPosRankSum=1.079;SOR=2.261;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|1/1|c.83-4G>A||||||,T|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4435G>A|||||4435|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*3046C>T|||||3046|	GT:AD:DP:GQ:PL	0/1:21,15:36:99:177,0,609	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1149_cov63	100113	.	T	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;DP=39;Dels=0.00;ExcessHet=3.0103;FS=13.623;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=50.36;MQ0=1;MQRankSum=-5.589;QD=4.66;ReadPosRankSum=-2.494;SOR=2.084;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4465A>G|||||4465|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*3076T>C|||||3076|,C|intron_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|1/1|c.83-34A>G||||||	GT:AD:DP:GQ:PL	0/1:25,14:39:99:210,0,634	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1149_cov63	100145	.	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;DP=40;Dels=0.00;ExcessHet=3.0103;FS=13.424;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=53.58;MQ0=0;MQRankSum=-5.778;QD=1.74;ReadPosRankSum=-1.876;SOR=3.243;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4497T>C|||||4497|,G|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*3108A>G|||||3108|,G|intron_variant|MODIFIER|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|1/1|c.82+18T>C||||||	GT:AD:DP:GQ:PL	0/1:30,10:40:98:98,0,994	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1149_cov63	100213	.	G	C	709.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.260;HaplotypeScore=15.9356;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=4.545;QD=24.47;ReadPosRankSum=-0.602;SOR=1.075;ANN=C|missense_variant|MODERATE|EXON_scaffold1149_cov63_99973_100079|GENE_EXON_scaffold1149_cov63_99973_100079|transcript|Soaet10008883|protein_coding|1/2|c.32C>G|p.Thr11Arg|32/189|32/189|11/62||,C|upstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95469_95648|GENE_EXON_scaffold1149_cov63_95469_95648|transcript|Soaet10008881|protein_coding||c.-4565C>G|||||4565|,C|downstream_gene_variant|MODIFIER|EXON_scaffold1149_cov63_95938_95975|GENE_EXON_scaffold1149_cov63_95938_95975|transcript|Soaet10008882|protein_coding||c.*3176G>C|||||3176|	GT:AD:DP:GQ:PL	1/1:4,25:29:29:738,29,0	scaffold1149_cov63	GLEAN	mRNA	99973	100244	1.00	-	.	ID=Soaet10008883
scaffold1197_cov63	75270	.	G	A	515.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SOR=0.941;ANN=A|synonymous_variant|LOW|EXON_scaffold1197_cov63_75220_75290|GENE_EXON_scaffold1197_cov63_75220_75290|transcript|Soaet10009179|protein_coding|1/6|c.51G>A|p.Ala17Ala|51/678|51/678|17/225||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:544,39,0	scaffold1197_cov63	GLEAN	mRNA	75220	76647	0.78	+	.	ID=Soaet10009179
scaffold1197_cov63	76072	.	G	A	590.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.75;SOR=1.371;ANN=A|intron_variant|MODIFIER|EXON_scaffold1197_cov63_75220_75290|GENE_EXON_scaffold1197_cov63_75220_75290|transcript|Soaet10009179|protein_coding|4/5|c.295-97G>A||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:45:619,45,0	scaffold1197_cov63	GLEAN	mRNA	75220	76647	0.78	+	.	ID=Soaet10009179
scaffold1197_cov63	76286	.	G	A	899.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=0.760;ANN=A|intron_variant|MODIFIER|EXON_scaffold1197_cov63_75220_75290|GENE_EXON_scaffold1197_cov63_75220_75290|transcript|Soaet10009179|protein_coding|5/5|c.375+37G>A||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:69:928,69,0	scaffold1197_cov63	GLEAN	mRNA	75220	76647	0.78	+	.	ID=Soaet10009179
scaffold1197_cov63	76507	.	G	C	1114.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.78;SOR=0.752;ANN=C|missense_variant|MODERATE|EXON_scaffold1197_cov63_75220_75290|GENE_EXON_scaffold1197_cov63_75220_75290|transcript|Soaet10009179|protein_coding|6/6|c.538G>C|p.Val180Leu|538/678|538/678|180/225||	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1143,81,0	scaffold1197_cov63	GLEAN	mRNA	75220	76647	0.78	+	.	ID=Soaet10009179
scaffold1197_cov63	82718	.	A	AC	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.40;ReadPosRankSum=1.064;SOR=0.859;ANN=AC|frameshift_variant|HIGH|EXON_scaffold1197_cov63_82400_82786|GENE_EXON_scaffold1197_cov63_82400_82786|transcript|Soaet10009180|protein_coding|1/1|c.319_320insC|p.Arg107fs|320/387|320/387|107/128||,AC|upstream_gene_variant|MODIFIER|EXON_scaffold1197_cov63_83328_83660|GENE_EXON_scaffold1197_cov63_83328_83660|transcript|Soaet10009181|protein_coding||c.-610_-609insC|||||609|;LOF=(EXON_scaffold1197_cov63_82400_82786|GENE_EXON_scaffold1197_cov63_82400_82786|1|1.00)	GT:AD:DP:GQ:PL	0/1:14,18:32:99:722,0,524	scaffold1197_cov63	GLEAN	mRNA	82400	82786	0.97	+	.	ID=Soaet10009180
scaffold1197_cov63	199795	.	C	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=54;Dels=0.00;ExcessHet=3.0103;FS=8.647;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.60;MQ0=0;MQRankSum=-5.669;QD=7.79;ReadPosRankSum=0.857;SOR=2.089;ANN=A|missense_variant|MODERATE|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.283G>T|p.Gly95Cys|283/288|283/288|95/95||	GT:AD:DP:GQ:PL	0/1:37,17:54:99:449,0,1026	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1197_cov63	199798	.	G	A	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;DP=56;Dels=0.00;ExcessHet=3.0103;FS=6.096;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.72;MQ0=0;MQRankSum=-5.562;QD=7.78;ReadPosRankSum=1.000;SOR=1.697;ANN=A|missense_variant|MODERATE|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.280C>T|p.His94Tyr|280/288|280/288|94/95||	GT:AD:DP:GQ:PL	0/1:38,18:56:99:464,0,967	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1197_cov63	199802	.	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DP=57;Dels=0.00;ExcessHet=3.0103;FS=13.741;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.68;MQ0=0;MQRankSum=-5.397;QD=7.76;ReadPosRankSum=0.479;SOR=2.515;ANN=T|synonymous_variant|LOW|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.276G>A|p.Gln92Gln|276/288|276/288|92/95||	GT:AD:DP:GQ:PL	0/1:36,20:57:99:463,0,972	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1197_cov63	199809	.	T	C	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;DP=60;Dels=0.00;ExcessHet=3.0103;FS=7.263;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-4.946;QD=10.53;ReadPosRankSum=0.517;SOR=1.589;ANN=C|missense_variant|MODERATE|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.269A>G|p.Lys90Arg|269/288|269/288|90/95||	GT:AD:DP:GQ:PL	0/1:35,25:60:99:660,0,880	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1197_cov63	199822	.	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;DP=62;Dels=0.00;ExcessHet=3.0103;FS=5.094;HaplotypeScore=9.1587;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=0;MQRankSum=-4.742;QD=10.42;ReadPosRankSum=1.342;SOR=1.274;ANN=C|missense_variant|MODERATE|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.256A>G|p.Lys86Glu|256/288|256/288|86/95||	GT:AD:DP:GQ:PL	0/1:35,27:62:99:674,0,900	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1197_cov63	199897	.	C	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.092;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=53.49;MQ0=0;MQRankSum=-2.522;QD=3.88;ReadPosRankSum=0.908;SOR=0.481;ANN=T|missense_variant|MODERATE|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.181G>A|p.Asp61Asn|181/288|181/288|61/95||	GT:AD:DP:GQ:PL	0/1:44,18:62:99:269,0,1298	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1197_cov63	199911	.	C	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3274;MLEAC=1;MLEAF=0.500;MQ=53.15;MQ0=0;MQRankSum=-1.199;QD=2.06;ReadPosRankSum=-1.201;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.167G>T|p.Ser56Ile|167/288|167/288|56/95||	GT:AD:DP:GQ:PL	0/1:50,10:60:99:152,0,1294	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1197_cov63	200000	.	A	T	1096.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=29.64;SOR=1.270;ANN=T|synonymous_variant|LOW|EXON_scaffold1197_cov63_199790_200077|GENE_EXON_scaffold1197_cov63_199790_200077|transcript|Soaet10009183|protein_coding|1/1|c.78T>A|p.Leu26Leu|78/288|78/288|26/95||	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1125,84,0	scaffold1197_cov63	GLEAN	mRNA	199790	200077	0.86	-	.	ID=Soaet10009183
scaffold1275_cov62	56951	.	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=32.87;SOR=0.957;ANN=G|missense_variant|MODERATE|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/2|c.31A>G|p.Ile11Val|31/489|31/489|11/162||	GT:AD:DP:GQ:PL	1/1:0,32:33:81:1080,81,0	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57017	.	G	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=1;MQRankSum=0.000;QD=14.46;ReadPosRankSum=-1.420;SOR=0.711;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/2|c.97G>A|p.Ala33Thr|97/489|97/489|33/162||	GT:AD:DP:GQ:PL	0/1:17,22:40:99:592,0,383	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57027	.	G	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.297;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.944;SOR=1.112;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/2|c.107G>A|p.Arg36His|107/489|107/489|36/162||	GT:AD:DP:GQ:PL	0/1:22,15:37:99:380,0,625	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57129	.	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DP=36;Dels=0.00;ExcessHet=3.0103;FS=10.352;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=1;MQRankSum=0.000;QD=13.88;ReadPosRankSum=0.133;SOR=1.477;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/2|c.209C>T|p.Thr70Ile|209/489|209/489|70/162||	GT:AD:DP:GQ:PL	0/1:19,17:36:99:528,0,541	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57222	.	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.384;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-1.497;SOR=0.799;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/2|c.302C>T|p.Thr101Ile|302/489|302/489|101/162||	GT:AD:DP:GQ:PL	0/1:23,12:35:99:326,0,561	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57238	.	C	T	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.24;ReadPosRankSum=1.087;SOR=0.812;ANN=T|synonymous_variant|LOW|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/2|c.318C>T|p.Leu106Leu|318/489|318/489|106/162||	GT:AD:DP:GQ:PL	0/1:12,21:33:99:564,0,371	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57286	.	A	G	939.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.13;SOR=1.697;ANN=G|synonymous_variant|LOW|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/2|c.366A>G|p.Leu122Leu|366/489|366/489|122/162||	GT:AD:DP:GQ:PL	1/1:0,26:26:69:968,69,0	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57408	.	G	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=1.565;QD=17.68;ReadPosRankSum=0.142;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+109G>C||||||	GT:AD:DP:GQ:PL	0/1:9,20:29:99:541,0,232	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57414	.	A	G	853.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=32.84;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+115A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:27:63:882,63,0	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57423	.	C	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-1.543;QD=5.37;ReadPosRankSum=0.024;SOR=0.846;ANN=T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+124C>T||||||	GT:AD:DP:GQ:PL	0/1:21,8:29:99:184,0,581	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57525	.	G	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.796;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.82;ReadPosRankSum=0.095;SOR=1.245;ANN=T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+226G>T||||||	GT:AD:DP:GQ:PL	0/1:9,14:23:99:461,0,267	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57581	.	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.490;SOR=0.495;ANN=T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+282C>T||||||	GT:AD:DP:GQ:PL	0/1:18,9:27:99:228,0,544	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57640	.	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.649;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.63;ReadPosRankSum=1.331;SOR=1.040;ANN=T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+341C>T||||||	GT:AD:DP:GQ:PL	0/1:14,16:30:99:467,0,382	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57647	.	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.32;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+348T>C||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1091,78,0	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57655	.	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.649;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.791;SOR=1.040;ANN=T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+356C>T||||||	GT:AD:DP:GQ:PL	0/1:14,16:30:99:455,0,437	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57680	.	T	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.449;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.93;ReadPosRankSum=0.701;SOR=0.991;ANN=A|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.379+381T>A||||||	GT:AD:DP:GQ:PL	0/1:13,18:31:99:460,0,414	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57711	.	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.155;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.60;ReadPosRankSum=1.638;SOR=1.635;ANN=A|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.380-357G>A||||||	GT:AD:DP:GQ:PL	0/1:15,21:36:99:518,0,385	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	57869	.	A	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.721;SOR=0.392;ANN=G|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.380-199A>G||||||	GT:AD:DP:GQ:PL	0/1:20,12:32:99:269,0,618	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	58035	.	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.115;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.60;ReadPosRankSum=-0.129;SOR=1.221;ANN=A|intron_variant|MODIFIER|EXON_scaffold1275_cov62_56921_57299|GENE_EXON_scaffold1275_cov62_56921_57299|transcript|Soaet10009082|protein_coding|1/1|c.380-33G>A||||||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:237,0,299	scaffold1275_cov62	GLEAN	mRNA	56921	58177	0.61	+	.	ID=Soaet10009082
scaffold1275_cov62	69383	.	T	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;DP=23;Dels=0.00;ExcessHet=3.0103;FS=10.488;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=1.044;QD=12.82;ReadPosRankSum=3.049;SOR=2.457;ANN=A|stop_gained|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.8038A>T|p.Lys2680*|8038/8049|8038/8049|2680/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:323,0,257	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	69469	.	A	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.95;ReadPosRankSum=1.106;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.7952T>A|p.Val2651Glu|7952/8049|7952/8049|2651/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,9:25:99:202,0,401	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	69591	.	G	A	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.49;ReadPosRankSum=-0.955;SOR=0.874;ANN=A|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.7830C>T|p.Phe2610Phe|7830/8049|7830/8049|2610/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,22:34:99:623,0,338	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	69605	.	T	C	1086.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.05;SOR=0.869;ANN=C|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.7816A>G|p.Lys2606Glu|7816/8049|7816/8049|2606/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1115,81,0	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	69620	.	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.532;SOR=1.128;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.7801G>A|p.Val2601Ile|7801/8049|7801/8049|2601/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,13:34:99:328,0,694	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	69963	.	C	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.07;MQ0=0;MQRankSum=1.169;QD=16.71;ReadPosRankSum=0.525;SOR=1.206;ANN=G|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.7458G>C|p.Met2486Ile|7458/8049|7458/8049|2486/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:212,0,156	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	70462	.	C	T	1222.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.007;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9768;MLEAC=2;MLEAF=1.00;MQ=13.55;MQ0=12;MQRankSum=-0.912;QD=8.73;ReadPosRankSum=1.857;SOR=0.269;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.6959G>A|p.Arg2320Gln|6959/8049|6959/8049|2320/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,138:140:90:1251,90,0	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	72440	.	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-0.053;QD=14.66;ReadPosRankSum=0.653;SOR=0.593;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.4981G>A|p.Ala1661Thr|4981/8049|4981/8049|1661/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:424,0,398	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	72621	.	C	G	1173.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.72;SOR=0.984;ANN=G|stop_lost|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.4800G>C|p.Ter1600Tyrext*?|4800/8049|4800/8049|1600/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1202,87,0	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	72634	.	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.402;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-0.324;SOR=0.385;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.4787C>T|p.Ala1596Val|4787/8049|4787/8049|1596/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,13:36:99:316,0,620	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	72986	.	T	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=0.000;QD=17.61;ReadPosRankSum=0.036;SOR=0.836;ANN=A|stop_gained|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.4435A>T|p.Lys1479*|4435/8049|4435/8049|1479/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,13:22:99:398,0,242	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73006	.	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.957;QD=12.69;ReadPosRankSum=0.308;SOR=0.654;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.4415G>A|p.Cys1472Tyr|4415/8049|4415/8049|1472/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:320,0,327	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73097	.	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.754;SOR=1.202;ANN=A|stop_gained|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.4324C>T|p.Gln1442*|4324/8049|4324/8049|1442/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,11:24:99:319,0,367	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73206	.	T	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.646;SOR=0.722;ANN=C|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.4215A>G|p.Pro1405Pro|4215/8049|4215/8049|1405/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,9:20:99:278,0,353	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73535	.	G	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=19;Dels=0.00;ExcessHet=3.0103;FS=7.701;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.245;SOR=2.031;ANN=A|stop_gained|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3886C>T|p.Gln1296*|3886/8049|3886/8049|1296/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:244,0,324	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73606	.	T	C	519.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.57;SOR=0.804;ANN=C|stop_lost|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3815A>G|p.Ter1272Trpext*?|3815/8049|3815/8049|1272/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:548,39,0	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73652	.	G	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.80;ReadPosRankSum=1.602;SOR=0.991;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3769C>T|p.Pro1257Ser|3769/8049|3769/8049|1257/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:3,8:11:60:224,0,60	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73831	.	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.291;SOR=1.123;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3590G>A|p.Arg1197Lys|3590/8049|3590/8049|1197/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:445,0,330	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73832	.	T	G	830.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.65;SOR=0.906;ANN=G|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3589A>C|p.Arg1197Arg|3589/8049|3589/8049|1197/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:60:859,60,0	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73853	.	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=30;Dels=0.00;ExcessHet=3.0103;FS=8.700;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.166;SOR=1.997;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3568C>T|p.Pro1190Ser|3568/8049|3568/8049|1190/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:448,0,362	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	73989	.	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.678;SOR=0.616;ANN=A|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3432C>T|p.Phe1144Phe|3432/8049|3432/8049|1144/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-4991G>A|||||4991|	GT:AD:DP:GQ:PL	0/1:23,12:35:99:273,0,603	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	74059	.	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.352;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.189;QD=14.42;ReadPosRankSum=-0.255;SOR=1.177;ANN=C|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.3362A>G|p.Glu1121Gly|3362/8049|3362/8049|1121/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-4921T>C|||||4921|	GT:AD:DP:GQ:PL	0/1:14,19:33:99:504,0,379	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	74473	.	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DP=26;Dels=0.00;ExcessHet=3.0103;FS=8.852;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=1.003;QD=14.91;ReadPosRankSum=0.901;SOR=1.925;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.2948G>A|p.Arg983His|2948/8049|2948/8049|983/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-4507C>T|||||4507|	GT:AD:DP:GQ:PL	0/1:14,12:26:99:416,0,438	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	74610	.	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-1.231;SOR=0.489;ANN=A|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.2811C>T|p.Cys937Cys|2811/8049|2811/8049|937/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-4370G>A|||||4370|	GT:AD:DP:GQ:PL	0/1:10,17:27:99:488,0,243	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75110	.	G	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.13;ReadPosRankSum=1.198;SOR=2.030;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.2311C>A|p.Leu771Ile|2311/8049|2311/8049|771/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3870G>T|||||3870|	GT:AD:DP:GQ:PL	0/1:11,10:21:99:325,0,290	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75211	.	T	C	548.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=30.49;SOR=0.914;ANN=C|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.2210A>G|p.Asp737Gly|2210/8049|2210/8049|737/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3769T>C|||||3769|	GT:AD:DP:GQ:PL	1/1:0,18:18:42:577,42,0	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75482	.	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.648;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.38;ReadPosRankSum=0.612;SOR=0.517;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1939C>T|p.Arg647Cys|1939/8049|1939/8049|647/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3498G>A|||||3498|	GT:AD:DP:GQ:PL	0/1:8,18:27:99:454,0,239	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75544	.	T	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;DP=27;Dels=0.00;ExcessHet=3.0103;FS=5.907;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.77;ReadPosRankSum=-0.176;SOR=1.238;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1877A>T|p.Lys626Met|1877/8049|1877/8049|626/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3436T>A|||||3436|	GT:AD:DP:GQ:PL	0/1:10,17:27:99:481,0,250	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75582	.	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.862;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=1;MQRankSum=-1.372;QD=8.72;ReadPosRankSum=1.107;SOR=1.022;ANN=T|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1839G>A|p.Val613Val|1839/8049|1839/8049|613/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3398C>T|||||3398|	GT:AD:DP:GQ:PL	0/1:17,9:26:99:255,0,550	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75593	.	AGT	A	761.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;DP=24;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=1.606;QD=33.12;ReadPosRankSum=-1.036;SOR=0.223;ANN=A|frameshift_variant|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1826_1827delAC|p.Asp609fs|1827/8049|1826/8049|609/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3386_-3385delGT|||||3386|;LOF=(EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|1|1.00)	GT:AD:DP:GQ:PL	0/1:7,16:23:99:799,0,319	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75666	.	C	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.34;ReadPosRankSum=0.760;SOR=0.776;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1755G>T|p.Leu585Phe|1755/8049|1755/8049|585/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3314C>A|||||3314|	GT:AD:DP:GQ:PL	0/1:12,20:32:99:455,0,349	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	75693	.	G	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-0.056;SOR=0.610;ANN=A|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1728C>T|p.Ser576Ser|1728/8049|1728/8049|576/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-3287G>A|||||3287|	GT:AD:DP:GQ:PL	0/1:21,18:39:99:452,0,450	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76151	.	G	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-0.044;SOR=0.538;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1270C>T|p.His424Tyr|1270/8049|1270/8049|424/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2829G>A|||||2829|	GT:AD:DP:GQ:PL	0/1:5,15:20:99:324,0,132	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76288	.	C	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=0;MQRankSum=1.217;QD=5.36;ReadPosRankSum=0.951;SOR=0.709;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1133G>T|p.Arg378Leu|1133/8049|1133/8049|378/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2692C>A|||||2692|	GT:AD:DP:GQ:PL	0/1:21,9:30:99:189,0,556	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76305	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.523;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=1.383;QD=4.96;ReadPosRankSum=0.828;SOR=0.768;ANN=A|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.1116C>T|p.Pro372Pro|1116/8049|1116/8049|372/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2675G>A|||||2675|	GT:AD:DP:GQ:PL	0/1:22,9:31:99:182,0,558	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76519	.	T	C	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.40;ReadPosRankSum=-0.029;SOR=0.532;ANN=C|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.902A>G|p.Asn301Ser|902/8049|902/8049|301/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2461T>C|||||2461|	GT:AD:DP:GQ:PL	0/1:14,25:39:99:824,0,392	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76588	.	C	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DP=42;Dels=0.00;ExcessHet=3.0103;FS=6.816;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=1.324;QD=16.45;ReadPosRankSum=-0.065;SOR=1.027;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.833G>A|p.Ser278Asn|833/8049|833/8049|278/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2392C>T|||||2392|	GT:AD:DP:GQ:PL	0/1:16,26:42:99:719,0,444	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76610	.	C	T	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;DP=43;Dels=0.00;ExcessHet=3.0103;FS=8.856;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-1.131;QD=11.23;ReadPosRankSum=-0.493;SOR=0.954;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.811G>A|p.Ala271Thr|811/8049|811/8049|271/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2370C>T|||||2370|	GT:AD:DP:GQ:PL	0/1:25,18:43:99:511,0,738	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76659	.	T	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.184;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=1;MQRankSum=0.000;QD=17.54;ReadPosRankSum=-0.652;SOR=0.468;ANN=C|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.762A>G|p.Thr254Thr|762/8049|762/8049|254/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2321T>C|||||2321|	GT:AD:DP:GQ:PL	0/1:17,29:46:99:835,0,396	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76687	.	C	G	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=1;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.253;SOR=0.664;ANN=G|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.734G>C|p.Arg245Thr|734/8049|734/8049|245/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2293C>G|||||2293|	GT:AD:DP:GQ:PL	0/1:26,14:40:99:343,0,689	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76926	.	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.842;SOR=0.518;ANN=A|synonymous_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.495C>T|p.Val165Val|495/8049|495/8049|165/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2054G>A|||||2054|	GT:AD:DP:GQ:PL	0/1:18,17:35:99:361,0,477	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	76956	.	A	C	1071.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;SOR=0.749;ANN=C|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.465T>G|p.Asn155Lys|465/8049|465/8049|155/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-2024A>C|||||2024|	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1100,78,0	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	77054	.	G	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.573;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.77;ReadPosRankSum=1.807;SOR=0.376;ANN=A|stop_gained|HIGH|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.367C>T|p.Gln123*|367/8049|367/8049|123/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-1926G>A|||||1926|	GT:AD:DP:GQ:PL	0/1:9,22:31:99:548,0,233	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	77092	.	G	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-1.929;SOR=0.610;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.329C>T|p.Pro110Leu|329/8049|329/8049|110/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-1888G>A|||||1888|	GT:AD:DP:GQ:PL	0/1:21,12:33:99:335,0,563	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	77125	.	C	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.83;ReadPosRankSum=0.613;SOR=0.804;ANN=T|stop_retained_variant|LOW|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.296G>A|p.Ter99Ter|296/8049|296/8049|99/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-1855C>T|||||1855|	GT:AD:DP:GQ:PL	0/1:15,16:31:99:364,0,478	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	77208	.	T	A	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460;DP=85;Dels=0.00;ExcessHet=3.0103;FS=42.656;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=42.54;MQ0=3;MQRankSum=-6.913;QD=12.62;ReadPosRankSum=-6.450;SOR=4.614;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.213A>T|p.Glu71Asp|213/8049|213/8049|71/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-1772T>A|||||1772|	GT:AD:DP:GQ:PL	0/1:30,55:85:99:1101,0,640	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	77413	.	T	C	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DP=172;Dels=0.00;ExcessHet=3.0103;FS=105.882;HaplotypeScore=10.6267;MLEAC=1;MLEAF=0.500;MQ=32.66;MQ0=10;MQRankSum=-8.892;QD=13.30;ReadPosRankSum=-4.573;SOR=9.720;ANN=C|missense_variant|MODERATE|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding|1/1|c.8A>G|p.Asn3Ser|8/8049|8/8049|3/2682||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding||c.-1567T>C|||||1567|	GT:AD:DP:GQ:PL	0/1:34,137:172:99:2302,0,623	scaffold1275_cov62	GLEAN	mRNA	69372	77420	0.97	-	.	ID=Soaet10009083
scaffold1275_cov62	79070	.	A	AT	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=22;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.94;RPA=7,8;RU=T;ReadPosRankSum=-0.102;SOR=0.368;STR;ANN=AT|splice_donor_variant&intron_variant|HIGH|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding|1/1|c.90+1_90+2insT||||||,AT|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding||c.-1651_-1650insA|||||1651|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|1|1.00)	GT:AD:DP:GQ:PL	0/1:8,14:22:99:388,0,203	scaffold1275_cov62	GLEAN	mRNA	78980	79234	0.97	+	.	ID=Soaet10009084
scaffold1275_cov62	79101	.	C	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=1.825;QD=15.18;ReadPosRankSum=0.094;SOR=0.495;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding||c.-1681G>A|||||1681|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding|1/1|c.90+32C>T||||||	GT:AD:DP:GQ:PL	0/1:16,16:32:99:514,0,425	scaffold1275_cov62	GLEAN	mRNA	78980	79234	0.97	+	.	ID=Soaet10009084
scaffold1275_cov62	79155	.	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.649;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=-1.055;QD=10.20;ReadPosRankSum=-0.939;SOR=1.378;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1275_cov62_69372_77420|GENE_EXON_scaffold1275_cov62_69372_77420|transcript|Soaet10009083|protein_coding||c.-1735G>A|||||1735|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_78980_79069|GENE_EXON_scaffold1275_cov62_78980_79069|transcript|Soaet10009084|protein_coding|1/1|c.91-26C>T||||||	GT:AD:DP:GQ:PL	0/1:14,15:29:99:324,0,371	scaffold1275_cov62	GLEAN	mRNA	78980	79234	0.97	+	.	ID=Soaet10009084
scaffold1275_cov62	186583	.	T	C	149.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SOR=0.941;ANN=C|synonymous_variant|LOW|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|1/5|c.111T>C|p.Asn37Asn|111/774|111/774|37/257||	GT:AD:DP:GQ:PL	1/1:0,7:7:12:177,12,0	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	186607	.	A	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.79;ReadPosRankSum=0.842;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|1/4|c.116+19A>T||||||	GT:AD:DP:GQ:PL	0/1:2,4:6:36:81,0,36	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	186740	.	G	A	164.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=8;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.60;ReadPosRankSum=1.242;SOR=2.303;ANN=A|missense_variant|MODERATE|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|2/5|c.184G>A|p.Gly62Ser|184/774|184/774|62/257||	GT:AD:DP:GQ:PL	0/1:2,6:8:27:193,0,27	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	186855	.	T	C	353.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.48;SOR=1.022;ANN=C|missense_variant|MODERATE|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|2/5|c.299T>C|p.Phe100Ser|299/774|299/774|100/257||	GT:AD:DP:GQ:PL	1/1:0,12:12:27:382,27,0	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	187556	.	A	G	356.78	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|2/4|c.473+527A>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:27:385,27,0	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	187904	.	T	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.272;SOR=1.329;ANN=A|intron_variant|MODIFIER|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|2/4|c.474-470T>A||||||	GT:AD:DP:GQ:PL	0/1:3,5:8:69:151,0,69	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	188147	.	G	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.054;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|2/4|c.474-227G>A||||||	GT:AD:DP:GQ:PL	0/1:6,10:16:99:267,0,171	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	188342	.	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-1.310;SOR=0.883;ANN=A|intron_variant|MODIFIER|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|2/4|c.474-32C>A||||||	GT:AD:DP:GQ:PL	0/1:10,6:16:99:99,0,292	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	188357	.	G	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.25;ReadPosRankSum=0.123;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|2/4|c.474-17G>T||||||	GT:AD:DP:GQ:PL	0/1:10,5:15:99:137,0,226	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	189423	.	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.98;ReadPosRankSum=0.779;SOR=1.329;ANN=T|synonymous_variant|LOW|EXON_scaffold1275_cov62_186473_186588|GENE_EXON_scaffold1275_cov62_186473_186588|transcript|Soaet10009087|protein_coding|5/5|c.735C>T|p.Ile245Ile|735/774|735/774|245/257||	GT:AD:DP:GQ:PL	0/1:6,6:12:99:220,0,107	scaffold1275_cov62	GLEAN	mRNA	186473	189462	0.22	+	.	ID=Soaet10009087
scaffold1275_cov62	219837	.	G	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.778;SOR=0.758;ANN=T|missense_variant|MODERATE|EXON_scaffold1275_cov62_219117_219977|GENE_EXON_scaffold1275_cov62_219117_219977|transcript|Soaet10009088|protein_coding|1/1|c.721G>T|p.Val241Phe|721/861|721/861|241/286||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:203,0,225	scaffold1275_cov62	GLEAN	mRNA	219117	219977	1.00	+	.	ID=Soaet10009088
scaffold1522_cov62	16108	.	TCAGCTTCCGTGAAGATATCCATTCACGAAGTCC	T	3900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-1.131;QD=13.13;ReadPosRankSum=2.246;SOR=0.859;ANN=T|disruptive_inframe_deletion|MODERATE|EXON_scaffold1522_cov62_15874_16671|GENE_EXON_scaffold1522_cov62_15874_16671|transcript|Soaet10009127|protein_coding|1/1|c.236_268delCAGCTTCCGTGAAGATATCCATTCACGAAGTCC|p.Ser79_Arg90delinsTrp|236/798|236/798|79/265||,T|downstream_gene_variant|MODIFIER|EXON_scaffold1522_cov62_17047_17238|GENE_EXON_scaffold1522_cov62_17047_17238|transcript|Soaet10009128|protein_coding||c.*906_*938delGGACTTCGTGAATGGATATCTTCACGGAAGCTG|||||938|,T|downstream_gene_variant|MODIFIER|EXON_scaffold1522_cov62_19415_19756|GENE_EXON_scaffold1522_cov62_19415_19756|transcript|Soaet10009129|protein_coding||c.*3274_*3306delGGACTTCGTGAATGGATATCTTCACGGAAGCTG|||||3306|	GT:AD:DP:GQ:PL	0/1:16,11:34:99:3938,0,4411	scaffold1522_cov62	GLEAN	mRNA	15874	16671	1.00	+	.	ID=Soaet10009127
scaffold1522_cov62	21527	.	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=1.228;QD=6.67;ReadPosRankSum=-0.272;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold1522_cov62_17047_17238|GENE_EXON_scaffold1522_cov62_17047_17238|transcript|Soaet10009128|protein_coding||c.-2701C>T|||||2701|,A|downstream_gene_variant|MODIFIER|EXON_scaffold1522_cov62_15874_16671|GENE_EXON_scaffold1522_cov62_15874_16671|transcript|Soaet10009127|protein_coding||c.*4856G>A|||||4856|,A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_19415_19756|GENE_EXON_scaffold1522_cov62_19415_19756|transcript|Soaet10009129|protein_coding|1/6|c.44+332C>T||||||	GT:AD:DP:GQ:PL	0/1:10,6:16:99:135,0,255	scaffold1522_cov62	GLEAN	mRNA	19415	21902	0.80	-	.	ID=Soaet10009129
scaffold1522_cov62	34409	.	C	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.61;ReadPosRankSum=2.035;SOR=0.804;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1522_cov62_38926_39130|GENE_EXON_scaffold1522_cov62_38926_39130|transcript|Soaet10009131|protein_coding||c.-4517C>T|||||4517|,T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_34092_34191|GENE_EXON_scaffold1522_cov62_34092_34191|transcript|Soaet10009130|protein_coding|4/4|c.708-218G>A||||||	GT:AD:DP:GQ:PL	0/1:9,12:21:99:335,0,244	scaffold1522_cov62	GLEAN	mRNA	34092	36428	0.79	-	.	ID=Soaet10009130
scaffold1522_cov62	126750	.	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9937;MLEAC=1;MLEAF=0.500;MQ=51.83;MQ0=0;MQRankSum=-2.000;QD=3.89;ReadPosRankSum=-0.361;SOR=0.495;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_125594_126262|GENE_EXON_scaffold1522_cov62_125594_126262|transcript|Soaet10009135|protein_coding|1/10|c.669+488C>T||||||	GT:AD:DP:GQ:PL	0/1:7,4:11:71:71,0,158	scaffold1522_cov62	GLEAN	mRNA	125594	133889	0.72	+	.	ID=Soaet10009135
scaffold1522_cov62	126789	.	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8639;MLEAC=1;MLEAF=0.500;MQ=54.94;MQ0=0;MQRankSum=-1.884;QD=3.42;ReadPosRankSum=0.732;SOR=0.593;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_125594_126262|GENE_EXON_scaffold1522_cov62_125594_126262|transcript|Soaet10009135|protein_coding|1/10|c.669+527G>A||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:59:59,0,156	scaffold1522_cov62	GLEAN	mRNA	125594	133889	0.72	+	.	ID=Soaet10009135
scaffold1522_cov62	128032	.	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-2.101;SOR=0.758;ANN=C|intron_variant|MODIFIER|EXON_scaffold1522_cov62_125594_126262|GENE_EXON_scaffold1522_cov62_125594_126262|transcript|Soaet10009135|protein_coding|2/10|c.704-188T>C||||||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:220,0,149	scaffold1522_cov62	GLEAN	mRNA	125594	133889	0.72	+	.	ID=Soaet10009135
scaffold1522_cov62	143245	.	A	G	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.722;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-4.505;QD=0.59;ReadPosRankSum=-2.555;SOR=1.999;ANN=G|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1942T>C||||||	GT:AD:DP:GQ:PL	0/1:29,3:32:47:47,0,824	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143257	.	G	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.352;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-4.539;QD=1.33;ReadPosRankSum=-1.343;SOR=2.120;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1930C>A||||||	GT:AD:DP:GQ:PL	0/1:35,4:39:80:80,0,953	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143266	.	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.541;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=-4.539;QD=1.33;ReadPosRankSum=-0.695;SOR=1.911;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1921G>A||||||	GT:AD:DP:GQ:PL	0/1:35,4:40:80:80,0,961	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143272	.	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=0;MQRankSum=-4.970;QD=2.17;ReadPosRankSum=-1.402;SOR=2.584;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1915G>A||||||	GT:AD:DP:GQ:PL	0/1:34,6:40:99:115,0,999	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143286	.	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.920;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-5.150;QD=3.42;ReadPosRankSum=-1.353;SOR=1.539;ANN=C|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1901A>G||||||	GT:AD:DP:GQ:PL	0/1:32,8:40:99:165,0,839	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143340	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.19;MQ0=3;MQRankSum=-5.139;QD=0.86;ReadPosRankSum=2.026;SOR=0.446;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1847C>T||||||	GT:AD:DP:GQ:PL	0/1:43,10:53:74:74,0,1210	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143349	.	G	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.427;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.46;MQ0=3;MQRankSum=-4.725;QD=0.96;ReadPosRankSum=2.792;SOR=0.343;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1838C>A||||||	GT:AD:DP:GQ:PL	0/1:41,10:52:77:77,0,1160	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143367	.	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.30;MQ0=3;MQRankSum=-2.106;QD=1.72;ReadPosRankSum=0.432;SOR=0.307;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1820G>A||||||	GT:AD:DP:GQ:PL	0/1:39,12:51:99:116,0,1080	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143407	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DP=48;Dels=0.00;ExcessHet=3.0103;FS=7.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.66;MQ0=4;MQRankSum=-0.589;QD=1.75;ReadPosRankSum=1.386;SOR=2.269;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1780C>T||||||	GT:AD:DP:GQ:PL	0/1:40,8:48:99:112,0,1068	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143422	.	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.76;MQ0=4;MQRankSum=-4.835;QD=1.27;ReadPosRankSum=-1.484;SOR=0.804;ANN=C|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1765A>G||||||	GT:AD:DP:GQ:PL	0/1:36,7:43:83:83,0,1031	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143431	.	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.013;HaplotypeScore=9.9967;MLEAC=1;MLEAF=0.500;MQ=54.57;MQ0=4;MQRankSum=-4.600;QD=1.04;ReadPosRankSum=-1.512;SOR=1.692;ANN=G|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1756T>C||||||	GT:AD:DP:GQ:PL	0/1:37,5:42:72:72,0,1034	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	143441	.	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=42;Dels=0.00;ExcessHet=3.0103;FS=4.302;HaplotypeScore=3.9991;MLEAC=1;MLEAF=0.500;MQ=54.93;MQ0=4;MQRankSum=-1.483;QD=2.14;ReadPosRankSum=-1.422;SOR=1.888;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_139854_139948|GENE_EXON_scaffold1522_cov62_139854_139948|transcript|Soaet10009136|protein_coding|1/1|c.19+1746G>A||||||	GT:AD:DP:GQ:PL	0/1:34,8:42:99:118,0,1000	scaffold1522_cov62	GLEAN	mRNA	139854	145205	0.96	-	.	ID=Soaet10009136
scaffold1522_cov62	224506	.	A	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;DP=27;Dels=0.00;ExcessHet=3.0103;FS=9.204;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.43;MQ0=0;MQRankSum=-2.300;QD=8.73;ReadPosRankSum=-0.703;SOR=1.468;ANN=G|missense_variant|MODERATE|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|5/5|c.461T>C|p.Leu154Ser|461/534|461/534|154/177||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:264,0,549	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	224509	.	A	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;DP=27;Dels=0.00;ExcessHet=3.0103;FS=9.204;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.43;MQ0=0;MQRankSum=-2.300;QD=8.73;ReadPosRankSum=-0.854;SOR=1.468;ANN=C|missense_variant|MODERATE|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|5/5|c.458T>G|p.Phe153Cys|458/534|458/534|153/177||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:264,0,549	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225284	.	C	T	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;DP=34;Dels=0.00;ExcessHet=3.0103;FS=4.501;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=0;MQRankSum=-5.683;QD=0.38;ReadPosRankSum=0.584;SOR=1.871;ANN=T|missense_variant|MODERATE|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|3/5|c.197G>A|p.Arg66Gln|197/534|197/534|66/177||	GT:AD:DP:GQ:PL	0/1:29,5:34:41:41,0,915	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225311	.	T	A	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=0;MQRankSum=-4.239;QD=0.82;ReadPosRankSum=-1.111;SOR=0.818;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|2/4|c.182-12A>T||||||	GT:AD:DP:GQ:PL	0/1:26,3:29:52:52,0,803	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225322	.	T	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-4.643;QD=1.65;ReadPosRankSum=-1.797;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|2/4|c.182-23A>C||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:81:81,0,733	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225363	.	A	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;DP=43;Dels=0.00;ExcessHet=3.0103;FS=18.002;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-2.798;QD=7.23;ReadPosRankSum=-2.778;SOR=3.608;ANN=G|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|2/4|c.182-64T>C||||||	GT:AD:DP:GQ:PL	0/1:31,12:43:99:339,0,806	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225424	.	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.281;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=-2.474;QD=6.78;ReadPosRankSum=0.280;SOR=1.387;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|2/4|c.182-125C>T||||||	GT:AD:DP:GQ:PL	0/1:34,17:51:99:374,0,1071	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225607	.	A	T	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=1;MQRankSum=0.936;QD=11.62;ReadPosRankSum=-0.031;SOR=0.520;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|2/4|c.181+61T>A||||||	GT:AD:DP:GQ:PL	0/1:33,26:59:99:714,0,877	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225624	.	A	T	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.989;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.25;ReadPosRankSum=0.208;SOR=0.885;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|2/4|c.181+44T>A||||||	GT:AD:DP:GQ:PL	0/1:33,27:60:99:823,0,886	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225652	.	C	T	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.78;ReadPosRankSum=-0.713;SOR=0.818;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|2/4|c.181+16G>A||||||	GT:AD:DP:GQ:PL	0/1:19,33:52:99:1057,0,504	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225821	.	T	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-1.221;QD=15.11;ReadPosRankSum=-0.575;SOR=0.735;ANN=C|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.109-81A>G||||||	GT:AD:DP:GQ:PL	0/1:11,14:25:99:406,0,204	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225835	.	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-1.382;QD=13.26;ReadPosRankSum=-1.742;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.109-95T>C||||||	GT:AD:DP:GQ:PL	0/1:11,11:22:99:320,0,253	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225851	.	AG	A	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;DP=25;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=-3.185;QD=8.29;RPA=2,1;RU=G;ReadPosRankSum=-0.636;SOR=1.609;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.109-112delC||||||	GT:AD:DP:GQ:PL	0/1:16,7:25:99:228,0,610	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225858	.	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.697;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.77;MQ0=0;MQRankSum=-3.590;QD=9.95;ReadPosRankSum=-1.618;SOR=1.402;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.109-118G>A||||||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:277,0,398	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225900	.	A	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=0;MQRankSum=-3.459;QD=10.91;ReadPosRankSum=-0.826;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.109-160T>G||||||	GT:AD:DP:GQ:PL	0/1:18,17:35:99:410,0,397	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	225963	.	C	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=0;MQRankSum=-2.418;QD=11.41;ReadPosRankSum=3.059;SOR=0.596;ANN=T|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.108+182G>A||||||	GT:AD:DP:GQ:PL	0/1:20,23:43:99:519,0,466	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	226012	.	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.709;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-1.409;QD=9.49;ReadPosRankSum=-1.138;SOR=0.873;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.108+133C>T||||||	GT:AD:DP:GQ:PL	0/1:23,19:43:99:427,0,594	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	226034	.	C	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-2.994;QD=14.29;ReadPosRankSum=-1.483;SOR=1.085;ANN=G|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.108+111G>C||||||	GT:AD:DP:GQ:PL	0/1:18,22:40:99:600,0,467	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	226095	.	A	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.331;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=56.21;MQ0=0;MQRankSum=-3.160;QD=13.38;ReadPosRankSum=1.112;SOR=0.974;ANN=G|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.108+50T>C||||||	GT:AD:DP:GQ:PL	0/1:15,24:39:99:550,0,424	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	226105	.	T	A	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.227;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=55.77;MQ0=0;MQRankSum=-3.441;QD=13.21;ReadPosRankSum=1.834;SOR=0.864;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.108+40A>T||||||	GT:AD:DP:GQ:PL	0/1:17,25:42:99:583,0,396	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	226133	.	T	A	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4950;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-3.272;QD=10.58;ReadPosRankSum=2.046;SOR=0.575;ANN=A|intron_variant|MODIFIER|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/4|c.108+12A>T||||||	GT:AD:DP:GQ:PL	0/1:20,23:43:99:483,0,544	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	226182	.	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=0;MQRankSum=-0.723;QD=6.49;ReadPosRankSum=-0.387;SOR=0.631;ANN=A|missense_variant|MODERATE|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/5|c.71C>T|p.Ser24Phe|71/534|71/534|24/177||	GT:AD:DP:GQ:PL	0/1:31,15:46:99:327,0,696	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1522_cov62	226214	.	T	A	17.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.934;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.66;MQ0=0;MQRankSum=-4.239;QD=0.42;ReadPosRankSum=-1.088;SOR=3.312;ANN=A|missense_variant|MODERATE|EXON_scaffold1522_cov62_224433_224634|GENE_EXON_scaffold1522_cov62_224433_224634|transcript|Soaet10009143|protein_coding|1/5|c.39A>T|p.Lys13Asn|39/534|39/534|13/177||	GT:AD:DP:GQ:PL	0/1:37,5:42:46:46,0,926	scaffold1522_cov62	GLEAN	mRNA	224433	226252	0.42	-	.	ID=Soaet10009143
scaffold1779_cov64	126406	.	C	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.00;ReadPosRankSum=1.015;SOR=0.665;ANN=G|missense_variant|MODERATE|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|4/4|c.478G>C|p.Ala160Pro|478/510|478/510|160/169||	GT:AD:DP:GQ:PL	0/1:30,25:55:99:688,0,769	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126411	.	T	C	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.054;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-0.018;SOR=0.627;ANN=C|missense_variant|MODERATE|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|4/4|c.473A>G|p.Glu158Gly|473/510|473/510|158/169||	GT:AD:DP:GQ:PL	0/1:24,29:53:99:741,0,680	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126474	.	G	A	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.247;HaplotypeScore=6.1567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.680;SOR=1.085;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.413-3C>T||||||	GT:AD:DP:GQ:PL	0/1:18,22:41:99:656,0,499	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126499	.	C	T	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.149;HaplotypeScore=4.2735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.73;ReadPosRankSum=1.034;SOR=1.051;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.413-28G>A||||||	GT:AD:DP:GQ:PL	0/1:22,24:46:99:660,0,623	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126503	.	G	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.49;ReadPosRankSum=1.259;SOR=0.859;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.413-32C>A||||||	GT:AD:DP:GQ:PL	0/1:21,23:44:99:666,0,548	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126505	.	T	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.88;ReadPosRankSum=0.975;SOR=0.754;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.413-34A>G||||||	GT:AD:DP:GQ:PL	0/1:20,23:43:99:668,0,557	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126599	.	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.755;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-1.462;QD=13.17;ReadPosRankSum=0.825;SOR=1.428;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.413-128G>A||||||	GT:AD:DP:GQ:PL	0/1:24,22:46:99:634,0,610	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126608	.	T	C	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.098;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.714;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-1.828;QD=12.36;ReadPosRankSum=0.764;SOR=1.784;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.413-137A>G||||||	GT:AD:DP:GQ:PL	0/1:23,21:44:99:572,0,659	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126643	.	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.624;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-1.591;QD=14.04;ReadPosRankSum=-1.073;SOR=1.802;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+138A>G||||||	GT:AD:DP:GQ:PL	0/1:20,24:44:99:646,0,566	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126662	.	T	C	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DP=36;Dels=0.03;ExcessHet=3.0103;FS=5.287;HaplotypeScore=19.8009;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.941;QD=11.90;ReadPosRankSum=-1.017;SOR=1.706;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+119A>G||||||	GT:AD:DP:GQ:PL	0/1:17,17:35:99:433,0,508	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126679	.	A	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.245;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-0.616;QD=11.38;ReadPosRankSum=0.613;SOR=1.387;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+102T>A||||||	GT:AD:DP:GQ:PL	0/1:16,15:31:99:381,0,445	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126687	.	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=-0.109;QD=8.92;ReadPosRankSum=0.437;SOR=0.762;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+94G>A||||||	GT:AD:DP:GQ:PL	0/1:15,14:29:99:287,0,376	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126696	.	G	A	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.5264;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=0.139;QD=8.92;ReadPosRankSum=1.650;SOR=0.495;ANN=A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+85C>T||||||	GT:AD:DP:GQ:PL	0/1:16,12:28:99:278,0,407	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126701	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.5264;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=0.139;QD=7.74;ReadPosRankSum=1.626;SOR=0.495;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+80G>A||||||	GT:AD:DP:GQ:PL	0/1:16,12:28:99:245,0,420	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126705	.	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.5264;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=0.318;QD=3.24;ReadPosRankSum=-0.823;SOR=0.839;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+76G>A||||||	GT:AD:DP:GQ:PL	0/1:21,7:28:99:119,0,582	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126706	.	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.5264;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=0.216;QD=9.66;ReadPosRankSum=1.294;SOR=0.582;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/3|c.412+75T>C||||||	GT:AD:DP:GQ:PL	0/1:15,12:28:99:289,0,408	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126792	.	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.607;HaplotypeScore=5.5359;MLEAC=1;MLEAF=0.500;MQ=53.58;MQ0=0;MQRankSum=-3.697;QD=1.58;ReadPosRankSum=1.140;SOR=3.606;ANN=C|missense_variant|MODERATE|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/4|c.401A>G|p.Asn134Ser|401/510|401/510|134/169||	GT:AD:DP:GQ:PL	0/1:17,5:22:63:63,0,444	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126802	.	A	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.035;HaplotypeScore=4.7472;MLEAC=1;MLEAF=0.500;MQ=53.25;MQ0=0;MQRankSum=-3.379;QD=5.80;ReadPosRankSum=-0.749;SOR=2.554;ANN=C|missense_variant|MODERATE|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/4|c.391T>G|p.Tyr131Asp|391/510|391/510|131/169||	GT:AD:DP:GQ:PL	0/1:14,7:21:99:150,0,325	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126820	.	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=23;Dels=0.00;ExcessHet=3.0103;FS=8.280;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.87;MQ0=0;MQRankSum=-3.609;QD=4.90;ReadPosRankSum=-0.905;SOR=2.538;ANN=A|missense_variant|MODERATE|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|3/4|c.373C>T|p.Leu125Phe|373/510|373/510|125/169||	GT:AD:DP:GQ:PL	0/1:16,7:23:99:141,0,445	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126948	.	G	A	632.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.46;SOR=1.863;ANN=A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|2/3|c.291-46C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:48:661,48,0	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	126992	.	C	T	758.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.62;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|2/3|c.290+24G>A||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:57:787,57,0	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	127196	.	C	T	806.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=33.62;SOR=0.859;ANN=T|missense_variant|MODERATE|EXON_scaffold1779_cov64_126374_126471|GENE_EXON_scaffold1779_cov64_126374_126471|transcript|Soaet10008996|protein_coding|2/4|c.110G>A|p.Cys37Tyr|110/510|110/510|37/169||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:835,60,0	scaffold1779_cov64	GLEAN	mRNA	126374	127394	0.79	-	.	ID=Soaet10008996
scaffold1779_cov64	165348	.	T	G	1283.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.92;SOR=0.850;ANN=G|missense_variant|MODERATE|EXON_scaffold1779_cov64_164964_165361|GENE_EXON_scaffold1779_cov64_164964_165361|transcript|Soaet10008997|protein_coding|1/3|c.385T>G|p.Tyr129Asp|385/786|385/786|129/261||	GT:AD:DP:GQ:PL	1/1:0,39:39:93:1312,93,0	scaffold1779_cov64	GLEAN	mRNA	164964	167434	0.78	+	.	ID=Soaet10008997
scaffold1779_cov64	165399	.	A	C	1287.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;SOR=0.829;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_164964_165361|GENE_EXON_scaffold1779_cov64_164964_165361|transcript|Soaet10008997|protein_coding|1/2|c.398+38A>C||||||	GT:AD:DP:GQ:PL	1/1:0,45:45:93:1316,93,0	scaffold1779_cov64	GLEAN	mRNA	164964	167434	0.78	+	.	ID=Soaet10008997
scaffold1779_cov64	165758	.	C	T	802.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.45;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_164964_165361|GENE_EXON_scaffold1779_cov64_164964_165361|transcript|Soaet10008997|protein_coding|1/2|c.398+397C>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:831,60,0	scaffold1779_cov64	GLEAN	mRNA	164964	167434	0.78	+	.	ID=Soaet10008997
scaffold1779_cov64	165770	.	TG	T	908.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.93;RPA=4,3;RU=G;SOR=0.693;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_164964_165361|GENE_EXON_scaffold1779_cov64_164964_165361|transcript|Soaet10008997|protein_coding|1/2|c.399-396delG||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:72:946,72,0	scaffold1779_cov64	GLEAN	mRNA	164964	167434	0.78	+	.	ID=Soaet10008997
scaffold1779_cov64	166354	.	G	A	725.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.56;SOR=0.776;ANN=A|missense_variant|MODERATE|EXON_scaffold1779_cov64_164964_165361|GENE_EXON_scaffold1779_cov64_164964_165361|transcript|Soaet10008997|protein_coding|2/3|c.586G>A|p.Asp196Asn|586/786|586/786|196/261||	GT:AD:DP:GQ:PL	1/1:0,23:23:54:754,54,0	scaffold1779_cov64	GLEAN	mRNA	164964	167434	0.78	+	.	ID=Soaet10008997
scaffold1779_cov64	166824	.	A	T	735.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.30;SOR=0.846;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_164964_165361|GENE_EXON_scaffold1779_cov64_164964_165361|transcript|Soaet10008997|protein_coding|2/2|c.609-433A>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:54:764,54,0	scaffold1779_cov64	GLEAN	mRNA	164964	167434	0.78	+	.	ID=Soaet10008997
scaffold1779_cov64	187787	.	T	C	237.84	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SOR=0.859;ANN=C|synonymous_variant|LOW|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/5|c.45T>C|p.Leu15Leu|45/1131|45/1131|15/376||	GT:AD:DP:GQ:PL	1/1:0,11:11:18:266,18,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	188016	.	G	GT	198.75	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;RPA=9,10;RU=T;SOR=1.863;STR;ANN=GT|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/4|c.186+88_186+89insT||||||	GT:AD:DP:GQ:PL	1/1:0,8:9:24:236,24,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	188097	.	C	T	542.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.93;ReadPosRankSum=-1.533;SOR=0.330;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/4|c.186+169C>T||||||	GT:AD:DP:GQ:PL	1/1:1,16:17:42:571,42,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	188279	.	A	G	513.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/4|c.186+351A>G||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:39:542,39,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	188288	.	A	G	469.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SOR=0.914;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/4|c.186+360A>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:36:498,36,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	188625	.	T	G	939.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=28.48;SOR=1.352;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/4|c.186+697T>G||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:69:968,69,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	188910	.	A	G	851.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.42;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/4|c.186+982A>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:63:880,63,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	189821	.	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.41;SOR=1.209;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|1/4|c.187-499T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1231,90,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	190570	.	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SOR=0.954;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|2/4|c.328+109A>G||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:90:1258,90,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	190713	.	A	C	874.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.40;SOR=1.101;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|2/4|c.328+252A>C||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:66:903,66,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	191137	.	CTAGATTCTAACATATGGAGTTATAGAACATGA	C	2437.75	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.57;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|2/4|c.329-129_329-98delTAGATTCTAACATATGGAGTTATAGAACATGA||||||	GT:AD:DP:GQ:PL	1/1:0,8:16:24:2475,24,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	191638	.	T	C	937.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.73;SOR=0.922;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*4822A>G|||||4822|,C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.555+145T>C||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:69:966,69,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	191655	.	G	C	859.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.07;SOR=1.220;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*4805C>G|||||4805|,C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.555+162G>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:66:888,66,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	191656	.	C	A	862.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.51;SOR=1.136;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*4804G>T|||||4804|,A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.555+163C>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:66:891,66,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	191984	.	T	G	944.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=29.52;SOR=0.693;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*4476A>C|||||4476|,G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.555+491T>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:973,69,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	192189	.	C	CTA	580.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=27.13;SOR=1.445;ANN=CTA|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*4270_*4271insTA|||||4270|,CTA|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.555+696_555+697insTA||||||	GT:AD:DP:GQ:PL	1/1:0,12:13:36:618,36,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	192254	.	A	G	411.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.45;SOR=0.818;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*4206T>C|||||4206|,G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.556-719A>G||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:440,33,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	192306	.	AC	A	761.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=30.02;RPA=2,1;RU=C;SOR=1.292;STR;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*4153delG|||||4153|,A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.556-666delC||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:57:799,57,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	192561	.	G	T	603.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=1;QD=33.54;SOR=1.061;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*3899C>A|||||3899|,T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.556-412G>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:19:45:632,45,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	192837	.	T	C	1133.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.07;SOR=0.743;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*3623A>G|||||3623|,C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|3/4|c.556-136T>C||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:81:1162,81,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	193243	.	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.88;SOR=0.749;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*3217T>C|||||3217|,G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|4/4|c.813+13A>G||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:75:1074,75,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	193752	.	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.91;SOR=0.927;ANN=C|synonymous_variant|LOW|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding|5/5|c.1020T>C|p.Arg340Arg|1020/1131|1020/1131|340/376||,C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding||c.*2708A>G|||||2708|	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1285,93,0	scaffold1779_cov64	GLEAN	mRNA	187743	193863	0.61	+	.	ID=Soaet10008998
scaffold1779_cov64	196781	.	T	C	891.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.85;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding|5/5|c.930A>G|p.Arg310Arg|930/1251|930/1251|310/416||,C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding||c.*2918T>C|||||2918|	GT:AD:DP:GQ:PL	1/1:0,28:28:66:920,66,0	scaffold1779_cov64	GLEAN	mRNA	196460	198090	0.36	-	.	ID=Soaet10008999
scaffold1779_cov64	197055	.	T	C	787.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.2755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.51;SOR=0.770;ANN=C|missense_variant|MODERATE|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding|5/5|c.656A>G|p.Asn219Ser|656/1251|656/1251|219/416||,C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding||c.*3192T>C|||||3192|	GT:AD:DP:GQ:PL	1/1:0,25:25:60:816,60,0	scaffold1779_cov64	GLEAN	mRNA	196460	198090	0.36	-	.	ID=Soaet10008999
scaffold1779_cov64	197274	.	G	A	540.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.886;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.04;ReadPosRankSum=0.868;SOR=0.264;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding||c.*3411G>A|||||3411|,A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding|4/4|c.508+24C>T||||||	GT:AD:DP:GQ:PL	1/1:1,19:21:42:569,42,0	scaffold1779_cov64	GLEAN	mRNA	196460	198090	0.36	-	.	ID=Soaet10008999
scaffold1779_cov64	197605	.	T	A	512.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.71;SOR=1.765;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding||c.*3742T>A|||||3742|,A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding|3/4|c.417+25A>T||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:39:541,39,0	scaffold1779_cov64	GLEAN	mRNA	196460	198090	0.36	-	.	ID=Soaet10008999
scaffold1779_cov64	198022	.	A	G	774.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SOR=0.765;ANN=G|synonymous_variant|LOW|EXON_scaffold1779_cov64_196460_197202|GENE_EXON_scaffold1779_cov64_196460_197202|transcript|Soaet10008999|protein_coding|1/5|c.69T>C|p.Asn23Asn|69/1251|69/1251|23/416||,G|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_187743_187928|GENE_EXON_scaffold1779_cov64_187743_187928|transcript|Soaet10008998|protein_coding||c.*4159A>G|||||4159|	GT:AD:DP:GQ:PL	1/1:0,27:27:57:803,57,0	scaffold1779_cov64	GLEAN	mRNA	196460	198090	0.36	-	.	ID=Soaet10008999
scaffold1779_cov64	224841	.	G	A	306.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.68;SOR=0.693;ANN=A|stop_gained|HIGH|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding|1/1|c.388C>T|p.Arg130*|388/396|388/396|130/131||,A|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding||c.*1873C>T|||||1873|	GT:AD:DP:GQ:PL	1/1:0,10:10:24:335,24,0	scaffold1779_cov64	GLEAN	mRNA	224833	225228	0.97	-	.	ID=Soaet10009001
scaffold1779_cov64	224852	.	A	ATT	441.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.09;RPA=1,3;RU=T;SOR=0.693;STR;ANN=ATT|frameshift_variant|HIGH|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding|1/1|c.376_377insAA|p.Ile126fs|376/396|376/396|126/131||,ATT|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding||c.*1861_*1862insAA|||||1861|	GT:AD:DP:GQ:PL	1/1:0,10:10:30:479,30,0	scaffold1779_cov64	GLEAN	mRNA	224833	225228	0.97	-	.	ID=Soaet10009001
scaffold1779_cov64	224854	.	A	C	284.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;QD=31.64;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding|1/1|c.375T>G|p.Phe125Leu|375/396|375/396|125/131||,C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding||c.*1860T>G|||||1860|	GT:AD:DP:GQ:PL	1/1:0,9:10:21:301,21,0	scaffold1779_cov64	GLEAN	mRNA	224833	225228	0.97	-	.	ID=Soaet10009001
scaffold1779_cov64	225051	.	T	C	399.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=1;QD=26.65;SOR=0.976;ANN=C|missense_variant|MODERATE|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding|1/1|c.178A>G|p.Ile60Val|178/396|178/396|60/131||,C|downstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding||c.*1663A>G|||||1663|	GT:AD:DP:GQ:PL	1/1:0,15:15:30:428,30,0	scaffold1779_cov64	GLEAN	mRNA	224833	225228	0.97	-	.	ID=Soaet10009001
scaffold1779_cov64	227039	.	G	GTGCCTTTGA	2151.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.20;SOR=1.609;ANN=GTGCCTTTGA|upstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding||c.-1812_-1811insTCAAAGGCA|||||1812|,GTGCCTTTGA|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|10/10|c.1266-197_1266-196insTCAAAGGCA||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:57:2189,57,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	227146	.	C	T	392.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;SOR=1.981;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding||c.-1918G>A|||||1918|,T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|10/10|c.1265+289G>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:30:421,30,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	227883	.	T	C	398.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.67;SOR=0.836;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding||c.-2655A>G|||||2655|,C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|8/10|c.1045+136A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:30:427,30,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	228235	.	A	G	599.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SOR=1.609;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding||c.-3007T>C|||||3007|,G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|7/10|c.957-128T>C||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:45:628,45,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	228301	.	T	G	459.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.65;SOR=0.818;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding||c.-3073A>C|||||3073|,G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|7/10|c.957-194A>C||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:36:488,36,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	229768	.	A	T	1150.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=31.97;SOR=1.061;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold1779_cov64_224833_225228|GENE_EXON_scaffold1779_cov64_224833_225228|transcript|Soaet10009001|protein_coding||c.-4540T>A|||||4540|,T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|4/10|c.705-9T>A||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1179,87,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	230388	.	C	G	691.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.67;SOR=0.770;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|3/10|c.466-312G>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:26:51:720,51,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	230408	.	A	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.851;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|3/10|c.466-332T>G||||||	GT:AD:DP:GQ:PL	0/1:14,14:28:99:302,0,337	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	230600	.	A	G	659.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.39;SOR=0.770;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|3/10|c.465+234T>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:48:688,48,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	231414	.	A	AATTTTTT	1304.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;RPA=2,3;RU=ATTTTTT;SOR=1.473;STR;ANN=AATTTTTT|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-239_218-238insAAAAAAT||||||	GT:AD:DP:GQ:PL	1/1:0,15:21:45:1342,45,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	231807	.	A	G	392.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;SOR=1.445;ANN=G|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-631T>C||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:30:421,30,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	232084	.	G	A	357.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.56;SOR=0.976;ANN=A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-908C>T||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:27:386,27,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	232339	.	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.31;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-1163G>A||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1218,87,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	232417	.	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.87;SOR=0.743;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-1241G>A||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1271,90,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	232430	.	G	C	1291.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.12;SOR=0.850;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-1254C>G||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1320,96,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	232486	.	T	C	938.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.28;SOR=0.756;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-1310A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:967,69,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	232507	.	T	A	830.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.77;SOR=0.922;ANN=A|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.218-1331A>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:859,63,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	232924	.	C	T	979.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.99;SOR=0.836;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.217+1407G>A||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:72:1008,72,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	233453	.	C	T	805.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.84;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.217+878G>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:60:834,60,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	233948	.	G	T	1048.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.951;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.77;ReadPosRankSum=-1.409;SOR=0.307;ANN=T|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.217+383C>A||||||	GT:AD:DP:GQ:PL	1/1:1,31:32:78:1077,78,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	233996	.	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.07;SOR=0.798;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.217+335A>G||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1171,84,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	234034	.	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.22;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/10|c.217+297A>G||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:81:1157,81,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold1779_cov64	234441	.	G	T	824.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=32.99;SOR=1.136;ANN=T|missense_variant|MODERATE|EXON_scaffold1779_cov64_226714_226843|GENE_EXON_scaffold1779_cov64_226714_226843|transcript|Soaet10009002|protein_coding|1/11|c.107C>A|p.Thr36Lys|107/1395|107/1395|36/464||	GT:AD:DP:GQ:PL	1/1:0,25:26:63:853,63,0	scaffold1779_cov64	GLEAN	mRNA	226714	234547	0.41	-	.	ID=Soaet10009002
scaffold2492_cov62	69488	.	C	T	738.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7423;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=28.41;SOR=1.445;ANN=T|missense_variant|MODERATE|EXON_scaffold2492_cov62_69373_69654|GENE_EXON_scaffold2492_cov62_69373_69654|transcript|Soaet10008798|protein_coding|1/1|c.116C>T|p.Ser39Leu|116/282|116/282|39/93||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:767,57,0	scaffold2492_cov62	GLEAN	mRNA	69373	69654	0.97	+	.	ID=Soaet10008798
scaffold2492_cov62	173754	.	C	T	609.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.49;SOR=1.127;ANN=T|intron_variant|MODIFIER|EXON_scaffold2492_cov62_172597_173095|GENE_EXON_scaffold2492_cov62_172597_173095|transcript|Soaet10008799|protein_coding|9/10|c.2092-389G>A||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:638,45,0	scaffold2492_cov62	GLEAN	mRNA	172597	180821	1.00	-	.	ID=Soaet10008799
scaffold2492_cov62	175557	.	G	A	766.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.41;SOR=0.990;ANN=A|intron_variant|MODIFIER|EXON_scaffold2492_cov62_172597_173095|GENE_EXON_scaffold2492_cov62_172597_173095|transcript|Soaet10008799|protein_coding|7/10|c.1743+44C>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:57:795,57,0	scaffold2492_cov62	GLEAN	mRNA	172597	180821	1.00	-	.	ID=Soaet10008799
scaffold2492_cov62	179157	.	A	C	894.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.96;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold2492_cov62_172597_173095|GENE_EXON_scaffold2492_cov62_172597_173095|transcript|Soaet10008799|protein_coding|2/10|c.1296-24T>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:66:923,66,0	scaffold2492_cov62	GLEAN	mRNA	172597	180821	1.00	-	.	ID=Soaet10008799
scaffold2492_cov62	206173	.	T	G	440.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=2;QD=24.49;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold2492_cov62_205449_205711|GENE_EXON_scaffold2492_cov62_205449_205711|transcript|Soaet10008800|protein_coding|2/2|c.1381+115A>C||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:33:469,33,0	scaffold2492_cov62	GLEAN	mRNA	205449	207753	1.00	-	.	ID=Soaet10008800
scaffold2492_cov62	207195	.	C	A	754.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.45;SOR=0.859;ANN=A|missense_variant|MODERATE|EXON_scaffold2492_cov62_205449_205711|GENE_EXON_scaffold2492_cov62_205449_205711|transcript|Soaet10008800|protein_coding|1/3|c.559G>T|p.Ala187Ser|559/1644|559/1644|187/547||	GT:AD:DP:GQ:PL	1/1:0,24:24:57:783,57,0	scaffold2492_cov62	GLEAN	mRNA	205449	207753	1.00	-	.	ID=Soaet10008800
scaffold2492_cov62	227001	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=10;MQRankSum=0.992;QD=0.62;ReadPosRankSum=-0.921;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.1057G>A|p.Ala353Thr|1057/1629|1057/1629|353/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*2006G>A|||||2006|	GT:AD:DP:GQ:PL	0/1:16,2:18:39:39,0,39	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227259	.	A	G	44.74	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.14;MQ0=2;QD=4.47;SOR=4.407;ANN=G|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.799T>C|p.Phe267Leu|799/1629|799/1629|267/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1748T>C|||||1748|	GT:AD:DP:GQ:PL	1/1:0,10:10:6:72,6,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227404	.	T	C	1451.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.170;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.7724;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=44;MQRankSum=0.776;QD=10.67;ReadPosRankSum=1.061;SOR=1.196;ANN=C|synonymous_variant|LOW|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.654A>G|p.Val218Val|654/1629|654/1629|218/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1603A>G|||||1603|	GT:AD:DP:GQ:PL	1/1:3,133:139:99:1480,123,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227408	.	A	G	2082.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.548;DP=215;Dels=0.00;ExcessHet=3.0103;FS=18.004;HaplotypeScore=15.2792;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=52;MQRankSum=-2.281;QD=9.78;ReadPosRankSum=-3.811;SOR=3.801;ANN=G|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.650T>C|p.Val217Ala|650/1629|650/1629|217/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1599T>C|||||1599|	GT:AD:DP:GQ:PL	1/1:11,202:215:38:2111,38,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227462	.	T	C	3294.77	.	AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3975;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=94;QD=13.18;SOR=2.459;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.596A>G|p.His199Arg|596/1629|596/1629|199/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1545A>G|||||1545|	GT:AD:DP:GQ:PL	1/1:0,250:250:99:3323,280,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227565	.	A	G	3454.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.7302;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=79;MQRankSum=-0.691;QD=13.93;ReadPosRankSum=0.592;SOR=2.429;ANN=G|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.493T>C|p.Ser165Pro|493/1629|493/1629|165/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1442T>C|||||1442|	GT:AD:DP:GQ:PL	1/1:1,247:250:99:3483,316,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227571	.	T	C	3828.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.532;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.2881;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=76;MQRankSum=-2.079;QD=15.32;ReadPosRankSum=-0.947;SOR=1.457;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.487A>G|p.Lys163Glu|487/1629|487/1629|163/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1436A>G|||||1436|	GT:AD:DP:GQ:PL	1/1:3,247:250:99:3857,340,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227657	.	T	A	3414.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.573;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9913;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=52;MQRankSum=0.119;QD=13.88;ReadPosRankSum=-1.294;SOR=0.418;ANN=A|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.401A>T|p.His134Leu|401/1629|401/1629|134/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1350A>T|||||1350|	GT:AD:DP:GQ:PL	1/1:2,244:250:99:3443,316,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227666	.	T	C	4595.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.712;DP=245;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.8143;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=29;MQRankSum=-1.157;QD=18.76;ReadPosRankSum=0.664;SOR=1.036;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.392A>G|p.Lys131Arg|392/1629|392/1629|131/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1341A>G|||||1341|	GT:AD:DP:GQ:PL	1/1:3,242:245:99:4624,403,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227667	.	T	C	4607.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=250;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=13.7302;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=29;MQRankSum=-0.202;QD=18.43;ReadPosRankSum=0.540;SOR=0.427;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.391A>G|p.Lys131Glu|391/1629|391/1629|131/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1340A>G|||||1340|	GT:AD:DP:GQ:PL	1/1:4,246:250:99:4636,395,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227786	.	T	C	1763.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.995;DP=232;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.2281;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=93;MQRankSum=-1.918;QD=7.74;ReadPosRankSum=1.972;SOR=1.264;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.272A>G|p.Glu91Gly|272/1629|272/1629|91/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1221A>G|||||1221|	GT:AD:DP:GQ:PL	1/1:4,224:232:99:1792,156,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227869	.	A	C	3990.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=249;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=40.0800;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=64;MQRankSum=-2.299;QD=16.16;ReadPosRankSum=-1.826;SOR=9.011;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.189T>G|p.His63Gln|189/1629|189/1629|63/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1138T>G|||||1138|	GT:AD:DP:GQ:PL	1/1:2,245:248:99:4019,394,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227924	.	A	G	4508.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=231;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.9514;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=39;MQRankSum=-1.008;QD=19.60;ReadPosRankSum=1.515;SOR=6.901;ANN=G|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.134T>C|p.Leu45Pro|134/1629|134/1629|45/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1083T>C|||||1083|	GT:AD:DP:GQ:PL	1/1:1,229:231:99:4537,442,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	227977	.	C	T	3688.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=230;Dels=0.00;ExcessHet=3.0103;FS=21.992;HaplotypeScore=16.3940;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=36;MQRankSum=-3.826;QD=16.25;ReadPosRankSum=0.298;SOR=7.836;ANN=T|synonymous_variant|LOW|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.81G>A|p.Ala27Ala|81/1629|81/1629|27/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*1030G>A|||||1030|	GT:AD:DP:GQ:PL	1/1:24,203:230:30:3717,30,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	228008	.	T	C	2278.77	.	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=49;QD=14.51;SOR=6.556;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding|1/1|c.50A>G|p.Glu17Gly|50/1629|50/1629|17/542||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding||c.*999A>G|||||999|	GT:AD:DP:GQ:PL	1/1:0,157:158:99:2307,204,0	scaffold2492_cov62	GLEAN	mRNA	226429	228057	0.70	-	.	ID=Soaet10008801
scaffold2492_cov62	229123	.	T	C	8986.77	.	AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=4;QD=30.58;SOR=2.814;ANN=C|missense_variant|MODERATE|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding|1/1|c.298A>G|p.Lys100Glu|298/414|298/414|100/137||,C|upstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding||c.-1066A>G|||||1066|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,250:250:99:9015,695,0	scaffold2492_cov62	GLEAN	mRNA	229007	229420	0.92	-	.	ID=Soaet10008804
scaffold2492_cov62	229212	.	A	G	9064.77	.	AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=1;QD=34.25;SOR=1.708;ANN=G|missense_variant|MODERATE|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding|1/1|c.209T>C|p.Leu70Pro|209/414|209/414|70/137||,G|upstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding||c.-1155T>C|||||1155|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,249:250:99:9093,689,0	scaffold2492_cov62	GLEAN	mRNA	229007	229420	0.92	-	.	ID=Soaet10008804
scaffold2492_cov62	229280	.	C	A	8012.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.457;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6089;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;MQRankSum=0.432;QD=32.05;ReadPosRankSum=1.078;SOR=0.702;ANN=A|synonymous_variant|LOW|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding|1/1|c.141G>T|p.Pro47Pro|141/414|141/414|47/137||,A|upstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding||c.-1223G>T|||||1223|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,248:250:99:8041,626,0	scaffold2492_cov62	GLEAN	mRNA	229007	229420	0.92	-	.	ID=Soaet10008804
scaffold2492_cov62	229310	.	G	A	7656.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.202;DP=250;Dels=0.00;ExcessHet=3.0103;FS=5.234;HaplotypeScore=7.2323;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=22;MQRankSum=1.159;QD=30.75;ReadPosRankSum=1.229;SOR=0.069;ANN=A|synonymous_variant|LOW|EXON_scaffold2492_cov62_229007_229420|GENE_EXON_scaffold2492_cov62_229007_229420|transcript|Soaet10008804|protein_coding|1/1|c.111C>T|p.Ile37Ile|111/414|111/414|37/137||,A|upstream_gene_variant|MODIFIER|EXON_scaffold2492_cov62_226429_228057|GENE_EXON_scaffold2492_cov62_226429_228057|transcript|Soaet10008801|protein_coding||c.-1253C>T|||||1253|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:5,244:250:99:7685,463,0	scaffold2492_cov62	GLEAN	mRNA	229007	229420	0.92	-	.	ID=Soaet10008804
scaffold3292_cov71	1132	.	T	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.51;ReadPosRankSum=0.121;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|1/14|c.191+443T>C||||||	GT:AD:DP:GQ:PL	0/1:14,13:27:99:366,0,322	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	2231	.	T	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=2;MQRankSum=0.895;QD=10.83;ReadPosRankSum=0.000;SOR=0.534;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|1/14|c.192-1317T>C||||||	GT:AD:DP:GQ:PL	0/1:32,22:54:99:613,0,900	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	5193	.	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DP=32;Dels=0.00;ExcessHet=3.0103;FS=7.987;HaplotypeScore=4.6634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.756;SOR=1.839;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|3/14|c.417+999C>T||||||	GT:AD:DP:GQ:PL	0/1:17,15:32:99:347,0,516	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	5639	.	T	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.320;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.62;ReadPosRankSum=1.267;SOR=0.525;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|3/14|c.417+1445T>A||||||	GT:AD:DP:GQ:PL	0/1:10,9:19:99:287,0,316	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	7189	.	G	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.32;ReadPosRankSum=1.557;SOR=1.085;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|3/14|c.418-346G>T||||||	GT:AD:DP:GQ:PL	0/1:8,10:18:99:214,0,220	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	8082	.	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=2;MQRankSum=0.000;QD=13.16;ReadPosRankSum=2.562;SOR=0.458;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|4/14|c.510-227G>A||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:331,0,246	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	8402	.	T	TGCAA	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.33;RPA=2,3;RU=GCAA;ReadPosRankSum=-1.665;SOR=0.836;STR;ANN=TGCAA|frameshift_variant|HIGH|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|5/15|c.608_611dupGCAA|p.Asn204fs|612/3231|612/3231|204/1076||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|1|1.00)	GT:AD:DP:GQ:PL	0/1:11,12:26:99:722,0,656	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	9712	.	C	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.48;ReadPosRankSum=1.440;SOR=0.527;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|8/14|c.1015+289C>G||||||	GT:AD:DP:GQ:PL	0/1:3,7:10:87:223,0,87	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	10194	.	T	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.352;SOR=0.665;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|8/14|c.1016-588T>C||||||	GT:AD:DP:GQ:PL	0/1:12,9:22:99:268,0,354	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	12281	.	A	C	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.90;ReadPosRankSum=1.272;SOR=0.915;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|11/14|c.1727-114A>C||||||	GT:AD:DP:GQ:PL	0/1:14,17:31:99:490,0,288	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	12343	.	A	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.619;HaplotypeScore=5.5767;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=1;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.520;SOR=0.481;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|11/14|c.1727-52A>T||||||	GT:AD:DP:GQ:PL	0/1:8,24:32:99:551,0,198	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	13279	.	GT	G	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.674;QD=8.21;RPA=13,12;RU=T;ReadPosRankSum=0.000;SOR=0.385;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|13/14|c.1991-31delT||||||	GT:AD:DP:GQ:PL	0/1:9,9:20:99:185,0,169	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	13297	.	T	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7308;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.959;QD=10.57;ReadPosRankSum=-0.620;SOR=0.760;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|13/14|c.1991-14T>A||||||	GT:AD:DP:GQ:PL	0/1:8,11:19:99:229,0,249	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	14654	.	A	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.580;SOR=0.223;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_499_689|GENE_EXON_scaffold3292_cov71_499_689|transcript|Soaet10008519|protein_coding|14/14|c.2153-297A>G||||||	GT:AD:DP:GQ:PL	0/1:9,5:14:99:176,0,221	scaffold3292_cov71	GLEAN	mRNA	499	16029	0.69	+	.	ID=Soaet10008519
scaffold3292_cov71	21767	.	G	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.36;ReadPosRankSum=-0.303;SOR=2.670;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_25681_26570|GENE_EXON_scaffold3292_cov71_25681_26570|transcript|Soaet10008521|protein_coding||c.*3914C>T|||||3914|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_21314_21731|GENE_EXON_scaffold3292_cov71_21314_21731|transcript|Soaet10008520|protein_coding|1/3|c.418+36G>A||||||	GT:AD:DP:GQ:PL	0/1:4,12:16:53:370,0,53	scaffold3292_cov71	GLEAN	mRNA	21314	25311	0.61	+	.	ID=Soaet10008520
scaffold3292_cov71	21792	.	C	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.616;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.15;ReadPosRankSum=-1.517;SOR=1.863;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_25681_26570|GENE_EXON_scaffold3292_cov71_25681_26570|transcript|Soaet10008521|protein_coding||c.*3889G>C|||||3889|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_21314_21731|GENE_EXON_scaffold3292_cov71_21314_21731|transcript|Soaet10008520|protein_coding|1/3|c.418+61C>G||||||	GT:AD:DP:GQ:PL	0/1:4,8:12:65:222,0,65	scaffold3292_cov71	GLEAN	mRNA	21314	25311	0.61	+	.	ID=Soaet10008520
scaffold3292_cov71	26371	.	G	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.94;ReadPosRankSum=-0.621;SOR=0.495;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_25681_26570|GENE_EXON_scaffold3292_cov71_25681_26570|transcript|Soaet10008521|protein_coding|2/2|c.1101C>A|p.Thr367Thr|1101/1791|1101/1791|367/596||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_21314_21731|GENE_EXON_scaffold3292_cov71_21314_21731|transcript|Soaet10008520|protein_coding||c.*1060G>T|||||1060|,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding||c.*3244C>A|||||3244|	GT:AD:DP:GQ:PL	0/1:16,20:36:99:566,0,441	scaffold3292_cov71	GLEAN	mRNA	25681	27555	1.00	-	.	ID=Soaet10008521
scaffold3292_cov71	30432	.	C	A	515.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SOR=1.244;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_25681_26570|GENE_EXON_scaffold3292_cov71_25681_26570|transcript|Soaet10008521|protein_coding||c.-2877G>T|||||2877|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|37/37|c.5035-641G>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:544,39,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	30801	.	T	C	1286.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.38;SOR=1.075;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_25681_26570|GENE_EXON_scaffold3292_cov71_25681_26570|transcript|Soaet10008521|protein_coding||c.-3246A>G|||||3246|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|37/37|c.5034+383A>G||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:93:1315,93,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	32347	.	A	G	936.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.30;SOR=1.460;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_25681_26570|GENE_EXON_scaffold3292_cov71_25681_26570|transcript|Soaet10008521|protein_coding||c.-4792T>C|||||4792|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|35/37|c.4869+27T>C||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:69:965,69,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	32401	.	T	C	789.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.21;SOR=1.179;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|35/38|c.4842A>G|p.Lys1614Lys|4842/5211|4842/5211|1614/1736||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_25681_26570|GENE_EXON_scaffold3292_cov71_25681_26570|transcript|Soaet10008521|protein_coding||c.-4846A>G|||||4846|	GT:AD:DP:GQ:PL	1/1:0,28:28:57:818,57,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	33271	.	ATAAAAGAATCCT	A	1944.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.31;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|34/37|c.4810+71_4810+82delAGGATTCTTTTA||||||	GT:AD:DP:GQ:PL	1/1:0,13:16:39:1982,39,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	34418	.	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DP=17;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=0.000;QD=7.88;RPA=14,15;RU=T;ReadPosRankSum=0.481;SOR=0.991;STR;ANN=GT|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|33/37|c.4678+166_4678+167insA||||||	GT:AD:DP:GQ:PL	0/1:3,8:16:40:124,0,40	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	34521	.	T	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.854;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|33/37|c.4678+64A>T||||||	GT:AD:DP:GQ:PL	0/1:8,5:13:75:75,0,255	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	34775	.	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.22;ReadPosRankSum=1.428;SOR=0.505;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|32/37|c.4523-35T>C||||||	GT:AD:DP:GQ:PL	0/1:11,15:26:99:372,0,252	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	35051	.	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.43;SOR=0.826;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|32/37|c.4523-311G>A||||||	GT:AD:DP:GQ:PL	1/1:0,30:31:75:1031,75,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	35074	.	A	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-1.543;SOR=0.986;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|32/37|c.4523-334T>A||||||	GT:AD:DP:GQ:PL	0/1:16,15:31:99:360,0,440	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	36580	.	A	G	928.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.96;SOR=0.756;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|31/38|c.4279T>C|p.Ser1427Pro|4279/5211|4279/5211|1427/1736||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:957,69,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	37160	.	TGAAAGAGGG	T	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DP=23;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.44;ReadPosRankSum=1.307;SOR=0.368;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|30/37|c.4202-512_4202-504delCCCTCTTTC||||||	GT:AD:DP:GQ:PL	0/1:13,8:23:99:884,0,1375	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	37964	.	G	A	1519.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.04;SOR=1.203;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|30/37|c.4201+9C>T||||||	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1548,111,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	39397	.	C	T	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.26;ReadPosRankSum=1.525;SOR=0.392;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|27/38|c.3649G>A|p.Glu1217Lys|3649/5211|3649/5211|1217/1736||	GT:AD:DP:GQ:PL	0/1:20,22:42:99:501,0,577	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	39800	.	A	C	950.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.71;SOR=0.957;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|26/37|c.3602-356T>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:72:979,72,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	40512	.	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.14;SOR=0.811;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|24/38|c.3454G>A|p.Val1152Ile|3454/5211|3454/5211|1152/1736||	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1053,75,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	40574	.	A	T	819.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.53;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|23/37|c.3413-21T>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:848,60,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	40596	.	T	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.60;ReadPosRankSum=0.683;SOR=0.511;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|23/37|c.3413-43A>G||||||	GT:AD:DP:GQ:PL	0/1:10,13:23:99:410,0,275	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	41542	.	C	T	727.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.763;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.139;QD=26.00;ReadPosRankSum=-1.205;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-395G>A||||||	GT:AD:DP:GQ:PL	1/1:2,26:28:15:756,15,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	41556	.	T	A	527.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-0.158;QD=23.99;ReadPosRankSum=-0.858;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-409A>T||||||	GT:AD:DP:GQ:PL	0/1:2,20:23:0:553,0,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	41641	.	C	T	636.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.69;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-494G>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:48:665,48,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	41677	.	A	T	723.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=1;QD=28.95;SOR=0.859;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-530T>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:54:752,54,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	41825	.	T	C	928.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.96;SOR=0.826;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-678A>G||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:69:957,69,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	41899	.	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.685;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.91;ReadPosRankSum=1.259;SOR=0.307;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-752C>T||||||	GT:AD:DP:GQ:PL	0/1:14,10:24:99:242,0,409	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	42287	.	G	A	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.257;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.07;ReadPosRankSum=-1.380;SOR=0.936;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-1140C>T||||||	GT:AD:DP:GQ:PL	0/1:16,21:37:99:697,0,484	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	42993	.	C	T	439.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.49;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3125-1846G>A||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:468,36,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	43494	.	C	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-0.646;SOR=0.721;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+1814G>T||||||	GT:AD:DP:GQ:PL	0/1:9,11:20:99:320,0,214	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	43558	.	G	A	475.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+1750C>T||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:36:504,36,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	44559	.	T	C	1431.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SOR=0.902;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+749A>G||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1460,105,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	44573	.	T	G	1426.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SOR=1.096;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+735A>C||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1455,105,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	44630	.	T	A	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.360;HaplotypeScore=3.8906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.45;ReadPosRankSum=-1.283;SOR=0.252;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+678A>T||||||	GT:AD:DP:GQ:PL	0/1:10,27:38:99:748,0,329	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	44980	.	G	C	792.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2839;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.03;SOR=1.270;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+328C>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:821,60,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	44997	.	A	C	728.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=52.1914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.13;SOR=1.931;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+311T>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:757,54,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	44999	.	ATTG	A	1066.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.82;SOR=1.828;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+306_3124+308delCAA||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:63:1104,63,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	45059	.	ATT	A	944.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.63;RPA=12,10;RU=T;SOR=0.770;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+247_3124+248delAA||||||	GT:AD:DP:GQ:PL	1/1:0,25:28:75:982,75,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	45153	.	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.969;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-0.188;SOR=0.359;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|21/37|c.3124+155C>T||||||	GT:AD:DP:GQ:PL	0/1:11,17:28:99:488,0,312	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	45712	.	TA	T	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=1.091;QD=14.62;RPA=4,3;RU=A;ReadPosRankSum=0.329;SOR=0.426;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|19/37|c.2854-36delT||||||	GT:AD:DP:GQ:PL	0/1:11,11:22:99:359,0,368	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	45722	.	G	A	671.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.21;SOR=0.776;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|19/37|c.2854-45C>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:700,51,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	45805	.	TCAA	T	787.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=32.98;RPA=6,5;RU=CAA;SOR=1.244;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|19/37|c.2854-131_2854-129delTTG||||||	GT:AD:DP:GQ:PL	1/1:0,16:18:48:825,48,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	45858	.	G	A	536.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.576;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6813;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;MQRankSum=0.485;QD=29.82;ReadPosRankSum=-0.869;SOR=0.269;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|19/37|c.2854-181C>T||||||	GT:AD:DP:GQ:PL	1/1:1,17:18:6:564,6,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	46674	.	C	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;DP=10;Dels=0.00;ExcessHet=3.0103;FS=19.243;HaplotypeScore=6.6597;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=1.036;QD=2.48;ReadPosRankSum=0.319;SOR=2.774;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|18/37|c.2726-4G>T||||||	GT:AD:DP:GQ:PL	0/1:7,3:10:53:53,0,165	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	46766	.	C	T	548.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.30;SOR=1.244;ANN=T|splice_region_variant&synonymous_variant|LOW|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|18/38|c.2724G>A|p.Glu908Glu|2724/5211|2724/5211|908/1736||	GT:AD:DP:GQ:PL	1/1:0,16:16:42:577,42,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	47743	.	A	G	898.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.62;SOR=0.859;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|16/37|c.2422+62T>C||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:66:927,66,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	49010	.	A	T	1093.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.38;SOR=1.061;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|14/37|c.2269+566T>A||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1122,81,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	49926	.	T	G	789.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.38;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|13/37|c.2152+179A>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:818,57,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	51966	.	T	C	796.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.87;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|12/37|c.1985+1462A>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:825,60,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	52288	.	T	A	646.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.95;SOR=0.859;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|12/37|c.1985+1140A>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:48:675,48,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	52349	.	A	G	665.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.70;SOR=1.230;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|12/37|c.1985+1079T>C||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:51:694,51,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	53554	.	CA	C	862.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.95;RPA=8,7;RU=A;SOR=0.922;STR;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|11/37|c.1865-7delT||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:81:900,81,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	53578	.	G	T	780.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.19;SOR=0.756;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|11/37|c.1865-30C>A||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:60:809,60,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	53862	.	T	TAA	798.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=4.480;QD=35.38;RPA=2,4;RU=A;ReadPosRankSum=2.333;SOR=0.914;STR;ANN=TAA|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|11/37|c.1865-315_1865-314insTT||||||	GT:AD:DP:GQ:PL	0/1:2,18:21:41:836,0,41	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	54532	.	A	G	308.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.07;SOR=1.270;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|11/37|c.1864+84T>C||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:24:337,24,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	54617	.	A	G	538.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.66;SOR=0.784;ANN=G|splice_region_variant&synonymous_variant|LOW|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|11/38|c.1863T>C|p.Pro621Pro|1863/5211|1863/5211|621/1736||	GT:AD:DP:GQ:PL	1/1:0,21:21:39:567,39,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	54975	.	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=34.25;SOR=1.214;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|10/38|c.1591G>A|p.Val531Ile|1591/5211|1591/5211|531/1736||	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1090,78,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	55336	.	G	GT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=14;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.98;RPA=9,10;RU=T;ReadPosRankSum=-0.705;SOR=0.760;STR;ANN=GT|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|9/37|c.1517-288_1517-287insA||||||	GT:AD:DP:GQ:PL	0/1:6,5:14:99:114,0,141	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	55541	.	T	C	417.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.14;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|9/37|c.1517-492A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:33:446,33,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	55743	.	G	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.57;ReadPosRankSum=1.240;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|9/37|c.1517-694C>T||||||	GT:AD:DP:GQ:PL	0/1:7,17:24:99:498,0,150	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	56200	.	G	T	925.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.29;SOR=1.302;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|9/37|c.1516+686C>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:69:954,69,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	57725	.	A	G	818.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.75;SOR=0.770;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|7/37|c.1315-512T>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:26:60:847,60,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	58145	.	A	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-0.257;SOR=0.694;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|7/37|c.1314+365T>A||||||	GT:AD:DP:GQ:PL	0/1:5,9:14:99:294,0,99	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	58798	.	A	G	399.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.56;SOR=0.976;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|5/37|c.1185+76T>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:428,30,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	59059	.	T	C	659.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.69;SOR=0.963;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|4/38|c.1108A>G|p.Lys370Glu|1108/5211|1108/5211|370/1736||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:688,51,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	59561	.	C	T	655.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.81;SOR=1.085;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|2/37|c.981+75G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:684,51,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	59790	.	C	T	474.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.67;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|1/37|c.910-83G>A||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:503,36,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	60049	.	C	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.255;SOR=1.863;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|1/37|c.910-342G>C||||||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:220,0,220	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	61705	.	A	C	1172.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.49;SOR=0.811;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_29615_29791|GENE_EXON_scaffold3292_cov71_29615_29791|transcript|Soaet10008522|protein_coding|1/38|c.455T>G|p.Leu152Arg|455/5211|455/5211|152/1736||	GT:AD:DP:GQ:PL	1/1:0,34:35:87:1201,87,0	scaffold3292_cov71	GLEAN	mRNA	29615	62159	0.20	-	.	ID=Soaet10008522
scaffold3292_cov71	94679	.	A	G	1033.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SOR=0.968;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding|1/4|c.189A>G|p.Glu63Glu|189/633|189/633|63/210||	GT:AD:DP:GQ:PL	1/1:0,39:39:75:1062,75,0	scaffold3292_cov71	GLEAN	mRNA	94491	99225	0.96	+	.	ID=Soaet10008523
scaffold3292_cov71	94894	.	G	T	448.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.05;SOR=0.941;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding|1/3|c.207+197G>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:33:477,33,0	scaffold3292_cov71	GLEAN	mRNA	94491	99225	0.96	+	.	ID=Soaet10008523
scaffold3292_cov71	95273	.	A	G	813.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.55;SOR=0.770;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding|1/3|c.208-76A>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:842,60,0	scaffold3292_cov71	GLEAN	mRNA	94491	99225	0.96	+	.	ID=Soaet10008523
scaffold3292_cov71	95318	.	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.67;SOR=1.418;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding|1/3|c.208-31A>G||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1105,78,0	scaffold3292_cov71	GLEAN	mRNA	94491	99225	0.96	+	.	ID=Soaet10008523
scaffold3292_cov71	95390	.	G	A	1276.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.14;SOR=1.075;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding|2/4|c.249G>A|p.Leu83Leu|249/633|249/633|83/210||	GT:AD:DP:GQ:PL	1/1:0,41:41:93:1305,93,0	scaffold3292_cov71	GLEAN	mRNA	94491	99225	0.96	+	.	ID=Soaet10008523
scaffold3292_cov71	95934	.	T	G	1036.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.42;SOR=0.752;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding|2/3|c.380+413T>G||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1065,75,0	scaffold3292_cov71	GLEAN	mRNA	94491	99225	0.96	+	.	ID=Soaet10008523
scaffold3292_cov71	98072	.	A	G	961.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.06;SOR=1.284;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.-3156A>G|||||3156|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding|2/3|c.381-171A>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:72:990,72,0	scaffold3292_cov71	GLEAN	mRNA	94491	99225	0.96	+	.	ID=Soaet10008523
scaffold3292_cov71	101326	.	G	A	682.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|1/8|c.99G>A|p.Ala33Ala|99/1956|99/1956|33/651||,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding||c.*2101G>A|||||2101|	GT:AD:DP:GQ:PL	1/1:0,22:22:51:711,51,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	101650	.	T	TAGGGGA	1209.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;RPA=3,4;RU=AGGGGA;SOR=0.941;STR;ANN=TAGGGGA|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding||c.*2425_*2426insAGGGGA|||||2426|,TAGGGGA|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|1/7|c.392+31_392+32insAGGGGA||||||	GT:AD:DP:GQ:PL	1/1:0,16:18:48:1247,48,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	101962	.	CCCCTGGGTGAATGTAGCTCAG	C	1869.75	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.39;SOR=1.179;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding||c.*2738_*2758delCCCTGGGTGAATGTAGCTCAG|||||2738|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|1/7|c.392+344_392+364delCCCTGGGTGAATGTAGCTCAG||||||	GT:AD:DP:GQ:PL	1/1:0,8:14:24:1907,24,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	102257	.	C	A	544.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.67;SOR=0.793;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding||c.*3032C>A|||||3032|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|1/7|c.393-244C>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:42:573,42,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	103326	.	A	C	960.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.45;ReadPosRankSum=0.249;SOR=1.179;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding||c.*4101A>C|||||4101|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|2/7|c.767+451A>C||||||	GT:AD:DP:GQ:PL	0/1:2,33:35:0:986,0,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	103517	.	T	TTATCAAAGA	1822.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.58;SOR=0.941;ANN=TTATCAAAGA|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_94491_94697|GENE_EXON_scaffold3292_cov71_94491_94697|transcript|Soaet10008523|protein_coding||c.*4292_*4293insTATCAAAGA|||||4293|,TTATCAAAGA|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|2/7|c.767+642_767+643insTATCAAAGA||||||	GT:AD:DP:GQ:PL	1/1:0,16:17:48:1860,48,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	105682	.	C	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.734;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.26;ReadPosRankSum=1.725;SOR=1.347;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+896C>G||||||	GT:AD:DP:GQ:PL	0/1:14,12:26:99:347,0,354	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	106578	.	C	G	938.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.28;SOR=0.756;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+1792C>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:967,69,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	106669	.	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.87;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+1883T>C||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1047,75,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	106951	.	T	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.518;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+2165T>C||||||	GT:AD:DP:GQ:PL	0/1:12,13:25:99:318,0,341	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	107624	.	T	TGGGTC	429.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;RPA=3,4;RU=GGGTC;SOR=1.609;STR;ANN=TGGGTC|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+2838_1041+2839insGGGTC||||||	GT:AD:DP:GQ:PL	1/1:0,7:10:21:467,21,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	107849	.	G	A	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.023;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.36;ReadPosRankSum=0.844;SOR=2.200;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+3063G>A||||||	GT:AD:DP:GQ:PL	0/1:12,21:33:99:601,0,315	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	107890	.	C	T	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.425;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.55;ReadPosRankSum=-1.094;SOR=0.973;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+3104C>T||||||	GT:AD:DP:GQ:PL	0/1:16,27:43:99:697,0,432	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	107991	.	T	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.369;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-0.448;SOR=1.164;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+3205T>C||||||	GT:AD:DP:GQ:PL	0/1:26,19:45:99:543,0,808	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	108049	.	G	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=48;Dels=0.00;ExcessHet=3.0103;FS=9.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.667;SOR=2.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1041+3263G>A||||||	GT:AD:DP:GQ:PL	0/1:32,16:48:99:447,0,881	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	108283	.	T	G	1082.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.85;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1042-3268T>G||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1111,78,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	108601	.	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.214;SOR=0.675;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1042-2950C>T||||||	GT:AD:DP:GQ:PL	0/1:23,16:39:99:359,0,733	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	108666	.	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.23;SOR=0.798;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1042-2885C>T||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:81:1139,81,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	109007	.	C	T	989.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=1.143;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1042-2544C>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:72:1018,72,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	110413	.	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.27;SOR=1.061;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1042-1138G>A||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1226,90,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	110885	.	C	A	1354.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.74;SOR=1.096;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1042-666C>A||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1383,99,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	111031	.	G	A	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.461;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.49;ReadPosRankSum=-2.137;SOR=0.799;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|4/7|c.1042-520G>A||||||	GT:AD:DP:GQ:PL	0/1:18,26:44:99:842,0,444	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	111998	.	T	G	734.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.26;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|5/7|c.1083+406T>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:54:763,54,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	112428	.	C	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.32;ReadPosRankSum=-0.099;SOR=0.551;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|5/7|c.1083+836C>T||||||	GT:AD:DP:GQ:PL	0/1:15,16:31:99:503,0,358	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	114489	.	C	T	337.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SOR=0.836;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding||c.-3017C>T|||||3017|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding|6/7|c.1171-603C>T||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:27:366,27,0	scaffold3292_cov71	GLEAN	mRNA	101228	115928	0.81	+	.	ID=Soaet10008524
scaffold3292_cov71	117747	.	C	A	235.84	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SOR=0.859;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.*1819C>A|||||1819|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|1/14|c.139+103C>A||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:18:264,18,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	117916	.	A	T	301.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SOR=1.022;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.*1988A>T|||||1988|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|1/14|c.140-214A>T||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:330,24,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	118461	.	T	A	355.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SOR=0.693;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.*2533T>A|||||2533|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|2/14|c.267+204T>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:27:384,27,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	118674	.	G	C	401.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SOR=0.976;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.*2746G>C|||||2746|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|2/14|c.268-33G>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:430,30,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	119160	.	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.343;SOR=1.075;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|6/15|c.458C>T|p.Thr153Met|458/1284|458/1284|153/427||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.*3232C>T|||||3232|	GT:AD:DP:GQ:PL	0/1:9,6:15:99:162,0,254	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	119794	.	A	AT	272.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.73;RPA=11,12;RU=T;SOR=1.022;STR;ANN=AT|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.*3866_*3867insT|||||3867|,AT|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|7/14|c.597+155_597+156insT||||||	GT:AD:DP:GQ:PL	1/1:0,12:13:36:310,36,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	120154	.	T	C	607.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.96;SOR=1.061;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_101228_101619|GENE_EXON_scaffold3292_cov71_101228_101619|transcript|Soaet10008524|protein_coding||c.*4226T>C|||||4226|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|7/14|c.598-112T>C||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:45:636,45,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	121861	.	C	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.57;ReadPosRankSum=-1.436;SOR=0.976;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|12/14|c.995+347C>G||||||	GT:AD:DP:GQ:PL	0/1:10,14:24:99:354,0,319	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	122097	.	G	A	443.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|12/14|c.996-480G>A||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:33:472,33,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	122673	.	T	G	819.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.79;SOR=1.136;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|13/14|c.1056+36T>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:848,60,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	123272	.	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-1.648;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|14/14|c.1203+174G>A||||||	GT:AD:DP:GQ:PL	0/1:12,12:24:99:408,0,285	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	124112	.	T	A	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.43;ReadPosRankSum=-1.446;SOR=0.758;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.-4351T>A|||||4351|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|14/14|c.1204-97T>A||||||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:288,0,249	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	124154	.	A	T	802.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.45;SOR=0.859;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.-4309A>T|||||4309|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding|14/14|c.1204-55A>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:831,60,0	scaffold3292_cov71	GLEAN	mRNA	117506	124289	0.16	+	.	ID=Soaet10008526
scaffold3292_cov71	128554	.	G	A	863.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.79;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding|1/5|c.92G>A|p.Gly31Glu|92/1419|92/1419|31/472||,A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding||c.-2840G>A|||||2840|,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding||c.*4265G>A|||||4265|	GT:AD:DP:GQ:PL	1/1:0,30:30:66:892,66,0	scaffold3292_cov71	GLEAN	mRNA	128463	130317	0.96	+	.	ID=Soaet10008527
scaffold3292_cov71	129002	.	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.56;SOR=1.308;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding|2/5|c.495A>G|p.Glu165Glu|495/1419|495/1419|165/472||,G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding||c.-2392A>G|||||2392|,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_117506_117644|GENE_EXON_scaffold3292_cov71_117506_117644|transcript|Soaet10008526|protein_coding||c.*4713A>G|||||4713|	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1203,87,0	scaffold3292_cov71	GLEAN	mRNA	128463	130317	0.96	+	.	ID=Soaet10008527
scaffold3292_cov71	129712	.	T	C	772.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.20;ReadPosRankSum=-0.289;SOR=0.340;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding|4/5|c.1050T>C|p.Ile350Ile|1050/1419|1050/1419|350/472||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding||c.-1682T>C|||||1682|	GT:AD:DP:GQ:PL	1/1:1,23:24:57:801,57,0	scaffold3292_cov71	GLEAN	mRNA	128463	130317	0.96	+	.	ID=Soaet10008527
scaffold3292_cov71	130010	.	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;DP=19;Dels=0.00;ExcessHet=3.0103;FS=16.052;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.409;SOR=3.020;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding||c.-1384G>A|||||1384|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding|4/4|c.1174-62G>A||||||	GT:AD:DP:GQ:PL	0/1:10,9:19:99:239,0,332	scaffold3292_cov71	GLEAN	mRNA	128463	130317	0.96	+	.	ID=Soaet10008527
scaffold3292_cov71	130069	.	T	C	804.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.19;SOR=1.136;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding|4/4|c.1174-3T>C||||||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding||c.-1325T>C|||||1325|	GT:AD:DP:GQ:PL	1/1:0,25:25:60:833,60,0	scaffold3292_cov71	GLEAN	mRNA	128463	130317	0.96	+	.	ID=Soaet10008527
scaffold3292_cov71	131721	.	G	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.43;ReadPosRankSum=-2.383;SOR=0.498;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*1404G>A|||||1404|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.258+70G>A||||||	GT:AD:DP:GQ:PL	0/1:11,14:25:99:364,0,338	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	131924	.	A	G	468.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=33.48;SOR=0.976;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*1607A>G|||||1607|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.258+273A>G||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:36:497,36,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	131932	.	T	C	475.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=29.22;SOR=1.179;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*1615T>C|||||1615|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.258+281T>C||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:36:504,36,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132035	.	T	G	689.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=31.35;SOR=1.329;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*1718T>G|||||1718|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.258+384T>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:718,51,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132082	.	A	G	1139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.509;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=6.083;QD=30.80;ReadPosRankSum=1.109;SOR=1.483;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*1765A>G|||||1765|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.258+431A>G||||||	GT:AD:DP:GQ:PL	1/1:2,35:37:46:1168,46,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132241	.	G	C	1103.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=32.46;SOR=1.418;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*1924G>C|||||1924|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.258+590G>C||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1132,81,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132422	.	G	T	719.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=1;QD=26.66;SOR=1.445;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*2105G>T|||||2105|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.259-534G>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:54:748,54,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132464	.	C	T	766.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.79;MQ0=0;MQRankSum=3.170;QD=24.74;ReadPosRankSum=0.267;SOR=0.768;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*2147C>T|||||2147|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.259-492C>T||||||	GT:AD:DP:GQ:PL	0/1:3,28:31:5:794,0,5	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132780	.	T	C	936.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.54;SOR=0.846;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*2463T>C|||||2463|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.259-176T>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:69:965,69,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132782	.	A	G	950.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.87;SOR=0.846;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*2465A>G|||||2465|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.259-174A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:69:979,69,0	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132810	.	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.655;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-3.397;QD=1.38;ReadPosRankSum=-2.798;SOR=2.985;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*2493C>T|||||2493|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.259-146C>T||||||	GT:AD:DP:GQ:PL	0/1:29,5:34:75:75,0,963	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132835	.	C	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=39;Dels=0.00;ExcessHet=3.0103;FS=8.648;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-3.681;QD=2.30;ReadPosRankSum=-0.652;SOR=3.180;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*2518C>G|||||2518|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|1/1|c.259-121C>G||||||	GT:AD:DP:GQ:PL	0/1:34,5:39:99:118,0,971	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	132995	.	T	C	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6959;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=1;MQRankSum=0.000;QD=18.22;ReadPosRankSum=1.356;SOR=0.802;ANN=C|stop_lost&splice_region_variant|HIGH|EXON_scaffold3292_cov71_131394_131651|GENE_EXON_scaffold3292_cov71_131394_131651|transcript|Soaet10008528|protein_coding|2/2|c.298T>C|p.Ter100Argext*?|298/300|298/300|100/99||,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_128463_128758|GENE_EXON_scaffold3292_cov71_128463_128758|transcript|Soaet10008527|protein_coding||c.*2678T>C|||||2678|	GT:AD:DP:GQ:PL	0/1:23,40:63:99:1176,0,482	scaffold3292_cov71	GLEAN	mRNA	131394	132997	1.00	+	.	ID=Soaet10008528
scaffold3292_cov71	143347	.	C	T	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.054;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-1.740;SOR=0.452;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/4|c.18C>T|p.Val6Val|18/654|18/654|6/217||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*564G>A|||||564|	GT:AD:DP:GQ:PL	0/1:27,27:54:99:851,0,688	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143348	.	T	G	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.054;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-1.679;SOR=0.452;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/4|c.19T>G|p.Ser7Ala|19/654|19/654|7/217||,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*563A>C|||||563|	GT:AD:DP:GQ:PL	0/1:27,27:54:99:841,0,694	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143392	.	T	C	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.521;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.28;ReadPosRankSum=1.509;SOR=1.302;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/4|c.63T>C|p.Asp21Asp|63/654|63/654|21/217||,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*519A>G|||||519|	GT:AD:DP:GQ:PL	0/1:22,27:49:99:826,0,552	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143403	.	T	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=1.155;QD=17.80;ReadPosRankSum=1.970;SOR=1.557;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/4|c.74T>C|p.Val25Ala|74/654|74/654|25/217||,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*508A>G|||||508|	GT:AD:DP:GQ:PL	0/1:21,26:47:99:865,0,586	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143413	.	A	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.661;HaplotypeScore=5.7281;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=1.163;QD=18.04;ReadPosRankSum=2.160;SOR=1.358;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/4|c.84A>G|p.Thr28Thr|84/654|84/654|28/217||,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*498T>C|||||498|	GT:AD:DP:GQ:PL	0/1:20,25:45:99:840,0,581	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143455	.	G	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=1.203;QD=18.57;ReadPosRankSum=0.038;SOR=0.602;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/4|c.126G>T|p.Gly42Gly|126/654|126/654|42/217||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*456C>A|||||456|	GT:AD:DP:GQ:PL	0/1:18,24:42:99:808,0,477	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143520	.	T	C	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.742;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.94;ReadPosRankSum=-0.088;SOR=0.368;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*391A>G|||||391|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+39T>C||||||	GT:AD:DP:GQ:PL	0/1:18,20:38:99:558,0,535	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143569	.	A	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.84;ReadPosRankSum=1.003;SOR=0.668;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*342T>C|||||342|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+88A>G||||||	GT:AD:DP:GQ:PL	0/1:19,21:40:99:582,0,535	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143587	.	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.312;SOR=0.714;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*324T>C|||||324|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+106A>G||||||	GT:AD:DP:GQ:PL	0/1:28,11:39:99:244,0,902	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143628	.	T	C	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.288;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.71;ReadPosRankSum=-0.057;SOR=1.003;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*283A>G|||||283|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+147T>C||||||	GT:AD:DP:GQ:PL	0/1:25,20:45:99:645,0,722	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143636	.	T	C	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.305;SOR=0.709;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*275A>G|||||275|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+155T>C||||||	GT:AD:DP:GQ:PL	0/1:24,18:42:99:568,0,723	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143661	.	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.920;SOR=0.593;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*250A>G|||||250|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+180T>C||||||	GT:AD:DP:GQ:PL	0/1:26,20:46:99:598,0,772	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143686	.	T	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.498;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.364;SOR=1.230;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*225A>C|||||225|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+205T>G||||||	GT:AD:DP:GQ:PL	0/1:28,21:49:99:610,0,739	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143762	.	C	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.389;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=-0.914;QD=13.80;ReadPosRankSum=-0.056;SOR=1.240;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*149G>C|||||149|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+281C>G||||||	GT:AD:DP:GQ:PL	0/1:30,27:58:99:815,0,831	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143838	.	C	T	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.122;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=-0.922;QD=11.76;ReadPosRankSum=1.232;SOR=1.067;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*73G>A|||||73|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+357C>T||||||	GT:AD:DP:GQ:PL	0/1:33,30:63:99:769,0,862	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143868	.	G	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.971;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=1.733;QD=10.82;ReadPosRankSum=-0.123;SOR=0.527;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*43C>T|||||43|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+387G>A||||||	GT:AD:DP:GQ:PL	0/1:31,30:61:99:688,0,856	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143899	.	C	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.9905;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=-0.867;QD=13.36;ReadPosRankSum=-0.790;SOR=0.929;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*12G>A|||||12|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+418C>T||||||	GT:AD:DP:GQ:PL	0/1:24,20:44:99:616,0,651	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143899	.	C	CT	888.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.384;DP=44;ExcessHet=3.0103;FS=3.188;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=0.433;QD=34.18;RPA=1,2;RU=T;ReadPosRankSum=-0.578;SOR=0.387;STR;ANN=CT|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*11_*12insA|||||11|,CT|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+418_152+419insT||||||	GT:AD:DP:GQ:PL	1/1:2,24:44:70:926,70,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	143901	.	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.170;HaplotypeScore=21.9906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.88;ReadPosRankSum=1.500;SOR=0.512;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.*10C>A|||||10|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+420G>T||||||	GT:AD:DP:GQ:PL	0/1:20,22:42:99:611,0,614	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144043	.	C	A	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.149;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=0.187;QD=12.36;ReadPosRankSum=1.501;SOR=0.877;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.99G>T|p.Leu33Phe|99/231|99/231|33/76||,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+562C>A||||||	GT:AD:DP:GQ:PL	0/1:21,25:46:99:597,0,613	scaffold3292_cov71	GLEAN	mRNA	143911	144141	0.97	-	.	ID=Soaet10008530
scaffold3292_cov71	144043	.	C	A	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.149;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=0.187;QD=12.36;ReadPosRankSum=1.501;SOR=0.877;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.99G>T|p.Leu33Phe|99/231|99/231|33/76||,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+562C>A||||||	GT:AD:DP:GQ:PL	0/1:21,25:46:99:597,0,613	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144052	.	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.124;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-0.777;QD=11.08;ReadPosRankSum=0.942;SOR=1.022;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.90C>T|p.Ser30Ser|90/231|90/231|30/76||,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+571G>A||||||	GT:AD:DP:GQ:PL	0/1:22,26:48:99:560,0,608	scaffold3292_cov71	GLEAN	mRNA	143911	144141	0.97	-	.	ID=Soaet10008530
scaffold3292_cov71	144052	.	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.124;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-0.777;QD=11.08;ReadPosRankSum=0.942;SOR=1.022;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.90C>T|p.Ser30Ser|90/231|90/231|30/76||,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+571G>A||||||	GT:AD:DP:GQ:PL	0/1:22,26:48:99:560,0,608	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144061	.	G	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-0.730;QD=11.34;ReadPosRankSum=0.054;SOR=0.914;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.81C>T|p.Ser27Ser|81/231|81/231|27/76||,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+580G>A||||||	GT:AD:DP:GQ:PL	0/1:21,26:47:99:561,0,586	scaffold3292_cov71	GLEAN	mRNA	143911	144141	0.97	-	.	ID=Soaet10008530
scaffold3292_cov71	144061	.	G	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-0.730;QD=11.34;ReadPosRankSum=0.054;SOR=0.914;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.81C>T|p.Ser27Ser|81/231|81/231|27/76||,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+580G>A||||||	GT:AD:DP:GQ:PL	0/1:21,26:47:99:561,0,586	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144101	.	T	C	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=0.424;QD=8.99;ReadPosRankSum=-0.944;SOR=1.278;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.41A>G|p.Gln14Arg|41/231|41/231|14/76||,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+620T>C||||||	GT:AD:DP:GQ:PL	0/1:26,18:44:99:424,0,719	scaffold3292_cov71	GLEAN	mRNA	143911	144141	0.97	-	.	ID=Soaet10008530
scaffold3292_cov71	144101	.	T	C	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=0.424;QD=8.99;ReadPosRankSum=-0.944;SOR=1.278;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.41A>G|p.Gln14Arg|41/231|41/231|14/76||,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+620T>C||||||	GT:AD:DP:GQ:PL	0/1:26,18:44:99:424,0,719	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144108	.	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;DP=37;Dels=0.00;ExcessHet=3.0103;FS=5.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=0.281;QD=7.26;ReadPosRankSum=0.243;SOR=1.855;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.34G>A|p.Val12Met|34/231|34/231|12/76||,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+627C>T||||||	GT:AD:DP:GQ:PL	0/1:25,12:37:99:297,0,686	scaffold3292_cov71	GLEAN	mRNA	143911	144141	0.97	-	.	ID=Soaet10008530
scaffold3292_cov71	144108	.	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;DP=37;Dels=0.00;ExcessHet=3.0103;FS=5.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=0.281;QD=7.26;ReadPosRankSum=0.243;SOR=1.855;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding|1/1|c.34G>A|p.Val12Met|34/231|34/231|12/76||,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+627C>T||||||	GT:AD:DP:GQ:PL	0/1:25,12:37:99:297,0,686	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144147	.	T	C	947.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=30.57;SOR=1.044;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-6A>G|||||6|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+666T>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:976,69,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144484	.	A	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DP=30;Dels=0.00;ExcessHet=3.0103;FS=8.783;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.03;ReadPosRankSum=1.203;SOR=0.045;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-343T>C|||||343|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1003A>G||||||	GT:AD:DP:GQ:PL	0/1:4,25:30:87:725,0,87	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144503	.	T	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;DP=32;Dels=0.00;ExcessHet=3.0103;FS=7.497;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.483;SOR=2.277;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-362A>T|||||362|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1022T>A||||||	GT:AD:DP:GQ:PL	0/1:26,6:32:99:137,0,728	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144512	.	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DP=30;Dels=0.00;ExcessHet=3.0103;FS=7.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.208;SOR=2.255;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-371G>A|||||371|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1031C>T||||||	GT:AD:DP:GQ:PL	0/1:24,6:30:99:140,0,608	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144518	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;DP=30;Dels=0.00;ExcessHet=3.0103;FS=10.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-0.343;SOR=2.555;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-377C>T|||||377|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1037G>A||||||	GT:AD:DP:GQ:PL	0/1:23,7:30:99:182,0,651	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144630	.	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.376;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-0.883;SOR=1.108;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-489A>G|||||489|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1149T>C||||||	GT:AD:DP:GQ:PL	0/1:30,11:41:99:322,0,731	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144703	.	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.090;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.509;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.032;SOR=0.742;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-562A>G|||||562|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1222T>C||||||	GT:AD:DP:GQ:PL	0/1:27,20:47:99:534,0,626	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144705	.	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.509;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.205;SOR=0.742;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-564C>T|||||564|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1224G>A||||||	GT:AD:DP:GQ:PL	0/1:27,20:47:99:530,0,718	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144718	.	G	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=49;Dels=0.00;ExcessHet=3.0103;FS=5.913;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-0.190;SOR=1.034;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-577C>T|||||577|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1237G>A||||||	GT:AD:DP:GQ:PL	0/1:26,23:49:99:650,0,710	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144730	.	T	TA	778.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DP=47;ExcessHet=3.0103;FS=8.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.93;ReadPosRankSum=0.618;SOR=1.017;ANN=TA|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-590_-589insT|||||590|,TA|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1249_152+1250insA||||||	GT:AD:DP:GQ:PL	0/1:25,21:47:99:816,0,998	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144768	.	A	G	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=52;Dels=0.00;ExcessHet=3.0103;FS=10.318;HaplotypeScore=4.7391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.018;SOR=1.613;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-627T>C|||||627|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1287A>G||||||	GT:AD:DP:GQ:PL	0/1:26,26:52:99:767,0,646	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144785	.	T	G	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.878;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.485;SOR=1.382;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-644A>C|||||644|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1304T>G||||||	GT:AD:DP:GQ:PL	0/1:26,28:54:99:739,0,681	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144847	.	A	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.858;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.67;ReadPosRankSum=0.722;SOR=0.330;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-706T>G|||||706|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1366A>C||||||	GT:AD:DP:GQ:PL	0/1:22,34:56:99:850,0,583	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144921	.	A	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DP=62;Dels=0.00;ExcessHet=3.0103;FS=12.793;HaplotypeScore=6.3596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.85;ReadPosRankSum=0.345;SOR=1.189;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-780T>C|||||780|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1440A>G||||||	GT:AD:DP:GQ:PL	0/1:25,36:62:99:934,0,544	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	144930	.	T	C	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;DP=64;Dels=0.00;ExcessHet=3.0103;FS=9.307;HaplotypeScore=9.1587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.12;ReadPosRankSum=-0.877;SOR=1.076;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-789A>G|||||789|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1449T>C||||||	GT:AD:DP:GQ:PL	0/1:27,37:64:99:932,0,714	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145015	.	A	G	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.903;HaplotypeScore=14.7297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.022;SOR=0.489;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-874T>C|||||874|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1534A>G||||||	GT:AD:DP:GQ:PL	0/1:40,33:73:99:874,0,1202	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145046	.	G	A	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.908;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-0.365;SOR=0.906;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-905C>T|||||905|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1565G>A||||||	GT:AD:DP:GQ:PL	0/1:38,35:73:99:958,0,1017	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145063	.	TG	T	909.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DP=72;ExcessHet=3.0103;FS=6.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.58;RPA=5,4;RU=G;ReadPosRankSum=0.631;SOR=1.516;STR;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-923delC|||||923|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1583delG||||||	GT:AD:DP:GQ:PL	0/1:37,30:72:99:947,0,1161	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145074	.	A	C	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=70;Dels=0.00;ExcessHet=3.0103;FS=10.822;HaplotypeScore=8.1989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.923;SOR=2.008;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-933T>G|||||933|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1593A>C||||||	GT:AD:DP:GQ:PL	0/1:39,31:70:99:930,0,1166	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145077	.	T	C	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DP=69;Dels=0.00;ExcessHet=3.0103;FS=8.979;HaplotypeScore=7.2831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.869;SOR=1.920;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-936A>G|||||936|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1596T>C||||||	GT:AD:DP:GQ:PL	0/1:38,31:69:99:900,0,1069	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145085	.	C	G	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DP=76;Dels=0.00;ExcessHet=3.0103;FS=10.604;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.75;ReadPosRankSum=1.040;SOR=1.981;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-944G>C|||||944|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1604C>G||||||	GT:AD:DP:GQ:PL	0/1:42,34:76:99:997,0,1214	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145098	.	G	C	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=78;Dels=0.00;ExcessHet=3.0103;FS=10.316;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=1;MQRankSum=0.000;QD=12.34;ReadPosRankSum=0.834;SOR=1.886;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-957C>G|||||957|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1617G>C||||||	GT:AD:DP:GQ:PL	0/1:42,36:78:99:991,0,1261	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145102	.	G	A	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;DP=80;Dels=0.00;ExcessHet=3.0103;FS=6.285;HaplotypeScore=3.7475;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=1;MQRankSum=0.964;QD=12.30;ReadPosRankSum=0.531;SOR=1.557;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-961C>T|||||961|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1621G>A||||||	GT:AD:DP:GQ:PL	0/1:42,38:80:99:1012,0,1191	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145139	.	T	C	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.241;HaplotypeScore=7.4108;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=1;MQRankSum=-1.036;QD=12.27;ReadPosRankSum=0.187;SOR=1.347;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-998A>G|||||998|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1658T>C||||||	GT:AD:DP:GQ:PL	0/1:46,42:88:99:1108,0,1208	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145160	.	A	G	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.052;HaplotypeScore=5.2409;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-0.944;QD=13.57;ReadPosRankSum=-1.737;SOR=0.830;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1019T>C|||||1019|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1679A>G||||||	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1236,0,1206	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145172	.	A	G	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.537;HaplotypeScore=6.1567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-1.614;SOR=0.754;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1031T>C|||||1031|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1691A>G||||||	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1094,0,1021	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145194	.	A	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=1;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-0.746;SOR=0.682;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1053T>C|||||1053|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1713A>G||||||	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1140,0,1133	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145210	.	T	A	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=1;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.472;SOR=0.776;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1069A>T|||||1069|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1729T>A||||||	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1161,0,1081	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145218	.	C	T	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=1;MQRankSum=0.000;QD=13.52;ReadPosRankSum=1.492;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1077G>A|||||1077|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1737C>T||||||	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1123,0,1106	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145219	.	C	T	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=1;MQRankSum=0.000;QD=12.98;ReadPosRankSum=1.507;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1078G>A|||||1078|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1738C>T||||||	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1080,0,1112	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145222	.	G	T	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=1;MQRankSum=0.000;QD=13.96;ReadPosRankSum=1.560;SOR=0.733;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1081C>A|||||1081|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1741G>T||||||	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1145,0,1091	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145259	.	A	AT	1091.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=70;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.60;ReadPosRankSum=2.266;SOR=1.022;ANN=AT|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1119_-1118insA|||||1119|,AT|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1778_152+1779insT||||||	GT:AD:DP:GQ:PL	0/1:37,33:70:99:1129,0,1433	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145260	.	A	G	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.095;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.76;ReadPosRankSum=2.809;SOR=1.077;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1119T>C|||||1119|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1779A>G||||||	GT:AD:DP:GQ:PL	0/1:37,31:68:99:964,0,993	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145267	.	T	A	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.968;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.947;SOR=1.022;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1126A>T|||||1126|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1786T>A||||||	GT:AD:DP:GQ:PL	0/1:33,34:67:99:954,0,915	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145296	.	C	T	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.260;HaplotypeScore=4.5355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.79;ReadPosRankSum=-2.787;SOR=1.041;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1155G>A|||||1155|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1815C>T||||||	GT:AD:DP:GQ:PL	0/1:24,35:59:99:1078,0,680	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145299	.	T	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.019;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.92;ReadPosRankSum=-2.757;SOR=0.919;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1158A>G|||||1158|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1818T>C||||||	GT:AD:DP:GQ:PL	0/1:25,37:62:99:1139,0,693	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145370	.	A	C	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.15;ReadPosRankSum=1.148;SOR=0.974;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1229T>G|||||1229|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1889A>C||||||	GT:AD:DP:GQ:PL	0/1:27,26:53:99:778,0,696	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145409	.	T	C	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.1399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-0.664;SOR=0.608;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1268A>G|||||1268|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1928T>C||||||	GT:AD:DP:GQ:PL	0/1:26,35:61:99:1043,0,563	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145432	.	T	C	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.835;SOR=0.709;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1291A>G|||||1291|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1951T>C||||||	GT:AD:DP:GQ:PL	0/1:27,34:61:99:946,0,604	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145453	.	T	G	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.102;HaplotypeScore=5.7462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.09;ReadPosRankSum=2.740;SOR=1.012;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1312A>C|||||1312|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1972T>G||||||	GT:AD:DP:GQ:PL	0/1:30,33:64:99:916,0,753	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145458	.	G	T	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.36;ReadPosRankSum=3.050;SOR=0.922;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1317C>A|||||1317|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1977G>T||||||	GT:AD:DP:GQ:PL	0/1:33,30:63:99:744,0,845	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145459	.	A	G	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.24;ReadPosRankSum=2.954;SOR=0.746;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1318T>C|||||1318|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+1978A>G||||||	GT:AD:DP:GQ:PL	0/1:32,33:65:99:954,0,808	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145499	.	A	G	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DP=75;Dels=0.00;ExcessHet=3.0103;FS=6.160;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.441;SOR=0.257;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1358T>C|||||1358|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2018A>G||||||	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1030,0,939	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145526	.	G	A	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;DP=68;Dels=0.00;ExcessHet=3.0103;FS=8.071;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-0.939;SOR=0.773;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1385C>T|||||1385|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2045G>A||||||	GT:AD:DP:GQ:PL	0/1:33,35:68:99:1006,0,908	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145535	.	T	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;DP=62;Dels=0.00;ExcessHet=3.0103;FS=5.105;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.169;SOR=0.622;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1394A>G|||||1394|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2054T>C||||||	GT:AD:DP:GQ:PL	0/1:31,31:62:99:874,0,901	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145637	.	T	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=41;Dels=0.00;ExcessHet=3.0103;FS=9.729;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.07;ReadPosRankSum=0.544;SOR=0.509;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1496A>G|||||1496|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2156T>C||||||	GT:AD:DP:GQ:PL	0/1:22,18:41:99:511,0,689	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145648	.	T	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.457;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.82;ReadPosRankSum=1.393;SOR=0.275;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1507A>C|||||1507|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2167T>G||||||	GT:AD:DP:GQ:PL	0/1:23,18:41:99:595,0,691	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145736	.	T	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-0.749;SOR=0.770;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1595A>G|||||1595|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2255T>C||||||	GT:AD:DP:GQ:PL	0/1:16,25:41:99:647,0,476	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145849	.	C	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.561;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.868;SOR=0.732;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1708G>A|||||1708|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2368C>T||||||	GT:AD:DP:GQ:PL	0/1:25,20:45:99:503,0,664	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145850	.	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.561;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.857;SOR=0.732;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1709A>G|||||1709|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2369T>C||||||	GT:AD:DP:GQ:PL	0/1:25,20:45:99:534,0,672	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145937	.	A	AT	1057.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DP=49;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.59;ReadPosRankSum=-1.365;SOR=1.255;ANN=AT|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1797_-1796insA|||||1797|,AT|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2456_152+2457insT||||||	GT:AD:DP:GQ:PL	0/1:21,28:49:99:1095,0,701	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145950	.	T	C	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.477;SOR=0.976;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1809A>G|||||1809|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2469T>C||||||	GT:AD:DP:GQ:PL	0/1:23,27:50:99:808,0,614	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	145976	.	T	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.192;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.19;ReadPosRankSum=1.218;SOR=1.101;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1835A>G|||||1835|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2495T>C||||||	GT:AD:DP:GQ:PL	0/1:18,27:45:99:802,0,510	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146109	.	A	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.131;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=60.21;MQ0=0;MQRankSum=1.143;QD=12.45;ReadPosRankSum=-1.193;SOR=1.047;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1968T>A|||||1968|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2628A>T||||||	GT:AD:DP:GQ:PL	0/1:28,23:51:99:663,0,698	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146120	.	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.512;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.057;QD=12.77;ReadPosRankSum=-2.118;SOR=1.372;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-1979A>G|||||1979|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2639T>C||||||	GT:AD:DP:GQ:PL	0/1:27,26:53:99:705,0,647	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146142	.	AG	A	922.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=57;ExcessHet=3.0103;FS=9.684;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.167;QD=16.19;ReadPosRankSum=0.539;SOR=1.531;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2002delC|||||2002|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2662delG||||||	GT:AD:DP:GQ:PL	0/1:32,25:57:99:960,0,1282	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146154	.	T	C	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.342;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.184;QD=11.70;ReadPosRankSum=1.492;SOR=1.330;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2013A>G|||||2013|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2673T>C||||||	GT:AD:DP:GQ:PL	0/1:33,25:58:99:707,0,869	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146190	.	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.084;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.198;QD=11.33;ReadPosRankSum=1.619;SOR=1.027;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2049T>C|||||2049|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2709A>G||||||	GT:AD:DP:GQ:PL	0/1:31,23:54:99:640,0,834	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146237	.	C	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.653;HaplotypeScore=4.7365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.64;ReadPosRankSum=-2.044;SOR=0.748;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2096G>T|||||2096|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2756C>A||||||	GT:AD:DP:GQ:PL	0/1:28,26:54:99:711,0,734	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146326	.	AG	A	807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;DP=49;ExcessHet=3.0103;FS=4.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.23;RPA=6,5;RU=G;ReadPosRankSum=-0.596;SOR=1.108;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2186delC|||||2186|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2846delG||||||	GT:AD:DP:GQ:PL	0/1:16,26:49:99:845,0,414	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146328	.	G	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.295;DP=49;Dels=0.00;ExcessHet=3.0103;FS=3.997;HaplotypeScore=6.7430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.93;ReadPosRankSum=0.485;SOR=1.128;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2187C>A|||||2187|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2847G>T||||||	GT:AD:DP:GQ:PL	0/1:21,28:49:99:858,0,539	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146340	.	C	T	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-0.562;SOR=0.756;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2199G>A|||||2199|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2859C>T||||||	GT:AD:DP:GQ:PL	0/1:16,31:47:99:792,0,410	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146462	.	T	C	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.048;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.64;ReadPosRankSum=0.965;SOR=0.495;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2321A>G|||||2321|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2981T>C||||||	GT:AD:DP:GQ:PL	0/1:34,22:56:99:512,0,984	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146469	.	A	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.238;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.610;SOR=0.595;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2328T>C|||||2328|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+2988A>G||||||	GT:AD:DP:GQ:PL	0/1:34,23:57:99:586,0,1011	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146483	.	T	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.814;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.157;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2342A>T|||||2342|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3002T>A||||||	GT:AD:DP:GQ:PL	0/1:32,24:56:99:676,0,919	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146579	.	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.904;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.799;SOR=1.108;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2438G>A|||||2438|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3098C>T||||||	GT:AD:DP:GQ:PL	0/1:30,23:53:99:500,0,785	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146588	.	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.434;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.146;SOR=0.625;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2447A>G|||||2447|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3107T>C||||||	GT:AD:DP:GQ:PL	0/1:24,26:50:99:731,0,512	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146650	.	C	T	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.896;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-0.417;SOR=1.289;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2509G>A|||||2509|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3169C>T||||||	GT:AD:DP:GQ:PL	0/1:31,14:45:99:334,0,836	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	146664	.	C	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.650;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.644;SOR=1.938;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-2523G>T|||||2523|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3183C>A||||||	GT:AD:DP:GQ:PL	0/1:27,10:37:99:217,0,762	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147262	.	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-1.302;QD=2.76;ReadPosRankSum=-2.138;SOR=1.329;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3121A>G|||||3121|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3781T>C||||||	GT:AD:DP:GQ:PL	0/1:15,3:18:78:78,0,471	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147332	.	T	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.510;HaplotypeScore=4.3250;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=0.093;QD=8.44;ReadPosRankSum=-0.156;SOR=1.651;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3191A>G|||||3191|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3851T>C||||||	GT:AD:DP:GQ:PL	0/1:26,14:40:99:366,0,682	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147362	.	C	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9446;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=0.509;QD=10.62;ReadPosRankSum=-1.133;SOR=0.847;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3221G>A|||||3221|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3881C>T||||||	GT:AD:DP:GQ:PL	0/1:27,24:51:99:570,0,748	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147418	.	C	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.293;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-1.309;SOR=1.112;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3277G>A|||||3277|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+3937C>T||||||	GT:AD:DP:GQ:PL	0/1:24,32:56:99:890,0,552	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147495	.	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-1.131;QD=12.60;ReadPosRankSum=-1.367;SOR=0.785;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3354A>G|||||3354|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4014T>C||||||	GT:AD:DP:GQ:PL	0/1:25,18:43:99:570,0,738	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147520	.	C	A	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.07;ReadPosRankSum=-0.188;SOR=0.529;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3379G>T|||||3379|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4039C>A||||||	GT:AD:DP:GQ:PL	0/1:15,24:39:99:811,0,393	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147560	.	T	A	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.446;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=-0.852;QD=15.81;ReadPosRankSum=0.615;SOR=0.260;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3419A>T|||||3419|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4079T>A||||||	GT:AD:DP:GQ:PL	0/1:15,18:33:99:550,0,383	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147561	.	C	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.093;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=-0.852;QD=15.57;ReadPosRankSum=0.705;SOR=0.260;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3420G>A|||||3420|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4080C>T||||||	GT:AD:DP:GQ:PL	0/1:15,18:33:99:542,0,415	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147599	.	C	CA	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;DP=42;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=0.000;QD=14.37;RPA=6,7;RU=A;ReadPosRankSum=0.442;SOR=0.811;STR;ANN=CA|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3459_-3458insT|||||3459|,CA|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4118_152+4119insA||||||	GT:AD:DP:GQ:PL	0/1:17,20:41:99:569,0,490	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147609	.	C	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-0.868;QD=14.48;ReadPosRankSum=0.076;SOR=0.811;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3468G>C|||||3468|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4128C>G||||||	GT:AD:DP:GQ:PL	0/1:17,20:37:99:564,0,391	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147657	.	G	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-0.054;SOR=0.701;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3516C>T|||||3516|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4176G>A||||||	GT:AD:DP:GQ:PL	0/1:19,21:40:99:506,0,507	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147742	.	T	C	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.214;QD=9.63;ReadPosRankSum=-0.941;SOR=0.973;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3601A>G|||||3601|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4261T>C||||||	GT:AD:DP:GQ:PL	0/1:27,17:44:99:452,0,727	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147785	.	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=-1.661;QD=10.72;ReadPosRankSum=-0.785;SOR=1.026;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3644G>A|||||3644|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4304C>T||||||	GT:AD:DP:GQ:PL	0/1:28,20:48:99:543,0,751	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147804	.	T	TTC	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=-1.276;QD=13.47;RPA=2,3;RU=TC;ReadPosRankSum=1.001;SOR=0.603;STR;ANN=TTC|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3664_-3663insGA|||||3664|,TTC|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4323_152+4324insTC||||||	GT:AD:DP:GQ:PL	0/1:28,16:45:99:630,0,1186	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147856	.	C	T	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.85;ReadPosRankSum=0.339;SOR=0.631;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3715G>A|||||3715|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4375C>T||||||	GT:AD:DP:GQ:PL	0/1:29,18:47:99:444,0,769	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147857	.	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.192;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3716T>C|||||3716|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4376A>G||||||	GT:AD:DP:GQ:PL	0/1:28,18:47:99:442,0,743	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147917	.	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-3.057;QD=8.51;ReadPosRankSum=0.359;SOR=0.892;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3776C>T|||||3776|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4436G>A||||||	GT:AD:DP:GQ:PL	0/1:22,13:35:99:326,0,581	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147935	.	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=-3.758;QD=9.75;ReadPosRankSum=-0.696;SOR=0.999;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3794T>C|||||3794|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4454A>G||||||	GT:AD:DP:GQ:PL	0/1:22,15:37:99:389,0,630	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	147979	.	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DP=40;Dels=0.00;ExcessHet=3.0103;FS=7.545;HaplotypeScore=8.5933;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=-4.443;QD=6.67;ReadPosRankSum=1.964;SOR=1.504;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3838G>A|||||3838|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4498C>T||||||	GT:AD:DP:GQ:PL	0/1:27,13:40:99:295,0,798	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148035	.	G	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.244;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-2.402;QD=10.30;ReadPosRankSum=-1.155;SOR=1.514;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3894C>A|||||3894|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4554G>T||||||	GT:AD:DP:GQ:PL	0/1:29,21:50:99:543,0,696	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148056	.	C	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.752;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=-1.960;QD=11.26;ReadPosRankSum=1.304;SOR=1.603;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-3915G>A|||||3915|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4575C>T||||||	GT:AD:DP:GQ:PL	0/1:29,23:52:99:614,0,735	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148179	.	A	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-1.334;SOR=0.708;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4038T>G|||||4038|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4698A>C||||||	GT:AD:DP:GQ:PL	0/1:21,21:42:99:648,0,589	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148255	.	A	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.812;HaplotypeScore=4.6036;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=-1.162;QD=10.17;ReadPosRankSum=1.266;SOR=0.780;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4114T>A|||||4114|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4774A>T||||||	GT:AD:DP:GQ:PL	0/1:33,23:58:99:598,0,914	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148304	.	G	A	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.175;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.73;ReadPosRankSum=-1.835;SOR=0.487;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4163C>T|||||4163|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4823G>A||||||	GT:AD:DP:GQ:PL	0/1:32,29:61:99:683,0,877	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148311	.	C	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.137;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-1.849;SOR=0.443;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4170G>T|||||4170|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4830C>A||||||	GT:AD:DP:GQ:PL	0/1:32,29:62:99:667,0,918	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148336	.	G	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-0.049;SOR=0.588;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4195C>T|||||4195|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4855G>A||||||	GT:AD:DP:GQ:PL	0/1:32,30:62:99:769,0,818	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148369	.	T	G	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.22;ReadPosRankSum=1.834;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4228A>C|||||4228|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4888T>G||||||	GT:AD:DP:GQ:PL	0/1:27,27:54:99:742,0,721	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148370	.	T	A	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=1.904;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4229A>T|||||4229|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4889T>A||||||	GT:AD:DP:GQ:PL	0/1:27,27:54:99:733,0,725	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148449	.	T	G	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-1.327;SOR=0.723;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4308A>C|||||4308|,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4968T>G||||||	GT:AD:DP:GQ:PL	0/1:17,27:44:99:647,0,417	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148453	.	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-1.057;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4312C>T|||||4312|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4972G>A||||||	GT:AD:DP:GQ:PL	0/1:16,25:41:99:646,0,387	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148468	.	TGGA	T	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=35;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.22;RPA=2,1;RU=GGA;ReadPosRankSum=0.968;SOR=1.071;STR;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4330_-4328delTCC|||||4328|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+4988_152+4990delGGA||||||	GT:AD:DP:GQ:PL	0/1:20,10:35:99:494,0,1078	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148516	.	G	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.74;ReadPosRankSum=1.687;SOR=0.252;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4375C>A|||||4375|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+5035G>T||||||	GT:AD:DP:GQ:PL	0/1:8,16:24:99:406,0,244	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148540	.	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.746;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.85;ReadPosRankSum=0.083;SOR=0.066;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4399C>T|||||4399|,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+5059G>A||||||	GT:AD:DP:GQ:PL	0/1:5,16:22:99:424,0,163	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	148562	.	C	T	548.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.28;SOR=1.739;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_143911_144141|GENE_EXON_scaffold3292_cov71_143911_144141|transcript|Soaet10008530|protein_coding||c.-4421G>A|||||4421|,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.152+5081C>T||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:42:577,42,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149479	.	A	C	15.65	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=0.674;QD=7.83;ReadPosRankSum=-0.674;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4634A>C||||||	GT:AD:DP:GQ:PL	1/1:1,1:2:3:42,3,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149501	.	C	A	15.65	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=0.674;QD=7.83;ReadPosRankSum=-0.674;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4612C>A||||||	GT:AD:DP:GQ:PL	1/1:1,1:2:3:42,3,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149530	.	C	A	134.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=0.674;QD=22.34;ReadPosRankSum=0.210;SOR=3.590;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4583C>A||||||	GT:AD:DP:GQ:PL	1/1:1,5:6:12:162,12,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149631	.	A	G	544.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.503;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=1.297;QD=24.76;ReadPosRankSum=0.946;SOR=1.326;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4482A>G||||||	GT:AD:DP:GQ:PL	1/1:1,21:22:6:572,6,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149652	.	G	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.718;HaplotypeScore=3.7475;MLEAC=1;MLEAF=0.500;MQ=50.53;MQ0=0;MQRankSum=0.211;QD=14.74;ReadPosRankSum=-0.381;SOR=1.244;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4461G>C||||||	GT:AD:DP:GQ:PL	0/1:10,14:24:99:382,0,249	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149653	.	T	A	722.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=28.91;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4460T>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:54:751,54,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149770	.	G	T	782.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=28.99;SOR=1.101;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4343G>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:28:57:811,57,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149905	.	A	C	854.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6467;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.14;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4208A>C||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:63:883,63,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	149948	.	G	A	746.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6581;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=3.426;QD=23.34;ReadPosRankSum=1.246;SOR=0.525;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4165G>A||||||	GT:AD:DP:GQ:PL	1/1:1,31:32:35:775,35,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150031	.	G	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.624;HaplotypeScore=5.8312;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=0;MQRankSum=4.800;QD=20.26;ReadPosRankSum=1.484;SOR=0.574;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4082G>A||||||	GT:AD:DP:GQ:PL	0/1:8,26:34:99:717,0,119	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150049	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-3.717;QD=2.09;ReadPosRankSum=-0.233;SOR=0.430;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4064C>T||||||	GT:AD:DP:GQ:PL	0/1:24,6:30:91:91,0,716	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150075	.	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7474;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=0;MQRankSum=-3.288;QD=3.67;ReadPosRankSum=0.872;SOR=0.709;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4038C>T||||||	GT:AD:DP:GQ:PL	0/1:22,9:31:99:142,0,654	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150098	.	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=0;MQRankSum=-2.500;QD=3.65;ReadPosRankSum=2.055;SOR=0.801;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4015C>T||||||	GT:AD:DP:GQ:PL	0/1:23,9:32:99:145,0,611	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150100	.	G	A	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9149;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=2.478;QD=16.57;ReadPosRankSum=-2.263;SOR=0.784;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-4013G>A||||||	GT:AD:DP:GQ:PL	0/1:10,21:31:99:542,0,184	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150154	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7423;MLEAC=1;MLEAF=0.500;MQ=48.73;MQ0=0;MQRankSum=-1.197;QD=4.19;ReadPosRankSum=-0.996;SOR=0.616;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3959C>T||||||	GT:AD:DP:GQ:PL	0/1:21,9:30:99:154,0,497	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150163	.	G	A	750.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5740;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=30.03;SOR=1.358;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3950G>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:57:779,57,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150167	.	C	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=47.00;MQ0=0;MQRankSum=1.508;QD=19.95;ReadPosRankSum=1.400;SOR=0.668;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3946C>T||||||	GT:AD:DP:GQ:PL	0/1:6,19:25:99:527,0,117	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150171	.	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=47.27;MQ0=0;MQRankSum=-1.206;QD=2.12;ReadPosRankSum=-0.996;SOR=0.515;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3942C>T||||||	GT:AD:DP:GQ:PL	0/1:19,5:24:79:79,0,497	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150196	.	G	GTCTC	1286.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=23.73;SOR=0.793;ANN=GTCTC|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3917_153-3916insTCTC||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:57:1324,57,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150314	.	C	G	642.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=1;QD=29.22;SOR=1.230;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3799C>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:48:671,48,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150526	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=27;Dels=0.00;ExcessHet=3.0103;FS=10.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQ0=0;MQRankSum=-5.018;QD=0.92;ReadPosRankSum=0.000;SOR=2.806;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3587G>A||||||	GT:AD:DP:GQ:PL	0/1:24,3:27:53:53,0,747	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150562	.	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DP=27;Dels=0.00;ExcessHet=3.0103;FS=9.748;HaplotypeScore=4.9128;MLEAC=1;MLEAF=0.500;MQ=55.94;MQ0=0;MQRankSum=-4.220;QD=2.21;ReadPosRankSum=0.957;SOR=3.252;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3551C>T||||||	GT:AD:DP:GQ:PL	0/1:23,4:27:88:88,0,717	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150563	.	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DP=27;Dels=0.00;ExcessHet=3.0103;FS=10.193;HaplotypeScore=4.9128;MLEAC=1;MLEAF=0.500;MQ=55.94;MQ0=0;MQRankSum=-4.818;QD=2.63;ReadPosRankSum=0.780;SOR=3.242;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3550C>A||||||	GT:AD:DP:GQ:PL	0/1:21,4:27:94:94,0,654	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150571	.	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.506;HaplotypeScore=16.9102;MLEAC=1;MLEAF=0.500;MQ=53.96;MQ0=0;MQRankSum=-3.412;QD=3.67;ReadPosRankSum=-2.802;SOR=3.185;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3542G>A||||||	GT:AD:DP:GQ:PL	0/1:25,6:31:99:142,0,834	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150572	.	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.576;HaplotypeScore=16.9102;MLEAC=1;MLEAF=0.500;MQ=53.96;MQ0=0;MQRankSum=-3.381;QD=1.44;ReadPosRankSum=1.298;SOR=2.336;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3541C>T||||||	GT:AD:DP:GQ:PL	0/1:27,4:31:73:73,0,914	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150573	.	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.576;HaplotypeScore=12.9116;MLEAC=1;MLEAF=0.500;MQ=53.96;MQ0=0;MQRankSum=-3.381;QD=1.44;ReadPosRankSum=1.269;SOR=2.336;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3540A>G||||||	GT:AD:DP:GQ:PL	0/1:27,4:31:73:73,0,918	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150591	.	T	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.642;HaplotypeScore=9.9125;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=-3.032;QD=1.14;ReadPosRankSum=1.578;SOR=2.542;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3522T>A||||||	GT:AD:DP:GQ:PL	0/1:30,4:34:67:67,0,995	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150593	.	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.642;HaplotypeScore=9.9125;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=-3.032;QD=1.14;ReadPosRankSum=1.417;SOR=2.542;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3520G>A||||||	GT:AD:DP:GQ:PL	0/1:30,4:34:67:67,0,1016	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150596	.	T	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.642;HaplotypeScore=9.9125;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=-3.032;QD=1.14;ReadPosRankSum=1.230;SOR=2.542;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3517T>G||||||	GT:AD:DP:GQ:PL	0/1:30,4:34:67:67,0,1014	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150601	.	T	TGAA	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=36;ExcessHet=3.0103;FS=14.094;MLEAC=1;MLEAF=0.500;MQ=53.19;MQ0=0;MQRankSum=-5.679;QD=17.63;RPA=1,2;RU=GAA;ReadPosRankSum=-0.357;SOR=2.985;STR;ANN=TGAA|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3512_153-3511insGAA||||||	GT:AD:DP:GQ:PL	0/1:22,14:36:99:672,0,1176	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150652	.	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.826;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=0;MQRankSum=-3.362;QD=1.18;ReadPosRankSum=-1.659;SOR=1.144;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3461G>A||||||	GT:AD:DP:GQ:PL	0/1:38,6:44:80:80,0,934	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150680	.	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.563;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=53.99;MQ0=0;MQRankSum=-3.539;QD=0.76;ReadPosRankSum=0.217;SOR=1.951;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3433C>T||||||	GT:AD:DP:GQ:PL	0/1:47,5:52:68:68,0,1124	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150688	.	G	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=50;Dels=0.00;ExcessHet=3.0103;FS=9.415;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=0;MQRankSum=-3.316;QD=0.75;ReadPosRankSum=1.380;SOR=3.258;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3425G>T||||||	GT:AD:DP:GQ:PL	0/1:44,4:50:64:64,0,1072	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150689	.	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=50;Dels=0.00;ExcessHet=3.0103;FS=9.545;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=0;MQRankSum=-3.245;QD=0.66;ReadPosRankSum=1.234;SOR=3.252;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3424C>T||||||	GT:AD:DP:GQ:PL	0/1:46,4:50:61:61,0,1101	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150706	.	A	C	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.538;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.05;MQ0=0;MQRankSum=-3.678;QD=0.51;ReadPosRankSum=0.730;SOR=1.970;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3407A>C||||||	GT:AD:DP:GQ:PL	0/1:47,5:52:55:55,0,1167	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150707	.	A	C	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;DP=53;Dels=0.00;ExcessHet=3.0103;FS=9.547;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=0;MQRankSum=-3.474;QD=0.45;ReadPosRankSum=1.213;SOR=3.250;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3406A>C||||||	GT:AD:DP:GQ:PL	0/1:49,4:53:52:52,0,1221	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150708	.	A	T	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;DP=53;Dels=0.00;ExcessHet=3.0103;FS=9.547;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=0;MQRankSum=-3.474;QD=0.45;ReadPosRankSum=1.229;SOR=3.250;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3405A>T||||||	GT:AD:DP:GQ:PL	0/1:49,4:53:52:52,0,1225	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150723	.	C	G	12.05	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=50;Dels=0.00;ExcessHet=3.0103;FS=8.698;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=1;MQRankSum=-4.406;QD=0.24;ReadPosRankSum=1.205;SOR=2.851;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3390C>G||||||	GT:AD:DP:GQ:PL	0/1:46,4:50:40:40,0,1275	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150737	.	C	A	17.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.332;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.39;MQ0=1;MQRankSum=-4.647;QD=0.39;ReadPosRankSum=-0.239;SOR=2.814;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3376C>A||||||	GT:AD:DP:GQ:PL	0/1:42,4:46:46:46,0,1268	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150770	.	G	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=1;MQRankSum=0.748;QD=12.58;ReadPosRankSum=0.483;SOR=0.590;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3343G>A||||||	GT:AD:DP:GQ:PL	0/1:24,19:43:99:569,0,710	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150804	.	T	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.636;HaplotypeScore=3.7475;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-1.838;QD=12.97;ReadPosRankSum=-0.610;SOR=0.962;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3309T>C||||||	GT:AD:DP:GQ:PL	0/1:21,19:40:99:547,0,700	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150831	.	A	T	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=-2.430;QD=12.43;ReadPosRankSum=-0.705;SOR=0.551;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3282A>T||||||	GT:AD:DP:GQ:PL	0/1:23,21:44:99:575,0,602	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150845	.	A	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=0;MQRankSum=-2.470;QD=10.36;ReadPosRankSum=-0.096;SOR=0.495;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3268A>G||||||	GT:AD:DP:GQ:PL	0/1:25,22:47:99:515,0,611	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150852	.	T	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=0;MQRankSum=-2.366;QD=12.02;ReadPosRankSum=-0.767;SOR=0.622;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3261T>A||||||	GT:AD:DP:GQ:PL	0/1:24,23:47:99:593,0,593	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150860	.	T	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-2.481;QD=11.57;ReadPosRankSum=-0.239;SOR=0.655;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3253T>G||||||	GT:AD:DP:GQ:PL	0/1:24,21:45:99:549,0,629	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150864	.	T	C	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-2.481;QD=10.55;ReadPosRankSum=-0.023;SOR=0.655;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3249T>C||||||	GT:AD:DP:GQ:PL	0/1:24,21:45:99:503,0,629	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	150938	.	GTT	G	1021.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DP=56;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=-2.383;QD=20.85;RPA=3,1;RU=T;ReadPosRankSum=0.271;SOR=0.552;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3174_153-3173delTT||||||	GT:AD:DP:GQ:PL	0/1:26,23:51:99:1059,0,1208	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151001	.	C	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.5676;MLEAC=1;MLEAF=0.500;MQ=54.68;MQ0=2;MQRankSum=1.129;QD=10.22;ReadPosRankSum=-0.035;SOR=0.936;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3112C>A||||||	GT:AD:DP:GQ:PL	0/1:36,21:57:99:611,0,775	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151034	.	C	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9346;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=2;MQRankSum=-0.073;QD=8.33;ReadPosRankSum=0.870;SOR=0.853;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3079C>A||||||	GT:AD:DP:GQ:PL	0/1:39,18:60:99:503,0,931	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151035	.	GA	G	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.09;MQ0=0;MQRankSum=-1.070;QD=12.05;ReadPosRankSum=1.045;SOR=0.545;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3077delA||||||	GT:AD:DP:GQ:PL	0/1:33,18:51:99:652,0,1346	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151110	.	C	T	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7042;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-0.790;QD=9.52;ReadPosRankSum=-1.952;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-3003C>T||||||	GT:AD:DP:GQ:PL	0/1:36,27:63:99:628,0,1087	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151135	.	A	G	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.282;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-2.797;QD=11.80;ReadPosRankSum=0.693;SOR=0.851;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2978A>G||||||	GT:AD:DP:GQ:PL	0/1:30,25:55:99:677,0,868	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151166	.	G	A	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=-4.089;QD=11.39;ReadPosRankSum=2.698;SOR=0.707;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2947G>A||||||	GT:AD:DP:GQ:PL	0/1:34,30:64:99:757,0,940	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151206	.	C	T	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.156;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-3.820;QD=13.23;ReadPosRankSum=-0.123;SOR=0.409;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2907C>T||||||	GT:AD:DP:GQ:PL	0/1:29,32:61:99:835,0,867	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151257	.	T	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.461;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=56.68;MQ0=1;MQRankSum=-4.351;QD=12.17;ReadPosRankSum=-0.643;SOR=0.363;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2856T>C||||||	GT:AD:DP:GQ:PL	0/1:27,24:51:99:649,0,780	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151273	.	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DP=50;Dels=0.00;ExcessHet=3.0103;FS=5.809;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=1;MQRankSum=-4.217;QD=10.50;ReadPosRankSum=0.556;SOR=0.422;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2840C>T||||||	GT:AD:DP:GQ:PL	0/1:28,22:50:99:553,0,791	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151295	.	G	A	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9074;MLEAC=1;MLEAF=0.500;MQ=56.61;MQ0=1;MQRankSum=-2.432;QD=11.26;ReadPosRankSum=0.499;SOR=0.610;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2818G>A||||||	GT:AD:DP:GQ:PL	0/1:25,20:45:99:535,0,695	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151362	.	G	C	1034.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=30.43;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2751G>C||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1063,75,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151411	.	C	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-0.729;SOR=0.671;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2702C>G||||||	GT:AD:DP:GQ:PL	0/1:15,19:34:99:486,0,469	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151418	.	T	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-0.494;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2695T>G||||||	GT:AD:DP:GQ:PL	0/1:16,20:36:99:518,0,501	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151443	.	C	A	1247.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.73;SOR=0.829;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2670C>A||||||	GT:AD:DP:GQ:PL	1/1:0,45:45:90:1276,90,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151456	.	C	A	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.569;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=1.135;QD=13.60;ReadPosRankSum=0.750;SOR=1.084;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2657C>A||||||	GT:AD:DP:GQ:PL	0/1:21,25:46:99:654,0,523	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151488	.	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=30.63;SOR=0.818;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2625T>C||||||	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1529,108,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151516	.	T	G	1461.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=30.45;SOR=0.866;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2597T>G||||||	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1490,108,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151559	.	TGTCGGAAATTG	T	1891.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.087;SOR=0.818;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2553_153-2543delGTCGGAAATTG||||||	GT:AD:DP:GQ:PL	0/1:24,15:46:99:1929,0,1919	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151597	.	A	G	1365.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.76;SOR=0.836;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2516A>G||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1394,99,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151635	.	C	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.30;ReadPosRankSum=0.196;SOR=0.602;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2478C>A||||||	GT:AD:DP:GQ:PL	0/1:19,24:43:99:729,0,443	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151651	.	G	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.281;HaplotypeScore=4.1978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-0.411;SOR=0.916;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2462G>T||||||	GT:AD:DP:GQ:PL	0/1:17,21:38:99:657,0,477	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151705	.	A	T	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.420;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.79;ReadPosRankSum=0.083;SOR=0.985;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2408A>T||||||	GT:AD:DP:GQ:PL	0/1:19,25:44:99:723,0,518	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151707	.	C	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.420;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.320;SOR=0.985;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2406C>T||||||	GT:AD:DP:GQ:PL	0/1:19,25:44:99:738,0,564	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151724	.	C	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.509;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.93;ReadPosRankSum=1.123;SOR=0.745;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2389C>A||||||	GT:AD:DP:GQ:PL	0/1:21,27:48:99:745,0,536	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151732	.	T	G	1569.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.40;SOR=0.735;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2381T>G||||||	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1598,117,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151746	.	C	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.795;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=1;MQRankSum=0.000;QD=14.14;ReadPosRankSum=1.197;SOR=0.967;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2367C>T||||||	GT:AD:DP:GQ:PL	0/1:18,23:41:99:608,0,577	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151826	.	T	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.49;ReadPosRankSum=0.298;SOR=0.490;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2287T>G||||||	GT:AD:DP:GQ:PL	0/1:14,20:34:99:589,0,389	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151829	.	T	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.552;HaplotypeScore=2.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.973;SOR=1.426;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2284T>G||||||	GT:AD:DP:GQ:PL	0/1:21,11:32:99:302,0,668	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151856	.	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.372;HaplotypeScore=15.9045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.17;ReadPosRankSum=2.006;SOR=1.426;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2257G>A||||||	GT:AD:DP:GQ:PL	0/1:15,13:28:99:369,0,434	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151859	.	C	CG	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;DP=28;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.76;RPA=1,2;RU=G;ReadPosRankSum=2.438;SOR=1.915;STR;ANN=CG|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2254_153-2253insG||||||	GT:AD:DP:GQ:PL	0/1:13,13:28:99:473,0,473	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151866	.	T	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.95;ReadPosRankSum=2.424;SOR=2.147;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2247T>C||||||	GT:AD:DP:GQ:PL	0/1:12,13:25:99:427,0,381	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151867	.	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.11;ReadPosRankSum=2.397;SOR=2.147;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2246G>A||||||	GT:AD:DP:GQ:PL	0/1:12,13:25:99:431,0,380	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151870	.	TC	T	476.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;DP=25;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.07;ReadPosRankSum=2.179;SOR=2.147;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2242delC||||||	GT:AD:DP:GQ:PL	0/1:12,13:25:99:514,0,452	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151874	.	C	T	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DP=26;Dels=0.00;ExcessHet=3.0103;FS=6.622;HaplotypeScore=14.3964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-1.519;SOR=0.105;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2239C>T||||||	GT:AD:DP:GQ:PL	0/1:14,12:26:99:386,0,438	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151876	.	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.084;HaplotypeScore=14.3964;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=1;MQRankSum=0.000;QD=14.26;ReadPosRankSum=1.261;SOR=2.030;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2237G>A||||||	GT:AD:DP:GQ:PL	0/1:12,14:26:99:399,0,392	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151919	.	G	GTTCGATTTTTTTCAAC	1821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;DP=26;ExcessHet=3.0103;FS=6.569;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-1.322;QD=14.85;ReadPosRankSum=-1.202;SOR=1.289;ANN=GTTCGATTTTTTTCAAC|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2194_153-2193insTTCGATTTTTTTCAAC||||||	GT:AD:DP:GQ:PL	0/1:11,12:25:99:1859,0,1824	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151952	.	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.916;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=0;MQRankSum=-1.531;QD=9.44;ReadPosRankSum=1.598;SOR=1.334;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2161G>A||||||	GT:AD:DP:GQ:PL	0/1:11,9:20:99:217,0,267	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151953	.	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.916;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=0;MQRankSum=-1.531;QD=9.64;ReadPosRankSum=1.637;SOR=1.334;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2160G>A||||||	GT:AD:DP:GQ:PL	0/1:11,9:20:99:221,0,267	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151959	.	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-1.322;QD=11.60;ReadPosRankSum=0.709;SOR=0.921;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2154C>T||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:295,0,261	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	151988	.	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=-0.870;QD=10.08;ReadPosRankSum=1.356;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2125G>A||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:260,0,257	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152059	.	C	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.320;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.34;ReadPosRankSum=-1.331;SOR=1.060;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2054C>A||||||	GT:AD:DP:GQ:PL	0/1:9,11:20:99:295,0,290	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152091	.	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;DP=15;Dels=0.00;ExcessHet=3.0103;FS=9.249;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.000;SOR=1.872;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2022A>G||||||	GT:AD:DP:GQ:PL	0/1:10,5:15:99:138,0,270	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152108	.	T	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=17;Dels=0.00;ExcessHet=3.0103;FS=8.141;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.831;SOR=1.447;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-2005T>C||||||	GT:AD:DP:GQ:PL	0/1:7,10:17:99:292,0,209	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152118	.	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-0.790;SOR=0.625;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1995T>C||||||	GT:AD:DP:GQ:PL	0/1:5,13:18:99:308,0,117	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152138	.	G	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.78;ReadPosRankSum=1.205;SOR=0.868;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1975G>C||||||	GT:AD:DP:GQ:PL	0/1:14,5:19:99:138,0,278	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152168	.	T	C	522.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.14;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1945T>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:21:39:551,39,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152201	.	A	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-0.821;SOR=0.446;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1912A>T||||||	GT:AD:DP:GQ:PL	0/1:14,7:21:99:168,0,348	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152208	.	A	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.825;SOR=1.329;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1905A>G||||||	GT:AD:DP:GQ:PL	0/1:6,14:20:99:338,0,133	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152230	.	T	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.616;SOR=0.991;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1883T>C||||||	GT:AD:DP:GQ:PL	0/1:8,13:21:99:337,0,203	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152263	.	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.957;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.178;SOR=1.015;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1850A>G||||||	GT:AD:DP:GQ:PL	0/1:10,8:18:99:211,0,251	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152290	.	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.873;SOR=0.787;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1823A>G||||||	GT:AD:DP:GQ:PL	0/1:13,7:20:99:208,0,264	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152363	.	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.79;ReadPosRankSum=1.362;SOR=0.412;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1750C>T||||||	GT:AD:DP:GQ:PL	0/1:10,10:20:99:224,0,246	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152382	.	T	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.660;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.16;ReadPosRankSum=2.145;SOR=1.093;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1731T>G||||||	GT:AD:DP:GQ:PL	0/1:11,13:24:99:320,0,252	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152391	.	A	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.40;ReadPosRankSum=1.938;SOR=0.946;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1722A>T||||||	GT:AD:DP:GQ:PL	0/1:9,13:23:99:301,0,256	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152392	.	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.834;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.08;ReadPosRankSum=2.017;SOR=1.015;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1721C>T||||||	GT:AD:DP:GQ:PL	0/1:10,13:23:99:329,0,248	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152402	.	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.43;ReadPosRankSum=2.083;SOR=0.870;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1711G>A||||||	GT:AD:DP:GQ:PL	0/1:11,14:25:99:339,0,255	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152421	.	T	C	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.046;SOR=1.244;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1692T>C||||||	GT:AD:DP:GQ:PL	0/1:12,16:28:99:420,0,281	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152429	.	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.512;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.35;ReadPosRankSum=0.534;SOR=1.109;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1684C>T||||||	GT:AD:DP:GQ:PL	0/1:12,16:28:99:402,0,315	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152453	.	C	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=4.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.210;SOR=1.371;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1660C>T||||||	GT:AD:DP:GQ:PL	0/1:11,16:27:99:413,0,280	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152454	.	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.312;SOR=0.495;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1659C>T||||||	GT:AD:DP:GQ:PL	0/1:22,5:27:72:72,0,615	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152455	.	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=4.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.44;ReadPosRankSum=-1.210;SOR=1.371;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1658G>A||||||	GT:AD:DP:GQ:PL	0/1:11,16:27:99:418,0,274	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152464	.	T	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=4.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.44;ReadPosRankSum=-1.309;SOR=1.371;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1649T>A||||||	GT:AD:DP:GQ:PL	0/1:11,16:27:99:418,0,286	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152511	.	T	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.22;ReadPosRankSum=1.243;SOR=0.760;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1602T>C||||||	GT:AD:DP:GQ:PL	0/1:16,19:35:99:491,0,434	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152512	.	T	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.067;SOR=0.735;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1601T>C||||||	GT:AD:DP:GQ:PL	0/1:20,16:36:99:428,0,502	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152514	.	T	C	1031.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.66;SOR=0.927;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1599T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:75:1060,75,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152558	.	T	TA	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=40;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.64;RPA=7,8;RU=A;ReadPosRankSum=-0.796;SOR=0.755;STR;ANN=TA|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1555_153-1554insA||||||	GT:AD:DP:GQ:PL	0/1:13,24:40:99:653,0,317	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152579	.	T	C	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.756;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.47;ReadPosRankSum=0.583;SOR=0.340;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1534T>C||||||	GT:AD:DP:GQ:PL	0/1:16,26:43:99:678,0,378	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152580	.	G	A	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.820;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.09;ReadPosRankSum=0.883;SOR=0.448;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1533G>A||||||	GT:AD:DP:GQ:PL	0/1:16,25:42:99:647,0,365	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152607	.	C	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.397;SOR=0.628;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1506C>T||||||	GT:AD:DP:GQ:PL	0/1:25,17:42:99:413,0,715	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152645	.	TATGTGAGAA	T	1432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;DP=35;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.41;RPA=3,2;RU=ATGTGAGAA;ReadPosRankSum=1.052;SOR=0.780;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1467_153-1459delATGTGAGAA||||||	GT:AD:DP:GQ:PL	0/1:17,14:35:99:1470,0,1761	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152689	.	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.454;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.68;ReadPosRankSum=-0.439;SOR=0.255;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1424T>C||||||	GT:AD:DP:GQ:PL	0/1:19,25:44:99:674,0,521	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152704	.	G	A	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.716;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.15;ReadPosRankSum=-1.474;SOR=0.293;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1409G>A||||||	GT:AD:DP:GQ:PL	0/1:20,25:45:99:755,0,554	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152723	.	A	C	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.00;ReadPosRankSum=-0.320;SOR=0.668;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1390A>C||||||	GT:AD:DP:GQ:PL	0/1:18,30:48:99:748,0,473	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152777	.	G	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.119;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.517;SOR=0.922;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1336G>A||||||	GT:AD:DP:GQ:PL	0/1:20,27:47:99:729,0,571	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152810	.	T	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.415;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.50;ReadPosRankSum=0.561;SOR=0.940;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1303T>A||||||	GT:AD:DP:GQ:PL	0/1:27,21:48:99:484,0,671	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152840	.	T	C	1327.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.51;SOR=1.280;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1273T>C||||||	GT:AD:DP:GQ:PL	1/1:0,45:45:96:1356,96,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152896	.	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.974;HaplotypeScore=81.1867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.40;ReadPosRankSum=1.790;SOR=0.270;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1217A>G||||||	GT:AD:DP:GQ:PL	0/1:18,21:39:99:629,0,493	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152899	.	GTATTCC	G	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=39;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.44;RPA=2,1;RU=TATTCC;ReadPosRankSum=-0.877;SOR=1.244;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1213_153-1208delTATTCC||||||	GT:AD:DP:GQ:PL	0/1:22,14:39:99:1077,0,1651	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152925	.	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.17;SOR=1.418;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1188G>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1156,81,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152942	.	C	CTGTTCTAACAGATACCGAACT	5104.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SOR=1.329;ANN=CTGTTCTAACAGATACCGAACT|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1171_153-1170insTGTTCTAACAGATACCGAACT||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:90:5142,90,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152956	.	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-0.401;SOR=0.551;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1157G>A||||||	GT:AD:DP:GQ:PL	0/1:9,13:22:99:295,0,256	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	152992	.	T	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=2;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-0.453;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1121T>A||||||	GT:AD:DP:GQ:PL	0/1:17,8:25:99:201,0,497	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153057	.	T	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=1;MQRankSum=0.000;QD=5.32;ReadPosRankSum=1.174;SOR=0.412;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1056T>G||||||	GT:AD:DP:GQ:PL	0/1:23,8:31:99:193,0,577	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153064	.	T	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=1;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.849;SOR=0.551;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1049T>C||||||	GT:AD:DP:GQ:PL	0/1:23,9:32:99:207,0,643	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153094	.	ATCACTGGGAC	A	1638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;DP=45;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.92;ReadPosRankSum=0.650;SOR=1.123;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1018_153-1009delTCACTGGGAC||||||	GT:AD:DP:GQ:PL	0/1:30,15:45:99:1676,0,3842	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153105	.	A	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.293;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.939;SOR=0.948;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-1008A>G||||||	GT:AD:DP:GQ:PL	0/1:30,15:45:99:407,0,759	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153216	.	A	T	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.994;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.68;ReadPosRankSum=0.483;SOR=0.467;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-897A>T||||||	GT:AD:DP:GQ:PL	0/1:30,36:66:99:931,0,707	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153219	.	A	C	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DP=69;Dels=0.00;ExcessHet=3.0103;FS=6.435;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.95;ReadPosRankSum=1.051;SOR=0.460;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-894A>C||||||	GT:AD:DP:GQ:PL	0/1:33,36:69:99:922,0,794	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153298	.	C	T	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.105;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.08;ReadPosRankSum=0.103;SOR=0.434;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-815C>T||||||	GT:AD:DP:GQ:PL	0/1:31,32:63:99:915,0,856	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153363	.	G	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.694;SOR=0.726;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-750G>T||||||	GT:AD:DP:GQ:PL	0/1:34,26:60:99:771,0,929	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153406	.	T	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.942;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-1.142;SOR=0.667;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-707T>A||||||	GT:AD:DP:GQ:PL	0/1:36,29:65:99:742,0,1037	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153703	.	C	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.64;ReadPosRankSum=2.325;SOR=0.779;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-410C>T||||||	GT:AD:DP:GQ:PL	0/1:37,28:65:99:785,0,1081	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153722	.	G	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.563;DP=69;Dels=0.00;ExcessHet=3.0103;FS=6.373;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.645;SOR=0.379;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-391G>A||||||	GT:AD:DP:GQ:PL	0/1:36,33:69:99:876,0,938	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153780	.	T	C	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.092;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.03;ReadPosRankSum=0.726;SOR=0.776;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-333T>C||||||	GT:AD:DP:GQ:PL	0/1:35,28:63:99:786,0,992	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153799	.	C	A	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.95;ReadPosRankSum=1.729;SOR=0.680;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-314C>A||||||	GT:AD:DP:GQ:PL	0/1:39,28:67:99:762,0,1145	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153825	.	T	G	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.937;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.21;ReadPosRankSum=1.112;SOR=0.549;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-288T>G||||||	GT:AD:DP:GQ:PL	0/1:41,28:69:99:802,0,1178	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153957	.	G	C	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.952;SOR=0.564;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-156G>C||||||	GT:AD:DP:GQ:PL	0/1:27,27:54:99:799,0,834	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153968	.	T	C	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.010;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.83;ReadPosRankSum=0.918;SOR=0.560;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-145T>C||||||	GT:AD:DP:GQ:PL	0/1:26,28:54:99:829,0,766	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	153992	.	T	C	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.12;ReadPosRankSum=0.319;SOR=0.765;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-121T>C||||||	GT:AD:DP:GQ:PL	0/1:23,24:47:99:692,0,683	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154034	.	C	A	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.379;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.82;ReadPosRankSum=-0.514;SOR=0.894;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|1/3|c.153-79C>A||||||	GT:AD:DP:GQ:PL	0/1:24,28:52:99:799,0,647	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154132	.	G	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.380;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=1;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.788;SOR=1.143;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/4|c.172G>A|p.Ala58Thr|172/654|172/654|58/217||	GT:AD:DP:GQ:PL	0/1:32,23:55:99:538,0,821	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154178	.	T	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.81;ReadPosRankSum=0.176;SOR=0.698;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/4|c.218T>A|p.Leu73His|218/654|218/654|73/217||	GT:AD:DP:GQ:PL	0/1:34,19:54:99:442,0,949	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154238	.	ATATG	A	1116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;DP=47;ExcessHet=3.0103;FS=4.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.82;ReadPosRankSum=-0.427;SOR=0.701;ANN=A|frameshift_variant|HIGH|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/4|c.280_283delATGT|p.Met94fs|280/654|280/654|94/217||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|1|1.00)	GT:AD:DP:GQ:PL	0/1:29,18:47:99:1154,0,1913	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154250	.	G	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.627;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.53;ReadPosRankSum=0.033;SOR=1.255;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/4|c.290G>C|p.Arg97Thr|290/654|290/654|97/217||	GT:AD:DP:GQ:PL	0/1:18,29:47:99:805,0,525	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154270	.	C	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.581;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.201;SOR=0.373;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+13C>A||||||	GT:AD:DP:GQ:PL	0/1:27,19:46:99:506,0,769	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154327	.	A	G	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.093;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.82;ReadPosRankSum=-0.155;SOR=0.454;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+70A>G||||||	GT:AD:DP:GQ:PL	0/1:17,17:34:99:430,0,557	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154350	.	T	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.96;ReadPosRankSum=0.230;SOR=0.467;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+93T>G||||||	GT:AD:DP:GQ:PL	0/1:14,14:28:99:391,0,512	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154359	.	AAAATCATATATACTAGAGAGCTCACAAATTCTACTG	A	2664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.135;DP=27;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.09;ReadPosRankSum=2.258;SOR=0.382;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+103_297+138delAAATCATATATACTAGAGAGCTCACAAATTCTACTG||||||	GT:AD:DP:GQ:PL	0/1:15,7:27:99:2702,0,4640	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154523	.	G	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.444;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-1.161;SOR=0.355;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+266G>C||||||	GT:AD:DP:GQ:PL	0/1:20,13:33:99:407,0,534	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154551	.	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.484;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=0.861;QD=7.51;ReadPosRankSum=-1.014;SOR=0.321;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+294C>T||||||	GT:AD:DP:GQ:PL	0/1:19,12:31:99:261,0,570	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154596	.	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4784;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=0.000;QD=9.64;ReadPosRankSum=1.719;SOR=0.519;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+339C>T||||||	GT:AD:DP:GQ:PL	0/1:24,15:40:99:404,0,702	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154823	.	G	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.561;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=0.891;QD=10.65;ReadPosRankSum=-2.039;SOR=0.887;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+566G>T||||||	GT:AD:DP:GQ:PL	0/1:24,17:41:99:465,0,697	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154844	.	A	G	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.706;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-1.763;SOR=0.732;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+587A>G||||||	GT:AD:DP:GQ:PL	0/1:23,15:38:99:377,0,663	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154850	.	A	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7449;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=1;MQRankSum=0.000;QD=13.79;ReadPosRankSum=1.240;SOR=0.675;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+593A>T||||||	GT:AD:DP:GQ:PL	0/1:16,23:39:99:566,0,408	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154858	.	A	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=1;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-0.837;SOR=0.732;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.297+601A>C||||||	GT:AD:DP:GQ:PL	0/1:24,15:39:99:473,0,603	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	154967	.	A	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.85;ReadPosRankSum=1.057;SOR=1.236;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-519A>G||||||	GT:AD:DP:GQ:PL	0/1:20,21:41:99:514,0,574	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155034	.	C	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;DP=42;Dels=0.00;ExcessHet=3.0103;FS=11.225;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.944;SOR=1.368;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-452C>G||||||	GT:AD:DP:GQ:PL	0/1:21,21:42:99:587,0,614	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155088	.	A	G	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.821;SOR=0.897;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-398A>G||||||	GT:AD:DP:GQ:PL	0/1:26,17:43:99:480,0,824	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155094	.	C	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;DP=42;Dels=0.00;ExcessHet=3.0103;FS=6.816;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-1.525;SOR=1.227;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-392C>G||||||	GT:AD:DP:GQ:PL	0/1:25,17:42:99:485,0,785	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155107	.	C	T	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.591;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-1.066;SOR=1.259;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-379C>T||||||	GT:AD:DP:GQ:PL	0/1:28,17:45:99:466,0,851	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155122	.	G	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.267;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-0.169;SOR=0.929;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-364G>T||||||	GT:AD:DP:GQ:PL	0/1:29,14:43:99:353,0,876	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155131	.	C	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.312;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.744;QD=7.60;ReadPosRankSum=-0.298;SOR=1.236;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-355C>T||||||	GT:AD:DP:GQ:PL	0/1:29,14:43:99:355,0,880	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155188	.	T	G	1113.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.81;SOR=0.957;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|2/3|c.298-298T>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:84:1142,84,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155534	.	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SOR=0.954;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/4|c.346G>A|p.Val116Met|346/654|346/654|116/217||	GT:AD:DP:GQ:PL	1/1:0,41:41:81:1134,81,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155549	.	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.53;SOR=0.941;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+5C>T||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:90:1255,90,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155625	.	C	A	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.204;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-0.327;SOR=0.928;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+81C>A||||||	GT:AD:DP:GQ:PL	0/1:21,21:42:99:628,0,618	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155665	.	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.177;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-0.934;QD=12.57;ReadPosRankSum=-0.670;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+121C>T||||||	GT:AD:DP:GQ:PL	0/1:22,23:45:99:594,0,606	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155687	.	C	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.512;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.04;ReadPosRankSum=0.160;SOR=0.382;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+143C>A||||||	GT:AD:DP:GQ:PL	0/1:25,24:49:99:716,0,744	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155701	.	A	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.093;HaplotypeScore=23.1456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-0.263;SOR=1.398;ANN=C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+157A>C||||||	GT:AD:DP:GQ:PL	0/1:23,27:50:99:805,0,667	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155710	.	TC	T	703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;DP=45;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.37;RPA=2,1;RU=C;ReadPosRankSum=-0.037;SOR=1.428;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+167delC||||||	GT:AD:DP:GQ:PL	0/1:20,23:45:99:741,0,719	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155714	.	T	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.602;SOR=1.476;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+170T>A||||||	GT:AD:DP:GQ:PL	0/1:22,23:45:99:704,0,615	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155719	.	T	G	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.584;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.60;ReadPosRankSum=0.352;SOR=1.560;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+175T>G||||||	GT:AD:DP:GQ:PL	0/1:22,24:46:99:792,0,554	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155752	.	C	T	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.408;SOR=0.606;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.356+208C>T||||||	GT:AD:DP:GQ:PL	0/1:26,35:61:99:929,0,704	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155798	.	A	G	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.95;ReadPosRankSum=1.823;SOR=0.539;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.357-213A>G||||||	GT:AD:DP:GQ:PL	0/1:30,36:66:99:949,0,811	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155889	.	C	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DP=55;Dels=0.00;ExcessHet=3.0103;FS=13.178;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.586;SOR=2.040;ANN=A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.357-122C>A||||||	GT:AD:DP:GQ:PL	0/1:35,20:55:99:548,0,1086	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155904	.	G	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;DP=62;Dels=0.00;ExcessHet=3.0103;FS=7.354;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.128;SOR=1.221;ANN=T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.357-107G>T||||||	GT:AD:DP:GQ:PL	0/1:39,22:61:99:614,0,1169	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	155920	.	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.616;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.238;SOR=1.238;ANN=G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|3/3|c.357-91A>G||||||	GT:AD:DP:GQ:PL	0/1:38,22:60:99:596,0,1106	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	156069	.	A	T	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;DP=57;Dels=0.00;ExcessHet=3.0103;FS=9.705;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.52;MQ0=0;MQRankSum=-2.986;QD=9.35;ReadPosRankSum=-1.083;SOR=1.418;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|4/4|c.415A>T|p.Lys139*|415/654|415/654|139/217||	GT:AD:DP:GQ:PL	0/1:33,24:57:99:561,0,1065	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	156077	.	T	A	1883.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=34.25;SOR=0.884;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|4/4|c.423T>A|p.Ala141Ala|423/654|423/654|141/217||	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1912,141,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	156116	.	C	T	1888.77	.	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=29.98;SOR=0.859;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|4/4|c.462C>T|p.Ser154Ser|462/654|462/654|154/217||	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1917,138,0	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	156174	.	A	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.945;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-4.257;QD=11.92;ReadPosRankSum=-0.588;SOR=0.627;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|4/4|c.520A>G|p.Thr174Ala|520/654|520/654|174/217||	GT:AD:DP:GQ:PL	0/1:37,29:66:99:815,0,983	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	156192	.	G	C	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=0;MQRankSum=-3.011;QD=12.06;ReadPosRankSum=0.615;SOR=0.876;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|4/4|c.538G>C|p.Ala180Pro|538/654|538/654|180/217||	GT:AD:DP:GQ:PL	0/1:35,25:61:99:752,0,1000	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	156203	.	G	A	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-2.996;QD=12.16;ReadPosRankSum=0.276;SOR=0.648;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_143330_143481|GENE_EXON_scaffold3292_cov71_143330_143481|transcript|Soaet10008529|protein_coding|4/4|c.549G>A|p.Leu183Leu|549/654|549/654|183/217||	GT:AD:DP:GQ:PL	0/1:34,29:63:99:794,0,1064	scaffold3292_cov71	GLEAN	mRNA	143330	156308	0.98	+	.	ID=Soaet10008529
scaffold3292_cov71	173262	.	C	T	635.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=31.79;SOR=1.721;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_173141_173599|GENE_EXON_scaffold3292_cov71_173141_173599|transcript|Soaet10008531|protein_coding|1/1|c.338G>A|p.Arg113His|338/459|338/459|113/152||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:664,48,0	scaffold3292_cov71	GLEAN	mRNA	173141	173599	0.97	-	.	ID=Soaet10008531
scaffold3292_cov71	173285	.	A	G	734.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=34.99;SOR=1.828;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_173141_173599|GENE_EXON_scaffold3292_cov71_173141_173599|transcript|Soaet10008531|protein_coding|1/1|c.315T>C|p.Phe105Phe|315/459|315/459|105/152||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:763,54,0	scaffold3292_cov71	GLEAN	mRNA	173141	173599	0.97	-	.	ID=Soaet10008531
scaffold3292_cov71	173373	.	CTT	C	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;DP=25;ExcessHet=3.0103;FS=9.558;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-0.467;QD=19.83;RPA=4,2;RU=T;ReadPosRankSum=-0.272;SOR=1.901;STR;ANN=C|frameshift_variant|HIGH|EXON_scaffold3292_cov71_173141_173599|GENE_EXON_scaffold3292_cov71_173141_173599|transcript|Soaet10008531|protein_coding|1/1|c.225_226delAA|p.Arg76fs|226/459|225/459|75/152||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold3292_cov71_173141_173599|GENE_EXON_scaffold3292_cov71_173141_173599|1|1.00)	GT:AD:DP:GQ:PL	0/1:13,12:25:99:533,0,565	scaffold3292_cov71	GLEAN	mRNA	173141	173599	0.97	-	.	ID=Soaet10008531
scaffold3292_cov71	180819	.	T	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=1.135;QD=12.02;ReadPosRankSum=0.254;SOR=0.655;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.106T>G|p.Tyr36Asp|106/699|106/699|36/232||,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*2080A>C|||||2080|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,25:46:99:581,0,587	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	180875	.	T	C	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.85;ReadPosRankSum=0.325;SOR=0.446;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.162T>C|p.Ile54Ile|162/699|162/699|54/232||,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*2024A>G|||||2024|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,28:47:99:773,0,590	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	180924	.	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.45;ReadPosRankSum=1.881;SOR=0.672;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.211A>G|p.Thr71Ala|211/699|211/699|71/232||,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1975T>C|||||1975|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:620,0,668	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	180948	.	A	G	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.134;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.74;ReadPosRankSum=0.437;SOR=0.490;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.235A>G|p.Ser79Gly|235/699|235/699|79/232||,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1951T>C|||||1951|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:674,0,783	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181050	.	C	A	1253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.644;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.29;ReadPosRankSum=0.281;SOR=1.051;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.337C>A|p.His113Asn|337/699|337/699|113/232||,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1849G>T|||||1849|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,44:65:99:1282,0,557	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181091	.	T	A	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.782;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-0.330;SOR=0.472;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.378T>A|p.Ile126Ile|378/699|378/699|126/232||,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1808A>T|||||1808|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,44:65:99:1262,0,479	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181099	.	C	T	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DP=62;Dels=0.00;ExcessHet=3.0103;FS=5.677;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.35;ReadPosRankSum=-0.611;SOR=0.242;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.386C>T|p.Ala129Val|386/699|386/699|129/232||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1800G>A|||||1800|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,43:62:99:1290,0,523	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181128	.	C	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.958;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.72;ReadPosRankSum=-0.280;SOR=0.304;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.415C>T|p.Arg139*|415/699|415/699|139/232||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1771G>A|||||1771|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,39:59:99:1074,0,554	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181142	.	G	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.38;ReadPosRankSum=-0.266;SOR=0.569;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/2|c.429G>A|p.Ser143Ser|429/699|429/699|143/232||,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1757C>T|||||1757|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,33:50:99:1047,0,462	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181240	.	C	G	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;DP=44;Dels=0.00;ExcessHet=3.0103;FS=14.507;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.11;ReadPosRankSum=0.356;SOR=1.905;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1659G>C|||||1659|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.436+91C>G||||||	GT:AD:DP:GQ:PL	0/1:25,19:44:99:561,0,811	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181241	.	G	C	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;DP=44;Dels=0.00;ExcessHet=3.0103;FS=12.044;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.439;SOR=1.905;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1658C>G|||||1658|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.436+92G>C||||||	GT:AD:DP:GQ:PL	0/1:25,19:44:99:519,0,806	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181243	.	T	C	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;DP=44;Dels=0.00;ExcessHet=3.0103;FS=8.695;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.119;SOR=1.535;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1656A>G|||||1656|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.436+94T>C||||||	GT:AD:DP:GQ:PL	0/1:25,19:44:99:527,0,776	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181283	.	A	G	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.429;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.12;ReadPosRankSum=0.085;SOR=1.421;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1616T>C|||||1616|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.436+134A>G||||||	GT:AD:DP:GQ:PL	0/1:25,30:55:99:805,0,788	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181356	.	C	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.892;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.61;ReadPosRankSum=0.143;SOR=0.693;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1543G>A|||||1543|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.436+207C>T||||||	GT:AD:DP:GQ:PL	0/1:26,36:62:99:934,0,740	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181512	.	A	G	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=1;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-1.780;SOR=0.602;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1387T>C|||||1387|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.437-133A>G||||||	GT:AD:DP:GQ:PL	0/1:41,32:73:99:910,0,972	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181547	.	C	T	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.910;HaplotypeScore=7.4108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.34;ReadPosRankSum=1.495;SOR=0.618;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1352G>A|||||1352|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.437-98C>T||||||	GT:AD:DP:GQ:PL	0/1:37,33:70:99:1032,0,974	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181555	.	G	A	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.667;SOR=0.749;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1344C>T|||||1344|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.437-90G>A||||||	GT:AD:DP:GQ:PL	0/1:37,36:73:99:1068,0,1002	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181561	.	G	A	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.957;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.00;ReadPosRankSum=0.992;SOR=0.471;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1338C>T|||||1338|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.437-84G>A||||||	GT:AD:DP:GQ:PL	0/1:31,37:68:99:1116,0,853	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181640	.	C	A	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.855;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.972;SOR=1.031;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|1/1|c.437-5C>A||||||,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1259G>T|||||1259|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1250,0,1088	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181751	.	A	ACAG	1687.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=64;ExcessHet=3.0103;FS=8.979;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.001;QD=27.22;ReadPosRankSum=0.543;SOR=1.124;ANN=ACAG|disruptive_inframe_insertion|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|2/2|c.545_546insGCA|p.Gln182dup|546/699|546/699|182/232||INFO_REALIGN_3_PRIME,ACAG|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1147_*1148insCTG|||||1147|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,32:64:99:1725,0,1627	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181881	.	T	C	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;DP=71;Dels=0.00;ExcessHet=3.0103;FS=6.837;HaplotypeScore=9.2344;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=0.812;QD=18.24;ReadPosRankSum=-1.694;SOR=1.273;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|2/2|c.673T>C|p.Leu225Leu|673/699|673/699|225/232||,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1018A>G|||||1018|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,44:71:99:1323,0,752	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181893	.	G	C	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;DP=64;Dels=0.00;ExcessHet=3.0103;FS=8.864;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=0.886;QD=17.67;ReadPosRankSum=-1.659;SOR=1.348;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|2/2|c.685G>C|p.Glu229Gln|685/699|685/699|229/232||,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*1006C>G|||||1006|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,37:64:99:1159,0,775	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	181902	.	A	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;DP=62;Dels=0.00;ExcessHet=3.0103;FS=11.413;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=0.883;QD=17.56;ReadPosRankSum=-1.784;SOR=1.449;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding|2/2|c.694A>T|p.Thr232Ser|694/699|694/699|232/232||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding||c.*997T>A|||||997|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,36:62:99:1117,0,718	scaffold3292_cov71	GLEAN	mRNA	180714	181907	0.98	+	.	ID=Soaet10008532
scaffold3292_cov71	182902	.	C	T	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.979;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.59;ReadPosRankSum=0.814;SOR=0.917;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.309G>A|p.Gln103Gln|309/312|309/312|103/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*995C>T|||||995|	GT:AD:DP:GQ:PL	0/1:28,34:62:99:933,0,805	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	182903	.	T	C	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.164;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.17;ReadPosRankSum=0.403;SOR=1.115;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.308A>G|p.Gln103Arg|308/312|308/312|103/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*996T>C|||||996|	GT:AD:DP:GQ:PL	0/1:27,36:63:99:984,0,805	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	182911	.	T	A	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.517;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.81;ReadPosRankSum=-1.550;SOR=1.292;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.300A>T|p.Lys100Asn|300/312|300/312|100/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1004T>A|||||1004|	GT:AD:DP:GQ:PL	0/1:26,40:66:99:1072,0,731	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	182951	.	G	A	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.073;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.78;ReadPosRankSum=-0.935;SOR=0.542;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.260C>T|p.Thr87Ile|260/312|260/312|87/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1044G>A|||||1044|	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1119,0,863	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183028	.	T	G	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.418;SOR=0.638;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.183A>C|p.Leu61Phe|183/312|183/312|61/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1121T>G|||||1121|	GT:AD:DP:GQ:PL	0/1:27,26:54:99:788,0,764	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183034	.	T	C	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=1.001;QD=14.29;ReadPosRankSum=0.390;SOR=0.588;ANN=C|stop_retained_variant|LOW|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.177A>G|p.Ter59Ter|177/312|177/312|59/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1127T>C|||||1127|	GT:AD:DP:GQ:PL	0/1:28,26:54:99:800,0,753	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183103	.	C	T	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.0231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.92;ReadPosRankSum=0.972;SOR=0.931;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.108G>A|p.Thr36Thr|108/312|108/312|36/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1196C>T|||||1196|	GT:AD:DP:GQ:PL	0/1:17,23:40:99:705,0,544	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183107	.	A	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.973;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.1914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.86;ReadPosRankSum=1.966;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.104T>C|p.Leu35Ser|104/312|104/312|35/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1200A>G|||||1200|	GT:AD:DP:GQ:PL	0/1:17,20:37:99:652,0,497	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183109	.	A	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.1072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.34;ReadPosRankSum=2.052;SOR=0.861;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.102T>C|p.Gly34Gly|102/312|102/312|34/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1202A>G|||||1202|	GT:AD:DP:GQ:PL	0/1:15,20:37:99:600,0,335	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183110	.	C	G	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.1072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.75;ReadPosRankSum=2.104;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.101G>C|p.Gly34Ala|101/312|101/312|34/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1203C>G|||||1203|	GT:AD:DP:GQ:PL	0/1:17,20:37:99:648,0,541	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183132	.	G	C	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.22;ReadPosRankSum=1.278;SOR=0.801;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.79C>G|p.Gln27Glu|79/312|79/312|27/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1225G>C|||||1225|	GT:AD:DP:GQ:PL	0/1:17,27:44:99:830,0,569	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183180	.	T	TG	922.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DP=51;ExcessHet=3.0103;FS=4.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.45;RPA=4,5;RU=G;ReadPosRankSum=1.506;SOR=1.040;STR;ANN=TG|frameshift_variant|HIGH|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.30dupC|p.Met11fs|30/312|30/312|10/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,TG|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1273_*1274insG|||||1274|;LOF=(EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|1|1.00)	GT:AD:DP:GQ:PL	0/1:20,30:51:99:960,0,619	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	183201	.	G	A	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.422;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.29;ReadPosRankSum=0.579;SOR=0.758;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_182899_183210|GENE_EXON_scaffold3292_cov71_182899_183210|transcript|Soaet10008533|protein_coding|1/1|c.10C>T|p.Leu4Leu|10/312|10/312|4/103||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_180714_181149|GENE_EXON_scaffold3292_cov71_180714_181149|transcript|Soaet10008532|protein_coding||c.*1294G>A|||||1294|	GT:AD:DP:GQ:PL	0/1:20,31:51:99:859,0,557	scaffold3292_cov71	GLEAN	mRNA	182899	183210	0.97	-	.	ID=Soaet10008533
scaffold3292_cov71	221221	.	C	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.1579;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-3.116;QD=0.68;ReadPosRankSum=1.883;SOR=0.646;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.8C>A|p.Thr3Asn|8/1557|8/1557|3/518||	GT:AD:DP:GQ:PL	0/1:39,8:48:60:60,0,1071	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221285	.	A	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.743;HaplotypeScore=17.1123;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=1;MQRankSum=0.900;QD=10.78;ReadPosRankSum=-1.115;SOR=0.488;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.72A>C|p.Lys24Asn|72/1557|72/1557|24/518||	GT:AD:DP:GQ:PL	0/1:26,20:49:99:524,0,749	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221304	.	A	G	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7798;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=-1.080;QD=14.47;ReadPosRankSum=-1.254;SOR=0.551;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.91A>G|p.Lys31Glu|91/1557|91/1557|31/518||	GT:AD:DP:GQ:PL	0/1:24,22:46:99:694,0,680	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221329	.	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.233;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-3.600;QD=1.39;ReadPosRankSum=-2.088;SOR=1.874;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.116G>A|p.Ser39Asn|116/1557|116/1557|39/518||	GT:AD:DP:GQ:PL	0/1:39,6:45:91:91,0,1141	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221341	.	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.091;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=-3.647;QD=1.60;ReadPosRankSum=-0.783;SOR=1.641;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.128T>C|p.Ile43Thr|128/1557|128/1557|43/518||	GT:AD:DP:GQ:PL	0/1:40,6:46:99:102,0,1224	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221369	.	T	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.128;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=-1.195;QD=16.40;ReadPosRankSum=1.528;SOR=1.051;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.156T>C|p.Asn52Asn|156/1557|156/1557|52/518||	GT:AD:DP:GQ:PL	0/1:22,30:52:99:881,0,603	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221381	.	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;DP=59;Dels=0.00;ExcessHet=3.0103;FS=4.097;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-2.638;QD=5.79;ReadPosRankSum=0.099;SOR=1.341;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.168C>T|p.Ser56Ser|168/1557|168/1557|56/518||	GT:AD:DP:GQ:PL	0/1:41,18:59:99:370,0,1137	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221400	.	T	A	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.032;HaplotypeScore=42.8715;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-1.333;QD=17.19;ReadPosRankSum=-0.889;SOR=1.049;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.187T>A|p.Ser63Thr|187/1557|187/1557|63/518||	GT:AD:DP:GQ:PL	0/1:23,39:62:99:1094,0,519	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221406	.	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.250;HaplotypeScore=43.7873;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=1.129;QD=5.73;ReadPosRankSum=-2.019;SOR=0.269;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.193A>G|p.Asn65Asp|193/1557|193/1557|65/518||	GT:AD:DP:GQ:PL	0/1:43,17:60:99:372,0,1186	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221420	.	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DP=66;Dels=0.00;ExcessHet=3.0103;FS=5.052;HaplotypeScore=16.8247;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=-2.444;QD=9.21;ReadPosRankSum=-0.039;SOR=1.453;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.207C>T|p.Thr69Thr|207/1557|207/1557|69/518||	GT:AD:DP:GQ:PL	0/1:39,27:66:99:636,0,1026	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221423	.	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.555;HaplotypeScore=16.8247;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=1.128;QD=5.69;ReadPosRankSum=-0.980;SOR=0.571;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.210C>T|p.Ser70Ser|210/1557|210/1557|70/518||	GT:AD:DP:GQ:PL	0/1:51,15:66:99:404,0,1219	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221429	.	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DP=67;Dels=0.00;ExcessHet=3.0103;FS=8.533;HaplotypeScore=14.9115;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-2.706;QD=9.41;ReadPosRankSum=-0.140;SOR=1.591;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.216C>T|p.Ser72Ser|216/1557|216/1557|72/518||	GT:AD:DP:GQ:PL	0/1:39,28:67:99:659,0,999	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221447	.	C	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.686;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=2;MQRankSum=1.284;QD=4.48;ReadPosRankSum=1.180;SOR=0.912;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.234C>T|p.Phe78Phe|234/1557|234/1557|78/518||	GT:AD:DP:GQ:PL	0/1:59,12:71:99:346,0,1366	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221452	.	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=2;MQRankSum=1.521;QD=4.02;ReadPosRankSum=1.353;SOR=0.936;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.239C>T|p.Pro80Leu|239/1557|239/1557|80/518||	GT:AD:DP:GQ:PL	0/1:62,12:74:99:326,0,1445	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221479	.	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.637;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.08;MQ0=2;MQRankSum=0.385;QD=3.94;ReadPosRankSum=0.440;SOR=1.160;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.266C>T|p.Ala89Val|266/1557|266/1557|89/518||	GT:AD:DP:GQ:PL	0/1:63,13:76:99:328,0,1455	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221520	.	C	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.7012;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=6;MQRankSum=3.534;QD=7.92;ReadPosRankSum=0.895;SOR=0.698;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.307C>T|p.Arg103*|307/1557|307/1557|103/518||;LOF=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00);NMD=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00)	GT:AD:DP:GQ:PL	0/1:43,20:63:99:527,0,1031	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221527	.	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.275;HaplotypeScore=14.6144;MLEAC=1;MLEAF=0.500;MQ=50.13;MQ0=7;MQRankSum=-0.514;QD=4.76;ReadPosRankSum=-1.470;SOR=0.908;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.314G>A|p.Gly105Asp|314/1557|314/1557|105/518||	GT:AD:DP:GQ:PL	0/1:46,14:60:99:314,0,1137	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221568	.	C	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.5678;MLEAC=1;MLEAF=0.500;MQ=45.67;MQ0=8;MQRankSum=-1.320;QD=1.69;ReadPosRankSum=1.423;SOR=0.896;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.355C>A|p.Pro119Thr|355/1557|355/1557|119/518||	GT:AD:DP:GQ:PL	0/1:33,10:44:99:101,0,813	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221577	.	A	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DP=40;Dels=0.00;ExcessHet=3.0103;FS=11.444;HaplotypeScore=9.4839;MLEAC=1;MLEAF=0.500;MQ=45.16;MQ0=8;MQRankSum=-5.217;QD=10.17;ReadPosRankSum=0.737;SOR=2.406;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.364A>G|p.Ile122Val|364/1557|364/1557|122/518||	GT:AD:DP:GQ:PL	0/1:17,23:40:99:435,0,413	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221579	.	T	C	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;DP=41;Dels=0.00;ExcessHet=3.0103;FS=11.357;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=8;MQRankSum=-5.161;QD=9.34;ReadPosRankSum=0.207;SOR=1.969;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.366T>C|p.Ile122Ile|366/1557|366/1557|122/518||	GT:AD:DP:GQ:PL	0/1:16,24:41:99:402,0,439	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221648	.	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=13.4332;MLEAC=1;MLEAF=0.500;MQ=44.43;MQ0=2;MQRankSum=-3.672;QD=10.08;ReadPosRankSum=-0.470;SOR=0.710;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.435C>T|p.Gly145Gly|435/1557|435/1557|145/518||	GT:AD:DP:GQ:PL	0/1:21,25:47:99:492,0,497	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221660	.	A	G	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.8402;MLEAC=1;MLEAF=0.500;MQ=44.08;MQ0=2;MQRankSum=-2.192;QD=8.46;ReadPosRankSum=-0.487;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.447A>G|p.Gly149Gly|447/1557|447/1557|149/518||	GT:AD:DP:GQ:PL	0/1:26,24:50:99:451,0,533	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221669	.	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.5257;MLEAC=1;MLEAF=0.500;MQ=44.85;MQ0=2;MQRankSum=-1.379;QD=0.90;ReadPosRankSum=-1.020;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.456C>T|p.Tyr152Tyr|456/1557|456/1557|152/518||	GT:AD:DP:GQ:PL	0/1:43,9:52:75:75,0,944	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221678	.	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.340;HaplotypeScore=36.6024;MLEAC=1;MLEAF=0.500;MQ=45.54;MQ0=1;MQRankSum=0.339;QD=3.10;ReadPosRankSum=0.478;SOR=1.358;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.465C>T|p.Ile155Ile|465/1557|465/1557|155/518||	GT:AD:DP:GQ:PL	0/1:41,9:51:99:183,0,762	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221682	.	G	GAAAAAAGT	1374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=0;MQRankSum=0.349;QD=13.22;RPA=1,2;RU=AAAAAAGT;ReadPosRankSum=-0.853;SOR=0.818;STR;ANN=GAAAAAAGT|frameshift_variant|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.476_483dupGTAAAAAA|p.Leu162fs|484/1557|484/1557|162/518||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00)	GT:AD:DP:GQ:PL	0/1:24,15:43:99:1412,0,2321	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221741	.	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.556;HaplotypeScore=2.5657;MLEAC=1;MLEAF=0.500;MQ=44.68;MQ0=3;MQRankSum=-1.180;QD=5.77;ReadPosRankSum=-1.762;SOR=0.990;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.528G>A|p.Gly176Gly|528/1557|528/1557|176/518||	GT:AD:DP:GQ:PL	0/1:36,18:54:99:340,0,811	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221759	.	A	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.266;HaplotypeScore=7.1998;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=3;MQRankSum=-3.799;QD=7.42;ReadPosRankSum=-1.579;SOR=1.187;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.546A>C|p.Gly182Gly|546/1557|546/1557|182/518||	GT:AD:DP:GQ:PL	0/1:25,22:47:99:377,0,623	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221780	.	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.421;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=3;MQRankSum=-2.528;QD=4.17;ReadPosRankSum=-0.968;SOR=1.172;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.567G>A|p.Lys189Lys|567/1557|567/1557|189/518||	GT:AD:DP:GQ:PL	0/1:29,12:41:99:199,0,720	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221791	.	C	T	840.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.550;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.153;HaplotypeScore=3.8630;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=3;MQRankSum=1.669;QD=22.73;ReadPosRankSum=0.793;SOR=0.175;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.578C>T|p.Ala193Val|578/1557|578/1557|193/518||	GT:AD:DP:GQ:PL	1/1:5,32:37:13:869,13,0	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221794	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;DP=37;Dels=0.00;ExcessHet=3.0103;FS=17.318;HaplotypeScore=3.8630;MLEAC=1;MLEAF=0.500;MQ=45.52;MQ0=3;MQRankSum=-2.157;QD=3.40;ReadPosRankSum=0.856;SOR=4.169;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.581C>T|p.Ala194Val|581/1557|581/1557|194/518||	GT:AD:DP:GQ:PL	0/1:29,8:37:99:154,0,634	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221822	.	G	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=32;Dels=0.00;ExcessHet=3.0103;FS=16.377;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=41.56;MQ0=3;MQRankSum=-1.602;QD=3.90;ReadPosRankSum=-0.434;SOR=4.170;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.609G>T|p.Met203Ile|609/1557|609/1557|203/518||	GT:AD:DP:GQ:PL	0/1:24,8:32:99:153,0,468	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221827	.	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;DP=26;Dels=0.00;ExcessHet=3.0103;FS=19.071;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=42.08;MQ0=1;MQRankSum=2.293;QD=13.99;ReadPosRankSum=1.091;SOR=1.243;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.614C>T|p.Ala205Val|614/1557|614/1557|205/518||	GT:AD:DP:GQ:PL	0/1:8,18:26:99:392,0,121	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221835	.	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;DP=23;Dels=0.00;ExcessHet=3.0103;FS=10.447;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=40.97;MQ0=1;MQRankSum=1.855;QD=16.86;ReadPosRankSum=0.353;SOR=0.651;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.622C>T|p.Arg208*|622/1557|622/1557|208/518||;LOF=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00);NMD=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00)	GT:AD:DP:GQ:PL	0/1:6,17:23:85:416,0,85	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221840	.	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;DP=23;Dels=0.00;ExcessHet=3.0103;FS=10.620;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=40.97;MQ0=1;MQRankSum=-1.665;QD=2.58;ReadPosRankSum=-0.413;SOR=3.601;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.627T>C|p.Ile209Ile|627/1557|627/1557|209/518||	GT:AD:DP:GQ:PL	0/1:16,6:23:85:85,0,383	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221847	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;DP=22;Dels=0.00;ExcessHet=3.0103;FS=9.874;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=41.40;MQ0=1;MQRankSum=-1.749;QD=2.85;ReadPosRankSum=-0.909;SOR=3.601;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.634C>T|p.Arg212*|634/1557|634/1557|212/518||;LOF=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00);NMD=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00)	GT:AD:DP:GQ:PL	0/1:16,6:22:91:91,0,332	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221902	.	G	A	12.05	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=37.34;MQ0=0;MQRankSum=0.278;QD=0.86;ReadPosRankSum=-0.183;SOR=1.802;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.689G>A|p.Ser230Asn|689/1557|689/1557|230/518||	GT:AD:DP:GQ:PL	0/1:12,2:14:40:40,0,283	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221912	.	C	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=35.13;MQ0=0;MQRankSum=0.503;QD=0.78;ReadPosRankSum=-0.792;SOR=2.030;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.699C>T|p.Leu233Leu|699/1557|699/1557|233/518||	GT:AD:DP:GQ:PL	0/1:11,2:13:38:38,0,257	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221949	.	A	G	157.9	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;QD=26.32;SOR=3.912;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.736A>G|p.Lys246Glu|736/1557|736/1557|246/518||	GT:AD:DP:GQ:PL	1/1:0,6:6:15:186,15,0	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	221977	.	G	A	99.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=0;QD=16.51;SOR=2.303;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/2|c.764G>A|p.Arg255Gln|764/1557|764/1557|255/518||	GT:AD:DP:GQ:PL	1/1:0,6:6:12:127,12,0	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230665	.	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.55;MQ0=0;MQRankSum=-0.871;QD=1.61;ReadPosRankSum=-1.696;SOR=0.781;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|1/1|c.768-3T>C||||||	GT:AD:DP:GQ:PL	0/1:16,5:21:62:62,0,388	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230716	.	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;DP=34;Dels=0.00;ExcessHet=3.0103;FS=13.366;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=41.57;MQ0=0;MQRankSum=-2.354;QD=6.26;ReadPosRankSum=-3.062;SOR=2.950;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.816T>C|p.Leu272Leu|816/1557|816/1557|272/518||	GT:AD:DP:GQ:PL	0/1:20,14:34:99:241,0,511	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230750	.	G	T	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DP=45;Dels=0.00;ExcessHet=3.0103;FS=5.368;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=42.87;MQ0=1;MQRankSum=2.544;QD=12.91;ReadPosRankSum=-0.404;SOR=1.060;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.850G>T|p.Gly284Trp|850/1557|850/1557|284/518||	GT:AD:DP:GQ:PL	0/1:21,24:45:99:609,0,281	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230813	.	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.672;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=42.33;MQ0=1;MQRankSum=-4.227;QD=11.36;ReadPosRankSum=0.664;SOR=1.400;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.913C>T|p.Arg305Cys|913/1557|913/1557|305/518||	GT:AD:DP:GQ:PL	0/1:13,28:41:99:494,0,408	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230815	.	C	T	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.388;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=41.71;MQ0=1;MQRankSum=-4.044;QD=12.02;ReadPosRankSum=0.487;SOR=1.336;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.915C>T|p.Arg305Arg|915/1557|915/1557|305/518||	GT:AD:DP:GQ:PL	0/1:12,27:39:99:497,0,344	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230881	.	C	T	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.174;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=44.94;MQ0=1;MQRankSum=-4.580;QD=13.82;ReadPosRankSum=-0.889;SOR=0.681;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.981C>T|p.Ile327Ile|981/1557|981/1557|327/518||	GT:AD:DP:GQ:PL	0/1:18,29:47:99:678,0,500	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230919	.	C	T	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=48;Dels=0.00;ExcessHet=3.0103;FS=6.153;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=50.93;MQ0=0;MQRankSum=-3.139;QD=14.35;ReadPosRankSum=-1.046;SOR=1.302;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1019C>T|p.Thr340Ile|1019/1557|1019/1557|340/518||	GT:AD:DP:GQ:PL	0/1:20,28:48:99:717,0,526	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230924	.	T	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DP=51;Dels=0.00;ExcessHet=3.0103;FS=10.159;HaplotypeScore=5.5792;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=0;MQRankSum=-2.741;QD=15.54;ReadPosRankSum=-0.799;SOR=1.339;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1024T>C|p.Phe342Leu|1024/1557|1024/1557|342/518||	GT:AD:DP:GQ:PL	0/1:22,29:51:99:821,0,540	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230938	.	T	A	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.796;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=52.56;MQ0=0;MQRankSum=-1.863;QD=16.44;ReadPosRankSum=-1.419;SOR=0.711;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1038T>A|p.Leu346Leu|1038/1557|1038/1557|346/518||	GT:AD:DP:GQ:PL	0/1:22,36:58:99:982,0,508	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	230969	.	T	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.26;MQ0=0;MQRankSum=1.327;QD=7.06;ReadPosRankSum=0.073;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1069T>C|p.Phe357Leu|1069/1557|1069/1557|357/518||	GT:AD:DP:GQ:PL	0/1:40,19:59:99:445,0,1075	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231009	.	T	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=-1.169;QD=6.17;ReadPosRankSum=0.428;SOR=0.648;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1109T>C|p.Phe370Ser|1109/1557|1109/1557|370/518||	GT:AD:DP:GQ:PL	0/1:34,13:47:99:318,0,931	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231065	.	G	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DP=46;Dels=0.00;ExcessHet=3.0103;FS=3.055;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.28;ReadPosRankSum=0.476;SOR=1.418;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1165G>A|p.Gly389Ser|1165/1557|1165/1557|389/518||	GT:AD:DP:GQ:PL	0/1:12,34:46:99:915,0,281	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231086	.	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=29.85;SOR=1.075;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1186T>C|p.Ser396Pro|1186/1557|1186/1557|396/518||	GT:AD:DP:GQ:PL	1/1:0,41:41:90:1252,90,0	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231120	.	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.476;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-1.562;QD=15.57;ReadPosRankSum=-0.227;SOR=1.072;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1220T>C|p.Phe407Ser|1220/1557|1220/1557|407/518||	GT:AD:DP:GQ:PL	0/1:14,24:38:99:620,0,453	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231126	.	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;DP=37;Dels=0.00;ExcessHet=3.0103;FS=7.360;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-1.597;QD=15.18;ReadPosRankSum=-0.204;SOR=0.959;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1226T>C|p.Ile409Thr|1226/1557|1226/1557|409/518||	GT:AD:DP:GQ:PL	0/1:14,23:37:99:590,0,460	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231173	.	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.420;HaplotypeScore=16.3800;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-2.688;QD=12.76;ReadPosRankSum=1.156;SOR=1.219;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1273G>A|p.Val425Met|1273/1557|1273/1557|425/518||	GT:AD:DP:GQ:PL	0/1:18,17:35:99:475,0,464	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231179	.	TG	T	617.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.717;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.341;QD=19.93;RPA=6,5;RU=G;ReadPosRankSum=-0.925;SOR=0.760;STR;ANN=T|frameshift_variant|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1285delG|p.Glu429fs|1285/1557|1285/1557|429/518||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00)	GT:AD:DP:GQ:PL	1/1:2,29:33:65:655,65,0	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231183	.	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DP=33;Dels=0.00;ExcessHet=3.0103;FS=7.702;HaplotypeScore=16.3800;MLEAC=1;MLEAF=0.500;MQ=58.13;MQ0=0;MQRankSum=-2.875;QD=10.69;ReadPosRankSum=1.284;SOR=0.846;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1283G>A|p.Gly428Glu|1283/1557|1283/1557|428/518||	GT:AD:DP:GQ:PL	0/1:18,15:33:99:381,0,479	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231185	.	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.418;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=-2.800;QD=11.27;ReadPosRankSum=0.793;SOR=0.868;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1285G>A|p.Glu429Lys|1285/1557|1285/1557|429/518||	GT:AD:DP:GQ:PL	0/1:17,15:32:99:389,0,476	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231199	.	T	TGAAAAGAA	1008.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=30;ExcessHet=3.0103;FS=8.613;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=0;MQRankSum=-3.331;QD=12.61;ReadPosRankSum=0.063;SOR=0.901;ANN=TGAAAAGAA|frameshift_variant|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1299_1300insGAAAAGAA|p.Lys434fs|1300/1557|1300/1557|434/518||;LOF=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00)	GT:AD:DP:GQ:PL	0/1:17,13:30:99:1046,0,1731	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231204	.	G	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.384;HaplotypeScore=5.8261;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=0;MQRankSum=-3.538;QD=5.76;ReadPosRankSum=1.948;SOR=0.760;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1304G>A|p.Arg435Lys|1304/1557|1304/1557|435/518||	GT:AD:DP:GQ:PL	0/1:22,12:34:99:224,0,645	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231211	.	A	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.449;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=-3.798;QD=9.82;ReadPosRankSum=-0.421;SOR=0.425;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1311A>T|p.Ile437Ile|1311/1557|1311/1557|437/518||	GT:AD:DP:GQ:PL	0/1:17,12:30:99:313,0,515	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231230	.	T	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.39;MQ0=0;MQRankSum=-4.550;QD=6.35;ReadPosRankSum=0.022;SOR=0.709;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1330T>C|p.Tyr444His|1330/1557|1330/1557|444/518||	GT:AD:DP:GQ:PL	0/1:22,9:31:99:225,0,654	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231256	.	C	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.178;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.7237;MLEAC=1;MLEAF=0.500;MQ=55.99;MQ0=0;MQRankSum=-5.098;QD=1.53;ReadPosRankSum=-0.505;SOR=1.473;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1356C>A|p.Ser452Ser|1356/1557|1356/1557|452/518||	GT:AD:DP:GQ:PL	0/1:21,7:28:71:71,0,663	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231264	.	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.7348;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=0;MQRankSum=1.866;QD=9.87;ReadPosRankSum=-0.708;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1364C>T|p.Pro455Leu|1364/1557|1364/1557|455/518||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:275,0,484	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231266	.	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.222;HaplotypeScore=13.6498;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=-4.804;QD=5.11;ReadPosRankSum=-0.541;SOR=1.206;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1366G>A|p.Gly456Arg|1366/1557|1366/1557|456/518||	GT:AD:DP:GQ:PL	0/1:19,6:25:99:156,0,578	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231267	.	G	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8186;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=2.180;QD=10.88;ReadPosRankSum=-1.213;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1367G>A|p.Gly456Glu|1367/1557|1367/1557|456/518||	GT:AD:DP:GQ:PL	0/1:16,10:26:99:311,0,445	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231320	.	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.630;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=53.15;MQ0=1;MQRankSum=-4.571;QD=8.83;ReadPosRankSum=-0.528;SOR=1.546;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1420G>A|p.Asp474Asn|1420/1557|1420/1557|474/518||	GT:AD:DP:GQ:PL	0/1:21,10:31:99:302,0,498	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231333	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;DP=32;Dels=0.00;ExcessHet=3.0103;FS=9.454;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.98;MQ0=1;MQRankSum=-4.704;QD=6.77;ReadPosRankSum=1.241;SOR=2.031;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1433C>T|p.Ala478Val|1433/1557|1433/1557|478/518||	GT:AD:DP:GQ:PL	0/1:23,9:32:99:245,0,596	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231347	.	TG	T	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;DP=27;ExcessHet=3.0103;FS=9.773;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=-3.747;QD=10.64;RPA=4,3;RU=G;ReadPosRankSum=0.198;SOR=1.447;STR;ANN=T|frameshift_variant|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1451delG|p.Gly484fs|1451/1557|1451/1557|484/518||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|1|1.00)	GT:AD:DP:GQ:PL	0/1:16,10:27:99:314,0,553	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231376	.	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DP=27;Dels=0.00;ExcessHet=3.0103;FS=8.916;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.30;MQ0=0;MQRankSum=-3.618;QD=13.47;ReadPosRankSum=0.170;SOR=0.899;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1476C>T|p.Phe492Phe|1476/1557|1476/1557|492/518||	GT:AD:DP:GQ:PL	0/1:14,13:27:99:392,0,425	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231395	.	A	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.608;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=55.93;MQ0=0;MQRankSum=-2.898;QD=15.64;ReadPosRankSum=-1.143;SOR=0.556;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1495A>C|p.Lys499Gln|1495/1557|1495/1557|499/518||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.-4984A>C|||||4984|	GT:AD:DP:GQ:PL	0/1:13,18:31:99:513,0,368	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231430	.	C	T	935.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=28.36;SOR=1.179;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1530C>T|p.Asn510Asn|1530/1557|1530/1557|510/518||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.-4949C>T|||||4949|	GT:AD:DP:GQ:PL	1/1:0,33:33:69:964,69,0	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	231434	.	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.479;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-0.868;QD=4.88;ReadPosRankSum=0.198;SOR=0.368;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_221214_221980|GENE_EXON_scaffold3292_cov71_221214_221980|transcript|Soaet10008534|protein_coding|2/2|c.1534C>T|p.Gln512*|1534/1557|1534/1557|512/518||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.-4945C>T|||||4945|	GT:AD:DP:GQ:PL	0/1:22,12:34:99:194,0,605	scaffold3292_cov71	GLEAN	mRNA	221214	231457	0.49	+	.	ID=Soaet10008534
scaffold3292_cov71	236574	.	T	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=55;Dels=0.00;ExcessHet=3.0103;FS=20.102;HaplotypeScore=7.4535;MLEAC=1;MLEAF=0.500;MQ=48.74;MQ0=3;MQRankSum=-6.159;QD=9.60;ReadPosRankSum=1.640;SOR=3.228;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|1/1|c.80-4T>C||||||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-1256T>C|||||1256|	GT:AD:DP:GQ:PL	0/1:30,25:55:99:556,0,794	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236595	.	A	G	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;DP=67;Dels=0.00;ExcessHet=3.0103;FS=15.767;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=3;MQRankSum=-6.308;QD=10.25;ReadPosRankSum=0.611;SOR=2.752;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.97A>G|p.Lys33Glu|97/684|97/684|33/227||,G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-1235A>G|||||1235|	GT:AD:DP:GQ:PL	0/1:32,35:67:99:715,0,835	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236712	.	A	G	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.985;HaplotypeScore=8.3164;MLEAC=1;MLEAF=0.500;MQ=53.51;MQ0=3;MQRankSum=-2.834;QD=8.48;ReadPosRankSum=1.003;SOR=1.041;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.214A>G|p.Arg72Gly|214/684|214/684|72/227||,G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-1118A>G|||||1118|	GT:AD:DP:GQ:PL	0/1:46,27:73:99:647,0,1250	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236714	.	A	G	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.980;HaplotypeScore=9.3163;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=4;MQRankSum=-2.879;QD=7.96;ReadPosRankSum=1.329;SOR=0.885;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.216A>G|p.Arg72Arg|216/684|216/684|72/227||,G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-1116A>G|||||1116|	GT:AD:DP:GQ:PL	0/1:49,25:74:99:617,0,1288	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236763	.	T	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.226;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=7;MQRankSum=-7.236;QD=6.42;ReadPosRankSum=-1.852;SOR=0.343;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.265T>A|p.Cys89Ser|265/684|265/684|89/227||,A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-1067T>A|||||1067|	GT:AD:DP:GQ:PL	0/1:49,32:81:99:548,0,1261	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236776	.	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=49.12;MQ0=7;MQRankSum=-5.282;QD=4.13;ReadPosRankSum=-1.325;SOR=0.708;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.278C>T|p.Pro93Leu|278/684|278/684|93/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-1054C>T|||||1054|	GT:AD:DP:GQ:PL	0/1:61,19:80:99:359,0,1352	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236834	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DP=79;Dels=0.00;ExcessHet=3.0103;FS=6.149;HaplotypeScore=5.6550;MLEAC=1;MLEAF=0.500;MQ=49.89;MQ0=6;MQRankSum=-3.259;QD=1.95;ReadPosRankSum=2.090;SOR=0.910;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.336G>A|p.Lys112Lys|336/684|336/684|112/227||,A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-996G>A|||||996|	GT:AD:DP:GQ:PL	0/1:59,20:79:99:182,0,1671	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236845	.	C	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;DP=77;Dels=0.00;ExcessHet=3.0103;FS=8.098;HaplotypeScore=20.3703;MLEAC=1;MLEAF=0.500;MQ=48.98;MQ0=6;MQRankSum=-3.031;QD=2.76;ReadPosRankSum=1.907;SOR=1.074;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.347C>T|p.Ala116Val|347/684|347/684|116/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-985C>T|||||985|	GT:AD:DP:GQ:PL	0/1:55,22:77:99:241,0,1558	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236848	.	C	T	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.975;HaplotypeScore=23.2244;MLEAC=1;MLEAF=0.500;MQ=48.13;MQ0=6;MQRankSum=-0.380;QD=9.73;ReadPosRankSum=1.266;SOR=0.976;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.350C>T|p.Ala117Val|350/684|350/684|117/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-982C>T|||||982|	GT:AD:DP:GQ:PL	0/1:35,37:72:99:729,0,943	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236874	.	A	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DP=64;Dels=0.00;ExcessHet=3.0103;FS=22.188;HaplotypeScore=27.5273;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=5;MQRankSum=2.337;QD=5.59;ReadPosRankSum=-3.083;SOR=3.108;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.376A>G|p.Met126Val|376/684|376/684|126/227||,G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-956A>G|||||956|	GT:AD:DP:GQ:PL	0/1:49,15:64:99:386,0,1151	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236876	.	G	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.332;HaplotypeScore=26.5281;MLEAC=1;MLEAF=0.500;MQ=47.88;MQ0=5;MQRankSum=-1.835;QD=2.60;ReadPosRankSum=1.270;SOR=0.946;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.378G>T|p.Met126Ile|378/684|378/684|126/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-954G>T|||||954|	GT:AD:DP:GQ:PL	0/1:44,19:63:99:192,0,1266	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236880	.	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.209;HaplotypeScore=25.5279;MLEAC=1;MLEAF=0.500;MQ=47.74;MQ0=4;MQRankSum=0.295;QD=4.98;ReadPosRankSum=1.559;SOR=1.112;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.382G>A|p.Ala128Thr|382/684|382/684|128/227||,A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-950G>A|||||950|	GT:AD:DP:GQ:PL	0/1:46,15:61:99:332,0,1130	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236901	.	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=45.36;MQ0=4;MQRankSum=-0.558;QD=4.24;ReadPosRankSum=-0.166;SOR=0.792;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.403C>T|p.Arg135*|403/684|403/684|135/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-929C>T|||||929|	GT:AD:DP:GQ:PL	0/1:38,16:54:99:257,0,941	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236956	.	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.53;MQ0=7;MQRankSum=-0.734;QD=1.26;ReadPosRankSum=-1.201;SOR=0.859;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.458G>A|p.Ser153Asn|458/684|458/684|153/227||,A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-874G>A|||||874|	GT:AD:DP:GQ:PL	0/1:35,10:45:85:85,0,859	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236966	.	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.378;HaplotypeScore=4.5654;MLEAC=1;MLEAF=0.500;MQ=43.81;MQ0=7;MQRankSum=-1.643;QD=1.35;ReadPosRankSum=-0.929;SOR=0.755;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.468C>T|p.Leu156Leu|468/684|468/684|156/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-864C>T|||||864|	GT:AD:DP:GQ:PL	0/1:36,9:45:89:89,0,843	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	236972	.	A	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DP=47;Dels=0.00;ExcessHet=3.0103;FS=7.496;HaplotypeScore=5.4077;MLEAC=1;MLEAF=0.500;MQ=43.75;MQ0=7;MQRankSum=-4.513;QD=2.23;ReadPosRankSum=0.487;SOR=0.674;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.474A>C|p.Ile158Ile|474/684|474/684|158/227||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-858A>C|||||858|	GT:AD:DP:GQ:PL	0/1:28,19:47:99:133,0,897	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237000	.	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.549;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=44.66;MQ0=4;MQRankSum=-1.366;QD=2.21;ReadPosRankSum=-0.396;SOR=1.302;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.502C>T|p.Pro168Ser|502/684|502/684|168/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-830C>T|||||830|	GT:AD:DP:GQ:PL	0/1:42,10:52:99:143,0,945	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237026	.	G	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.3749;MLEAC=1;MLEAF=0.500;MQ=45.75;MQ0=4;MQRankSum=5.496;QD=12.98;ReadPosRankSum=0.537;SOR=0.687;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.528G>C|p.Val176Val|528/684|528/684|176/227||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-804G>C|||||804|	GT:AD:DP:GQ:PL	0/1:27,25:52:99:703,0,343	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237029	.	C	A	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.7516;MLEAC=1;MLEAF=0.500;MQ=46.33;MQ0=4;MQRankSum=-5.739;QD=6.26;ReadPosRankSum=-0.454;SOR=0.560;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.531C>A|p.His177Gln|531/684|531/684|177/227||,A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-801C>A|||||801|	GT:AD:DP:GQ:PL	0/1:25,27:52:99:354,0,719	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237031	.	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;DP=50;Dels=0.00;ExcessHet=3.0103;FS=5.961;HaplotypeScore=20.7516;MLEAC=1;MLEAF=0.500;MQ=46.78;MQ0=4;MQRankSum=-4.875;QD=1.50;ReadPosRankSum=-1.074;SOR=1.492;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.533G>A|p.Arg178Gln|533/684|533/684|178/227||,A|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-799G>A|||||799|	GT:AD:DP:GQ:PL	0/1:35,15:50:99:103,0,952	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237038	.	G	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.707;HaplotypeScore=21.6675;MLEAC=1;MLEAF=0.500;MQ=48.08;MQ0=4;MQRankSum=-4.900;QD=1.32;ReadPosRankSum=-0.083;SOR=1.932;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.540G>C|p.Leu180Phe|540/684|540/684|180/227||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-792G>C|||||792|	GT:AD:DP:GQ:PL	0/1:38,14:52:97:97,0,1057	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237065	.	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.656;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=3;MQRankSum=-4.869;QD=0.59;ReadPosRankSum=3.445;SOR=1.512;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.567C>T|p.Tyr189Tyr|567/684|567/684|189/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-765C>T|||||765|	GT:AD:DP:GQ:PL	0/1:44,12:56:61:61,0,1235	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237116	.	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;DP=51;Dels=0.00;ExcessHet=3.0103;FS=9.044;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=52.50;MQ0=1;MQRankSum=-5.259;QD=0.80;ReadPosRankSum=-2.038;SOR=1.447;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.618C>T|p.Leu206Leu|618/684|618/684|206/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-714C>T|||||714|	GT:AD:DP:GQ:PL	0/1:41,10:51:69:69,0,1220	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237137	.	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.97;MQ0=1;MQRankSum=-5.684;QD=1.22;ReadPosRankSum=-2.691;SOR=0.469;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding|2/2|c.639C>T|p.Ser213Ser|639/684|639/684|213/227||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.-693C>T|||||693|	GT:AD:DP:GQ:PL	0/1:32,8:40:77:77,0,957	scaffold3292_cov71	GLEAN	mRNA	236379	237182	1.00	+	.	ID=Soaet10008535
scaffold3292_cov71	237901	.	A	C	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;DP=55;Dels=0.00;ExcessHet=3.0103;FS=10.652;HaplotypeScore=2.8309;MLEAC=1;MLEAF=0.500;MQ=57.59;MQ0=1;MQRankSum=-2.134;QD=16.90;ReadPosRankSum=-1.694;SOR=0.778;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.72A>C|p.Ser24Ser|72/1485|72/1485|24/494||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-4957A>C|||||4957|,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*719A>C|||||719|	GT:AD:DP:GQ:PL	0/1:20,35:55:99:958,0,543	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	237914	.	T	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;DP=60;Dels=0.00;ExcessHet=3.0103;FS=9.379;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=-1.940;QD=14.88;ReadPosRankSum=-0.008;SOR=0.915;ANN=C|missense_variant|MODERATE|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.85T>C|p.Ser29Pro|85/1485|85/1485|29/494||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-4944T>C|||||4944|,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*732T>C|||||732|	GT:AD:DP:GQ:PL	0/1:25,35:60:99:921,0,633	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	237934	.	T	G	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.919;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-0.812;QD=15.10;ReadPosRankSum=0.013;SOR=0.689;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.105T>G|p.Phe35Leu|105/1485|105/1485|35/494||,G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-4924T>G|||||4924|,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*752T>G|||||752|	GT:AD:DP:GQ:PL	0/1:27,38:66:99:1010,0,691	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	238153	.	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;DP=28;Dels=0.00;ExcessHet=3.0103;FS=10.193;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=1;MQRankSum=-3.645;QD=2.31;ReadPosRankSum=-1.875;SOR=3.603;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.324C>T|p.Gly108Gly|324/1485|324/1485|108/494||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-4705C>T|||||4705|,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*971C>T|||||971|	GT:AD:DP:GQ:PL	0/1:23,5:28:93:93,0,695	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	238160	.	T	C	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DP=28;Dels=0.00;ExcessHet=3.0103;FS=10.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-4.345;QD=0.57;ReadPosRankSum=-1.511;SOR=3.240;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.331T>C|p.Leu111Leu|331/1485|331/1485|111/494||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-4698T>C|||||4698|,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*978T>C|||||978|	GT:AD:DP:GQ:PL	0/1:24,4:28:44:44,0,809	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	238441	.	A	G	619.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=27.07;SOR=1.061;ANN=G|synonymous_variant|LOW|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.612A>G|p.Leu204Leu|612/1485|612/1485|204/494||,G|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-4417A>G|||||4417|,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*1259A>G|||||1259|	GT:AD:DP:GQ:PL	1/1:0,17:17:48:648,48,0	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	238465	.	T	C	650.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.92;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.636T>C|p.Thr212Thr|636/1485|636/1485|212/494||,C|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-4393T>C|||||4393|,C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*1283T>C|||||1283|	GT:AD:DP:GQ:PL	1/1:0,18:18:48:679,48,0	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	239269	.	A	T	493.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=35.33;SOR=1.329;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding|1/1|c.1440A>T|p.Thr480Thr|1440/1485|1440/1485|480/494||,T|upstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding||c.-3589A>T|||||3589|,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_236379_236457|GENE_EXON_scaffold3292_cov71_236379_236457|transcript|Soaet10008535|protein_coding||c.*2087A>T|||||2087|	GT:AD:DP:GQ:PL	1/1:0,14:14:39:522,39,0	scaffold3292_cov71	GLEAN	mRNA	237830	239314	1.00	+	.	ID=Soaet10008536
scaffold3292_cov71	243053	.	C	T	807.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=1;MQRankSum=2.706;QD=25.24;ReadPosRankSum=1.680;SOR=0.278;ANN=T|stop_gained|HIGH|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|1/2|c.196C>T|p.Arg66*|196/1128|196/1128|66/375||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*3739C>T|||||3739|;LOF=(EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|1|1.00);NMD=(EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|1|1.00)	GT:AD:DP:GQ:PL	1/1:2,30:32:26:836,26,0	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243060	.	A	G	17.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.429;HaplotypeScore=3.7475;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=2;MQRankSum=-4.099;QD=0.50;ReadPosRankSum=-2.970;SOR=3.258;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|1/2|c.203A>G|p.Asp68Gly|203/1128|203/1128|68/375||,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*3746A>G|||||3746|	GT:AD:DP:GQ:PL	0/1:30,6:36:46:46,0,794	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243093	.	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.344;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=2;MQRankSum=3.233;QD=10.31;ReadPosRankSum=0.147;SOR=0.470;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|1/2|c.236C>T|p.Ser79Phe|236/1128|236/1128|79/375||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*3779C>T|||||3779|	GT:AD:DP:GQ:PL	0/1:26,19:45:99:492,0,639	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243181	.	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.67;MQ0=2;MQRankSum=-4.197;QD=3.95;ReadPosRankSum=-0.044;SOR=0.495;ANN=T|synonymous_variant|LOW|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|1/2|c.324C>T|p.Gly108Gly|324/1128|324/1128|108/375||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*3867C>T|||||3867|	GT:AD:DP:GQ:PL	0/1:25,16:41:99:190,0,753	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243207	.	A	G	1032.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=27.91;SOR=1.121;ANN=G|missense_variant|MODERATE|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|1/2|c.350A>G|p.Lys117Arg|350/1128|350/1128|117/375||,G|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*3893A>G|||||3893|	GT:AD:DP:GQ:PL	1/1:0,37:37:75:1061,75,0	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243316	.	C	T	853.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=32.84;SOR=0.693;ANN=T|splice_region_variant&synonymous_variant|LOW|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|1/2|c.459C>T|p.Phe153Phe|459/1128|459/1128|153/375||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*4002C>T|||||4002|	GT:AD:DP:GQ:PL	1/1:0,26:26:66:882,66,0	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243368	.	T	C	808.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=31.11;SOR=1.220;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*4054T>C|||||4054|,C|intron_variant|MODIFIER|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|1/1|c.460+51T>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:837,60,0	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243435	.	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-0.968;QD=11.96;ReadPosRankSum=-0.910;SOR=0.986;ANN=A|missense_variant|MODERATE|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|2/2|c.476G>A|p.Ser159Asn|476/1128|476/1128|159/375||,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*4121G>A|||||4121|	GT:AD:DP:GQ:PL	0/1:16,15:31:99:399,0,440	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243490	.	G	A	929.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SOR=0.892;ANN=A|synonymous_variant|LOW|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|2/2|c.531G>A|p.Val177Val|531/1128|531/1128|177/375||,A|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*4176G>A|||||4176|	GT:AD:DP:GQ:PL	1/1:0,31:31:69:958,69,0	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3292_cov71	243513	.	C	T	891.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=2;QD=28.77;SOR=1.071;ANN=T|missense_variant|MODERATE|EXON_scaffold3292_cov71_242858_243317|GENE_EXON_scaffold3292_cov71_242858_243317|transcript|Soaet10008537|protein_coding|2/2|c.554C>T|p.Thr185Ile|554/1128|554/1128|185/375||,T|downstream_gene_variant|MODIFIER|EXON_scaffold3292_cov71_237830_239314|GENE_EXON_scaffold3292_cov71_237830_239314|transcript|Soaet10008536|protein_coding||c.*4199C>T|||||4199|	GT:AD:DP:GQ:PL	1/1:2,29:31:69:920,69,0	scaffold3292_cov71	GLEAN	mRNA	242858	244087	1.00	+	.	ID=Soaet10008537
scaffold3818_cov65	1018	.	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-4.296;QD=5.67;ReadPosRankSum=0.318;SOR=0.848;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.190A>G|p.Ile64Val|190/53802|190/53802|64/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,11:40:99:255,0,853	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	1024	.	C	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=0;MQRankSum=-4.228;QD=6.12;ReadPosRankSum=-0.219;SOR=0.760;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.196C>A|p.Gln66Lys|196/53802|196/53802|66/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,11:39:99:267,0,860	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	1063	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=0;MQRankSum=-5.033;QD=3.32;ReadPosRankSum=-0.645;SOR=3.334;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.235G>A|p.Asp79Asn|235/53802|235/53802|79/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,5:31:99:131,0,799	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	1081	.	A	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DP=29;Dels=0.00;ExcessHet=3.0103;FS=8.994;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.80;MQ0=0;MQRankSum=-4.863;QD=3.65;ReadPosRankSum=-2.254;SOR=3.312;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.253A>T|p.Arg85Trp|253/53802|253/53802|85/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,5:29:99:134,0,677	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2192	.	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.899;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=2;MQRankSum=-4.641;QD=1.54;ReadPosRankSum=0.463;SOR=1.550;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1364G>A|p.Arg455Lys|1364/53802|1364/53802|455/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,9:42:93:93,0,1032	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2193	.	A	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.899;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=2;MQRankSum=-4.575;QD=1.92;ReadPosRankSum=0.385;SOR=1.567;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1365A>T|p.Arg455Ser|1365/53802|1365/53802|455/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,9:41:99:107,0,984	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2206	.	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.893;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=2;MQRankSum=-4.756;QD=1.90;ReadPosRankSum=0.818;SOR=1.815;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1378A>G|p.Thr460Ala|1378/53802|1378/53802|460/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,10:41:99:106,0,919	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2221	.	G	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.363;HaplotypeScore=5.7139;MLEAC=1;MLEAF=0.500;MQ=54.72;MQ0=2;MQRankSum=-2.318;QD=1.22;ReadPosRankSum=0.654;SOR=1.755;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1393G>T|p.Gly465Trp|1393/53802|1393/53802|465/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,7:35:71:71,0,877	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2223	.	G	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.741;HaplotypeScore=7.7136;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=2;MQRankSum=-4.395;QD=2.44;ReadPosRankSum=0.631;SOR=1.627;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1395G>T|p.Gly465Gly|1395/53802|1395/53802|465/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,10:36:99:116,0,850	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2225	.	A	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=6.7978;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=2;MQRankSum=-4.395;QD=2.58;ReadPosRankSum=0.753;SOR=1.627;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1397A>C|p.Tyr466Ser|1397/53802|1397/53802|466/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,10:36:99:121,0,751	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2229	.	G	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.741;HaplotypeScore=9.7640;MLEAC=1;MLEAF=0.500;MQ=55.01;MQ0=2;MQRankSum=-4.470;QD=2.29;ReadPosRankSum=1.142;SOR=1.525;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1401G>T|p.Arg467Ser|1401/53802|1401/53802|467/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,10:37:99:113,0,880	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2231	.	A	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=8.8482;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=2;MQRankSum=-4.544;QD=2.23;ReadPosRankSum=1.583;SOR=1.643;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1403A>T|p.Tyr468Phe|1403/53802|1403/53802|468/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,10:38:99:113,0,924	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2235	.	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=6.7978;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=2;MQRankSum=-4.544;QD=2.13;ReadPosRankSum=1.638;SOR=1.643;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1407C>T|p.Asn469Asn|1407/53802|1407/53802|469/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,10:38:99:109,0,921	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2237	.	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.247;HaplotypeScore=6.7978;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=2;MQRankSum=-2.483;QD=1.07;ReadPosRankSum=1.764;SOR=1.675;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1409C>G|p.Thr470Ser|1409/53802|1409/53802|470/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,7:38:69:69,0,915	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2335	.	T	C	29.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.96;MQ0=2;MQRankSum=-3.186;QD=1.06;ReadPosRankSum=-0.365;SOR=0.473;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1507T>C|p.Cys503Arg|1507/53802|1507/53802|503/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,6:28:58:58,0,542	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2340	.	C	T	29.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.72;MQ0=2;MQRankSum=-2.948;QD=1.15;ReadPosRankSum=0.427;SOR=0.941;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1512C>T|p.Leu504Leu|1512/53802|1512/53802|504/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,5:26:58:58,0,528	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2691	.	G	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=10.7521;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=0;MQRankSum=-5.123;QD=6.51;ReadPosRankSum=-2.066;SOR=0.384;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1863G>A|p.Leu621Leu|1863/53802|1863/53802|621/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,24:54:99:380,0,908	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2709	.	G	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.250;HaplotypeScore=11.6190;MLEAC=1;MLEAF=0.500;MQ=49.52;MQ0=0;MQRankSum=-3.386;QD=3.25;ReadPosRankSum=-1.909;SOR=0.527;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1881G>C|p.Lys627Asn|1881/53802|1881/53802|627/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:41,15:57:99:210,0,1155	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2710	.	C	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=6.6344;MLEAC=1;MLEAF=0.500;MQ=49.52;MQ0=0;MQRankSum=-3.202;QD=3.19;ReadPosRankSum=-1.888;SOR=0.557;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1882C>A|p.His628Asn|1882/53802|1882/53802|628/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:42,15:57:99:210,0,1166	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2718	.	T	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.492;HaplotypeScore=8.5490;MLEAC=1;MLEAF=0.500;MQ=49.67;MQ0=0;MQRankSum=-1.486;QD=0.72;ReadPosRankSum=-0.403;SOR=0.399;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1890T>G|p.Phe630Leu|1890/53802|1890/53802|630/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:49,8:57:69:69,0,1282	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2720	.	C	T	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8150;MLEAC=1;MLEAF=0.500;MQ=49.67;MQ0=0;MQRankSum=-3.530;QD=3.75;ReadPosRankSum=-0.391;SOR=0.356;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1892C>T|p.Thr631Ile|1892/53802|1892/53802|631/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:41,16:57:99:242,0,1157	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2739	.	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=16.3607;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=1;MQRankSum=-4.142;QD=4.40;ReadPosRankSum=1.281;SOR=0.489;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1911A>G|p.Ser637Ser|1911/53802|1911/53802|637/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,18:52:99:257,0,962	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2740	.	T	C	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.3607;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=1;MQRankSum=-2.935;QD=0.55;ReadPosRankSum=0.078;SOR=0.892;ANN=C|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1912T>C|p.Ter638Glnext*?|1912/53802|1912/53802|638/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:44,8:52:57:57,0,1195	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2742	.	G	A	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.3607;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=1;MQRankSum=-2.935;QD=0.55;ReadPosRankSum=0.039;SOR=0.892;ANN=A|stop_retained_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1914G>A|p.Ter638Ter|1914/53802|1914/53802|638/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:44,8:52:57:57,0,1171	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2767	.	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.5950;MLEAC=1;MLEAF=0.500;MQ=48.56;MQ0=2;MQRankSum=-4.384;QD=5.44;ReadPosRankSum=2.080;SOR=0.343;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1939T>C|p.Ser647Pro|1939/53802|1939/53802|647/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,20:50:99:300,0,804	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2769	.	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.5950;MLEAC=1;MLEAF=0.500;MQ=48.30;MQ0=2;MQRankSum=-2.999;QD=1.40;ReadPosRankSum=0.283;SOR=0.653;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1941C>T|p.Ser647Ser|1941/53802|1941/53802|647/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:40,9:49:97:97,0,987	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2771	.	C	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.5950;MLEAC=1;MLEAF=0.500;MQ=48.56;MQ0=2;MQRankSum=-3.239;QD=1.31;ReadPosRankSum=0.453;SOR=0.653;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1943C>G|p.Thr648Ser|1943/53802|1943/53802|648/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,9:50:91:91,0,1061	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2788	.	A	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=50.71;MQ0=2;MQRankSum=-2.635;QD=1.61;ReadPosRankSum=1.367;SOR=0.779;ANN=T|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1960A>T|p.Lys654*|1960/53802|1960/53802|654/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:40,9:49:99:107,0,1022	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2806	.	A	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=2;MQRankSum=-4.576;QD=3.10;ReadPosRankSum=1.587;SOR=0.892;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1978A>C|p.Arg660Arg|1978/53802|1978/53802|660/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,13:46:99:171,0,932	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2813	.	C	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.433;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=52.76;MQ0=2;MQRankSum=-4.440;QD=3.19;ReadPosRankSum=0.978;SOR=1.022;ANN=G|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1985C>G|p.Ser662*|1985/53802|1985/53802|662/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,11:45:99:172,0,896	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	2827	.	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;DP=40;Dels=0.03;ExcessHet=3.0103;FS=14.762;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.29;MQ0=2;MQRankSum=-5.012;QD=3.35;ReadPosRankSum=0.207;SOR=3.816;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.1999T>C|p.Phe667Leu|1999/53802|1999/53802|667/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,8:39:99:159,0,772	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	3278	.	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=47;Dels=0.00;ExcessHet=3.0103;FS=11.621;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=37.99;MQ0=4;MQRankSum=-3.440;QD=0.84;ReadPosRankSum=1.283;SOR=4.407;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.2450C>T|p.Thr817Met|2450/53802|2450/53802|817/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,12:47:67:67,0,819	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	3299	.	C	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=45;Dels=0.00;ExcessHet=3.0103;FS=5.282;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=40.06;MQ0=4;MQRankSum=-4.672;QD=3.64;ReadPosRankSum=-0.100;SOR=1.871;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.2471C>T|p.Ser824Phe|2471/53802|2471/53802|824/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,15:45:99:192,0,816	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	3321	.	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=40.50;MQ0=4;MQRankSum=-4.423;QD=5.46;ReadPosRankSum=-1.057;SOR=0.724;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.2493G>A|p.Met831Ile|2493/53802|2493/53802|831/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,20:47:99:285,0,789	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	3433	.	T	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.448;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=46.37;MQ0=2;MQRankSum=-5.718;QD=6.42;ReadPosRankSum=-0.111;SOR=1.505;ANN=A|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.2605T>A|p.Ter869Lysext*?|2605/53802|2605/53802|869/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,28:62:99:426,0,921	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	3467	.	T	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.181;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=3;MQRankSum=-5.385;QD=4.95;ReadPosRankSum=-0.389;SOR=1.195;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.2639T>G|p.Leu880Trp|2639/53802|2639/53802|880/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:36,24:60:99:325,0,1025	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	3937	.	T	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.425;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=51.36;MQ0=0;MQRankSum=-5.902;QD=1.21;ReadPosRankSum=-1.046;SOR=1.325;ANN=G|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.3109T>G|p.Ter1037Gluext*?|3109/53802|3109/53802|1037/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,12:41:78:78,0,874	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	4054	.	A	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=0;MQRankSum=-5.398;QD=2.37;ReadPosRankSum=-0.577;SOR=0.776;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.3226A>C|p.Lys1076Gln|3226/53802|3226/53802|1076/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,14:45:99:135,0,854	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	7222	.	T	G	62.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.69;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.6394T>G|p.Tyr2132Asp|6394/53802|6394/53802|2132/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:90,6,0	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	7235	.	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.34;MQ0=0;MQRankSum=1.645;QD=8.75;ReadPosRankSum=-1.645;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.6407G>A|p.Gly2136Glu|6407/53802|6407/53802|2136/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,3:5:36:72,0,36	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	7263	.	A	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-0.792;QD=13.40;ReadPosRankSum=0.792;SOR=0.223;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.6435A>C|p.Ala2145Ala|6435/53802|6435/53802|2145/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,6:7:30:122,0,30	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	7288	.	A	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=0;MQRankSum=-2.000;QD=7.98;ReadPosRankSum=2.128;SOR=0.330;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.6460A>T|p.Asn2154Tyr|6460/53802|6460/53802|2154/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,7:11:99:116,0,109	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	7603	.	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.511;SOR=1.329;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.6775G>A|p.Gly2259Ser|6775/53802|6775/53802|2259/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,6:10:71:156,0,71	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8233	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;DP=27;Dels=0.00;ExcessHet=3.0103;FS=5.653;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=1;MQRankSum=-4.918;QD=1.36;ReadPosRankSum=-1.794;SOR=1.897;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7405T>C|p.Cys2469Arg|7405/53802|7405/53802|2469/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:27:65:65,0,565	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8292	.	C	CT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.603;DP=24;ExcessHet=3.0103;FS=13.331;MLEAC=1;MLEAF=0.500;MQ=49.50;MQ0=0;MQRankSum=-4.345;QD=6.37;RPA=3,4;RU=T;ReadPosRankSum=2.576;SOR=2.216;STR;ANN=CT|frameshift_variant|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7467dupT|p.Gln2490fs|7468/53802|7468/53802|2490/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|1|1.00)	GT:AD:DP:GQ:PL	0/1:15,6:21:99:171,0,518	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8297	.	A	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;DP=22;Dels=0.00;ExcessHet=3.0103;FS=12.420;HaplotypeScore=11.6837;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=2;MQRankSum=-4.186;QD=5.08;ReadPosRankSum=2.978;SOR=2.526;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7469A>C|p.Gln2490Pro|7469/53802|7469/53802|2490/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:140,0,332	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8302	.	A	C	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=11.6837;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=2;MQRankSum=-1.988;QD=1.17;ReadPosRankSum=0.690;SOR=2.805;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7474A>C|p.Ile2492Leu|7474/53802|7474/53802|2492/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,3:22:54:54,0,406	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8305	.	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;DP=23;Dels=0.00;ExcessHet=3.0103;FS=12.420;HaplotypeScore=11.6837;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=2;MQRankSum=-4.313;QD=4.73;ReadPosRankSum=2.691;SOR=2.522;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7477C>A|p.Leu2493Ile|7477/53802|7477/53802|2493/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,8:23:99:137,0,372	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8306	.	T	C	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.6837;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=2;MQRankSum=-2.657;QD=0.69;ReadPosRankSum=1.778;SOR=0.883;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7478T>C|p.Leu2493Pro|7478/53802|7478/53802|2493/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,7:23:44:44,0,429	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8307	.	C	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;DP=24;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=11.6837;MLEAC=1;MLEAF=0.500;MQ=49.50;MQ0=2;MQRankSum=-2.199;QD=0.70;ReadPosRankSum=1.248;SOR=2.807;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7479C>A|p.Leu2493Leu|7479/53802|7479/53802|2493/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,3:24:45:45,0,517	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8313	.	T	TA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;DP=23;ExcessHet=3.0103;FS=8.512;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=-4.222;QD=6.94;RPA=3,4;RU=A;ReadPosRankSum=1.940;SOR=2.236;STR;ANN=TA|frameshift_variant|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7488dupA|p.Tyr2497fs|7489/53802|7489/53802|2497/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|1|1.00)	GT:AD:DP:GQ:PL	0/1:14,6:20:99:176,0,492	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8348	.	G	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6089;MLEAC=1;MLEAF=0.500;MQ=44.60;MQ0=2;MQRankSum=-4.005;QD=6.76;ReadPosRankSum=-1.252;SOR=0.412;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7520G>A|p.Ser2507Asn|7520/53802|7520/53802|2507/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:177,0,208	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8358	.	T	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6109;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=2;MQRankSum=-3.860;QD=4.94;ReadPosRankSum=-0.223;SOR=0.765;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7530T>A|p.Thr2510Thr|7530/53802|7530/53802|2510/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:127,0,245	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8365	.	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=44.57;MQ0=2;MQRankSum=-3.566;QD=4.94;ReadPosRankSum=-0.045;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7537A>G|p.Lys2513Glu|7537/53802|7537/53802|2513/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:127,0,263	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8368	.	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=44.57;MQ0=2;MQRankSum=-3.566;QD=4.94;ReadPosRankSum=-0.045;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7540T>C|p.Tyr2514His|7540/53802|7540/53802|2514/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:127,0,231	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8398	.	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=13;Dels=0.00;ExcessHet=3.0103;FS=6.264;HaplotypeScore=3.8286;MLEAC=1;MLEAF=0.500;MQ=45.13;MQ0=1;MQRankSum=-2.804;QD=6.14;ReadPosRankSum=2.278;SOR=3.180;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7570A>G|p.Thr2524Ala|7570/53802|7570/53802|2524/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:108,0,211	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8407	.	C	T	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9051;MLEAC=1;MLEAF=0.500;MQ=43.67;MQ0=1;MQRankSum=-0.980;QD=1.08;ReadPosRankSum=0.000;SOR=1.371;ANN=T|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7579C>T|p.Arg2527*|7579/53802|7579/53802|2527/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,2:12:41:41,0,239	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8420	.	A	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=1.9106;MLEAC=1;MLEAF=0.500;MQ=41.87;MQ0=1;MQRankSum=-2.412;QD=7.80;ReadPosRankSum=1.559;SOR=3.599;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7592A>T|p.Asn2531Ile|7592/53802|7592/53802|2531/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:114,0,121	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8434	.	T	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DP=10;Dels=0.00;ExcessHet=3.0103;FS=7.782;HaplotypeScore=1.9968;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=0;MQRankSum=-2.881;QD=8.58;ReadPosRankSum=1.559;SOR=3.599;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7606T>A|p.Trp2536Arg|7606/53802|7606/53802|2536/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:114,0,145	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8444	.	G	A	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9944;MLEAC=1;MLEAF=0.500;MQ=45.12;MQ0=0;MQRankSum=-0.862;QD=1.76;ReadPosRankSum=1.480;SOR=1.179;ANN=A|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7616G>A|p.Trp2539*|7616/53802|7616/53802|2539/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,2:9:44:44,0,211	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8518	.	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8876;MLEAC=1;MLEAF=0.500;MQ=40.05;MQ0=0;MQRankSum=-1.987;QD=1.72;ReadPosRankSum=-0.695;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7690C>T|p.Pro2564Ser|7690/53802|7690/53802|2564/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,5:19:61:61,0,363	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8556	.	A	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.465;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=42.04;MQ0=0;MQRankSum=-3.938;QD=6.16;ReadPosRankSum=1.759;SOR=1.819;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7728A>C|p.Ile2576Ile|7728/53802|7728/53802|2576/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,10:25:99:176,0,375	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8695	.	T	C	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=43.83;MQ0=1;MQRankSum=-4.612;QD=10.08;ReadPosRankSum=1.087;SOR=0.317;ANN=C|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7867T>C|p.Ter2623Glnext*?|7867/53802|7867/53802|2623/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:381,0,402	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8773	.	G	A	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.44;MQ0=1;MQRankSum=-3.871;QD=8.41;ReadPosRankSum=0.401;SOR=0.654;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7945G>A|p.Ala2649Thr|7945/53802|7945/53802|2649/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:230,0,325	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8802	.	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7474;MLEAC=1;MLEAF=0.500;MQ=47.26;MQ0=0;MQRankSum=-1.054;QD=6.70;ReadPosRankSum=-1.963;SOR=0.942;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.7974C>T|p.Asn2658Asn|7974/53802|7974/53802|2658/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:189,0,349	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8868	.	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.127;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=50.34;MQ0=0;MQRankSum=-0.536;QD=1.09;ReadPosRankSum=-1.140;SOR=1.402;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8040A>G|p.Lys2680Lys|8040/53802|8040/53802|2680/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,4:32:63:63,0,638	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8918	.	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DP=37;Dels=0.00;ExcessHet=3.0103;FS=9.049;HaplotypeScore=5.0751;MLEAC=1;MLEAF=0.500;MQ=52.15;MQ0=0;MQRankSum=-1.757;QD=3.45;ReadPosRankSum=-1.606;SOR=1.786;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8090T>C|p.Leu2697Ser|8090/53802|8090/53802|2697/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,8:37:99:156,0,678	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8937	.	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4968;MLEAC=1;MLEAF=0.500;MQ=52.58;MQ0=0;MQRankSum=-2.224;QD=0.79;ReadPosRankSum=1.909;SOR=0.638;ANN=A|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8109C>A|p.Tyr2703*|8109/53802|8109/53802|2703/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,6:39:59:59,0,802	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8938	.	G	T	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=52.83;MQ0=0;MQRankSum=-2.365;QD=0.56;ReadPosRankSum=1.732;SOR=0.634;ANN=T|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8110G>T|p.Glu2704*|8110/53802|8110/53802|2704/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,6:37:49:49,0,772	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8951	.	A	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.921;HaplotypeScore=12.4691;MLEAC=1;MLEAF=0.500;MQ=51.76;MQ0=0;MQRankSum=-2.782;QD=3.14;ReadPosRankSum=1.167;SOR=1.282;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8123A>T|p.Asn2708Ile|8123/53802|8123/53802|2708/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,9:40:99:154,0,663	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8954	.	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.294;HaplotypeScore=13.3850;MLEAC=1;MLEAF=0.500;MQ=51.70;MQ0=0;MQRankSum=-5.024;QD=3.28;ReadPosRankSum=-0.624;SOR=0.936;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8126T>C|p.Leu2709Pro|8126/53802|8126/53802|2709/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,12:39:99:156,0,580	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	8982	.	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=52.12;MQ0=0;MQRankSum=-4.223;QD=1.94;ReadPosRankSum=-1.374;SOR=0.818;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8154A>G|p.Ser2718Ser|8154/53802|8154/53802|2718/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,9:38:99:102,0,690	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9060	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=35;Dels=0.00;ExcessHet=3.0103;FS=9.947;HaplotypeScore=21.5028;MLEAC=1;MLEAF=0.500;MQ=50.46;MQ0=0;MQRankSum=-2.311;QD=1.59;ReadPosRankSum=0.354;SOR=3.596;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8232A>G|p.Leu2744Leu|8232/53802|8232/53802|2744/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,5:35:84:84,0,771	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9065	.	A	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=34;Dels=0.00;ExcessHet=3.0103;FS=10.098;HaplotypeScore=15.7844;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=0;MQRankSum=-2.544;QD=2.09;ReadPosRankSum=0.215;SOR=3.599;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8237A>T|p.Lys2746Ile|8237/53802|8237/53802|2746/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,5:34:93:93,0,685	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9066	.	A	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DP=34;Dels=0.00;ExcessHet=3.0103;FS=10.683;HaplotypeScore=15.7844;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=0;MQRankSum=-2.826;QD=3.08;ReadPosRankSum=-0.149;SOR=2.545;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8238A>T|p.Lys2746Asn|8238/53802|8238/53802|2746/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,7:34:99:133,0,668	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9067	.	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;DP=34;Dels=0.00;ExcessHet=3.0103;FS=4.746;HaplotypeScore=15.7844;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=0;MQRankSum=-1.391;QD=0.93;ReadPosRankSum=-0.511;SOR=1.936;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8239T>A|p.Phe2747Ile|8239/53802|8239/53802|2747/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,5:34:60:60,0,640	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9105	.	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=50.52;MQ0=0;MQRankSum=-4.167;QD=8.71;ReadPosRankSum=0.000;SOR=0.936;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8277C>T|p.Tyr2759Tyr|8277/53802|8277/53802|2759/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:246,0,447	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9144	.	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=21;Dels=0.00;ExcessHet=3.0103;FS=9.103;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=0;MQRankSum=-3.445;QD=6.51;ReadPosRankSum=0.857;SOR=3.219;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8316C>T|p.Ser2772Ser|8316/53802|8316/53802|2772/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,6:21:99:165,0,410	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9166	.	C	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.94;MQ0=0;MQRankSum=-4.594;QD=6.55;ReadPosRankSum=0.170;SOR=0.569;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8338C>A|p.Pro2780Thr|8338/53802|8338/53802|2780/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,9:25:99:192,0,447	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9206	.	C	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.471;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=49.77;MQ0=0;MQRankSum=-4.258;QD=5.89;ReadPosRankSum=-0.315;SOR=1.172;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8378C>T|p.Ala2793Val|8378/53802|8378/53802|2793/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,11:29:99:199,0,488	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	9269	.	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.929;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=50.07;MQ0=2;MQRankSum=-4.684;QD=5.02;ReadPosRankSum=1.815;SOR=2.670;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.8441G>A|p.Ser2814Asn|8441/53802|8441/53802|2814/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,10:36:99:209,0,545	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	10248	.	A	G	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-4.468;QD=0.78;ReadPosRankSum=1.335;SOR=1.136;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.9420A>G|p.Gln3140Gln|9420/53802|9420/53802|3140/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,7:24:47:47,0,447	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17224	.	C	G	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=83;Dels=0.00;ExcessHet=3.0103;FS=17.270;HaplotypeScore=4.4820;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=31;MQRankSum=-4.727;QD=9.67;ReadPosRankSum=-3.568;SOR=4.556;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16396C>G|p.Gln5466Glu|16396/53802|16396/53802|5466/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,63:83:99:831,0,459	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17392	.	G	A	1924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;DP=191;Dels=0.00;ExcessHet=3.0103;FS=89.289;HaplotypeScore=19.6539;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=37;MQRankSum=-7.267;QD=10.18;ReadPosRankSum=-1.275;SOR=6.884;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16564G>A|p.Gly5522Ser|16564/53802|16564/53802|5522/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,162:191:99:1953,0,541	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17395	.	T	C	1844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;DP=194;Dels=0.00;ExcessHet=3.0103;FS=77.133;HaplotypeScore=32.7125;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=38;MQRankSum=-7.071;QD=9.56;ReadPosRankSum=-1.107;SOR=6.439;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16567T>C|p.Ser5523Pro|16567/53802|16567/53802|5523/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,166:194:99:1873,0,594	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17413	.	T	C	2052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;DP=250;Dels=0.00;ExcessHet=3.0103;FS=67.934;HaplotypeScore=19.1173;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=78;MQRankSum=-8.358;QD=8.21;ReadPosRankSum=-2.866;SOR=3.838;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16585T>C|p.Tyr5529His|16585/53802|16585/53802|5529/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,216:250:99:2081,0,741	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17427	.	A	G	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=29.6132;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=70;MQRankSum=-5.589;QD=8.23;ReadPosRankSum=-4.935;SOR=1.469;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16599A>G|p.Pro5533Pro|16599/53802|16599/53802|5533/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:56,192:250:99:2070,0,1075	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17459	.	A	G	2464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DP=250;Dels=0.00;ExcessHet=3.0103;FS=30.841;HaplotypeScore=36.0108;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=56;MQRankSum=-5.734;QD=9.90;ReadPosRankSum=-1.157;SOR=2.700;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16631A>G|p.Asn5544Ser|16631/53802|16631/53802|5544/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,216:250:99:2493,0,507	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17712	.	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.6963;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=69;MQRankSum=1.051;QD=0.95;ReadPosRankSum=-2.612;SOR=0.701;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16884A>G|p.Lys5628Lys|16884/53802|16884/53802|5628/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:214,36:250:99:266,0,3613	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	17809	.	G	A	3529.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.298;DP=188;Dels=0.00;ExcessHet=3.0103;FS=40.395;HaplotypeScore=16.8983;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=31;MQRankSum=-3.400;QD=18.78;ReadPosRankSum=0.888;SOR=9.643;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.16981G>A|p.Glu5661Lys|16981/53802|16981/53802|5661/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:9,179:188:99:3558,177,0	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	21112	.	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.054;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.322;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.35;ReadPosRankSum=1.422;SOR=0.468;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.20284C>T|p.Arg6762Trp|20284/53802|20284/53802|6762/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,13:32:99:411,0,445	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	21354	.	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DP=24;Dels=0.00;ExcessHet=3.0103;FS=6.862;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.37;ReadPosRankSum=-0.537;SOR=1.305;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.20526C>T|p.Arg6842Arg|20526/53802|20526/53802|6842/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:445,0,196	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22315	.	G	A	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.200;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=0;MQRankSum=-2.684;QD=0.43;ReadPosRankSum=-1.238;SOR=1.112;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.21487G>A|p.Ala7163Thr|21487/53802|21487/53802|7163/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,3:35:43:43,0,836	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22353	.	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.979;HaplotypeScore=2.9906;MLEAC=1;MLEAF=0.500;MQ=51.90;MQ0=0;MQRankSum=-4.920;QD=6.56;ReadPosRankSum=0.407;SOR=1.506;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.21525A>G|p.Gln7175Gln|21525/53802|21525/53802|7175/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,10:32:99:238,0,674	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22411	.	A	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.475;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=0;MQRankSum=-4.321;QD=4.44;ReadPosRankSum=0.148;SOR=0.560;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.21583A>G|p.Arg7195Gly|21583/53802|21583/53802|7195/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,13:36:99:188,0,699	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22428	.	A	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4890;MLEAC=1;MLEAF=0.500;MQ=46.70;MQ0=2;MQRankSum=-2.304;QD=4.22;ReadPosRankSum=-0.353;SOR=0.793;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.21600A>G|p.Pro7200Pro|21600/53802|21600/53802|7200/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,10:35:99:176,0,665	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22430	.	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.8100;MLEAC=1;MLEAF=0.500;MQ=46.74;MQ0=2;MQRankSum=-2.410;QD=4.10;ReadPosRankSum=-0.132;SOR=0.720;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.21602C>T|p.Thr7201Met|21602/53802|21602/53802|7201/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,10:36:99:176,0,655	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22440	.	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.5953;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=2;MQRankSum=3.282;QD=10.88;ReadPosRankSum=-1.046;SOR=0.846;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.21612C>T|p.Ser7204Ser|21612/53802|21612/53802|7204/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,13:36:99:420,0,417	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22985	.	C	A	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=2;MQRankSum=-3.489;QD=0.44;ReadPosRankSum=-0.639;SOR=1.080;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.22157C>A|p.Pro7386His|22157/53802|22157/53802|7386/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,5:25:39:39,0,556	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22997	.	G	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=2;MQRankSum=-3.903;QD=2.95;ReadPosRankSum=-1.306;SOR=1.934;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.22169G>T|p.Ser7390Ile|22169/53802|22169/53802|7390/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,7:25:99:102,0,547	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	22998	.	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=2;MQRankSum=-3.903;QD=2.95;ReadPosRankSum=-1.119;SOR=1.934;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.22170T>C|p.Ser7390Ser|22170/53802|22170/53802|7390/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,7:25:99:102,0,547	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	23105	.	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.35;MQ0=0;MQRankSum=-2.666;QD=1.18;ReadPosRankSum=-0.846;SOR=0.863;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.22277T>C|p.Leu7426Pro|22277/53802|22277/53802|7426/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,5:26:59:59,0,663	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	23112	.	A	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.35;MQ0=0;MQRankSum=-2.666;QD=1.18;ReadPosRankSum=-1.336;SOR=0.863;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.22284A>G|p.Ser7428Ser|22284/53802|22284/53802|7428/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,5:26:59:59,0,650	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	25507	.	G	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.034;HaplotypeScore=4.7131;MLEAC=1;MLEAF=0.500;MQ=52.69;MQ0=0;MQRankSum=-4.877;QD=1.09;ReadPosRankSum=-3.887;SOR=1.772;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.24679G>T|p.Gly8227Trp|24679/53802|24679/53802|8227/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:40,15:55:88:88,0,1127	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	25529	.	C	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.483;HaplotypeScore=46.4718;MLEAC=1;MLEAF=0.500;MQ=44.92;MQ0=3;MQRankSum=0.579;QD=0.55;ReadPosRankSum=-0.077;SOR=1.185;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.24701C>A|p.Pro8234His|24701/53802|24701/53802|8234/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:73,9:82:73:73,0,1493	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	25537	.	G	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=47.0012;MLEAC=1;MLEAF=0.500;MQ=43.33;MQ0=5;MQRankSum=0.682;QD=0.45;ReadPosRankSum=0.182;SOR=0.813;ANN=T|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.24709G>T|p.Gly8237*|24709/53802|24709/53802|8237/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:81,10:91:69:69,0,1555	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	25596	.	T	A	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.3529;MLEAC=1;MLEAF=0.500;MQ=32.66;MQ0=25;MQRankSum=1.747;QD=0.14;ReadPosRankSum=0.633;SOR=0.481;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.24768T>A|p.Ser8256Ser|24768/53802|24768/53802|8256/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:123,17:140:48:48,0,2082	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	25801	.	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DP=76;Dels=0.00;ExcessHet=3.0103;FS=18.976;HaplotypeScore=9.7271;MLEAC=1;MLEAF=0.500;MQ=44.50;MQ0=8;MQRankSum=-7.192;QD=3.52;ReadPosRankSum=-3.341;SOR=2.833;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.24973G>A|p.Gly8325Ser|24973/53802|24973/53802|8325/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:41,35:76:99:296,0,1121	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26149	.	T	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4290;MLEAC=1;MLEAF=0.500;MQ=48.69;MQ0=4;MQRankSum=-4.667;QD=1.49;ReadPosRankSum=0.287;SOR=0.616;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25321T>A|p.Tyr8441Asn|25321/53802|25321/53802|8441/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,11:28:70:70,0,494	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26378	.	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=2.5657;MLEAC=1;MLEAF=0.500;MQ=45.54;MQ0=2;MQRankSum=0.319;QD=2.70;ReadPosRankSum=0.298;SOR=1.456;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25550A>G|p.Tyr8517Cys|25550/53802|25550/53802|8517/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:24:93:93,0,345	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26419	.	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=48.65;MQ0=3;MQRankSum=-0.547;QD=5.07;ReadPosRankSum=0.245;SOR=0.976;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25591A>G|p.Arg8531Gly|25591/53802|25591/53802|8531/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,8:27:99:165,0,398	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26523	.	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=50.95;MQ0=5;MQRankSum=-2.561;QD=5.36;ReadPosRankSum=-0.320;SOR=0.818;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25695C>T|p.Tyr8565Tyr|25695/53802|25695/53802|8565/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,9:33:99:205,0,431	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26558	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.545;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=50.06;MQ0=4;MQRankSum=-1.442;QD=4.44;ReadPosRankSum=-1.541;SOR=2.115;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25730G>A|p.Cys8577Tyr|25730/53802|25730/53802|8577/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:27:99:148,0,423	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26576	.	T	C	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7461;MLEAC=1;MLEAF=0.500;MQ=49.92;MQ0=3;MQRankSum=-2.114;QD=0.65;ReadPosRankSum=0.530;SOR=0.784;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25748T>C|p.Phe8583Ser|25748/53802|25748/53802|8583/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,3:23:43:43,0,441	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26577	.	C	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7461;MLEAC=1;MLEAF=0.500;MQ=49.92;MQ0=3;MQRankSum=-3.488;QD=4.25;ReadPosRankSum=1.569;SOR=0.986;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25749C>A|p.Phe8583Leu|25749/53802|25749/53802|8583/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:126,0,310	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	26638	.	A	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.97;MQ0=0;MQRankSum=-1.480;QD=3.42;ReadPosRankSum=0.000;SOR=1.911;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.25810A>T|p.Asn8604Tyr|25810/53802|25810/53802|8604/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,2:9:59:59,0,149	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	28872	.	T	C	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.62;MQ0=0;MQRankSum=-4.121;QD=1.04;ReadPosRankSum=0.834;SOR=1.022;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28044T>C|p.Ser9348Ser|28044/53802|28044/53802|9348/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,5:19:48:48,0,425	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	28874	.	A	G	22.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.52;MQ0=2;MQRankSum=-3.992;QD=1.14;ReadPosRankSum=0.641;SOR=0.859;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28046A>G|p.Asn9349Ser|28046/53802|28046/53802|9349/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,5:20:51:51,0,392	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	28898	.	C	T	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=3;MQRankSum=-3.652;QD=0.79;ReadPosRankSum=1.533;SOR=0.512;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28070C>T|p.Ser9357Leu|28070/53802|28070/53802|9357/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,4:25:48:48,0,432	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	28907	.	T	C	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=3;MQRankSum=-4.594;QD=0.76;ReadPosRankSum=1.566;SOR=0.784;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28079T>C|p.Val9360Ala|28079/53802|28079/53802|9360/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,8:26:48:48,0,435	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	28931	.	G	A	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=3;MQRankSum=-4.594;QD=0.54;ReadPosRankSum=0.747;SOR=0.582;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28103G>A|p.Arg9368Lys|28103/53802|28103/53802|9368/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,5:26:42:42,0,499	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	29424	.	G	T	12.05	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-3.867;QD=0.71;ReadPosRankSum=-2.164;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28596G>T|p.Gln9532His|28596/53802|28596/53802|9532/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,2:17:40:40,0,466	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	29480	.	T	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.638;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=2;MQRankSum=-1.483;QD=6.12;ReadPosRankSum=-0.586;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28652T>C|p.Leu9551Ser|28652/53802|28652/53802|9551/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,8:31:99:218,0,565	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	29572	.	G	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.439;HaplotypeScore=2.9138;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=3;MQRankSum=0.212;QD=11.95;ReadPosRankSum=1.410;SOR=0.980;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28744G>A|p.Glu9582Lys|28744/53802|28744/53802|9582/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,23:47:99:590,0,588	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	29661	.	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.029;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=-2.186;QD=14.61;ReadPosRankSum=0.746;SOR=0.410;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.28833G>A|p.Val9611Val|28833/53802|28833/53802|9611/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,19:35:99:525,0,434	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	29926	.	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.869;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=1;MQRankSum=-2.002;QD=2.74;ReadPosRankSum=-0.875;SOR=1.941;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.29098C>T|p.Leu9700Phe|29098/53802|29098/53802|9700/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,5:28:99:105,0,676	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	29932	.	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=1;MQRankSum=-2.052;QD=2.65;ReadPosRankSum=-1.172;SOR=1.960;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.29104A>G|p.Thr9702Ala|29104/53802|29104/53802|9702/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,5:30:99:105,0,694	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	38168	.	T	C	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.239;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=2;MQRankSum=-1.335;QD=11.99;ReadPosRankSum=-0.656;SOR=1.665;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.37340T>C|p.Leu12447Pro|37340/53802|37340/53802|12447/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,16:30:99:376,0,393	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	38297	.	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.4933;MLEAC=1;MLEAF=0.500;MQ=53.84;MQ0=2;MQRankSum=-2.007;QD=2.73;ReadPosRankSum=1.476;SOR=0.551;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.37469T>C|p.Val12490Ala|37469/53802|37469/53802|12490/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,10:30:99:110,0,557	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	38350	.	C	CAT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=56.52;MQ0=0;MQRankSum=-0.674;QD=13.64;RPA=7,8;RU=AT;ReadPosRankSum=0.154;SOR=1.445;STR;ANN=CAT|frameshift_variant|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.37536_37537dupTA|p.Ser12513fs|37538/53802|37538/53802|12513/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|1|1.00)	GT:AD:DP:GQ:PL	0/1:6,6:16:99:201,0,216	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	38386	.	T	C	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=-2.317;QD=1.59;ReadPosRankSum=-1.508;SOR=1.434;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.37558T>C|p.Ser12520Pro|37558/53802|37558/53802|12520/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,4:15:52:52,0,328	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	38398	.	C	T	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.920;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.80;MQ0=0;MQRankSum=-2.659;QD=1.80;ReadPosRankSum=-0.795;SOR=0.681;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.37570C>T|p.Pro12524Ser|37570/53802|37570/53802|12524/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,5:16:57:57,0,283	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	38406	.	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.65;MQ0=0;MQRankSum=-2.308;QD=5.91;ReadPosRankSum=-1.868;SOR=1.108;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.37578T>C|p.Asn12526Asn|37578/53802|37578/53802|12526/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:105,0,190	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	38424	.	CGAGTA	C	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=-1.732;QD=18.22;RPA=3,2;RU=GAGTA;ReadPosRankSum=-0.508;SOR=0.850;STR;ANN=C|frameshift_variant|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.37609_37613delGTAGA|p.Val12537fs|37609/53802|37609/53802|12537/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|1|1.00)	GT:AD:DP:GQ:PL	0/1:5,5:11:99:341,0,328	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39511	.	T	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=38;Dels=0.00;ExcessHet=3.0103;FS=9.660;HaplotypeScore=4.3607;MLEAC=1;MLEAF=0.500;MQ=54.38;MQ0=0;MQRankSum=-5.988;QD=1.15;ReadPosRankSum=-0.120;SOR=4.614;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.38683T>A|p.Tyr12895Asn|38683/53802|38683/53802|12895/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,9:38:72:72,0,980	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39548	.	T	G	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.7015;MLEAC=1;MLEAF=0.500;MQ=56.03;MQ0=0;MQRankSum=-2.658;QD=4.44;ReadPosRankSum=-1.009;SOR=0.890;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.38720T>G|p.Val12907Gly|38720/53802|38720/53802|12907/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:45,16:61:99:299,0,1226	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39555	.	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.6174;MLEAC=1;MLEAF=0.500;MQ=56.03;MQ0=0;MQRankSum=-2.209;QD=3.52;ReadPosRankSum=-0.418;SOR=0.877;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.38727G>A|p.Thr12909Thr|38727/53802|38727/53802|12909/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:49,12:61:99:243,0,1312	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39649	.	G	A	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.088;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=0;MQRankSum=-5.419;QD=12.75;ReadPosRankSum=0.788;SOR=0.985;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.38821G>A|p.Asp12941Asn|38821/53802|38821/53802|12941/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,50:88:99:1150,0,988	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39661	.	C	A	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.855;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=53.98;MQ0=0;MQRankSum=-5.170;QD=12.22;ReadPosRankSum=-0.317;SOR=0.927;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.38833C>A|p.Pro12945Thr|38833/53802|38833/53802|12945/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:35,51:86:99:1079,0,973	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39779	.	G	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.736;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.010;HaplotypeScore=4.9937;MLEAC=1;MLEAF=0.500;MQ=52.66;MQ0=1;MQRankSum=-4.585;QD=8.69;ReadPosRankSum=-0.459;SOR=0.846;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.38951G>A|p.Arg12984His|38951/53802|38951/53802|12984/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,27:55:99:506,0,837	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39816	.	T	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4104;MLEAC=1;MLEAF=0.500;MQ=52.75;MQ0=1;MQRankSum=-4.977;QD=8.39;ReadPosRankSum=1.960;SOR=0.720;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.38988T>C|p.Pro12996Pro|38988/53802|38988/53802|12996/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,22:53:99:473,0,734	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	39880	.	T	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.268;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=48.38;MQ0=1;MQRankSum=-6.731;QD=9.21;ReadPosRankSum=-3.133;SOR=0.676;ANN=C|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39052T>C|p.Ter13018Argext*?|39052/53802|39052/53802|13018/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,29:56:99:544,0,684	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	40055	.	T	C	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.359;HaplotypeScore=5.7637;MLEAC=1;MLEAF=0.500;MQ=52.07;MQ0=2;MQRankSum=-3.696;QD=16.14;ReadPosRankSum=-0.578;SOR=1.401;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39227T>C|p.Met13076Thr|39227/53802|39227/53802|13076/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,26:41:99:690,0,486	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	40073	.	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=4.6634;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=2;MQRankSum=-3.371;QD=13.09;ReadPosRankSum=0.786;SOR=0.561;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39245T>C|p.Leu13082Pro|39245/53802|39245/53802|13082/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,23:42:99:578,0,501	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	40302	.	T	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.593;HaplotypeScore=9.2420;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-2.000;QD=14.95;ReadPosRankSum=-1.576;SOR=1.128;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39474T>G|p.Ile13158Met|39474/53802|39474/53802|13158/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,28:49:99:761,0,475	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	40325	.	C	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-0.911;QD=14.89;ReadPosRankSum=-1.269;SOR=0.931;ANN=A|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39497C>A|p.Ser13166*|39497/53802|39497/53802|13166/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,28:47:99:728,0,418	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	40336	.	T	C	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-2.000;QD=14.55;ReadPosRankSum=0.859;SOR=0.641;ANN=C|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39508T>C|p.Ter13170Glnext*?|39508/53802|39508/53802|13170/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,28:49:99:741,0,444	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	40467	.	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.619;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=0;MQRankSum=-3.574;QD=11.46;ReadPosRankSum=-0.264;SOR=1.302;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39639C>T|p.Tyr13213Tyr|39639/53802|39639/53802|13213/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,10:28:99:349,0,456	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	40485	.	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.946;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=-3.941;QD=8.56;ReadPosRankSum=-2.231;SOR=1.541;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.39657A>G|p.Ile13219Met|39657/53802|39657/53802|13219/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,10:28:99:268,0,414	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42499	.	T	C	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=-3.242;QD=0.72;ReadPosRankSum=-0.287;SOR=0.818;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41671T>C|p.Ser13891Pro|41671/53802|41671/53802|13891/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,3:22:44:44,0,466	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42536	.	A	G	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=1;MQRankSum=-3.560;QD=0.52;ReadPosRankSum=2.139;SOR=0.657;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41708A>G|p.Asn13903Ser|41708/53802|41708/53802|13903/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,4:25:41:41,0,502	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42543	.	A	C	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.25;MQ0=1;MQRankSum=-3.734;QD=0.43;ReadPosRankSum=1.599;SOR=0.732;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41715A>C|p.Lys13905Asn|41715/53802|41715/53802|13905/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:24:38:38,0,536	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42552	.	G	T	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=1;MQRankSum=-4.141;QD=0.79;ReadPosRankSum=1.119;SOR=0.648;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41724G>T|p.Trp13908Cys|41724/53802|41724/53802|13908/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,4:20:44:44,0,426	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42553	.	G	A	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=1;MQRankSum=-4.141;QD=0.65;ReadPosRankSum=1.119;SOR=0.648;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41725G>A|p.Ala13909Thr|41725/53802|41725/53802|13909/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,4:20:41:41,0,473	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42597	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3834;MLEAC=1;MLEAF=0.500;MQ=52.41;MQ0=1;MQRankSum=-2.675;QD=0.88;ReadPosRankSum=-1.320;SOR=1.368;ANN=G|stop_retained_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41769A>G|p.Ter13923Ter|41769/53802|41769/53802|13923/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,5:36:60:60,0,758	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42601	.	G	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.533;HaplotypeScore=11.1169;MLEAC=1;MLEAF=0.500;MQ=52.76;MQ0=1;MQRankSum=-5.488;QD=6.61;ReadPosRankSum=-1.147;SOR=1.276;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41773G>A|p.Ala13925Thr|41773/53802|41773/53802|13925/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,12:34:99:253,0,602	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42609	.	T	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.939;HaplotypeScore=17.2971;MLEAC=1;MLEAF=0.500;MQ=53.06;MQ0=1;MQRankSum=-3.699;QD=1.85;ReadPosRankSum=1.180;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41781T>A|p.Thr13927Thr|41781/53802|41781/53802|13927/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,6:36:95:95,0,793	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42613	.	A	G	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.8297;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=1;MQRankSum=-1.570;QD=0.70;ReadPosRankSum=-0.458;SOR=0.458;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41785A>G|p.Asn13929Asp|41785/53802|41785/53802|13929/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,5:38:54:54,0,843	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42632	.	T	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.5206;MLEAC=1;MLEAF=0.500;MQ=52.61;MQ0=2;MQRankSum=-2.719;QD=3.29;ReadPosRankSum=-0.591;SOR=0.798;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41804T>A|p.Ile13935Asn|41804/53802|41804/53802|13935/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,11:44:99:173,0,815	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42639	.	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.4365;MLEAC=1;MLEAF=0.500;MQ=52.56;MQ0=2;MQRankSum=-5.140;QD=8.85;ReadPosRankSum=0.512;SOR=0.963;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41811A>G|p.Lys13937Lys|41811/53802|41811/53802|13937/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,25:47:99:444,0,521	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42665	.	C	A	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6633;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=1;MQRankSum=-1.545;QD=0.50;ReadPosRankSum=1.124;SOR=0.643;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41837C>A|p.Ser13946Tyr|41837/53802|41837/53802|13946/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,7:44:50:50,0,969	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42680	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.5759;MLEAC=1;MLEAF=0.500;MQ=52.21;MQ0=1;MQRankSum=-1.537;QD=0.44;ReadPosRankSum=0.780;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41852C>T|p.Thr13951Ile|41852/53802|41852/53802|13951/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:42,7:49:50:50,0,972	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42688	.	T	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.242;HaplotypeScore=10.5761;MLEAC=1;MLEAF=0.500;MQ=51.34;MQ0=1;MQRankSum=-2.227;QD=2.73;ReadPosRankSum=0.334;SOR=0.504;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41860T>G|p.Leu13954Val|41860/53802|41860/53802|13954/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,12:49:99:162,0,917	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42773	.	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3971;MLEAC=1;MLEAF=0.500;MQ=45.87;MQ0=3;MQRankSum=-2.133;QD=1.34;ReadPosRankSum=-0.033;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41945A>G|p.Asp13982Gly|41945/53802|41945/53802|13982/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,5:29:67:67,0,599	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42791	.	A	T	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=45.31;MQ0=3;MQRankSum=-1.678;QD=0.62;ReadPosRankSum=1.412;SOR=2.093;ANN=T|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41963A>T|p.Ter13988Leuext*?|41963/53802|41963/53802|13988/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,3:24:43:43,0,416	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42806	.	T	G	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.53;MQ0=3;MQRankSum=-1.668;QD=0.65;ReadPosRankSum=0.902;SOR=2.247;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.41978T>G|p.Met13993Arg|41978/53802|41978/53802|13993/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,3:23:43:43,0,419	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42871	.	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9995;MLEAC=1;MLEAF=0.500;MQ=54.06;MQ0=1;MQRankSum=-0.989;QD=3.32;ReadPosRankSum=-1.938;SOR=0.368;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.42043A>G|p.Thr14015Ala|42043/53802|42043/53802|14015/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,5:18:88:88,0,388	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42886	.	T	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=1;MQRankSum=-2.527;QD=3.43;ReadPosRankSum=-0.627;SOR=0.569;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.42058T>A|p.Tyr14020Asn|42058/53802|42058/53802|14020/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,5:18:90:90,0,391	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42929	.	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=3;MQRankSum=-3.281;QD=2.59;ReadPosRankSum=2.510;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.42101C>T|p.Ser14034Phe|42101/53802|42101/53802|14034/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,8:25:93:93,0,394	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42944	.	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7449;MLEAC=1;MLEAF=0.500;MQ=55.77;MQ0=2;MQRankSum=-3.373;QD=1.91;ReadPosRankSum=2.276;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.42116C>T|p.Pro14039Leu|42116/53802|42116/53802|14039/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,7:25:76:76,0,432	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	42992	.	A	G	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8309;MLEAC=1;MLEAF=0.500;MQ=55.20;MQ0=2;MQRankSum=-2.527;QD=1.09;ReadPosRankSum=-1.986;SOR=0.569;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.42164A>G|p.His14055Arg|42164/53802|42164/53802|14055/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,6:19:49:49,0,372	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43209	.	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.284;SOR=0.648;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.42381A>G|p.Gln14127Gln|42381/53802|42381/53802|14127/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:245,0,341	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43595	.	G	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.505;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-1.298;SOR=2.303;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.42767G>A|p.Ser14256Asn|42767/53802|42767/53802|14256/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,6:30:99:181,0,625	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43876	.	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DP=29;Dels=0.00;ExcessHet=3.0103;FS=8.953;HaplotypeScore=2.7454;MLEAC=1;MLEAF=0.500;MQ=51.94;MQ0=3;MQRankSum=-4.924;QD=1.23;ReadPosRankSum=-1.139;SOR=3.442;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43048T>C|p.Cys14350Arg|43048/53802|43048/53802|14350/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,8:29:64:64,0,548	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43880	.	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=31;Dels=0.00;ExcessHet=3.0103;FS=9.432;HaplotypeScore=2.7454;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=3;MQRankSum=-5.098;QD=1.15;ReadPosRankSum=-1.699;SOR=4.003;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43052T>C|p.Leu14351Ser|43052/53802|43052/53802|14351/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,10:31:64:64,0,542	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43944	.	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DP=86;Dels=0.00;ExcessHet=3.0103;FS=10.349;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=25;MQRankSum=-1.493;QD=0.42;ReadPosRankSum=-2.363;SOR=3.004;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43116A>G|p.Ser14372Ser|43116/53802|43116/53802|14372/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:75,11:86:64:64,0,1120	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43964	.	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DP=98;Dels=0.00;ExcessHet=3.0103;FS=7.555;HaplotypeScore=26.0100;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=33;MQRankSum=-1.557;QD=1.41;ReadPosRankSum=0.041;SOR=2.102;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43136A>G|p.His14379Arg|43136/53802|43136/53802|14379/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:62,26:98:99:152,0,934	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43967	.	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.018;HaplotypeScore=28.9900;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=34;MQRankSum=-1.764;QD=4.16;ReadPosRankSum=3.015;SOR=0.972;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43139A>G|p.Lys14380Arg|43139/53802|43139/53802|14380/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:68,32:100:99:444,0,832	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43983	.	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.940;HaplotypeScore=18.7261;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=36;MQRankSum=-0.415;QD=1.03;ReadPosRankSum=-0.894;SOR=1.276;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43155C>T|p.Phe14385Phe|43155/53802|43155/53802|14385/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:93,12:105:99:136,0,1143	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	43999	.	C	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.4509;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=45;MQRankSum=1.022;QD=0.23;ReadPosRankSum=0.742;SOR=0.791;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43171C>T|p.Pro14391Ser|43171/53802|43171/53802|14391/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:106,14:120:56:56,0,1327	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	44008	.	A	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.728;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=35.7793;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=46;MQRankSum=-0.018;QD=1.84;ReadPosRankSum=-0.043;SOR=0.706;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43180A>T|p.Thr14394Ser|43180/53802|43180/53802|14394/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:91,28:119:99:247,0,1099	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	44016	.	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.9865;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=48;MQRankSum=0.762;QD=0.78;ReadPosRankSum=-1.226;SOR=0.631;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43188C>T|p.Phe14396Phe|43188/53802|43188/53802|14396/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:108,10:119:99:120,0,1159	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	44029	.	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2010;MLEAC=1;MLEAF=0.500;MQ=21.73;MQ0=53;MQRankSum=0.522;QD=2.34;ReadPosRankSum=0.084;SOR=0.963;ANN=T|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43201C>T|p.Gln14401*|43201/53802|43201/53802|14401/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:98,32:130:99:332,0,1135	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	44046	.	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DP=127;Dels=0.00;ExcessHet=3.0103;FS=3.382;HaplotypeScore=13.9150;MLEAC=1;MLEAF=0.500;MQ=19.85;MQ0=60;MQRankSum=0.098;QD=0.45;ReadPosRankSum=0.329;SOR=1.387;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.43218G>A|p.Leu14406Leu|43218/53802|43218/53802|14406/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:118,9:127:86:86,0,1317	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	44959	.	C	G	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-4.232;QD=0.56;ReadPosRankSum=0.315;SOR=2.269;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44131C>G|p.His14711Asp|44131/53802|44131/53802|14711/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,2:20:39:39,0,508	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45142	.	T	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.469;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.44;MQ0=8;MQRankSum=-2.790;QD=4.53;ReadPosRankSum=1.016;SOR=1.363;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44314T>A|p.Cys14772Ser|44314/53802|44314/53802|14772/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,16:38:99:196,0,432	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45218	.	G	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;DP=33;Dels=0.00;ExcessHet=3.0103;FS=4.669;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=32.25;MQ0=8;MQRankSum=-2.443;QD=5.96;ReadPosRankSum=0.165;SOR=0.070;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44390G>T|p.Gly14797Val|44390/53802|44390/53802|14797/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,13:33:99:225,0,454	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45256	.	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=54;Dels=0.00;ExcessHet=3.0103;FS=14.183;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=12;MQRankSum=-3.034;QD=1.31;ReadPosRankSum=-0.372;SOR=3.642;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44428G>A|p.Gly14810Arg|44428/53802|44428/53802|14810/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:43,11:54:99:99,0,1007	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45335	.	A	G	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;DP=78;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=36.81;MQ0=22;MQRankSum=-5.183;QD=5.04;ReadPosRankSum=-0.232;SOR=0.770;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44507A>G|p.His14836Arg|44507/53802|44507/53802|14836/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,44:77:99:416,0,775	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45356	.	A	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.311;HaplotypeScore=17.7208;MLEAC=1;MLEAF=0.500;MQ=34.26;MQ0=25;MQRankSum=-1.598;QD=3.18;ReadPosRankSum=-0.273;SOR=1.454;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44528A>G|p.His14843Arg|44528/53802|44528/53802|14843/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:65,19:85:99:295,0,977	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45378	.	T	G	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DP=108;Dels=0.00;ExcessHet=3.0103;FS=12.526;HaplotypeScore=9.4855;MLEAC=1;MLEAF=0.500;MQ=32.51;MQ0=34;MQRankSum=1.001;QD=0.23;ReadPosRankSum=-2.316;SOR=3.609;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44550T>G|p.Val14850Val|44550/53802|44550/53802|14850/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:103,5:108:53:53,0,1633	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45417	.	A	T	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;DP=120;Dels=0.00;ExcessHet=3.0103;FS=13.647;HaplotypeScore=11.4026;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=43;MQRankSum=-2.199;QD=0.21;ReadPosRankSum=0.288;SOR=2.870;ANN=T|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44589A>T|p.Ter14863Tyrext*?|44589/53802|44589/53802|14863/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:106,14:120:54:54,0,1581	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45517	.	A	G	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DP=107;Dels=0.00;ExcessHet=3.0103;FS=1.079;HaplotypeScore=32.9266;MLEAC=1;MLEAF=0.500;MQ=32.54;MQ0=26;MQRankSum=-4.891;QD=2.74;ReadPosRankSum=-0.362;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44689A>G|p.Ile14897Val|44689/53802|44689/53802|14897/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:71,35:107:99:319,0,1266	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45526	.	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.114;HaplotypeScore=29.6911;MLEAC=1;MLEAF=0.500;MQ=33.11;MQ0=24;MQRankSum=0.501;QD=2.07;ReadPosRankSum=1.829;SOR=0.990;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44698G>A|p.Ala14900Thr|44698/53802|44698/53802|14900/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:86,18:104:99:243,0,1328	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45554	.	A	T	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;DP=72;Dels=0.00;ExcessHet=3.0103;FS=6.581;HaplotypeScore=19.3526;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=14;MQRankSum=-5.488;QD=12.32;ReadPosRankSum=2.286;SOR=2.441;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44726A>T|p.Glu14909Val|44726/53802|44726/53802|14909/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,59:72:99:915,0,299	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45555	.	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.3460;MLEAC=1;MLEAF=0.500;MQ=35.04;MQ0=14;MQRankSum=-1.866;QD=3.01;ReadPosRankSum=-0.042;SOR=0.507;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44727A>G|p.Glu14909Glu|44727/53802|44727/53802|14909/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:54,19:73:99:248,0,1039	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45755	.	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;DP=54;Dels=0.00;ExcessHet=3.0103;FS=8.609;HaplotypeScore=3.7475;MLEAC=1;MLEAF=0.500;MQ=41.88;MQ0=12;MQRankSum=-5.656;QD=1.13;ReadPosRankSum=-1.340;SOR=3.368;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.44927A>G|p.Asp14976Gly|44927/53802|44927/53802|14976/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,20:54:88:88,0,738	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45841	.	T	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;DP=205;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.5568;MLEAC=1;MLEAF=0.500;MQ=29.99;MQ0=51;MQRankSum=-1.827;QD=1.39;ReadPosRankSum=1.411;SOR=0.836;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45013T>C|p.Leu15005Leu|45013/53802|45013/53802|15005/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:157,45:205:99:310,0,2664	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	45870	.	A	G	3501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;DP=250;Dels=0.00;ExcessHet=3.0103;FS=104.082;HaplotypeScore=62.2245;MLEAC=1;MLEAF=0.500;MQ=29.90;MQ0=53;MQRankSum=-7.598;QD=14.12;ReadPosRankSum=-2.241;SOR=5.699;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45042A>G|p.Leu15014Leu|45042/53802|45042/53802|15014/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:45,203:249:99:3530,0,708	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46082	.	ATT	A	1720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DP=233;ExcessHet=3.0103;FS=74.097;MLEAC=1;MLEAF=0.500;MQ=37.95;MQ0=0;MQRankSum=-6.013;QD=11.79;RPA=8,6;RU=T;ReadPosRankSum=-0.756;SOR=6.840;STR;ANN=A|frameshift_variant|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45261_45262delTT|p.Ser15088fs|45261/53802|45261/53802|15087/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|1|1.00)	GT:AD:DP:GQ:PL	0/1:91,55:170:99:1758,0,3440	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46140	.	A	C	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DP=115;Dels=0.00;ExcessHet=3.0103;FS=27.188;HaplotypeScore=24.9339;MLEAC=1;MLEAF=0.500;MQ=37.40;MQ0=8;MQRankSum=-6.474;QD=13.60;ReadPosRankSum=-2.550;SOR=4.455;ANN=C|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45312A>C|p.Ter15104Cysext*?|45312/53802|45312/53802|15104/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,84:115:99:1429,0,388	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46177	.	A	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DP=49;Dels=0.00;ExcessHet=3.0103;FS=19.133;HaplotypeScore=12.4298;MLEAC=1;MLEAF=0.500;MQ=43.83;MQ0=6;MQRankSum=-4.402;QD=8.94;ReadPosRankSum=-2.210;SOR=4.615;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45349A>C|p.Ile15117Leu|45349/53802|45349/53802|15117/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,16:49:99:359,0,546	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46182	.	T	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;DP=48;Dels=0.00;ExcessHet=3.0103;FS=17.652;HaplotypeScore=9.6201;MLEAC=1;MLEAF=0.500;MQ=42.81;MQ0=7;MQRankSum=-2.516;QD=6.70;ReadPosRankSum=-2.887;SOR=4.200;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45354T>C|p.Phe15118Phe|45354/53802|45354/53802|15118/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,18:48:99:350,0,707	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46198	.	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.787;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=7;MQRankSum=-3.214;QD=1.13;ReadPosRankSum=-0.525;SOR=3.185;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45370T>C|p.Ser15124Pro|45370/53802|45370/53802|15124/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,8:38:71:71,0,659	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46593	.	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=44.16;MQ0=5;MQRankSum=-2.499;QD=1.37;ReadPosRankSum=1.971;SOR=0.914;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45765G>A|p.Leu15255Leu|45765/53802|45765/53802|15255/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,5:32:72:72,0,581	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46660	.	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=48.90;MQ0=3;MQRankSum=-2.507;QD=2.03;ReadPosRankSum=-1.150;SOR=0.512;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45832G>A|p.Glu15278Lys|45832/53802|45832/53802|15278/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,4:25:79:79,0,475	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	46678	.	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.754;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=52.46;MQ0=2;MQRankSum=-3.185;QD=1.99;ReadPosRankSum=-0.503;SOR=1.609;ANN=C|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.45850T>C|p.Ter15284Glnext*?|45850/53802|45850/53802|15284/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,4:21:70:70,0,467	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	47127	.	T	C	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=46.52;MQ0=5;MQRankSum=-3.969;QD=0.95;ReadPosRankSum=0.751;SOR=0.148;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.46299T>C|p.Phe15433Phe|46299/53802|46299/53802|15433/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,11:23:50:50,0,420	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	47147	.	G	T	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.539;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.91;MQ0=7;MQRankSum=-3.917;QD=0.54;ReadPosRankSum=0.520;SOR=0.138;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.46319G>T|p.Gly15440Val|46319/53802|46319/53802|15440/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,8:29:41:41,0,541	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	47971	.	C	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DP=39;Dels=0.00;ExcessHet=3.0103;FS=9.910;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.93;MQ0=5;MQRankSum=-3.844;QD=3.69;ReadPosRankSum=1.199;SOR=2.833;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.47143C>T|p.Leu15715Phe|47143/53802|47143/53802|15715/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,13:39:99:172,0,748	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	47985	.	C	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.721;HaplotypeScore=3.8935;MLEAC=1;MLEAF=0.500;MQ=44.73;MQ0=5;MQRankSum=-1.943;QD=1.65;ReadPosRankSum=1.099;SOR=2.712;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.47157C>G|p.Phe15719Leu|47157/53802|47157/53802|15719/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,4:35:86:86,0,658	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	48074	.	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DP=49;Dels=0.00;ExcessHet=3.0103;FS=3.763;HaplotypeScore=5.8259;MLEAC=1;MLEAF=0.500;MQ=50.69;MQ0=3;MQRankSum=-4.986;QD=1.59;ReadPosRankSum=0.506;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.47246G>A|p.Gly15749Asp|47246/53802|47246/53802|15749/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,11:49:99:106,0,1034	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	48111	.	T	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DP=48;Dels=0.00;ExcessHet=3.0103;FS=7.593;HaplotypeScore=1.9915;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=2;MQRankSum=-5.430;QD=5.20;ReadPosRankSum=1.348;SOR=1.894;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.47283T>C|p.Arg15761Arg|47283/53802|47283/53802|15761/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,17:48:99:278,0,953	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	48141	.	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DP=51;Dels=0.00;ExcessHet=3.0103;FS=18.718;HaplotypeScore=4.7461;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=2;MQRankSum=-6.525;QD=2.74;ReadPosRankSum=-0.503;SOR=3.431;ANN=G|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.47313A>G|p.Ter15771Trpext*?|47313/53802|47313/53802|15771/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:40,11:51:99:168,0,1128	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	48155	.	T	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;DP=45;Dels=0.00;ExcessHet=3.0103;FS=12.979;HaplotypeScore=5.8668;MLEAC=1;MLEAF=0.500;MQ=53.32;MQ0=2;MQRankSum=-5.586;QD=1.13;ReadPosRankSum=-1.983;SOR=2.817;ANN=A|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.47327T>A|p.Leu15776*|47327/53802|47327/53802|15776/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,8:45:79:79,0,1098	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49548	.	T	G	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=-0.698;QD=0.61;ReadPosRankSum=-1.738;SOR=0.399;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48720T>G|p.Ser16240Arg|48720/53802|48720/53802|16240/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,3:23:42:42,0,517	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49579	.	G	C	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=2.9156;MLEAC=1;MLEAF=0.500;MQ=55.73;MQ0=0;MQRankSum=-1.785;QD=0.43;ReadPosRankSum=-0.271;SOR=0.283;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48751G>C|p.Val16251Leu|48751/53802|48751/53802|16251/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:27:38:38,0,582	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49593	.	A	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9910;MLEAC=1;MLEAF=0.500;MQ=54.69;MQ0=0;MQRankSum=-4.421;QD=1.70;ReadPosRankSum=-2.381;SOR=0.735;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48765A>T|p.Lys16255Asn|48765/53802|48765/53802|16255/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,7:31:74:74,0,590	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49610	.	A	AC	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-4.467;QD=5.49;ReadPosRankSum=0.928;SOR=0.467;ANN=AC|frameshift_variant|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48782_48783insC|p.Gln16261fs|48783/53802|48783/53802|16261/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|1|1.00)	GT:AD:DP:GQ:PL	0/1:21,9:30:99:202,0,859	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49612	.	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-4.844;QD=3.93;ReadPosRankSum=0.843;SOR=0.551;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48784T>C|p.Leu16262Leu|48784/53802|48784/53802|16262/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,12:33:99:158,0,617	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49613	.	T	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.55;MQ0=0;MQRankSum=-5.031;QD=3.71;ReadPosRankSum=1.357;SOR=0.741;ANN=A|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48785T>A|p.Leu16262*|48785/53802|48785/53802|16262/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,12:35:99:158,0,617	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49682	.	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=53.07;MQ0=0;MQRankSum=-5.861;QD=3.26;ReadPosRankSum=-0.500;SOR=0.795;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48854A>G|p.Asn16285Ser|48854/53802|48854/53802|16285/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,14:38:99:152,0,697	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	49703	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.97;MQ0=0;MQRankSum=-5.814;QD=1.02;ReadPosRankSum=-0.146;SOR=0.813;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.48875T>C|p.Ile16292Thr|48875/53802|48875/53802|16292/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,9:36:65:65,0,785	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	50069	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5184;MLEAC=1;MLEAF=0.500;MQ=54.66;MQ0=0;MQRankSum=-4.114;QD=0.61;ReadPosRankSum=-1.721;SOR=0.576;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.49241C>T|p.Ala16414Val|49241/53802|49241/53802|16414/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,6:38:50:50,0,923	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	50083	.	C	A	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=-3.543;QD=0.51;ReadPosRankSum=-0.103;SOR=0.634;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.49255C>A|p.Gln16419Lys|49255/53802|49255/53802|16419/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,6:37:47:47,0,961	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	50091	.	G	C	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8306;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=-3.388;QD=0.62;ReadPosRankSum=0.635;SOR=0.631;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.49263G>C|p.Glu16421Asp|49263/53802|49263/53802|16421/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,6:35:50:50,0,952	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	50135	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=0;MQRankSum=-3.224;QD=1.02;ReadPosRankSum=1.028;SOR=0.317;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.49307G>A|p.Gly16436Glu|49307/53802|49307/53802|16436/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,6:33:62:62,0,787	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	51169	.	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.2632;MLEAC=1;MLEAF=0.500;MQ=44.19;MQ0=3;MQRankSum=-0.041;QD=1.12;ReadPosRankSum=1.522;SOR=0.582;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.50341C>T|p.Arg16781Cys|50341/53802|50341/53802|16781/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,8:41:74:74,0,653	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	51286	.	T	C	12.05	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=1;MQRankSum=-3.222;QD=0.45;ReadPosRankSum=-2.090;SOR=1.053;ANN=C|stop_lost|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.50458T>C|p.Ter16820Argext*?|50458/53802|50458/53802|16820/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,4:27:40:40,0,630	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	51668	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8937;MLEAC=1;MLEAF=0.500;MQ=44.56;MQ0=4;MQRankSum=-1.908;QD=1.58;ReadPosRankSum=-1.307;SOR=0.582;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.50840G>A|p.Cys16947Tyr|50840/53802|50840/53802|16947/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:27:71:71,0,562	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	51675	.	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8180;MLEAC=1;MLEAF=0.500;MQ=45.09;MQ0=4;MQRankSum=-3.140;QD=3.51;ReadPosRankSum=-0.729;SOR=0.425;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.50847G>T|p.Met16949Ile|50847/53802|50847/53802|16949/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,9:29:99:130,0,461	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	51767	.	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DP=41;Dels=0.00;ExcessHet=3.0103;FS=9.652;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=53.76;MQ0=3;MQRankSum=-6.015;QD=1.51;ReadPosRankSum=-0.339;SOR=1.465;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.50939A>G|p.Lys16980Arg|50939/53802|50939/53802|16980/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,10:41:90:90,0,881	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	51777	.	A	G	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.010;HaplotypeScore=6.6471;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=3;MQRankSum=-5.216;QD=0.67;ReadPosRankSum=-1.752;SOR=1.163;ANN=G|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.50949A>G|p.Arg16983Arg|50949/53802|50949/53802|16983/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,7:40:55:55,0,884	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	52128	.	T	C	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.696;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-4.310;QD=0.58;ReadPosRankSum=-1.823;SOR=1.465;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.51300T>C|p.Thr17100Thr|51300/53802|51300/53802|17100/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:24:42:42,0,511	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	52148	.	C	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.406;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=0;MQRankSum=-4.477;QD=2.66;ReadPosRankSum=-1.808;SOR=0.138;ANN=A|stop_gained|HIGH|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.51320C>A|p.Ser17107*|51320/53802|51320/53802|17107/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,8:24:92:92,0,433	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	52217	.	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=2;MQRankSum=-3.361;QD=5.65;ReadPosRankSum=1.531;SOR=0.446;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.51389T>C|p.Phe17130Ser|51389/53802|51389/53802|17130/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:113,0,150	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	52219	.	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=2;MQRankSum=-3.361;QD=5.65;ReadPosRankSum=1.448;SOR=0.446;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.51391A>G|p.Thr17131Ala|51391/53802|51391/53802|17131/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:113,0,150	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	52272	.	A	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.86;MQ0=2;MQRankSum=-2.450;QD=4.28;ReadPosRankSum=-2.450;SOR=1.447;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.51444A>T|p.Leu17148Phe|51444/53802|51444/53802|17148/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,4:10:71:71,0,114	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	54539	.	T	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8214;MLEAC=1;MLEAF=0.500;MQ=47.72;MQ0=6;MQRankSum=-2.169;QD=3.90;ReadPosRankSum=3.242;SOR=0.838;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.53711T>A|p.Phe17904Tyr|53711/53802|53711/53802|17904/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,10:34:99:161,0,484	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	54585	.	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6219;MLEAC=1;MLEAF=0.500;MQ=47.08;MQ0=3;MQRankSum=-2.868;QD=2.14;ReadPosRankSum=-1.535;SOR=0.804;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.53757C>T|p.Ser17919Ser|53757/53802|53757/53802|17919/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,8:27:86:86,0,473	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	54592	.	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6219;MLEAC=1;MLEAF=0.500;MQ=47.61;MQ0=3;MQRankSum=-4.573;QD=3.53;ReadPosRankSum=-0.736;SOR=0.459;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_829_54630|GENE_EXON_scaffold3818_cov65_829_54630|transcript|Soaet10009017|protein_coding|1/1|c.53764A>G|p.Ile17922Val|53764/53802|53764/53802|17922/17933||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:127,0,469	scaffold3818_cov65	GLEAN	mRNA	829	54630	0.97	+	.	ID=Soaet10009017
scaffold3818_cov65	152974	.	A	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.355;HaplotypeScore=2.9964;MLEAC=1;MLEAF=0.500;MQ=47.96;MQ0=3;MQRankSum=-5.163;QD=0.87;ReadPosRankSum=2.265;SOR=1.749;ANN=C|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.531T>G|p.Thr177Thr|531/708|531/708|177/235||	GT:AD:DP:GQ:PL	0/1:42,13:55:76:76,0,1140	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	152980	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.427;HaplotypeScore=1.9972;MLEAC=1;MLEAF=0.500;MQ=48.17;MQ0=3;MQRankSum=-5.205;QD=0.86;ReadPosRankSum=1.606;SOR=1.883;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.525C>T|p.Ala175Ala|525/708|525/708|175/235||	GT:AD:DP:GQ:PL	0/1:40,13:54:74:74,0,1140	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	152983	.	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.377;HaplotypeScore=1.9972;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=3;MQRankSum=-5.145;QD=0.81;ReadPosRankSum=1.716;SOR=1.911;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.522C>T|p.Asn174Asn|522/708|522/708|174/235||	GT:AD:DP:GQ:PL	0/1:42,13:55:73:73,0,1228	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153016	.	T	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.288;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=49.13;MQ0=2;MQRankSum=-4.930;QD=2.95;ReadPosRankSum=-0.602;SOR=2.303;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.489A>T|p.Ser163Ser|489/708|489/708|163/235||	GT:AD:DP:GQ:PL	0/1:34,12:46:99:164,0,1022	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153049	.	G	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.281;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=48.53;MQ0=1;MQRankSum=-5.035;QD=0.88;ReadPosRankSum=-1.426;SOR=0.786;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.456C>G|p.Ser152Arg|456/708|456/708|152/235||	GT:AD:DP:GQ:PL	0/1:42,12:54:76:76,0,1182	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153118	.	A	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DP=48;Dels=0.00;ExcessHet=3.0103;FS=5.517;HaplotypeScore=5.7390;MLEAC=1;MLEAF=0.500;MQ=52.45;MQ0=3;MQRankSum=-5.953;QD=2.27;ReadPosRankSum=2.651;SOR=0.846;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.387T>A|p.Ser129Ser|387/708|387/708|129/235||	GT:AD:DP:GQ:PL	0/1:35,13:48:99:137,0,1072	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153142	.	A	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.8217;MLEAC=1;MLEAF=0.500;MQ=50.77;MQ0=3;MQRankSum=-4.947;QD=1.44;ReadPosRankSum=-1.031;SOR=0.910;ANN=T|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.363T>A|p.Pro121Pro|363/708|363/708|121/235||	GT:AD:DP:GQ:PL	0/1:37,12:49:99:99,0,1100	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153144	.	G	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.588;HaplotypeScore=9.8264;MLEAC=1;MLEAF=0.500;MQ=50.77;MQ0=3;MQRankSum=-6.225;QD=1.86;ReadPosRankSum=-1.869;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.361C>A|p.Pro121Thr|361/708|361/708|121/235||	GT:AD:DP:GQ:PL	0/1:33,11:49:99:110,0,1044	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153151	.	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.457;HaplotypeScore=14.8160;MLEAC=1;MLEAF=0.500;MQ=49.28;MQ0=6;MQRankSum=-4.834;QD=1.05;ReadPosRankSum=-0.814;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.354G>T|p.Val118Val|354/708|354/708|118/235||	GT:AD:DP:GQ:PL	0/1:43,12:55:86:86,0,1241	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153195	.	T	A	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;DP=72;Dels=0.00;ExcessHet=3.0103;FS=14.204;HaplotypeScore=15.8146;MLEAC=1;MLEAF=0.500;MQ=45.96;MQ0=9;MQRankSum=-7.102;QD=12.71;ReadPosRankSum=-1.454;SOR=1.565;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.310A>T|p.Arg104Trp|310/708|310/708|104/235||	GT:AD:DP:GQ:PL	0/1:28,44:72:99:943,0,806	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153200	.	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;DP=73;Dels=0.00;ExcessHet=3.0103;FS=8.981;HaplotypeScore=14.3973;MLEAC=1;MLEAF=0.500;MQ=46.13;MQ0=9;MQRankSum=-1.812;QD=0.81;ReadPosRankSum=-1.044;SOR=2.397;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.305G>A|p.Ser102Asn|305/708|305/708|102/235||	GT:AD:DP:GQ:PL	0/1:63,10:73:87:87,0,1647	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153224	.	G	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.541;HaplotypeScore=41.5942;MLEAC=1;MLEAF=0.500;MQ=45.36;MQ0=9;MQRankSum=-2.677;QD=1.46;ReadPosRankSum=-0.161;SOR=1.094;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.281C>A|p.Ser94Tyr|281/708|281/708|94/235||	GT:AD:DP:GQ:PL	0/1:70,14:84:99:151,0,1700	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153227	.	T	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;DP=80;Dels=0.00;ExcessHet=3.0103;FS=9.551;HaplotypeScore=42.5101;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=9;MQRankSum=-2.593;QD=4.43;ReadPosRankSum=0.046;SOR=1.673;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.278A>C|p.Lys93Thr|278/708|278/708|93/235||	GT:AD:DP:GQ:PL	0/1:58,21:80:99:378,0,1361	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153230	.	G	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DP=81;Dels=0.00;ExcessHet=3.0103;FS=5.502;HaplotypeScore=42.3843;MLEAC=1;MLEAF=0.500;MQ=44.32;MQ0=9;MQRankSum=-1.939;QD=3.97;ReadPosRankSum=-0.742;SOR=1.336;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.275C>G|p.Pro92Arg|275/708|275/708|92/235||	GT:AD:DP:GQ:PL	0/1:60,21:81:99:350,0,1495	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153255	.	T	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;DP=86;Dels=0.00;ExcessHet=3.0103;FS=3.221;HaplotypeScore=8.4908;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=9;MQRankSum=-1.528;QD=0.54;ReadPosRankSum=1.215;SOR=1.405;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.250A>T|p.Ser84Cys|250/708|250/708|84/235||	GT:AD:DP:GQ:PL	0/1:71,15:86:75:75,0,1759	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153292	.	G	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.1483;MLEAC=1;MLEAF=0.500;MQ=43.18;MQ0=10;MQRankSum=-3.661;QD=4.14;ReadPosRankSum=-0.535;SOR=0.831;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.213C>T|p.Val71Val|213/708|213/708|71/235||	GT:AD:DP:GQ:PL	0/1:58,29:87:99:388,0,1185	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153294	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.016;HaplotypeScore=25.6955;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=10;MQRankSum=-2.862;QD=2.09;ReadPosRankSum=0.230;SOR=0.489;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.211G>A|p.Val71Ile|211/708|211/708|71/235||	GT:AD:DP:GQ:PL	0/1:69,20:89:99:214,0,1470	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153362	.	T	C	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DP=57;Dels=0.00;ExcessHet=3.0103;FS=17.884;HaplotypeScore=10.4348;MLEAC=1;MLEAF=0.500;MQ=45.45;MQ0=5;MQRankSum=-6.205;QD=11.46;ReadPosRankSum=-0.009;SOR=2.824;ANN=C|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.143A>G|p.Asp48Gly|143/708|143/708|48/235||	GT:AD:DP:GQ:PL	0/1:23,33:57:99:670,0,631	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153384	.	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.188;HaplotypeScore=13.5782;MLEAC=1;MLEAF=0.500;MQ=46.46;MQ0=5;MQRankSum=-1.651;QD=1.03;ReadPosRankSum=0.708;SOR=2.364;ANN=T|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.121G>A|p.Asp41Asn|121/708|121/708|41/235||	GT:AD:DP:GQ:PL	0/1:47,5:52:82:82,0,1152	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153389	.	C	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;DP=53;Dels=0.00;ExcessHet=3.0103;FS=20.185;HaplotypeScore=13.5782;MLEAC=1;MLEAF=0.500;MQ=46.65;MQ0=5;MQRankSum=-6.304;QD=8.26;ReadPosRankSum=1.595;SOR=3.538;ANN=G|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.116G>C|p.Ser39Thr|116/708|116/708|39/235||	GT:AD:DP:GQ:PL	0/1:26,26:53:99:458,0,744	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153413	.	T	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.444;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=46.43;MQ0=3;MQRankSum=-2.282;QD=0.39;ReadPosRankSum=0.553;SOR=1.781;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.92A>T|p.Asn31Ile|92/708|92/708|31/235||	GT:AD:DP:GQ:PL	0/1:36,7:43:45:45,0,1017	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153441	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.548;HaplotypeScore=18.1902;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=1;MQRankSum=-2.487;QD=0.64;ReadPosRankSum=-1.190;SOR=1.765;ANN=A|missense_variant|MODERATE|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.64C>T|p.His22Tyr|64/708|64/708|22/235||	GT:AD:DP:GQ:PL	0/1:34,5:39:53:53,0,956	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold3818_cov65	153478	.	T	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;DP=25;Dels=0.00;ExcessHet=3.0103;FS=9.118;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=53.18;MQ0=0;MQRankSum=-3.652;QD=3.31;ReadPosRankSum=-0.544;SOR=3.258;ANN=A|synonymous_variant|LOW|EXON_scaffold3818_cov65_152797_153504|GENE_EXON_scaffold3818_cov65_152797_153504|transcript|Soaet10009019|protein_coding|1/1|c.27A>T|p.Thr9Thr|27/708|27/708|9/235||	GT:AD:DP:GQ:PL	0/1:20,5:25:99:111,0,593	scaffold3818_cov65	GLEAN	mRNA	152797	153504	0.75	-	.	ID=Soaet10009019
scaffold5872_cov61	21022	.	T	C	355.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=25.41;SOR=1.765;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.35T>C|p.Leu12Ser|35/4788|35/4788|12/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:27:384,27,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21071	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;DP=23;Dels=0.00;ExcessHet=3.0103;FS=13.365;HaplotypeScore=3.9155;MLEAC=1;MLEAF=0.500;MQ=43.75;MQ0=1;MQRankSum=0.170;QD=10.21;ReadPosRankSum=2.074;SOR=0.013;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.84C>T|p.Tyr28Tyr|84/4788|84/4788|28/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:263,0,278	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21080	.	A	G	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;DP=25;Dels=0.00;ExcessHet=3.0103;FS=12.852;HaplotypeScore=2.9156;MLEAC=1;MLEAF=0.500;MQ=42.28;MQ0=1;MQRankSum=0.333;QD=9.71;ReadPosRankSum=-0.627;SOR=3.912;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.93A>G|p.Glu31Glu|93/4788|93/4788|31/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,9:25:99:271,0,317	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21148	.	G	C	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;DP=38;Dels=0.00;ExcessHet=3.0103;FS=12.415;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=38.20;MQ0=3;MQRankSum=1.546;QD=12.99;ReadPosRankSum=1.156;SOR=3.781;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.161G>C|p.Cys54Ser|161/4788|161/4788|54/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:522,0,362	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21156	.	G	T	956.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=3;QD=25.18;SOR=2.649;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.169G>T|p.Val57Phe|169/4788|169/4788|57/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:39:75:985,75,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21170	.	G	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.556;HaplotypeScore=8.5786;MLEAC=1;MLEAF=0.500;MQ=38.31;MQ0=3;MQRankSum=0.879;QD=1.46;ReadPosRankSum=0.831;SOR=1.445;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.183G>C|p.Leu61Phe|183/4788|183/4788|61/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:35,4:39:85:85,0,807	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21174	.	C	A	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DP=40;Dels=0.00;ExcessHet=3.0103;FS=6.412;HaplotypeScore=8.6600;MLEAC=1;MLEAF=0.500;MQ=39.78;MQ0=3;MQRankSum=0.706;QD=12.57;ReadPosRankSum=0.397;SOR=2.461;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.187C>A|p.Gln63Lys|187/4788|187/4788|63/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,20:40:99:531,0,363	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21272	.	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=42.68;MQ0=5;MQRankSum=1.020;QD=1.57;ReadPosRankSum=-0.080;SOR=1.008;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.285A>G|p.Leu95Leu|285/4788|285/4788|95/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:46,6:52:99:110,0,1047	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21335	.	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833;DP=50;Dels=0.00;ExcessHet=3.0103;FS=14.121;HaplotypeScore=10.4431;MLEAC=1;MLEAF=0.500;MQ=34.31;MQ0=7;MQRankSum=-0.216;QD=3.96;ReadPosRankSum=-0.390;SOR=3.655;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.348C>T|p.Cys116Cys|348/4788|348/4788|116/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:42,8:50:99:226,0,809	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21342	.	T	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DP=50;Dels=0.00;ExcessHet=3.0103;FS=5.435;HaplotypeScore=11.5233;MLEAC=1;MLEAF=0.500;MQ=34.31;MQ0=7;MQRankSum=0.378;QD=0.62;ReadPosRankSum=-0.418;SOR=2.232;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.355T>G|p.Ser119Ala|355/4788|355/4788|119/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:46,4:50:59:59,0,951	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21351	.	G	C	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.593;HaplotypeScore=9.4707;MLEAC=1;MLEAF=0.500;MQ=33.54;MQ0=8;MQRankSum=-1.503;QD=0.40;ReadPosRankSum=0.883;SOR=3.160;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.364G>C|p.Glu122Gln|364/4788|364/4788|122/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:49,5:54:50:50,0,1003	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21369	.	C	G	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;DP=46;Dels=0.00;ExcessHet=3.0103;FS=5.711;HaplotypeScore=14.1558;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=8;MQRankSum=0.528;QD=0.54;ReadPosRankSum=-0.162;SOR=2.331;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.382C>G|p.Pro128Ala|382/4788|382/4788|128/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:43,3:46:53:53,0,771	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21410	.	C	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DP=41;Dels=0.00;ExcessHet=3.0103;FS=8.852;HaplotypeScore=9.3212;MLEAC=1;MLEAF=0.500;MQ=31.35;MQ0=5;MQRankSum=-0.313;QD=5.53;ReadPosRankSum=1.312;SOR=1.456;ANN=A|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.423C>A|p.Ala141Ala|423/4788|423/4788|141/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,17:41:99:244,0,468	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21426	.	G	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.960;HaplotypeScore=15.5581;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=5;MQRankSum=1.621;QD=4.24;ReadPosRankSum=-0.334;SOR=1.809;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.439G>C|p.Asp147His|439/4788|439/4788|147/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,8:40:99:198,0,467	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21432	.	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;DP=40;Dels=0.00;ExcessHet=3.0103;FS=8.846;HaplotypeScore=12.5638;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=5;MQRankSum=-1.797;QD=1.64;ReadPosRankSum=-1.178;SOR=1.750;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.445T>C|p.Tyr149His|445/4788|445/4788|149/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,11:40:92:92,0,542	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21433	.	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DP=40;Dels=0.00;ExcessHet=3.0103;FS=18.524;HaplotypeScore=12.5638;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=5;MQRankSum=-1.211;QD=1.29;ReadPosRankSum=-2.431;SOR=3.898;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.446A>G|p.Tyr149Cys|446/4788|446/4788|149/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,8:40:80:80,0,622	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21520	.	C	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.748;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=12;MQRankSum=-1.355;QD=8.19;ReadPosRankSum=-0.350;SOR=0.387;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.533C>T|p.Ser178Leu|533/4788|533/4788|178/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,22:36:99:323,0,194	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21635	.	G	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0857;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=6;MQRankSum=-2.406;QD=6.48;ReadPosRankSum=-0.248;SOR=0.722;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.648G>C|p.Glu216Asp|648/4788|648/4788|216/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,23:37:99:268,0,279	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21648	.	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5335;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=6;MQRankSum=-2.493;QD=7.18;ReadPosRankSum=-0.545;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.661A>G|p.Met221Val|661/4788|661/4788|221/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,23:38:99:301,0,321	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21650	.	G	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7447;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=5;MQRankSum=-2.682;QD=6.94;ReadPosRankSum=-0.166;SOR=0.569;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.663G>A|p.Met221Ile|663/4788|663/4788|221/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,22:38:99:292,0,329	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21659	.	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8314;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=6;MQRankSum=1.686;QD=6.21;ReadPosRankSum=0.978;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.672A>G|p.Ile224Met|672/4788|672/4788|224/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,12:41:99:283,0,355	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21674	.	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4677;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=5;MQRankSum=-2.759;QD=6.38;ReadPosRankSum=-1.241;SOR=0.714;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.687C>T|p.Asp229Asp|687/4788|687/4788|229/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,26:42:99:296,0,324	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21711	.	T	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=4;MQRankSum=-2.606;QD=8.24;ReadPosRankSum=-0.935;SOR=0.804;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.724T>C|p.Tyr242His|724/4788|724/4788|242/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,20:32:99:292,0,239	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21745	.	T	C	515.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9987;MLEAC=1;MLEAF=0.500;MQ=30.54;MQ0=3;MQRankSum=-1.606;QD=16.12;ReadPosRankSum=0.086;SOR=1.528;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.758T>C|p.Leu253Ser|758/4788|758/4788|253/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,28:32:0:541,0,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21746	.	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9987;MLEAC=1;MLEAF=0.500;MQ=31.08;MQ0=3;MQRankSum=1.568;QD=2.78;ReadPosRankSum=-0.259;SOR=1.508;ANN=A|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.759G>A|p.Leu253Leu|759/4788|759/4788|253/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,7:33:99:120,0,396	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21782	.	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=1;MQRankSum=-1.746;QD=11.51;ReadPosRankSum=0.609;SOR=0.412;ANN=C|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.795T>C|p.Ser265Ser|795/4788|795/4788|265/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,20:27:99:339,0,155	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21831	.	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=30.48;MQ0=2;MQRankSum=2.029;QD=3.04;ReadPosRankSum=0.053;SOR=1.819;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.844C>T|p.His282Tyr|844/4788|844/4788|282/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,5:20:89:89,0,213	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	21887	.	C	G	56.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=2;MQRankSum=-0.967;QD=7.09;ReadPosRankSum=-0.674;SOR=0.368;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.900C>G|p.Ser300Ser|900/4788|900/4788|300/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,7:8:6:84,6,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22611	.	C	T	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=4.65;SOR=1.609;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1624C>T|p.Leu542Leu|1624/4788|1624/4788|542/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22625	.	A	G	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=4.65;SOR=1.609;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1638A>G|p.Gln546Gln|1638/4788|1638/4788|546/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22638	.	G	A	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=4.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1651G>A|p.Glu551Lys|1651/4788|1651/4788|551/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22641	.	C	T	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=4.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1654C>T|p.His552Tyr|1654/4788|1654/4788|552/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22642	.	A	G	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=4.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1655A>G|p.His552Arg|1655/4788|1655/4788|552/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22650	.	G	T	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=4.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1663G>T|p.Gly555Trp|1663/4788|1663/4788|555/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22658	.	G	C	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=4.65;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1671G>C|p.Lys557Asn|1671/4788|1671/4788|557/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22963	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1976C>T|p.Pro659Leu|1976/4788|1976/4788|659/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4767G>A|||||4767|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22965	.	A	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1978A>C|p.Asn660His|1978/4788|1978/4788|660/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4765T>G|||||4765|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22973	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1986G>A|p.Lys662Lys|1986/4788|1986/4788|662/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4757C>T|||||4757|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	22981	.	G	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.1994G>C|p.Arg665Thr|1994/4788|1994/4788|665/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4749C>G|||||4749|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23055	.	G	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2068G>C|p.Glu690Gln|2068/4788|2068/4788|690/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4675C>G|||||4675|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23057	.	G	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2070G>T|p.Glu690Asp|2070/4788|2070/4788|690/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4673C>A|||||4673|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23065	.	T	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2078T>A|p.Val693Asp|2078/4788|2078/4788|693/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4665A>T|||||4665|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23082	.	C	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2095C>G|p.His699Asp|2095/4788|2095/4788|699/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4648G>C|||||4648|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23108	.	A	G	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=9.30;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2121A>G|p.Val707Val|2121/4788|2121/4788|707/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4622T>C|||||4622|	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23113	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2126A>G|p.His709Arg|2126/4788|2126/4788|709/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4617T>C|||||4617|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23130	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2143G>A|p.Glu715Lys|2143/4788|2143/4788|715/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4600C>T|||||4600|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23137	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2150T>C|p.Ile717Thr|2150/4788|2150/4788|717/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4593A>G|||||4593|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23140	.	C	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2153C>G|p.Ala718Gly|2153/4788|2153/4788|718/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4590G>C|||||4590|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23141	.	T	A	13.72	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=13.72;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2154T>A|p.Ala718Ala|2154/4788|2154/4788|718/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4589A>T|||||4589|	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	23167	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=15.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.2180G>A|p.Gly727Asp|2180/4788|2180/4788|727/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*4563C>T|||||4563|	GT:AD:DP:GQ:PL	1/1:0,1:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	24564	.	T	C	38.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=19.37;SOR=2.303;ANN=C|stop_lost|HIGH|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.3577T>C|p.Ter1193Glnext*?|3577/4788|3577/4788|1193/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-3611T>C|||||3611|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*3166A>G|||||3166|	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	24724	.	A	G	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=31.28;MQ0=2;MQRankSum=-1.383;QD=4.80;ReadPosRankSum=0.000;SOR=2.303;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.3737A>G|p.Tyr1246Cys|3737/4788|3737/4788|1246/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-3451A>G|||||3451|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*3006T>C|||||3006|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4945T>C|||||4945|	GT:AD:DP:GQ:PL	0/1:4,2:6:36:57,0,36	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	24819	.	T	C	57.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=19.25;SOR=1.179;ANN=C|stop_lost|HIGH|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.3832T>C|p.Ter1278Glnext*?|3832/4788|3832/4788|1278/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-3356T>C|||||3356|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2911A>G|||||2911|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4850A>G|||||4850|	GT:AD:DP:GQ:PL	1/1:0,3:3:6:85,6,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	24855	.	C	T	57.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=1;QD=14.44;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.3868C>T|p.Leu1290Phe|3868/4788|3868/4788|1290/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-3320C>T|||||3320|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2875G>A|||||2875|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4814G>A|||||4814|	GT:AD:DP:GQ:PL	1/1:1,3:4:6:85,6,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25122	.	G	A	10.23	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=12.23;MQ0=3;MQRankSum=1.180;QD=1.02;ReadPosRankSum=1.068;SOR=0.446;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4135G>A|p.Gly1379Ser|4135/4788|4135/4788|1379/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-3053G>A|||||3053|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2608C>T|||||2608|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4547C>T|||||4547|	GT:AD:DP:GQ:PL	0/1:6,4:10:21:38,0,21	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25208	.	T	C	33.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.34;MQ0=3;MQRankSum=1.465;QD=3.08;ReadPosRankSum=-0.405;SOR=1.447;ANN=C|synonymous_variant|LOW|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4221T>C|p.Tyr1407Tyr|4221/4788|4221/4788|1407/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-2967T>C|||||2967|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2522A>G|||||2522|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4461A>G|||||4461|	GT:AD:DP:GQ:PL	0/1:5,6:11:17:62,0,17	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25364	.	T	A	44.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.18;MQ0=14;MQRankSum=1.036;QD=2.25;ReadPosRankSum=-0.598;SOR=2.093;ANN=A|stop_gained|HIGH|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4377T>A|p.Tyr1459*|4377/4788|4377/4788|1459/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-2811T>A|||||2811|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2366A>T|||||2366|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4305A>T|||||4305|	GT:AD:DP:GQ:PL	0/1:15,5:20:15:73,0,15	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25402	.	A	G	176.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.35;MQ0=25;MQRankSum=1.723;QD=4.90;ReadPosRankSum=-1.834;SOR=3.611;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4415A>G|p.Lys1472Arg|4415/4788|4415/4788|1472/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-2773A>G|||||2773|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2328T>C|||||2328|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4267T>C|||||4267|	GT:AD:DP:GQ:PL	0/1:24,12:36:3:203,0,3	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25413	.	C	T	246.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.736;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.30;MQ0=28;MQRankSum=1.985;QD=6.02;ReadPosRankSum=-1.947;SOR=2.494;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4426C>T|p.Leu1476Phe|4426/4788|4426/4788|1476/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-2762C>T|||||2762|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2317G>A|||||2317|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4256G>A|||||4256|	GT:AD:DP:GQ:PL	0/1:29,12:41:0:272,0,0	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25651	.	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=150;Dels=0.00;ExcessHet=3.0103;FS=3.369;HaplotypeScore=8.1444;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=85;MQRankSum=1.405;QD=0.48;ReadPosRankSum=1.508;SOR=1.792;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4664G>A|p.Arg1555Lys|4664/4788|4664/4788|1555/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-2524G>A|||||2524|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2079C>T|||||2079|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*4018C>T|||||4018|	GT:AD:DP:GQ:PL	0/1:139,9:150:99:99,0,948	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25711	.	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=137;Dels=0.00;ExcessHet=3.0103;FS=5.722;HaplotypeScore=10.8702;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=55;MQRankSum=-1.976;QD=2.07;ReadPosRankSum=-1.139;SOR=0.977;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4724C>T|p.Ala1575Val|4724/4788|4724/4788|1575/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-2464C>T|||||2464|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*2019G>A|||||2019|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*3958G>A|||||3958|	GT:AD:DP:GQ:PL	0/1:102,31:137:99:303,0,929	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	25775	.	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9905;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=12;MQRankSum=-2.221;QD=6.97;ReadPosRankSum=2.069;SOR=0.641;ANN=G|stop_lost&splice_region_variant|HIGH|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding|1/1|c.4788A>G|p.Ter1596Trpext*?|4788/4788|4788/4788|1596/1595||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-2400A>G|||||2400|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.*1955T>C|||||1955|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*3894T>C|||||3894|	GT:AD:DP:GQ:PL	0/1:29,43:72:99:530,0,537	scaffold5872_cov61	GLEAN	mRNA	20988	25775	0.61	+	.	ID=Soaet10009157
scaffold5872_cov61	27786	.	T	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=48.27;MQ0=0;MQRankSum=-3.044;QD=12.25;ReadPosRankSum=-0.906;SOR=0.859;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding|1/1|c.178A>G|p.Lys60Glu|178/234|178/234|60/77||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.-389T>C|||||389|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2011T>C|||||2011|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1883A>G|||||1883|	GT:AD:DP:GQ:PL	0/1:7,8:15:99:212,0,165	scaffold5872_cov61	GLEAN	mRNA	27730	27963	0.97	-	.	ID=Soaet10009158
scaffold5872_cov61	28193	.	G	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=0.671;QD=5.61;ReadPosRankSum=-0.289;SOR=0.760;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.19G>C|p.Asp7His|19/1938|19/1938|7/645||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-230C>G|||||230|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2418G>C|||||2418|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1476C>G|||||1476|	GT:AD:DP:GQ:PL	0/1:16,5:22:99:146,0,512	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28203	.	T	C	794.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=26.12;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.29T>C|p.Ile10Thr|29/1938|29/1938|10/645||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-240A>G|||||240|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2428T>C|||||2428|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1466A>G|||||1466|	GT:AD:DP:GQ:PL	1/1:0,22:22:60:823,60,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28260	.	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DP=24;Dels=0.00;ExcessHet=3.0103;FS=6.204;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=0.722;QD=9.66;ReadPosRankSum=0.879;SOR=1.527;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.86C>T|p.Pro29Leu|86/1938|86/1938|29/645||,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-297G>A|||||297|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2485C>T|||||2485|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1409G>A|||||1409|	GT:AD:DP:GQ:PL	0/1:14,10:24:99:260,0,398	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28304	.	G	A	795.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=2;QD=27.44;SOR=0.922;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.130G>A|p.Asp44Asn|130/1938|130/1938|44/645||,A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-341C>T|||||341|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2529G>A|||||2529|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1365C>T|||||1365|	GT:AD:DP:GQ:PL	1/1:0,29:29:60:824,60,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28325	.	G	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2693;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=2;MQRankSum=0.882;QD=8.81;ReadPosRankSum=-2.479;SOR=1.085;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.151G>C|p.Val51Leu|151/1938|151/1938|51/645||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-362C>G|||||362|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2550G>C|||||2550|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1344C>G|||||1344|	GT:AD:DP:GQ:PL	0/1:18,10:28:99:275,0,386	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28348	.	T	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=2;MQRankSum=0.129;QD=12.35;ReadPosRankSum=0.776;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.174T>A|p.Thr58Thr|174/1938|174/1938|58/645||,A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-385A>T|||||385|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2573T>A|||||2573|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1321A>T|||||1321|	GT:AD:DP:GQ:PL	0/1:10,15:25:99:337,0,273	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28349	.	C	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=55.60;MQ0=2;MQRankSum=0.610;QD=11.84;ReadPosRankSum=0.986;SOR=0.976;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.175C>G|p.Pro59Ala|175/1938|175/1938|59/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-386G>C|||||386|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2574C>G|||||2574|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1320G>C|||||1320|	GT:AD:DP:GQ:PL	0/1:11,15:26:99:336,0,312	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28436	.	G	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.200;HaplotypeScore=3.9499;MLEAC=1;MLEAF=0.500;MQ=51.32;MQ0=0;MQRankSum=2.810;QD=11.35;ReadPosRankSum=0.512;SOR=1.863;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.262G>C|p.Glu88Gln|262/1938|262/1938|88/645||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-473C>G|||||473|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2661G>C|||||2661|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1233C>G|||||1233|	GT:AD:DP:GQ:PL	0/1:14,8:22:99:278,0,372	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28446	.	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9472;MLEAC=1;MLEAF=0.500;MQ=51.78;MQ0=0;MQRankSum=-2.123;QD=14.77;ReadPosRankSum=-1.229;SOR=0.432;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.272G>A|p.Arg91Gln|272/1938|272/1938|91/645||,A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-483C>T|||||483|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2671G>A|||||2671|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1223C>T|||||1223|	GT:AD:DP:GQ:PL	0/1:9,14:23:99:368,0,309	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28471	.	GA	G	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.59;MQ0=0;MQRankSum=-2.342;QD=15.32;ReadPosRankSum=-1.869;SOR=0.527;ANN=G|frameshift_variant|HIGH|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.298delA|p.Ile100fs|298/1938|298/1938|100/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-509delT|||||509|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2697delA|||||2697|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1197delT|||||1197|;LOF=(EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|1|1.00)	GT:AD:DP:GQ:PL	0/1:10,11:21:99:359,0,391	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28473	.	T	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=50.59;MQ0=1;MQRankSum=-2.679;QD=13.28;ReadPosRankSum=-1.148;SOR=0.511;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.299T>G|p.Ile100Ser|299/1938|299/1938|100/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-510A>C|||||510|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2698T>G|||||2698|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1196A>C|||||1196|	GT:AD:DP:GQ:PL	0/1:11,13:24:99:347,0,309	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28523	.	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=1;MQRankSum=-2.690;QD=10.18;ReadPosRankSum=1.059;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.349T>C|p.Trp117Arg|349/1938|349/1938|117/645||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-560A>G|||||560|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2748T>C|||||2748|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1146A>G|||||1146|	GT:AD:DP:GQ:PL	0/1:11,10:21:99:242,0,274	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28556	.	T	C	593.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=1;QD=28.27;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.382T>C|p.Ser128Pro|382/1938|382/1938|128/645||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-593A>G|||||593|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2781T>C|||||2781|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1113A>G|||||1113|	GT:AD:DP:GQ:PL	1/1:0,21:21:45:622,45,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28570	.	A	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.115;HaplotypeScore=3.6120;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=-2.379;QD=9.10;ReadPosRankSum=-0.534;SOR=0.916;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.396A>G|p.Val132Val|396/1938|396/1938|132/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-607T>C|||||607|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2795A>G|||||2795|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1099T>C|||||1099|	GT:AD:DP:GQ:PL	0/1:10,8:18:99:192,0,296	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28603	.	C	T	671.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=33.59;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.429C>T|p.Asp143Asp|429/1938|429/1938|143/645||,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-640G>A|||||640|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2828C>T|||||2828|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1066G>A|||||1066|	GT:AD:DP:GQ:PL	1/1:0,20:21:51:700,51,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28637	.	A	T	770.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.000;QD=32.12;ReadPosRankSum=0.290;SOR=0.353;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.463A>T|p.Ile155Leu|463/1938|463/1938|155/645||,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-674T>A|||||674|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2862A>T|||||2862|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*1032T>A|||||1032|	GT:AD:DP:GQ:PL	1/1:1,23:25:57:799,57,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28715	.	C	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-0.231;QD=8.13;ReadPosRankSum=1.629;SOR=0.577;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.541C>G|p.Leu181Val|541/1938|541/1938|181/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-752G>C|||||752|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*2940C>G|||||2940|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*954G>C|||||954|	GT:AD:DP:GQ:PL	0/1:23,15:38:99:337,0,604	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28784	.	T	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.331;HaplotypeScore=5.6697;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=1.177;QD=4.72;ReadPosRankSum=0.285;SOR=0.980;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.610T>G|p.Phe204Val|610/1938|610/1938|204/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-821A>C|||||821|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3009T>G|||||3009|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*885A>C|||||885|	GT:AD:DP:GQ:PL	0/1:31,12:43:99:231,0,681	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28805	.	A	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=7.4629;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=1.566;QD=6.12;ReadPosRankSum=-1.462;SOR=1.414;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.631A>G|p.Ser211Gly|631/1938|631/1938|211/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-842T>C|||||842|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3030A>G|||||3030|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*864T>C|||||864|	GT:AD:DP:GQ:PL	0/1:27,12:39:99:267,0,661	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28812	.	C	CT	770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;DP=36;ExcessHet=3.0103;FS=3.419;MLEAC=1;MLEAF=0.500;MQ=55.49;MQ0=0;MQRankSum=-0.724;QD=23.36;RPA=3,4;RU=T;ReadPosRankSum=1.490;SOR=0.257;STR;ANN=CT|frameshift_variant|HIGH|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.641dupT|p.Leu214fs|642/1938|642/1938|214/645||INFO_REALIGN_3_PRIME,CT|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-850dupA|||||850|,CT|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3037_*3038insT|||||3038|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,CT|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*856dupA|||||856|;LOF=(EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|1|1.00)	GT:AD:DP:GQ:PL	0/1:10,23:34:99:808,0,295	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28834	.	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.47;MQ0=0;MQRankSum=-0.056;QD=16.19;ReadPosRankSum=0.689;SOR=0.569;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.660A>G|p.Arg220Arg|660/1938|660/1938|220/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-871T>C|||||871|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3059A>G|||||3059|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*835T>C|||||835|	GT:AD:DP:GQ:PL	0/1:12,24:36:99:611,0,218	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28841	.	G	C	955.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=28.96;SOR=1.022;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.667G>C|p.Glu223Gln|667/1938|667/1938|223/645||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-878C>G|||||878|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3066G>C|||||3066|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*828C>G|||||828|	GT:AD:DP:GQ:PL	1/1:0,33:33:72:984,72,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28876	.	A	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.705;HaplotypeScore=3.6981;MLEAC=1;MLEAF=0.500;MQ=51.02;MQ0=0;MQRankSum=-1.852;QD=18.07;ReadPosRankSum=-1.143;SOR=1.292;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/2|c.702A>G|p.Gln234Gln|702/1938|702/1938|234/645||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-913T>C|||||913|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3101A>G|||||3101|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*793T>C|||||793|	GT:AD:DP:GQ:PL	0/1:8,19:27:99:516,0,250	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28920	.	A	T	759.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=2;QD=30.39;SOR=1.426;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-957T>A|||||957|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3145A>T|||||3145|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*749T>A|||||749|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+33A>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:57:788,57,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28952	.	T	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.425;HaplotypeScore=2.7649;MLEAC=1;MLEAF=0.500;MQ=43.84;MQ0=4;MQRankSum=1.998;QD=9.69;ReadPosRankSum=0.207;SOR=0.895;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-989A>T|||||989|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3177T>A|||||3177|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*717A>T|||||717|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+65T>A||||||	GT:AD:DP:GQ:PL	0/1:13,10:23:99:251,0,272	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28974	.	C	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.415;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=46.95;MQ0=5;MQRankSum=-1.355;QD=9.87;ReadPosRankSum=-0.457;SOR=1.750;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1011G>T|||||1011|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3199C>A|||||3199|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*695G>T|||||695|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+87C>A||||||	GT:AD:DP:GQ:PL	0/1:14,11:25:99:275,0,219	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	28992	.	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.821;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=49.55;MQ0=5;MQRankSum=1.012;QD=8.25;ReadPosRankSum=-0.561;SOR=0.223;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1029G>A|||||1029|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3217C>T|||||3217|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*677G>A|||||677|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+105C>T||||||	GT:AD:DP:GQ:PL	0/1:12,15:27:99:251,0,249	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29031	.	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.61;MQ0=2;MQRankSum=-0.663;QD=15.49;ReadPosRankSum=0.039;SOR=0.368;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1068C>T|||||1068|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3256G>A|||||3256|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*638C>T|||||638|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+144G>A||||||	GT:AD:DP:GQ:PL	0/1:8,14:22:99:369,0,204	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29071	.	A	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=0.255;QD=8.89;ReadPosRankSum=0.199;SOR=0.845;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1108T>G|||||1108|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3296A>C|||||3296|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*598T>G|||||598|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+184A>C||||||	GT:AD:DP:GQ:PL	0/1:13,7:20:99:206,0,338	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29078	.	T	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=-0.905;QD=13.88;ReadPosRankSum=-0.790;SOR=0.836;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1115A>T|||||1115|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3303T>A|||||3303|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*591A>T|||||591|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+191T>A||||||	GT:AD:DP:GQ:PL	0/1:6,13:19:99:292,0,168	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29159	.	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;DP=15;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.05;MQ0=3;MQRankSum=1.201;QD=4.92;ReadPosRankSum=-0.864;SOR=0.620;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1196G>A|||||1196|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3384C>T|||||3384|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*510G>A|||||510|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+272C>T||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:99:102,0,178	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29198	.	T	C	259.8	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=4;QD=18.56;SOR=2.303;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1235A>G|||||1235|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3423T>C|||||3423|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*471A>G|||||471|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+311T>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:21:288,21,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29258	.	A	G	99.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=3;MQRankSum=1.150;QD=14.18;ReadPosRankSum=-0.319;SOR=2.788;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1295T>C|||||1295|,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3483A>G|||||3483|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*411T>C|||||411|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+371A>G||||||	GT:AD:DP:GQ:PL	1/1:2,5:7:9:127,9,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29356	.	C	A	62.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.69;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1393G>T|||||1393|,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3581C>A|||||3581|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*313G>T|||||313|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+469C>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:6:90,6,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29434	.	C	T	86.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=5;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.87;MQ0=0;MQRankSum=1.645;QD=17.37;ReadPosRankSum=0.524;SOR=2.833;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1471G>A|||||1471|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3659C>T|||||3659|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*235G>A|||||235|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+547C>T||||||	GT:AD:DP:GQ:PL	0/1:2,3:5:17:115,0,17	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29462	.	C	T	85.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=21.32;SOR=1.609;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1499G>A|||||1499|,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3687C>T|||||3687|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*207G>A|||||207|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+575C>T||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:113,9,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	29465	.	T	C	46.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.32;MQ0=0;MQRankSum=1.383;QD=11.70;ReadPosRankSum=-1.383;SOR=2.303;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_27730_27963|GENE_EXON_scaffold5872_cov61_27730_27963|transcript|Soaet10009158|protein_coding||c.-1502A>G|||||1502|,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_20988_25775|GENE_EXON_scaffold5872_cov61_20988_25775|transcript|Soaet10009157|protein_coding||c.*3690T>C|||||3690|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.*204A>G|||||204|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.713+578T>C||||||	GT:AD:DP:GQ:PL	0/1:2,2:4:20:75,0,20	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	34987	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1246C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.473-4972G>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	34987	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1246C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.473-4972G>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	34996	.	G	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1237G>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.473-4981C>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	34996	.	G	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1237G>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.473-4981C>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	35100	.	G	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.14;MQ0=0;MQRankSum=1.068;QD=1.59;ReadPosRankSum=-0.366;SOR=0.446;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1133G>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4976C>G||||||	GT:AD:DP:GQ:PL	0/1:5,2:7:39:39,0,39	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	35100	.	G	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.14;MQ0=0;MQRankSum=1.068;QD=1.59;ReadPosRankSum=-0.366;SOR=0.446;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1133G>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4976C>G||||||	GT:AD:DP:GQ:PL	0/1:5,2:7:39:39,0,39	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	35164	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1069T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4912A>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	35164	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1069T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4912A>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	35165	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1068T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4911A>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	35165	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1068T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4911A>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	35186	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=1;QD=7.83;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1047C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4890G>A||||||	GT:AD:DP:GQ:PL	1/1:1,1:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	35186	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=1;QD=7.83;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-1047C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4890G>A||||||	GT:AD:DP:GQ:PL	1/1:1,1:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	35861	.	T	C	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.64;MQ0=0;MQRankSum=-1.645;QD=5.16;ReadPosRankSum=0.000;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-372T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4215A>G||||||	GT:AD:DP:GQ:PL	0/1:3,2:5:54:54,0,75	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	35861	.	T	C	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.64;MQ0=0;MQRankSum=-1.645;QD=5.16;ReadPosRankSum=0.000;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-372T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4215A>G||||||	GT:AD:DP:GQ:PL	0/1:3,2:5:54:54,0,75	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	35886	.	C	T	199.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=28.55;SOR=2.584;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-347C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4190G>A||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:18:228,18,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	35886	.	C	T	199.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=28.55;SOR=2.584;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-347C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4190G>A||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:18:228,18,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	35910	.	T	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=12;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=36.28;MQ0=2;MQRankSum=-2.638;QD=14.48;ReadPosRankSum=-2.241;SOR=3.383;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-323T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4166A>G||||||	GT:AD:DP:GQ:PL	0/1:3,9:12:63:202,0,63	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	35910	.	T	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=12;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=36.28;MQ0=2;MQRankSum=-2.638;QD=14.48;ReadPosRankSum=-2.241;SOR=3.383;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-323T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4166A>G||||||	GT:AD:DP:GQ:PL	0/1:3,9:12:63:202,0,63	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36027	.	G	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=2;MQRankSum=-0.345;QD=17.56;ReadPosRankSum=-0.933;SOR=1.739;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-206G>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4049C>G||||||	GT:AD:DP:GQ:PL	0/1:7,16:23:99:432,0,157	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36027	.	G	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=2;MQRankSum=-0.345;QD=17.56;ReadPosRankSum=-0.933;SOR=1.739;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-206G>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4049C>G||||||	GT:AD:DP:GQ:PL	0/1:7,16:23:99:432,0,157	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36065	.	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.531;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-0.277;QD=7.47;ReadPosRankSum=0.184;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-168T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4011A>G||||||	GT:AD:DP:GQ:PL	0/1:19,10:29:99:245,0,588	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36065	.	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.531;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-0.277;QD=7.47;ReadPosRankSum=0.184;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-168T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4011A>G||||||	GT:AD:DP:GQ:PL	0/1:19,10:29:99:245,0,588	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36070	.	A	T	879.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=30.34;SOR=1.255;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-163A>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4006T>A||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:66:908,66,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36070	.	A	T	879.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=30.34;SOR=1.255;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|1/1|c.714-163A>T||||||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+4006T>A||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:66:908,66,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36543	.	A	G	46.74	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=2;QD=5.19;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1024A>G|p.Arg342Gly|1024/1938|1024/1938|342/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3533T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:6:74,6,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36543	.	A	G	46.74	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=2;QD=5.19;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1024A>G|p.Arg342Gly|1024/1938|1024/1938|342/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3533T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:6:74,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36544	.	G	A	38.74	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=2;QD=4.30;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1025G>A|p.Arg342Lys|1025/1938|1025/1938|342/645||,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3532C>T||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:6:66,6,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36544	.	G	A	38.74	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=2;QD=4.30;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1025G>A|p.Arg342Lys|1025/1938|1025/1938|342/645||,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3532C>T||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:6:66,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36563	.	A	T	39.74	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=1;QD=5.68;SOR=2.303;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1044A>T|p.Ser348Ser|1044/1938|1044/1938|348/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3513T>A||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:6:67,6,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36563	.	A	T	39.74	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=1;QD=5.68;SOR=2.303;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1044A>T|p.Ser348Ser|1044/1938|1044/1938|348/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3513T>A||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:6:67,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36575	.	A	G	39.74	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=1;QD=5.68;SOR=2.303;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1056A>G|p.Leu352Leu|1056/1938|1056/1938|352/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3501T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:6:67,6,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36575	.	A	G	39.74	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=1;QD=5.68;SOR=2.303;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1056A>G|p.Leu352Leu|1056/1938|1056/1938|352/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3501T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:6:67,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36590	.	C	T	10.9	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.11;MQ0=1;QD=2.72;SOR=2.833;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1071C>T|p.Asp357Asp|1071/1938|1071/1938|357/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3486G>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:3:37,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36590	.	C	T	10.9	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.11;MQ0=1;QD=2.72;SOR=2.833;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1071C>T|p.Asp357Asp|1071/1938|1071/1938|357/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3486G>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:3:37,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36972	.	C	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1453C>G|p.Gln485Glu|1453/1938|1453/1938|485/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3104G>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36972	.	C	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1453C>G|p.Gln485Glu|1453/1938|1453/1938|485/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3104G>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	36992	.	C	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1473C>A|p.Asp491Glu|1473/1938|1473/1938|491/645||,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3084G>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	36992	.	C	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1473C>A|p.Asp491Glu|1473/1938|1473/1938|491/645||,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3084G>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37005	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1486A>G|p.Thr496Ala|1486/1938|1486/1938|496/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3071T>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37005	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1486A>G|p.Thr496Ala|1486/1938|1486/1938|496/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3071T>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37009	.	G	T	13.72	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=13.72;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1490G>T|p.Gly497Val|1490/1938|1490/1938|497/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3067C>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37009	.	G	T	13.72	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=13.72;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1490G>T|p.Gly497Val|1490/1938|1490/1938|497/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3067C>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37054	.	G	C	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=9.30;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1535G>C|p.Arg512Thr|1535/1938|1535/1938|512/645||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3022C>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37054	.	G	C	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=9.30;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1535G>C|p.Arg512Thr|1535/1938|1535/1938|512/645||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3022C>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37059	.	A	T	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=7.83;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1540A>T|p.Thr514Ser|1540/1938|1540/1938|514/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3017T>A||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37059	.	A	T	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=7.83;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1540A>T|p.Thr514Ser|1540/1938|1540/1938|514/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3017T>A||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37062	.	G	C	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=7.83;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1543G>C|p.Asp515His|1543/1938|1543/1938|515/645||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3014C>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37062	.	G	C	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=7.83;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1543G>C|p.Asp515His|1543/1938|1543/1938|515/645||,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+3014C>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37130	.	G	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1611G>T|p.Gln537His|1611/1938|1611/1938|537/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2946C>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37130	.	G	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1611G>T|p.Gln537His|1611/1938|1611/1938|537/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2946C>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37134	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1615C>T|p.Arg539Cys|1615/1938|1615/1938|539/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2942G>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37134	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1615C>T|p.Arg539Cys|1615/1938|1615/1938|539/645||,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2942G>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37138	.	T	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1619T>A|p.Val540Asp|1619/1938|1619/1938|540/645||,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2938A>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37138	.	T	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1619T>A|p.Val540Asp|1619/1938|1619/1938|540/645||,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2938A>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	37155	.	C	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1636C>G|p.His546Asp|1636/1938|1636/1938|546/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2921G>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	28175	37457	0.45	+	.	ID=Soaet10009159
scaffold5872_cov61	37155	.	C	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding|2/2|c.1636C>G|p.His546Asp|1636/1938|1636/1938|546/645||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+2921G>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	38087	.	G	A	13.72	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=13.72;SOR=1.609;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*630G>A|||||630|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|2/2|c.472+1989C>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40250	.	A	T	122.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=2.287;QD=12.28;ReadPosRankSum=0.728;SOR=0.105;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2793A>T|||||2793|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-27T>A||||||	GT:AD:DP:GQ:PL	0/1:2,8:10:26:151,0,26	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40306	.	C	CCATCTGTCG	575.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=27.42;SOR=1.609;ANN=CCATCTGTCG|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2849_*2850insCATCTGTCG|||||2850|,CCATCTGTCG|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-84_325-83insCGACAGATG||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:21:613,21,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40307	.	T	C	180.9	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9571;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=18.09;SOR=1.085;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2850T>C|||||2850|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-84A>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:15:209,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40325	.	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.61;MQ0=0;MQRankSum=0.792;QD=15.96;RPA=6,7;RU=T;ReadPosRankSum=1.068;SOR=1.981;STR;ANN=CT|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2868_*2869insT|||||2869|,CT|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-103_325-102insA||||||	GT:AD:DP:GQ:PL	0/1:2,5:9:49:149,0,49	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40336	.	T	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=0;MQRankSum=0.431;QD=14.28;ReadPosRankSum=1.213;SOR=0.527;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2879T>C|||||2879|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-113A>G||||||	GT:AD:DP:GQ:PL	0/1:3,7:10:60:171,0,60	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40337	.	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=0;MQRankSum=0.431;QD=13.18;ReadPosRankSum=1.235;SOR=0.527;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2880G>A|||||2880|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-114C>T||||||	GT:AD:DP:GQ:PL	0/1:3,7:10:62:160,0,62	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40367	.	A	G	27.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=0;MQRankSum=-1.383;QD=4.63;ReadPosRankSum=-0.210;SOR=0.368;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2910A>G|||||2910|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-144T>C||||||	GT:AD:DP:GQ:PL	0/1:1,5:6:33:56,0,33	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40453	.	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.70;MQ0=0;MQRankSum=0.497;QD=3.53;ReadPosRankSum=0.000;SOR=1.179;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*2996C>T|||||2996|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-230G>A||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:60:60,0,165	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40457	.	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=0;MQRankSum=0.135;QD=5.10;ReadPosRankSum=-0.135;SOR=0.818;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3000A>C|||||3000|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-234T>G||||||	GT:AD:DP:GQ:PL	0/1:5,3:8:69:69,0,149	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40459	.	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.14;MQ0=0;MQRankSum=0.000;QD=13.20;ReadPosRankSum=0.000;SOR=0.368;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3002C>T|||||3002|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-236G>A||||||	GT:AD:DP:GQ:PL	0/1:3,6:9:69:147,0,69	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40478	.	A	G	274.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=49.09;MQ0=0;MQRankSum=1.493;QD=21.14;ReadPosRankSum=1.087;SOR=0.859;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3021A>G|||||3021|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-255T>C||||||	GT:AD:DP:GQ:PL	0/1:2,11:13:18:303,0,18	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40487	.	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.88;MQ0=0;MQRankSum=-0.609;QD=17.67;ReadPosRankSum=-0.169;SOR=0.627;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3030T>C|||||3030|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-264A>G||||||	GT:AD:DP:GQ:PL	0/1:3,10:13:90:258,0,90	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40501	.	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.88;MQ0=0;MQRankSum=0.784;QD=5.29;ReadPosRankSum=-0.338;SOR=0.765;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3044G>A|||||3044|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-278C>T||||||	GT:AD:DP:GQ:PL	0/1:10,3:13:97:97,0,258	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40504	.	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.34;MQ0=0;MQRankSum=0.800;QD=4.91;ReadPosRankSum=-0.078;SOR=0.976;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3047G>A|||||3047|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-281C>T||||||	GT:AD:DP:GQ:PL	0/1:11,3:14:97:97,0,261	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40518	.	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.54;MQ0=0;MQRankSum=0.644;QD=4.70;ReadPosRankSum=-0.545;SOR=0.631;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3061T>C|||||3061|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-295A>G||||||	GT:AD:DP:GQ:PL	0/1:11,3:14:94:94,0,300	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40579	.	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.51;MQ0=0;MQRankSum=-1.634;QD=15.30;ReadPosRankSum=0.050;SOR=0.818;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3122G>A|||||3122|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-356C>T||||||	GT:AD:DP:GQ:PL	0/1:4,15:19:59:319,0,59	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40601	.	C	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9981;MLEAC=1;MLEAF=0.500;MQ=53.34;MQ0=0;MQRankSum=-1.115;QD=16.85;ReadPosRankSum=-0.795;SOR=0.582;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3144C>T|||||3144|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-378G>A||||||	GT:AD:DP:GQ:PL	0/1:3,12:16:60:281,0,60	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40604	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=52.32;MQ0=0;MQRankSum=1.436;QD=2.27;ReadPosRankSum=0.857;SOR=0.631;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3147G>A|||||3147|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-381C>T||||||	GT:AD:DP:GQ:PL	0/1:11,3:14:60:60,0,276	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40615	.	G	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-1.297;QD=16.21;ReadPosRankSum=-0.932;SOR=0.627;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3158G>T|||||3158|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-392C>A||||||	GT:AD:DP:GQ:PL	0/1:3,10:13:63:239,0,63	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40620	.	T	C	309.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.83;SOR=1.179;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3163T>C|||||3163|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-397A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:24:338,24,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40654	.	T	C	210.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=30.12;SOR=2.584;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3197T>C|||||3197|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-431A>G||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:18:239,18,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	40665	.	T	C	211.84	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=30.68;SOR=3.912;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_28175_28887|GENE_EXON_scaffold5872_cov61_28175_28887|transcript|Soaet10009159|protein_coding||c.*3208T>C|||||3208|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-442A>G||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43002	.	G	A	23.76	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=0;QD=11.88;SOR=2.303;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2779C>T||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43031	.	T	C	23.76	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=0;QD=11.88;SOR=2.303;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2808A>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43066	.	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=8;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=32.98;MQ0=0;MQRankSum=0.619;QD=4.47;ReadPosRankSum=-1.068;SOR=2.303;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2843C>T||||||	GT:AD:DP:GQ:PL	0/1:6,2:8:64:64,0,98	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43079	.	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=7;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=34.52;MQ0=0;MQRankSum=0.366;QD=5.11;ReadPosRankSum=-0.876;SOR=2.258;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2856C>T||||||	GT:AD:DP:GQ:PL	0/1:5,2:7:64:64,0,98	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43096	.	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=8;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=34.84;MQ0=0;MQRankSum=0.414;QD=8.97;ReadPosRankSum=-0.854;SOR=2.807;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2873T>C||||||	GT:AD:DP:GQ:PL	0/1:5,3:8:74:100,0,74	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43100	.	A	G	243.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=27.09;SOR=1.402;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2877T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:21:272,21,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43115	.	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DP=9;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=1.9092;MLEAC=1;MLEAF=0.500;MQ=35.45;MQ0=0;MQRankSum=-0.475;QD=12.64;ReadPosRankSum=-0.589;SOR=1.981;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2892T>C||||||	GT:AD:DP:GQ:PL	0/1:4,5:9:71:142,0,71	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43139	.	A	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=37.09;MQ0=0;MQRankSum=-0.010;QD=12.97;ReadPosRankSum=-0.712;SOR=1.872;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2916T>A||||||	GT:AD:DP:GQ:PL	0/1:4,5:9:54:145,0,54	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43174	.	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;DP=8;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.76;MQ0=0;MQRankSum=-0.732;QD=14.60;ReadPosRankSum=1.465;SOR=1.901;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2951C>T||||||	GT:AD:DP:GQ:PL	0/1:3,5:8:54:145,0,54	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43207	.	A	G	161.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=32.38;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2984T>C||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43214	.	C	T	156.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=31.38;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-2991G>A||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:15:185,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43229	.	G	A	161.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=32.38;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3006C>T||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43231	.	G	A	161.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=32.38;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3008C>T||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43240	.	G	A	156.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=31.38;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3017C>T||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:15:185,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43247	.	A	G	120.03	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.61;MQ0=0;QD=24.01;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3024T>C||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:12:148,12,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43253	.	G	A	80.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;QD=20.07;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3030C>T||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:108,9,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43256	.	C	T	107.03	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=21.41;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3033G>A||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:12:135,12,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43260	.	T	C	107.03	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=21.41;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3037A>G||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:12:135,12,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43287	.	T	C	110.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=18.34;SOR=1.329;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3064A>G||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:12:138,12,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43324	.	C	G	166.9	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=20.86;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3101G>C||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:15:195,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43402	.	C	T	125.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=20.84;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3179G>A||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:12:153,12,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	43435	.	T	C	84.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=21.07;SOR=3.258;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.325-3212A>G||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:112,9,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	45067	.	T	C	13.72	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=13.72;SOR=1.609;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*4170A>G|||||4170|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+1855A>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46504	.	A	T	13.72	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.72;SOR=1.609;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2733T>A|||||2733|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+418T>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46506	.	A	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2731T>A|||||2731|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+416T>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46511	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2726G>A|||||2726|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+411G>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46530	.	A	G	54.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SOR=2.303;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2707T>C|||||2707|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+392T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46552	.	A	G	54.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SOR=2.303;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2685T>C|||||2685|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+370T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46628	.	T	C	181.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SOR=1.609;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2609A>G|||||2609|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+294A>G||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:210,15,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46687	.	T	TTATCAACAA	1115.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.74;SOR=0.693;ANN=TTATCAACAA|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2549_*2550insTTGTTGATA|||||2549|,TTATCAACAA|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+234_324+235insTTGTTGATA||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:30:1153,30,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46706	.	T	A	306.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.68;SOR=0.693;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2531A>T|||||2531|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+216A>T||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:24:335,24,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46753	.	T	G	433.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.92;SOR=0.818;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2484A>C|||||2484|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+169A>C||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:462,33,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46760	.	C	T	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.84;ReadPosRankSum=0.390;SOR=0.591;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2477G>A|||||2477|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+162G>A||||||	GT:AD:DP:GQ:PL	0/1:3,11:14:52:334,0,52	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46789	.	T	C	427.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SOR=0.804;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2448A>G|||||2448|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+133A>G||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:33:456,33,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46800	.	T	C	406.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SOR=0.693;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2437A>G|||||2437|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+122A>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:30:435,30,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46805	.	G	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.80;ReadPosRankSum=-0.624;SOR=0.654;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2432C>T|||||2432|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+117C>T||||||	GT:AD:DP:GQ:PL	0/1:5,11:16:99:265,0,102	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46822	.	C	T	314.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.23;SOR=0.693;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2415G>A|||||2415|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+100G>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:343,24,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46835	.	T	C	301.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SOR=0.693;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2402A>G|||||2402|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+87A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:330,24,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46836	.	T	C	319.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SOR=0.693;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2401A>G|||||2401|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+86A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:348,24,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46854	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.694;SOR=0.223;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2383G>A|||||2383|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+68G>A||||||	GT:AD:DP:GQ:PL	0/1:7,6:13:99:110,0,184	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46864	.	C	T	328.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.40;SOR=1.445;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2373G>A|||||2373|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+58G>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:27:357,27,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46867	.	T	C	343.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.65;SOR=1.445;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2370A>G|||||2370|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+55A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:27:372,27,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46868	.	A	C	353.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.48;SOR=1.445;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2369T>G|||||2369|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+54T>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:27:382,27,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	46914	.	G	A	359.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.98;SOR=1.022;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/2|c.324+8C>T||||||,A|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2323C>T|||||2323|	GT:AD:DP:GQ:PL	1/1:0,12:12:27:388,27,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	47035	.	C	T	426.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.83;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding|1/3|c.211G>A|p.Gly71Ser|211/819|211/819|71/272||,T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding||c.*2202G>A|||||2202|	GT:AD:DP:GQ:PL	1/1:0,13:13:33:455,33,0	scaffold5872_cov61	GLEAN	mRNA	29669	47245	0.96	-	.	ID=Soaet10009160
scaffold5872_cov61	49249	.	AAT	A	1280.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.88;RPA=2,1;RU=AT;SOR=1.022;STR;ANN=A|frameshift_variant|HIGH|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|7/7|c.1843_1844delAT|p.Ile615fs|1844/1857|1843/1857|615/618||,A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2006_-2005delAT|||||2005|	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1318,78,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49442	.	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8963;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=1.104;QD=11.79;ReadPosRankSum=-1.071;SOR=0.836;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|7/7|c.1652G>A|p.Arg551Lys|1652/1857|1652/1857|551/618||,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2197G>A|||||2197|	GT:AD:DP:GQ:PL	0/1:15,14:29:99:370,0,375	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49549	.	AAAC	A	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=23;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=2.097;QD=23.99;RPA=3,2;RU=AAC;ReadPosRankSum=1.262;SOR=0.921;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2307_-2305delGTT|||||2305|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-39_1581-37delGTT||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:589,0,127	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49555	.	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=0;MQRankSum=-2.053;QD=13.32;ReadPosRankSum=-0.493;SOR=0.755;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2310G>A|||||2310|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-42G>A||||||	GT:AD:DP:GQ:PL	0/1:13,11:24:99:348,0,370	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49563	.	G	C	772.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=33.60;SOR=0.963;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2318C>G|||||2318|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-50C>G||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:57:801,57,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49564	.	C	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-2.014;QD=10.95;ReadPosRankSum=0.373;SOR=0.917;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2319G>A|||||2319|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-51G>A||||||	GT:AD:DP:GQ:PL	0/1:13,10:23:99:280,0,334	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49574	.	T	C,G	712.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.052;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.41;MQ0=0;MQRankSum=-0.240;QD=27.41;ReadPosRankSum=-1.201;SOR=0.255;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2329A>G|||||2329|,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2329A>C|||||2329|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-61A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-61A>C||||||	GT:AD:DP:GQ:PL	1/2:1,15,10:26:99:741,312,279,429,0,405	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49581	.	T	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=0;MQRankSum=-1.989;QD=10.55;ReadPosRankSum=1.810;SOR=0.601;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2336A>C|||||2336|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-68A>C||||||	GT:AD:DP:GQ:PL	0/1:14,11:25:99:292,0,402	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49583	.	T	C,G	711.77	.	AC=1,1;AF=0.500,0.500;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.31;MQ0=0;QD=28.47;SOR=0.941;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2338A>G|||||2338|,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2338A>C|||||2338|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-70A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-70A>C||||||	GT:AD:DP:GQ:PL	1/2:0,14,11:25:99:740,301,268,439,0,415	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49594	.	GA	G	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-2.126;QD=13.99;ReadPosRankSum=2.690;SOR=0.711;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2350delT|||||2350|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-82delT||||||	GT:AD:DP:GQ:PL	0/1:16,11:27:99:415,0,641	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49618	.	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-1.805;QD=8.45;ReadPosRankSum=1.522;SOR=0.917;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2373A>G|||||2373|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1581-105A>G||||||	GT:AD:DP:GQ:PL	0/1:15,9:24:99:231,0,448	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49626	.	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-1.805;QD=8.16;ReadPosRankSum=0.626;SOR=0.917;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2381G>A|||||2381|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1580+103G>A||||||	GT:AD:DP:GQ:PL	0/1:15,9:24:99:224,0,437	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49636	.	A	G	655.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=32.79;SOR=1.127;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2391T>C|||||2391|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1580+93T>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:51:684,51,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49637	.	G	A	631.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=31.59;SOR=1.127;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2392C>T|||||2392|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1580+92C>T||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:48:660,48,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49640	.	GGTT	G	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-1.778;QD=17.75;RPA=2,1;RU=GTT;ReadPosRankSum=-0.797;SOR=1.002;STR;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2398_-2396delAAC|||||2396|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1580+86_1580+88delAAC||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:410,0,662	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49654	.	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=1.632;QD=14.16;ReadPosRankSum=2.435;SOR=0.631;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2409C>T|||||2409|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1580+75C>T||||||	GT:AD:DP:GQ:PL	0/1:11,13:24:99:368,0,241	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49683	.	A	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.71;ReadPosRankSum=0.888;SOR=0.567;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2438T>C|||||2438|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/6|c.1580+46T>C||||||	GT:AD:DP:GQ:PL	0/1:10,18:28:99:496,0,274	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49832	.	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.787;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/7|c.1477G>A|p.Gly493Arg|1477/1857|1477/1857|493/618||,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2587G>A|||||2587|	GT:AD:DP:GQ:PL	0/1:8,11:19:99:293,0,220	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49833	.	A	G	561.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.57;SOR=1.609;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|6/7|c.1476T>C|p.Tyr492Tyr|1476/1857|1476/1857|492/618||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2588T>C|||||2588|	GT:AD:DP:GQ:PL	1/1:0,19:19:42:590,42,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49879	.	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.74;ReadPosRankSum=-1.364;SOR=0.105;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1433-3T>C||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2634T>C|||||2634|	GT:AD:DP:GQ:PL	0/1:6,10:16:99:280,0,161	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49900	.	G	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.81;ReadPosRankSum=-0.151;SOR=0.399;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2655C>A|||||2655|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1433-24C>A||||||	GT:AD:DP:GQ:PL	0/1:6,11:17:99:297,0,168	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49965	.	A	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.69;ReadPosRankSum=0.046;SOR=0.634;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2720T>C|||||2720|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1433-89T>C||||||	GT:AD:DP:GQ:PL	0/1:3,20:23:42:504,0,42	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49966	.	CT	C	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;DP=23;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=34.86;ReadPosRankSum=0.137;SOR=0.634;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2722delA|||||2722|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1433-91delA||||||	GT:AD:DP:GQ:PL	0/1:3,20:23:67:839,0,67	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49975	.	C	A	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.19;ReadPosRankSum=1.151;SOR=0.784;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2730G>T|||||2730|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1433-99G>T||||||	GT:AD:DP:GQ:PL	0/1:4,21:25:75:483,0,75	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	49984	.	A	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.95;ReadPosRankSum=1.522;SOR=0.784;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2739T>C|||||2739|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1432+98T>C||||||	GT:AD:DP:GQ:PL	0/1:4,21:25:84:477,0,84	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50035	.	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.236;SOR=0.599;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2790A>G|||||2790|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1432+47A>G||||||	GT:AD:DP:GQ:PL	0/1:9,18:27:99:431,0,208	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50044	.	A	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.397;SOR=0.636;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2799T>G|||||2799|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/6|c.1432+38T>G||||||	GT:AD:DP:GQ:PL	0/1:9,16:25:99:364,0,247	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50149	.	C	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.111;SOR=0.255;ANN=T|synonymous_variant|LOW|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|5/7|c.1365G>A|p.Ser455Ser|1365/1857|1365/1857|455/618||,T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-2904G>A|||||2904|	GT:AD:DP:GQ:PL	0/1:18,8:26:99:199,0,498	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50560	.	A	G	648.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.056;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.44;ReadPosRankSum=-1.478;SOR=0.507;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3315T>C|||||3315|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1119-92T>C||||||	GT:AD:DP:GQ:PL	1/1:1,19:20:48:677,48,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50585	.	C	T	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.976;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.42;ReadPosRankSum=0.432;SOR=1.721;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3340G>A|||||3340|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1118+105G>A||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:314,0,307	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50603	.	T	C	738.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.78;SOR=1.270;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3358A>G|||||3358|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1118+87A>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:54:767,54,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50604	.	G	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.289;SOR=1.038;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3359C>G|||||3359|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1118+86C>G||||||	GT:AD:DP:GQ:PL	0/1:12,12:24:99:331,0,325	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50611	.	T	G	742.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.95;SOR=1.051;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3366A>C|||||3366|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1118+79A>C||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:54:771,54,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50643	.	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.603;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-0.165;SOR=1.085;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3398G>A|||||3398|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1118+47G>A||||||	GT:AD:DP:GQ:PL	0/1:12,10:22:99:292,0,321	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50654	.	AC	A	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;DP=25;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.87;RPA=4,3;RU=C;ReadPosRankSum=-0.219;SOR=0.676;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3410delG|||||3410|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1118+35delG||||||	GT:AD:DP:GQ:PL	0/1:14,11:25:99:359,0,477	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50678	.	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.339;SOR=0.859;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3433G>A|||||3433|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/6|c.1118+12G>A||||||	GT:AD:DP:GQ:PL	0/1:12,11:23:99:284,0,278	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	50714	.	A	G	826.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;SOR=1.302;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|3/7|c.1094T>C|p.Phe365Ser|1094/1857|1094/1857|365/618||,G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-3469T>C|||||3469|	GT:AD:DP:GQ:PL	1/1:0,27:27:63:855,63,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51361	.	T	C	964.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.12;SOR=1.044;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|2/7|c.530A>G|p.Asn177Ser|530/1857|530/1857|177/618||,C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4116A>G|||||4116|	GT:AD:DP:GQ:PL	1/1:0,31:31:72:993,72,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51528	.	G	T	421.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.34;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4283C>A|||||4283|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-126C>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:33:450,33,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51611	.	C	A	575.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.79;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4366G>T|||||4366|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-209G>T||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:42:604,42,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51676	.	C	T	491.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.32;SOR=1.179;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4431G>A|||||4431|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-274G>A||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:36:520,36,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51684	.	G	T	485.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.99;SOR=1.179;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4439C>A|||||4439|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-282C>A||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:36:514,36,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51692	.	G	T	516.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.20;SOR=1.292;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4447C>A|||||4447|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-290C>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:39:545,39,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51708	.	A	G	298.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.28;SOR=1.863;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4463T>C|||||4463|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-306T>C||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:24:327,24,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51710	.	ATACAC	A	499.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.40;SOR=1.863;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4470_-4466delGTGTA|||||4466|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-313_489-309delGTGTA||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:24:537,24,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51716	.	T	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.78;ReadPosRankSum=2.515;SOR=1.919;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4471A>C|||||4471|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-314A>C||||||	GT:AD:DP:GQ:PL	0/1:5,5:10:99:176,0,140	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51729	.	G	A	373.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.98;SOR=0.859;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4484C>T|||||4484|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-327C>T||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:30:402,30,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51731	.	G	A	384.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.98;SOR=0.859;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4486C>T|||||4486|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-329C>T||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:30:413,30,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51736	.	G	T	341.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.18;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4491C>A|||||4491|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-334C>A||||||	GT:AD:DP:GQ:PL	1/1:0,10:11:27:370,27,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51738	.	G	T	347.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.62;SOR=0.859;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4493C>A|||||4493|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-336C>A||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:27:376,27,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51742	.	A	G	354.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.25;SOR=0.859;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4497T>C|||||4497|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-340T>C||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:27:383,27,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51747	.	T	C	389.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.71;SOR=0.859;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4502A>G|||||4502|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-345A>G||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:30:418,30,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51767	.	G	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.52;ReadPosRankSum=-0.952;SOR=0.662;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4522C>T|||||4522|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-365C>T||||||	GT:AD:DP:GQ:PL	0/1:5,12:17:93:343,0,93	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51790	.	A	G	462.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.914;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.22;ReadPosRankSum=1.537;SOR=0.595;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4545T>C|||||4545|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-388T>C||||||	GT:AD:DP:GQ:PL	1/1:1,16:17:36:491,36,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51807	.	TG	T	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;DP=17;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.28;ReadPosRankSum=-0.854;SOR=0.662;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4563delC|||||4563|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-406delC||||||	GT:AD:DP:GQ:PL	0/1:5,12:17:99:484,0,176	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51854	.	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-2.062;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4609C>T|||||4609|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-452C>T||||||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:173,0,176	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51876	.	A	C	317.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SOR=1.329;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4631T>G|||||4631|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-474T>G||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:24:346,24,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51878	.	T	C	356.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.73;SOR=1.981;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4633A>G|||||4633|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-476A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:27:385,27,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51880	.	C	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.000;SOR=0.941;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4635G>C|||||4635|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-478G>C||||||	GT:AD:DP:GQ:PL	0/1:7,5:12:99:137,0,150	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51921	.	A	T	202.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=3.622;QD=15.60;ReadPosRankSum=2.289;SOR=1.802;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4676T>A|||||4676|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-519T>A||||||	GT:AD:DP:GQ:PL	0/1:2,11:13:24:231,0,24	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51924	.	G	T	274.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=3.622;QD=21.14;ReadPosRankSum=1.883;SOR=1.802;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4679C>A|||||4679|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-522C>A||||||	GT:AD:DP:GQ:PL	0/1:2,11:13:18:303,0,18	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51925	.	A	G	274.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=3.622;QD=21.14;ReadPosRankSum=1.883;SOR=1.802;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4680T>C|||||4680|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-523T>C||||||	GT:AD:DP:GQ:PL	0/1:2,11:13:18:303,0,18	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	51948	.	A	T	333.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.81;ReadPosRankSum=-0.872;SOR=1.033;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4703T>A|||||4703|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-546T>A||||||	GT:AD:DP:GQ:PL	1/1:1,11:12:27:362,27,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52000	.	T	C	187.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SOR=1.609;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4755A>G|||||4755|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-598A>G||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:216,15,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52003	.	AT	A	259.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;RPA=2,1;RU=T;SOR=1.609;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4759delA|||||4759|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-602delA||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52010	.	A	G	185.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SOR=1.609;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4765T>C|||||4765|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-608T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:214,15,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52021	.	T	G	184.9	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SOR=1.179;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4776A>C|||||4776|,G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-619A>C||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:15:213,15,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52068	.	TA	T	344.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.70;RPA=2,1;RU=A;SOR=1.402;STR;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4824delT|||||4824|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-667delT||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:27:382,27,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52073	.	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.549;SOR=0.892;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4828C>T|||||4828|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-671C>T||||||	GT:AD:DP:GQ:PL	0/1:7,3:10:69:69,0,158	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52083	.	A	AT	507.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.57;RPA=1,2;RU=T;SOR=1.179;STR;ANN=AT|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4839_-4838insA|||||4839|,AT|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.489-682_489-681insA||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:39:545,39,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52129	.	C	A	315.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SOR=1.022;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4884G>T|||||4884|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+658G>T||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:344,24,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52158	.	A	T	308.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SOR=1.022;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4913T>A|||||4913|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+629T>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:337,24,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52184	.	AC	A	429.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.61;RPA=2,1;RU=C;SOR=1.270;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4940delG|||||4940|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+602delG||||||	GT:AD:DP:GQ:PL	1/1:0,11:12:33:467,33,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52198	.	C	T	232.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SOR=1.402;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4953G>A|||||4953|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+589G>A||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:261,18,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52218	.	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.97;ReadPosRankSum=0.712;SOR=1.179;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4973A>G|||||4973|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+569A>G||||||	GT:AD:DP:GQ:PL	0/1:5,4:9:99:109,0,114	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52220	.	ATATATAATAAT	A	659.87	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.21;SOR=1.981;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_29669_30015|GENE_EXON_scaffold5872_cov61_29669_30015|transcript|Soaet10009160|protein_coding||c.-4986_-4976delATTATTATATA|||||4976|,A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+556_488+566delATTATTATATA||||||	GT:AD:DP:GQ:PL	1/1:0,5:9:15:697,15,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52274	.	C	A	57.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+513G>T||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:85,6,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52276	.	G	A	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+511C>T||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52308	.	T	C	41.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.87;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+479A>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52310	.	T	G	41.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.87;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+477A>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52311	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=15.65;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+476G>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52314	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=7.83;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+473T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52331	.	A	G	40.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.37;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+456T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52340	.	G	A	50.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=25.37;SOR=2.303;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+447C>T||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52410	.	C	A	219.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.41;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+377G>T||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:18:248,18,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52438	.	T	A	266.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.404;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.25;ReadPosRankSum=1.743;SOR=1.447;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+349A>T||||||	GT:AD:DP:GQ:PL	1/1:1,10:11:21:295,21,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52440	.	T	C	276.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.843;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.16;ReadPosRankSum=1.743;SOR=1.447;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+347A>G||||||	GT:AD:DP:GQ:PL	1/1:1,10:11:24:305,24,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52471	.	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-1.531;SOR=1.034;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+316G>A||||||	GT:AD:DP:GQ:PL	0/1:5,8:13:99:186,0,108	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52552	.	C	T	441.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.45;SOR=1.112;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+235G>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:470,33,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52571	.	A	G	435.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.05;SOR=0.818;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+216T>C||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:464,33,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52580	.	CA	C	514.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.12;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+206delT||||||	GT:AD:DP:GQ:PL	1/1:0,14:16:42:552,42,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52582	.	T	G	401.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+205A>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:430,30,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52590	.	ACGAT	A	943.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.53;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+193_488+196delATCG||||||	GT:AD:DP:GQ:PL	1/1:0,13:14:39:981,39,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52737	.	CA	C	311.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.086;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=2.746;QD=20.78;RPA=11,10;RU=A;ReadPosRankSum=0.679;SOR=1.179;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+49delT||||||	GT:AD:DP:GQ:PL	1/1:2,13:16:34:349,34,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52747	.	A	AC	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.96;MQ0=0;MQRankSum=0.623;QD=3.58;ReadPosRankSum=0.964;SOR=0.941;ANN=AC|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+39_488+40insG||||||	GT:AD:DP:GQ:PL	0/1:8,7:17:80:91,0,80	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52749	.	C	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8284;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=4;MQRankSum=-0.684;QD=12.81;ReadPosRankSum=-1.451;SOR=0.694;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/6|c.488+38G>T||||||	GT:AD:DP:GQ:PL	0/1:11,11:22:84:310,0,84	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	52834	.	T	A	502.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.57;SOR=1.061;ANN=A|synonymous_variant|LOW|EXON_scaffold5872_cov61_49237_49513|GENE_EXON_scaffold5872_cov61_49237_49513|transcript|Soaet10009161|protein_coding|1/7|c.441A>T|p.Ile147Ile|441/1857|441/1857|147/618||	GT:AD:DP:GQ:PL	1/1:0,17:17:39:531,39,0	scaffold5872_cov61	GLEAN	mRNA	49237	53274	0.42	-	.	ID=Soaet10009161
scaffold5872_cov61	63779	.	G	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=8;MQRankSum=-1.282;QD=1.20;ReadPosRankSum=0.431;SOR=2.225;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_63368_63472|GENE_EXON_scaffold5872_cov61_63368_63472|transcript|Soaet10009164|protein_coding|4/5|c.440-138C>T||||||	GT:AD:DP:GQ:PL	0/1:10,4:14:45:45,0,137	scaffold5872_cov61	GLEAN	mRNA	63368	65045	1.00	-	.	ID=Soaet10009164
scaffold5872_cov61	64749	.	TAG	T	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DP=26;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=53.29;MQ0=0;MQRankSum=-4.395;QD=16.03;RPA=2,1;RU=AG;ReadPosRankSum=-1.144;SOR=1.609;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_63368_63472|GENE_EXON_scaffold5872_cov61_63368_63472|transcript|Soaet10009164|protein_coding|1/5|c.64-62_64-61delCT||||||	GT:AD:DP:GQ:PL	0/1:14,10:26:99:422,0,620	scaffold5872_cov61	GLEAN	mRNA	63368	65045	1.00	-	.	ID=Soaet10009164
scaffold5872_cov61	81767	.	A	C	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.41;ReadPosRankSum=0.648;SOR=0.839;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_80378_80419|GENE_EXON_scaffold5872_cov61_80378_80419|transcript|Soaet10009165|protein_coding|13/18|c.1096-204T>G||||||	GT:AD:DP:GQ:PL	0/1:9,17:26:99:559,0,234	scaffold5872_cov61	GLEAN	mRNA	80378	90892	0.34	-	.	ID=Soaet10009165
scaffold5872_cov61	105420	.	T	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8248;MLEAC=1;MLEAF=0.500;MQ=45.99;MQ0=2;MQRankSum=-3.481;QD=2.61;ReadPosRankSum=-1.952;SOR=1.112;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_93065_93145|GENE_EXON_scaffold5872_cov61_93065_93145|transcript|Soaet10009166|protein_coding|3/17|c.358+2429A>T||||||	GT:AD:DP:GQ:PL	0/1:9,7:16:70:70,0,234	scaffold5872_cov61	GLEAN	mRNA	93065	108480	0.39	-	.	ID=Soaet10009166
scaffold5872_cov61	105461	.	T	G	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.41;MQ0=2;MQRankSum=-3.578;QD=1.12;ReadPosRankSum=-0.507;SOR=0.399;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_93065_93145|GENE_EXON_scaffold5872_cov61_93065_93145|transcript|Soaet10009166|protein_coding|3/17|c.358+2388A>C||||||	GT:AD:DP:GQ:PL	0/1:15,8:23:54:54,0,346	scaffold5872_cov61	GLEAN	mRNA	93065	108480	0.39	-	.	ID=Soaet10009166
scaffold5872_cov61	105475	.	T	C	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=2;MQRankSum=-3.517;QD=1.03;ReadPosRankSum=1.088;SOR=0.593;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_93065_93145|GENE_EXON_scaffold5872_cov61_93065_93145|transcript|Soaet10009166|protein_coding|3/17|c.358+2374A>G||||||	GT:AD:DP:GQ:PL	0/1:17,8:25:54:54,0,362	scaffold5872_cov61	GLEAN	mRNA	93065	108480	0.39	-	.	ID=Soaet10009166
scaffold5872_cov61	105548	.	C	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=51.27;MQ0=1;MQRankSum=-3.769;QD=3.17;ReadPosRankSum=0.299;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_93065_93145|GENE_EXON_scaffold5872_cov61_93065_93145|transcript|Soaet10009166|protein_coding|3/17|c.358+2301G>T||||||	GT:AD:DP:GQ:PL	0/1:14,8:22:98:98,0,418	scaffold5872_cov61	GLEAN	mRNA	93065	108480	0.39	-	.	ID=Soaet10009166
scaffold5872_cov61	105575	.	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=-4.127;QD=2.46;ReadPosRankSum=-1.066;SOR=0.730;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_93065_93145|GENE_EXON_scaffold5872_cov61_93065_93145|transcript|Soaet10009166|protein_coding|3/17|c.358+2274T>C||||||	GT:AD:DP:GQ:PL	0/1:14,5:19:75:75,0,374	scaffold5872_cov61	GLEAN	mRNA	93065	108480	0.39	-	.	ID=Soaet10009166
scaffold5872_cov61	105893	.	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.68;ReadPosRankSum=-1.068;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_93065_93145|GENE_EXON_scaffold5872_cov61_93065_93145|transcript|Soaet10009166|protein_coding|3/17|c.358+1956C>T||||||	GT:AD:DP:GQ:PL	0/1:3,4:7:75:75,0,75	scaffold5872_cov61	GLEAN	mRNA	93065	108480	0.39	-	.	ID=Soaet10009166
scaffold5872_cov61	117986	.	T	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-1.910;SOR=0.732;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_121090_121248|GENE_EXON_scaffold5872_cov61_121090_121248|transcript|Soaet10009169|protein_coding||c.-3104T>C|||||3104|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_116988_117460|GENE_EXON_scaffold5872_cov61_116988_117460|transcript|Soaet10009168|protein_coding|1/2|c.473+526T>C||||||	GT:AD:DP:GQ:PL	0/1:20,8:28:99:224,0,526	scaffold5872_cov61	GLEAN	mRNA	116988	120208	0.44	+	.	ID=Soaet10009168
scaffold5872_cov61	120204	.	C	CATT	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=23;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.35;ReadPosRankSum=1.675;SOR=0.307;ANN=CATT|disruptive_inframe_insertion&splice_region_variant|MODERATE|EXON_scaffold5872_cov61_116988_117460|GENE_EXON_scaffold5872_cov61_116988_117460|transcript|Soaet10009168|protein_coding|3/3|c.1633_1634insTAT|p.Thr544_Ter545insLeu|1634/1635|1634/1635|545/544||INFO_REALIGN_3_PRIME,CATT|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_121090_121248|GENE_EXON_scaffold5872_cov61_121090_121248|transcript|Soaet10009169|protein_coding||c.-886_-885insATT|||||885|	GT:AD:DP:GQ:PL	0/1:14,8:23:99:419,0,764	scaffold5872_cov61	GLEAN	mRNA	116988	120208	0.44	+	.	ID=Soaet10009168
scaffold5872_cov61	135987	.	G	GT	82.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=0;MQRankSum=2.100;QD=10.34;RPA=13,14;RU=T;ReadPosRankSum=2.100;SOR=1.329;STR;ANN=GT|intron_variant|MODIFIER|EXON_scaffold5872_cov61_135649_135860|GENE_EXON_scaffold5872_cov61_135649_135860|transcript|Soaet10009170|protein_coding|1/15|c.212+127_212+128insT||||||	GT:AD:DP:GQ:PL	0/1:2,6:9:27:120,0,27	scaffold5872_cov61	GLEAN	mRNA	135649	141608	0.68	+	.	ID=Soaet10009170
scaffold5872_cov61	137384	.	T	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.276;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_135649_135860|GENE_EXON_scaffold5872_cov61_135649_135860|transcript|Soaet10009170|protein_coding|5/15|c.736+185T>A||||||	GT:AD:DP:GQ:PL	0/1:14,14:28:99:324,0,297	scaffold5872_cov61	GLEAN	mRNA	135649	141608	0.68	+	.	ID=Soaet10009170
scaffold5872_cov61	138664	.	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.31;SOR=1.002;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_143400_144542|GENE_EXON_scaffold5872_cov61_143400_144542|transcript|Soaet10009171|protein_coding||c.*4736A>G|||||4736|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_135649_135860|GENE_EXON_scaffold5872_cov61_135649_135860|transcript|Soaet10009170|protein_coding|7/15|c.867-28T>C||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1194,84,0	scaffold5872_cov61	GLEAN	mRNA	135649	141608	0.68	+	.	ID=Soaet10009170
scaffold5872_cov61	141441	.	G	GA	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;DP=23;ExcessHet=3.0103;FS=7.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.99;RPA=8,9;RU=A;ReadPosRankSum=0.585;SOR=0.086;STR;ANN=GA|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_145147_145599|GENE_EXON_scaffold5872_cov61_145147_145599|transcript|Soaet10009172|protein_coding||c.-3706_-3705insA|||||3705|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,GA|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_143400_144542|GENE_EXON_scaffold5872_cov61_143400_144542|transcript|Soaet10009171|protein_coding||c.*1958_*1959insT|||||1958|,GA|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_146240_147517|GENE_EXON_scaffold5872_cov61_146240_147517|transcript|Soaet10009173|protein_coding||c.*4798_*4799insT|||||4798|,GA|intron_variant|MODIFIER|EXON_scaffold5872_cov61_135649_135860|GENE_EXON_scaffold5872_cov61_135649_135860|transcript|Soaet10009170|protein_coding|15/15|c.1812-74_1812-73insA||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:290,0,285	scaffold5872_cov61	GLEAN	mRNA	135649	141608	0.68	+	.	ID=Soaet10009170
scaffold5872_cov61	165748	.	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-1.108;SOR=1.371;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_162419_163019|GENE_EXON_scaffold5872_cov61_162419_163019|transcript|Soaet10009175|protein_coding|2/8|c.746-574G>A||||||	GT:AD:DP:GQ:PL	0/1:12,17:29:99:433,0,355	scaffold5872_cov61	GLEAN	mRNA	162419	169163	0.33	+	.	ID=Soaet10009175
scaffold5872_cov61	166023	.	G	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.247;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.46;ReadPosRankSum=0.806;SOR=1.402;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_170982_171225|GENE_EXON_scaffold5872_cov61_170982_171225|transcript|Soaet10009176|protein_coding||c.-4959G>C|||||4959|,C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_162419_163019|GENE_EXON_scaffold5872_cov61_162419_163019|transcript|Soaet10009175|protein_coding|2/8|c.746-299G>C||||||	GT:AD:DP:GQ:PL	0/1:13,19:32:99:587,0,380	scaffold5872_cov61	GLEAN	mRNA	162419	169163	0.33	+	.	ID=Soaet10009175
scaffold5872_cov61	168207	.	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-0.585;SOR=1.218;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_170982_171225|GENE_EXON_scaffold5872_cov61_170982_171225|transcript|Soaet10009176|protein_coding||c.-2775C>T|||||2775|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_162419_163019|GENE_EXON_scaffold5872_cov61_162419_163019|transcript|Soaet10009175|protein_coding|7/8|c.1345-323C>T||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:293,0,265	scaffold5872_cov61	GLEAN	mRNA	162419	169163	0.33	+	.	ID=Soaet10009175
scaffold5872_cov61	178695	.	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-0.659;SOR=0.368;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold5872_cov61_170982_171225|GENE_EXON_scaffold5872_cov61_170982_171225|transcript|Soaet10009176|protein_coding||c.*4794C>T|||||4794|,T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|1/7|c.287-257C>T||||||	GT:AD:DP:GQ:PL	0/1:8,9:17:99:294,0,198	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	180227	.	A	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DP=19;Dels=0.00;ExcessHet=3.0103;FS=21.553;HaplotypeScore=4.6632;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=1.117;QD=1.77;ReadPosRankSum=0.986;SOR=3.893;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|3/7|c.449+313A>C||||||	GT:AD:DP:GQ:PL	0/1:12,6:19:60:60,0,141	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	181881	.	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.785;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-2.435;QD=1.46;ReadPosRankSum=-0.159;SOR=0.681;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|3/7|c.450-255T>C||||||	GT:AD:DP:GQ:PL	0/1:21,7:28:69:69,0,577	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182349	.	G	T	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=56.00;MQ0=0;MQRankSum=-3.471;QD=0.38;ReadPosRankSum=-0.030;SOR=0.798;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|4/7|c.642+21G>T||||||	GT:AD:DP:GQ:PL	0/1:31,3:34:41:41,0,812	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182376	.	T	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=56.52;MQ0=0;MQRankSum=-3.542;QD=2.44;ReadPosRankSum=-0.778;SOR=0.676;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|4/7|c.642+48T>A||||||	GT:AD:DP:GQ:PL	0/1:31,5:36:99:116,0,857	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182391	.	C	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=0;MQRankSum=-4.363;QD=2.60;ReadPosRankSum=-0.680;SOR=0.473;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|4/7|c.643-58C>G||||||	GT:AD:DP:GQ:PL	0/1:30,6:37:99:122,0,805	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182403	.	G	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.26;MQ0=0;MQRankSum=-4.699;QD=2.91;ReadPosRankSum=-0.219;SOR=0.518;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|4/7|c.643-46G>T||||||	GT:AD:DP:GQ:PL	0/1:29,6:35:99:130,0,717	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182407	.	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=0;MQRankSum=-4.919;QD=2.36;ReadPosRankSum=0.361;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|4/7|c.643-42G>A||||||	GT:AD:DP:GQ:PL	0/1:32,6:38:99:118,0,879	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182539	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.049;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-3.797;QD=1.99;ReadPosRankSum=0.300;SOR=0.799;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|5/8|c.733A>G|p.Thr245Ala|733/2115|733/2115|245/704||	GT:AD:DP:GQ:PL	0/1:23,5:28:84:84,0,710	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182559	.	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-3.954;QD=2.19;ReadPosRankSum=-1.979;SOR=0.883;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|5/8|c.753A>G|p.Arg251Arg|753/2115|753/2115|251/704||	GT:AD:DP:GQ:PL	0/1:25,5:30:94:94,0,717	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	182920	.	T	G	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.764;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=47.56;MQ0=0;MQRankSum=-2.758;QD=0.70;ReadPosRankSum=1.428;SOR=2.262;ANN=G|synonymous_variant|LOW|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|6/8|c.1026T>G|p.Ser342Ser|1026/2115|1026/2115|342/704||	GT:AD:DP:GQ:PL	0/1:24,3:27:47:47,0,726	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183039	.	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.726;HaplotypeScore=8.5095;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=2;MQRankSum=-4.908;QD=2.68;ReadPosRankSum=1.048;SOR=2.424;ANN=C|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|6/7|c.1033-25T>C||||||	GT:AD:DP:GQ:PL	0/1:28,14:42:99:141,0,798	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183074	.	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=47;Dels=0.04;ExcessHet=3.0103;FS=1.830;HaplotypeScore=7.3011;MLEAC=1;MLEAF=0.500;MQ=46.41;MQ0=2;MQRankSum=-4.565;QD=1.37;ReadPosRankSum=-1.128;SOR=1.767;ANN=A|missense_variant|MODERATE|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/8|c.1043G>A|p.Arg348Gln|1043/2115|1043/2115|348/704||	GT:AD:DP:GQ:PL	0/1:32,13:45:90:90,0,881	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183100	.	A	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.81;MQ0=2;MQRankSum=-4.707;QD=3.68;ReadPosRankSum=-2.297;SOR=1.096;ANN=C|missense_variant|MODERATE|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/8|c.1069A>C|p.Ile357Leu|1069/2115|1069/2115|357/704||	GT:AD:DP:GQ:PL	0/1:27,15:42:99:183,0,796	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183424	.	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=0;MQRankSum=-3.000;QD=4.59;ReadPosRankSum=1.630;SOR=0.527;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/8|c.1393A>G|p.Ile465Val|1393/2115|1393/2115|465/704||	GT:AD:DP:GQ:PL	0/1:28,7:35:99:189,0,888	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183520	.	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=0;MQRankSum=-0.112;QD=3.14;ReadPosRankSum=-0.124;SOR=0.787;ANN=T|stop_gained|HIGH|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/8|c.1489C>T|p.Gln497*|1489/2115|1489/2115|497/704||;LOF=(EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|1|1.00);NMD=(EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|1|1.00)	GT:AD:DP:GQ:PL	0/1:28,7:35:99:138,0,789	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183629	.	C	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.582;HaplotypeScore=7.6814;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-3.819;QD=2.87;ReadPosRankSum=-1.335;SOR=1.519;ANN=G|missense_variant|MODERATE|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/8|c.1598C>G|p.Ala533Gly|1598/2115|1598/2115|533/704||	GT:AD:DP:GQ:PL	0/1:33,7:40:99:143,0,1102	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183672	.	C	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=1;MQRankSum=-3.283;QD=2.06;ReadPosRankSum=1.092;SOR=0.641;ANN=A|synonymous_variant|LOW|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/8|c.1641C>A|p.Leu547Leu|1641/2115|1641/2115|547/704||	GT:AD:DP:GQ:PL	0/1:36,10:46:99:123,0,984	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183845	.	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-2.520;QD=1.62;ReadPosRankSum=1.007;SOR=1.128;ANN=G|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/7|c.1674+140A>G||||||	GT:AD:DP:GQ:PL	0/1:21,3:24:67:67,0,612	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183848	.	A	T	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-2.585;QD=0.79;ReadPosRankSum=1.047;SOR=1.087;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/7|c.1674+143A>T||||||	GT:AD:DP:GQ:PL	0/1:22,3:25:48:48,0,632	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183878	.	G	T	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=-2.711;QD=0.99;ReadPosRankSum=0.232;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/7|c.1674+173G>T||||||	GT:AD:DP:GQ:PL	0/1:24,3:27:55:55,0,749	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold5872_cov61	183887	.	G	A	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=-2.648;QD=1.03;ReadPosRankSum=-0.563;SOR=1.071;ANN=A|intron_variant|MODIFIER|EXON_scaffold5872_cov61_177672_177957|GENE_EXON_scaffold5872_cov61_177672_177957|transcript|Soaet10009177|protein_coding|7/7|c.1674+182G>A||||||	GT:AD:DP:GQ:PL	0/1:23,3:26:55:55,0,728	scaffold5872_cov61	GLEAN	mRNA	177672	184593	1.00	+	.	ID=Soaet10009177
scaffold6835_cov62	11319	.	C	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.1561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.40;ReadPosRankSum=1.004;SOR=0.776;ANN=T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_11258_11266|GENE_EXON_scaffold6835_cov62_11258_11266|transcript|Soaet10008373|protein_coding|1/2|c.9+53C>T||||||	GT:AD:DP:GQ:PL	0/1:18,19:37:99:524,0,538	scaffold6835_cov62	GLEAN	mRNA	11258	11882	0.71	+	.	ID=Soaet10008373
scaffold6835_cov62	11532	.	C	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.69;ReadPosRankSum=0.808;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_11258_11266|GENE_EXON_scaffold6835_cov62_11258_11266|transcript|Soaet10008373|protein_coding|2/3|c.64C>T|p.His22Tyr|64/186|64/186|22/61||	GT:AD:DP:GQ:PL	0/1:19,17:36:99:485,0,580	scaffold6835_cov62	GLEAN	mRNA	11258	11882	0.71	+	.	ID=Soaet10008373
scaffold6835_cov62	11672	.	A	G	737.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.53;SOR=1.329;ANN=G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_11258_11266|GENE_EXON_scaffold6835_cov62_11258_11266|transcript|Soaet10008373|protein_coding|2/2|c.127+77A>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:766,54,0	scaffold6835_cov62	GLEAN	mRNA	11258	11882	0.71	+	.	ID=Soaet10008373
scaffold6835_cov62	11673	.	A	G	718.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.67;SOR=1.329;ANN=G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_11258_11266|GENE_EXON_scaffold6835_cov62_11258_11266|transcript|Soaet10008373|protein_coding|2/2|c.127+78A>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:747,54,0	scaffold6835_cov62	GLEAN	mRNA	11258	11882	0.71	+	.	ID=Soaet10008373
scaffold6835_cov62	95393	.	A	T	989.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.89;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_93466_95408|GENE_EXON_scaffold6835_cov62_93466_95408|transcript|Soaet10008374|protein_coding|1/2|c.1928A>T|p.Gln643Leu|1928/2286|1928/2286|643/761||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_99093_99149|GENE_EXON_scaffold6835_cov62_99093_99149|transcript|Soaet10008375|protein_coding||c.-3700A>T|||||3700|	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1018,75,0	scaffold6835_cov62	GLEAN	mRNA	93466	96000	0.96	+	.	ID=Soaet10008374
scaffold6835_cov62	95600	.	C	G	1280.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.02;SOR=1.022;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_99093_99149|GENE_EXON_scaffold6835_cov62_99093_99149|transcript|Soaet10008375|protein_coding||c.-3493C>G|||||3493|,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_93466_95408|GENE_EXON_scaffold6835_cov62_93466_95408|transcript|Soaet10008374|protein_coding|1/1|c.1944-58C>G||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1309,93,0	scaffold6835_cov62	GLEAN	mRNA	93466	96000	0.96	+	.	ID=Soaet10008374
scaffold6835_cov62	95823	.	C	T	1533.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.68;SOR=0.859;ANN=T|synonymous_variant|LOW|EXON_scaffold6835_cov62_93466_95408|GENE_EXON_scaffold6835_cov62_93466_95408|transcript|Soaet10008374|protein_coding|2/2|c.2109C>T|p.His703His|2109/2286|2109/2286|703/761||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_99093_99149|GENE_EXON_scaffold6835_cov62_99093_99149|transcript|Soaet10008375|protein_coding||c.-3270C>T|||||3270|	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1562,111,0	scaffold6835_cov62	GLEAN	mRNA	93466	96000	0.96	+	.	ID=Soaet10008374
scaffold6835_cov62	99161	.	C	T	1087.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.96;SOR=0.880;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_93466_95408|GENE_EXON_scaffold6835_cov62_93466_95408|transcript|Soaet10008374|protein_coding||c.*3161C>T|||||3161|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_99093_99149|GENE_EXON_scaffold6835_cov62_99093_99149|transcript|Soaet10008375|protein_coding|1/1|c.57+12C>T||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1116,81,0	scaffold6835_cov62	GLEAN	mRNA	99093	99345	0.60	+	.	ID=Soaet10008375
scaffold6835_cov62	99206	.	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.38;SOR=0.804;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_93466_95408|GENE_EXON_scaffold6835_cov62_93466_95408|transcript|Soaet10008374|protein_coding||c.*3206T>C|||||3206|,C|intron_variant|MODIFIER|EXON_scaffold6835_cov62_99093_99149|GENE_EXON_scaffold6835_cov62_99093_99149|transcript|Soaet10008375|protein_coding|1/1|c.58-17T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1230,87,0	scaffold6835_cov62	GLEAN	mRNA	99093	99345	0.60	+	.	ID=Soaet10008375
scaffold6835_cov62	99211	.	A	T	1112.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.77;SOR=0.818;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_93466_95408|GENE_EXON_scaffold6835_cov62_93466_95408|transcript|Soaet10008374|protein_coding||c.*3211A>T|||||3211|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_99093_99149|GENE_EXON_scaffold6835_cov62_99093_99149|transcript|Soaet10008375|protein_coding|1/1|c.58-12A>T||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1141,81,0	scaffold6835_cov62	GLEAN	mRNA	99093	99345	0.60	+	.	ID=Soaet10008375
scaffold6835_cov62	137996	.	G	A	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;DP=187;Dels=0.00;ExcessHet=3.0103;FS=2.198;HaplotypeScore=10.1364;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=106;MQRankSum=-6.624;QD=3.99;ReadPosRankSum=3.196;SOR=0.487;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding|2/2|c.167C>T|p.Ser56Leu|167/192|167/192|56/63||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1751G>A|||||1751|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2701G>A|||||2701|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3736G>A|||||3736|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.*257C>T|||||257|	GT:AD:DP:GQ:PL	0/1:19,159:187:99:738,0,508	scaffold6835_cov62	GLEAN	mRNA	137971	138199	1.00	-	.	ID=Soaet10008377
scaffold6835_cov62	138016	.	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.938;HaplotypeScore=5.4115;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=105;MQRankSum=-6.353;QD=3.69;ReadPosRankSum=0.214;SOR=0.570;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding|2/2|c.147T>C|p.Leu49Leu|147/192|147/192|49/63||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1731A>G|||||1731|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2681A>G|||||2681|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3716A>G|||||3716|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.*237T>C|||||237|	GT:AD:DP:GQ:PL	0/1:22,160:182:99:699,0,592	scaffold6835_cov62	GLEAN	mRNA	137971	138199	1.00	-	.	ID=Soaet10008377
scaffold6835_cov62	138027	.	C	T	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DP=185;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4956;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=105;MQRankSum=6.852;QD=3.01;ReadPosRankSum=-0.213;SOR=0.682;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding|2/2|c.136G>A|p.Gly46Arg|136/192|136/192|46/63||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1720C>T|||||1720|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2670C>T|||||2670|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3705C>T|||||3705|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.*226G>A|||||226|	GT:AD:DP:GQ:PL	0/1:164,21:185:99:586,0,821	scaffold6835_cov62	GLEAN	mRNA	137971	138199	1.00	-	.	ID=Soaet10008377
scaffold6835_cov62	138072	.	A	G	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=1;MQRankSum=-4.764;QD=1.03;ReadPosRankSum=-3.686;SOR=0.735;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding|2/2|c.91T>C|p.Ser31Pro|91/192|91/192|31/63||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1675A>G|||||1675|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2625A>G|||||2625|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3660A>G|||||3660|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.*181T>C|||||181|	GT:AD:DP:GQ:PL	0/1:20,8:28:57:57,0,514	scaffold6835_cov62	GLEAN	mRNA	137971	138199	1.00	-	.	ID=Soaet10008377
scaffold6835_cov62	138165	.	T	C	3757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=225;Dels=0.00;ExcessHet=3.0103;FS=5.319;HaplotypeScore=9.9752;MLEAC=1;MLEAF=0.500;MQ=40.00;MQ0=0;MQRankSum=-6.581;QD=16.78;ReadPosRankSum=-3.173;SOR=0.835;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding|1/2|c.35A>G|p.His12Arg|35/192|35/192|12/63||,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1582T>C|||||1582|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2532T>C|||||2532|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3567T>C|||||3567|,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.*88A>G|||||88|	GT:AD:DP:GQ:PL	0/1:18,206:225:99:3786,0,236	scaffold6835_cov62	GLEAN	mRNA	137971	138199	1.00	-	.	ID=Soaet10008377
scaffold6835_cov62	138253	.	T	C	3556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;DP=247;Dels=0.00;ExcessHet=3.0103;FS=2.116;HaplotypeScore=7.8246;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=24;MQRankSum=-6.655;QD=14.40;ReadPosRankSum=2.854;SOR=1.068;ANN=C|splice_region_variant&stop_retained_variant|LOW|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding|2/2|c.213A>G|p.Ter71Ter|213/213|213/213|71/70||,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-54A>G|||||54|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1494T>C|||||1494|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2444T>C|||||2444|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3479T>C|||||3479|	GT:AD:DP:GQ:PL	0/1:18,229:247:99:3585,0,259	scaffold6835_cov62	GLEAN	mRNA	138253	138484	0.32	-	.	ID=Soaet10008378
scaffold6835_cov62	138254	.	T	G	3578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;DP=247;Dels=0.00;ExcessHet=3.0103;FS=2.111;HaplotypeScore=7.5738;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=24;MQRankSum=-6.652;QD=14.55;ReadPosRankSum=2.665;SOR=1.057;ANN=G|stop_lost&splice_region_variant|HIGH|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding|2/2|c.212A>C|p.Ter71Serext*?|212/213|212/213|71/70||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-55A>C|||||55|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1493T>G|||||1493|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2443T>G|||||2443|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3478T>G|||||3478|	GT:AD:DP:GQ:PL	0/1:18,228:247:99:3607,0,261	scaffold6835_cov62	GLEAN	mRNA	138253	138484	0.32	-	.	ID=Soaet10008378
scaffold6835_cov62	138309	.	A	G	2106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=169;Dels=0.00;ExcessHet=3.0103;FS=20.444;HaplotypeScore=5.4728;MLEAC=1;MLEAF=0.500;MQ=33.05;MQ0=19;MQRankSum=-7.352;QD=12.47;ReadPosRankSum=-5.532;SOR=2.094;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding|2/2|c.157T>C|p.Ser53Pro|157/213|157/213|53/70||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-110T>C|||||110|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1438A>G|||||1438|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2388A>G|||||2388|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3423A>G|||||3423|	GT:AD:DP:GQ:PL	0/1:21,148:169:99:2135,0,410	scaffold6835_cov62	GLEAN	mRNA	138253	138484	0.32	-	.	ID=Soaet10008378
scaffold6835_cov62	138318	.	A	G	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;DP=75;Dels=0.00;ExcessHet=3.0103;FS=25.518;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=4;MQRankSum=-6.366;QD=9.45;ReadPosRankSum=-5.377;SOR=3.865;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding|1/1|c.151-3T>C||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-119T>C|||||119|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1429A>G|||||1429|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2379A>G|||||2379|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3414A>G|||||3414|	GT:AD:DP:GQ:PL	0/1:18,57:75:99:737,0,435	scaffold6835_cov62	GLEAN	mRNA	138253	138484	0.32	-	.	ID=Soaet10008378
scaffold6835_cov62	138345	.	C	T	477.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.10;SOR=1.061;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding|1/2|c.140G>A|p.Arg47Gln|140/213|140/213|47/70||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-146G>A|||||146|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.-1402C>T|||||1402|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-2352C>T|||||2352|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-3387C>T|||||3387|	GT:AD:DP:GQ:PL	1/1:0,17:17:36:506,36,0	scaffold6835_cov62	GLEAN	mRNA	138253	138484	0.32	-	.	ID=Soaet10008378
scaffold6835_cov62	139774	.	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DP=122;Dels=0.00;ExcessHet=3.0103;FS=31.156;HaplotypeScore=3.9430;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=55;MQRankSum=-5.167;QD=2.79;ReadPosRankSum=3.148;SOR=3.863;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding|1/2|c.28A>G|p.Met10Val|28/141|28/141|10/46||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-1575T>C|||||1575|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-1290T>C|||||1290|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-923A>G|||||923|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-1958A>G|||||1958|	GT:AD:DP:GQ:PL	0/1:14,108:122:99:369,0,374	scaffold6835_cov62	GLEAN	mRNA	139747	139949	1.00	+	.	ID=Soaet10008380
scaffold6835_cov62	139783	.	A	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=164;Dels=0.00;ExcessHet=3.0103;FS=1.124;HaplotypeScore=4.3440;MLEAC=1;MLEAF=0.500;MQ=19.62;MQ0=67;MQRankSum=-5.191;QD=3.53;ReadPosRankSum=1.163;SOR=1.022;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding|1/2|c.37A>C|p.Ile13Leu|37/141|37/141|13/46||,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-1584T>G|||||1584|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-1299T>G|||||1299|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-914A>C|||||914|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-1949A>C|||||1949|	GT:AD:DP:GQ:PL	0/1:17,146:164:99:604,0,372	scaffold6835_cov62	GLEAN	mRNA	139747	139949	1.00	+	.	ID=Soaet10008380
scaffold6835_cov62	139875	.	T	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=198;Dels=0.00;ExcessHet=3.0103;FS=4.656;HaplotypeScore=10.2674;MLEAC=1;MLEAF=0.500;MQ=17.17;MQ0=95;MQRankSum=-5.602;QD=2.87;ReadPosRankSum=-0.839;SOR=0.897;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-1676A>C|||||1676|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-1391A>C|||||1391|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-822T>G|||||822|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-1857T>G|||||1857|,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding|1/1|c.101+28T>G||||||	GT:AD:DP:GQ:PL	0/1:19,179:198:99:597,0,306	scaffold6835_cov62	GLEAN	mRNA	139747	139949	1.00	+	.	ID=Soaet10008380
scaffold6835_cov62	139893	.	C	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;DP=146;Dels=0.00;ExcessHet=3.0103;FS=38.025;HaplotypeScore=5.3133;MLEAC=1;MLEAF=0.500;MQ=19.42;MQ0=73;MQRankSum=6.106;QD=2.02;ReadPosRankSum=2.398;SOR=0.914;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-1694G>A|||||1694|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-1409G>A|||||1409|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-804C>T|||||804|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-1839C>T|||||1839|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding|1/1|c.102-17C>T||||||	GT:AD:DP:GQ:PL	0/1:129,17:146:99:323,0,421	scaffold6835_cov62	GLEAN	mRNA	139747	139949	1.00	+	.	ID=Soaet10008380
scaffold6835_cov62	139928	.	T	C	807.77	.	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=38;QD=8.78;SOR=2.480;ANN=C|synonymous_variant|LOW|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding|2/2|c.120T>C|p.Ser40Ser|120/141|120/141|40/46||,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-1729A>G|||||1729|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-1444A>G|||||1444|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.-769T>C|||||769|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding||c.-1804T>C|||||1804|	GT:AD:DP:GQ:PL	1/1:0,92:92:72:836,72,0	scaffold6835_cov62	GLEAN	mRNA	139747	139949	1.00	+	.	ID=Soaet10008380
scaffold6835_cov62	141740	.	A	G	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.20;MQ0=45;MQRankSum=-4.618;QD=0.13;ReadPosRankSum=-2.775;SOR=0.430;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding|1/1|c.9A>G|p.Lys3Lys|9/306|9/306|3/101||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-3541T>C|||||3541|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-3256T>C|||||3256|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.*1791A>G|||||1791|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.*852A>G|||||852|	GT:AD:DP:GQ:PL	0/1:13,64:77:38:38,0,319	scaffold6835_cov62	GLEAN	mRNA	141732	142037	0.97	+	.	ID=Soaet10008382
scaffold6835_cov62	141781	.	A	G	393.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=28.13;SOR=1.329;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding|1/1|c.50A>G|p.Lys17Arg|50/306|50/306|17/101||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-3582T>C|||||3582|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-3297T>C|||||3297|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.*1832A>G|||||1832|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.*893A>G|||||893|	GT:AD:DP:GQ:PL	1/1:0,14:14:30:422,30,0	scaffold6835_cov62	GLEAN	mRNA	141732	142037	0.97	+	.	ID=Soaet10008382
scaffold6835_cov62	141844	.	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.829;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=39.31;MQ0=24;MQRankSum=0.849;QD=3.48;ReadPosRankSum=-0.285;SOR=0.559;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding|1/1|c.113G>A|p.Arg38Gln|113/306|113/306|38/101||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-3645C>T|||||3645|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-3360C>T|||||3360|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.*1895G>A|||||1895|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.*956G>A|||||956|	GT:AD:DP:GQ:PL	0/1:36,9:46:99:185,0,261	scaffold6835_cov62	GLEAN	mRNA	141732	142037	0.97	+	.	ID=Soaet10008382
scaffold6835_cov62	141889	.	G	T	463.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.978;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=26;MQRankSum=2.742;QD=10.08;ReadPosRankSum=0.316;SOR=0.105;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding|1/1|c.158G>T|p.Arg53Ile|158/306|158/306|53/101||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-3690C>A|||||3690|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-3405C>A|||||3405|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.*1940G>T|||||1940|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.*1001G>T|||||1001|	GT:AD:DP:GQ:PL	1/1:28,18:46:15:492,15,0	scaffold6835_cov62	GLEAN	mRNA	141732	142037	0.97	+	.	ID=Soaet10008382
scaffold6835_cov62	141906	.	C	T	512.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=26;MQRankSum=3.225;QD=10.68;ReadPosRankSum=1.150;SOR=0.610;ANN=T|stop_gained|HIGH|EXON_scaffold6835_cov62_141732_142037|GENE_EXON_scaffold6835_cov62_141732_142037|transcript|Soaet10008382|protein_coding|1/1|c.175C>T|p.Gln59*|175/306|175/306|59/101||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_137971_138099|GENE_EXON_scaffold6835_cov62_137971_138099|transcript|Soaet10008377|protein_coding||c.-3707G>A|||||3707|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_138253_138315|GENE_EXON_scaffold6835_cov62_138253_138315|transcript|Soaet10008378|protein_coding||c.-3422G>A|||||3422|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_139747_139847|GENE_EXON_scaffold6835_cov62_139747_139847|transcript|Soaet10008380|protein_coding||c.*1957C>T|||||1957|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_140697_140888|GENE_EXON_scaffold6835_cov62_140697_140888|transcript|Soaet10008381|protein_coding||c.*1018C>T|||||1018|	GT:AD:DP:GQ:PL	1/1:29,19:48:18:541,18,0	scaffold6835_cov62	GLEAN	mRNA	141732	142037	0.97	+	.	ID=Soaet10008382
scaffold6835_cov62	166446	.	G	A	335.78	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=5;QD=19.75;SOR=1.022;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5919C>T|p.Ser1973Ser|5919/5952|5919/5952|1973/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,17:17:27:364,27,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166493	.	G	A	180.9	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9986;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=4;QD=16.45;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5872C>T|p.Arg1958Trp|5872/5952|5872/5952|1958/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,10:11:15:209,15,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166500	.	G	GA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=13;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=47.56;MQ0=0;MQRankSum=0.812;QD=11.53;RPA=10,11;RU=A;ReadPosRankSum=1.122;SOR=0.160;STR;ANN=GA|frameshift_variant|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5864dupT|p.Thr1956fs|5864/5952|5864/5952|1955/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:3,6:9:61:141,0,61	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166580	.	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.528;HaplotypeScore=8.7109;MLEAC=1;MLEAF=0.500;MQ=51.79;MQ0=1;MQRankSum=0.513;QD=5.58;ReadPosRankSum=-0.411;SOR=0.080;ANN=A|stop_gained|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5785C>T|p.Arg1929*|5785/5952|5785/5952|1929/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,7:22:99:151,0,425	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166588	.	C	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7109;MLEAC=1;MLEAF=0.500;MQ=53.01;MQ0=0;MQRankSum=0.226;QD=13.85;ReadPosRankSum=0.000;SOR=0.760;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5777G>A|p.Arg1926His|5777/5952|5777/5952|1926/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:319,0,301	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166600	.	C	T	707.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=30.77;SOR=1.426;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5765G>A|p.Cys1922Tyr|5765/5952|5765/5952|1922/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:24:57:736,57,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166627	.	G	A	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8586;MLEAC=1;MLEAF=0.500;MQ=54.28;MQ0=0;MQRankSum=2.224;QD=23.21;ReadPosRankSum=-0.990;SOR=0.446;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5738C>T|p.Ala1913Val|5738/5952|5738/5952|1913/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,23:29:43:655,0,43	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166634	.	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5632;MLEAC=1;MLEAF=0.500;MQ=54.06;MQ0=0;MQRankSum=-0.082;QD=4.03;ReadPosRankSum=0.960;SOR=0.770;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5731G>A|p.Asp1911Asn|5731/5952|5731/5952|1911/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,9:28:99:141,0,434	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166694	.	T	C	872.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=32.32;SOR=0.922;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5671A>G|p.Thr1891Ala|5671/5952|5671/5952|1891/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:901,66,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	166838	.	A	G	733.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.349;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7475;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=1.612;QD=24.46;ReadPosRankSum=1.040;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5527T>C|p.Ser1843Pro|5527/5952|5527/5952|1843/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,28:30:15:762,15,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	167319	.	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=2;MQRankSum=0.000;QD=12.85;ReadPosRankSum=1.209;SOR=0.307;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.5046T>C|p.Phe1682Phe|5046/5952|5046/5952|1682/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,9:15:99:221,0,102	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	167414	.	G	T	518.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8288;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=27.30;SOR=0.793;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4951C>A|p.Gln1651Lys|4951/5952|4951/5952|1651/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:547,39,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	167737	.	T	C	253.8	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=18.13;SOR=0.693;ANN=C|stop_retained_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4628A>G|p.Ter1543Ter|4628/5952|4628/5952|1543/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:21:282,21,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	167788	.	A	G	229.84	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=19.15;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4577T>C|p.Val1526Ala|4577/5952|4577/5952|1526/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,12:12:18:258,18,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	167809	.	G	A	234.8	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=21.35;SOR=1.802;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4556C>T|p.Ser1519Leu|4556/5952|4556/5952|1519/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,11:11:21:263,21,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	167925	.	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.92;MQ0=2;MQRankSum=-2.128;QD=2.73;ReadPosRankSum=0.930;SOR=0.307;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4440C>A|p.Ser1480Arg|4440/5952|4440/5952|1480/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,6:12:61:61,0,145	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	167964	.	T	A	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=49.83;MQ0=2;MQRankSum=-2.838;QD=1.00;ReadPosRankSum=0.794;SOR=0.551;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4401A>T|p.Arg1467Arg|4401/5952|4401/5952|1467/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,5:14:42:42,0,235	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	168072	.	A	T	700.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=33.37;SOR=1.828;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4293T>A|p.His1431Gln|4293/5952|4293/5952|1431/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:729,54,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	168234	.	A	G	805.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=33.57;SOR=1.519;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4131T>C|p.Asn1377Asn|4131/5952|4131/5952|1377/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:834,60,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	168242	.	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=50.24;MQ0=0;MQRankSum=-2.163;QD=20.07;ReadPosRankSum=-0.575;SOR=1.165;ANN=A|stop_gained|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.4123C>T|p.Gln1375*|4123/5952|4123/5952|1375/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,18:25:99:530,0,171	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	168367	.	G	A	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7474;MLEAC=1;MLEAF=0.500;MQ=51.42;MQ0=0;MQRankSum=-1.830;QD=0.41;ReadPosRankSum=-0.510;SOR=0.446;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.3998C>T|p.Pro1333Leu|3998/5952|3998/5952|1333/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,6:25:38:38,0,553	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	168391	.	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.0447;MLEAC=1;MLEAF=0.500;MQ=53.67;MQ0=0;MQRankSum=0.765;QD=5.82;ReadPosRankSum=-0.854;SOR=1.061;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.3974C>T|p.Ala1325Val|3974/5952|3974/5952|1325/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,8:29:99:197,0,453	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	168851	.	A	G	602.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=25.12;SOR=0.859;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.3514T>C|p.Ser1172Pro|3514/5952|3514/5952|1172/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-4587A>G|||||4587|	GT:AD:DP:GQ:PL	1/1:0,24:24:45:631,45,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	168991	.	A	G	263.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;QD=29.31;SOR=2.093;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.3374T>C|p.Val1125Ala|3374/5952|3374/5952|1125/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-4447A>G|||||4447|	GT:AD:DP:GQ:PL	1/1:0,9:9:21:292,21,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169108	.	T	C	94.28	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=3;QD=10.48;SOR=1.329;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.3257A>G|p.Tyr1086Cys|3257/5952|3257/5952|1086/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-4330T>C|||||4330|	GT:AD:DP:GQ:PL	1/1:0,9:9:9:122,9,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169156	.	G	A	106.28	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=3;QD=7.59;SOR=0.859;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.3209C>T|p.Thr1070Met|3209/5952|3209/5952|1070/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-4282G>A|||||4282|	GT:AD:DP:GQ:PL	1/1:0,14:14:9:134,9,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169382	.	A	G	45.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=1;QD=15.25;SOR=2.303;ANN=G|stop_lost|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2983T>C|p.Ter995Glnext*?|2983/5952|2983/5952|995/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-4056A>G|||||4056|	GT:AD:DP:GQ:PL	1/1:0,3:3:6:73,6,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169388	.	G	T	81.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=1;QD=20.32;SOR=2.833;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2977C>A|p.Pro993Thr|2977/5952|2977/5952|993/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-4050G>T|||||4050|	GT:AD:DP:GQ:PL	1/1:0,4:4:9:109,9,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169561	.	T	G	232.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=25.87;SOR=0.892;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2804A>C|p.Gln935Pro|2804/5952|2804/5952|935/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3877T>G|||||3877|	GT:AD:DP:GQ:PL	1/1:0,9:9:18:261,18,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169824	.	A	G	272.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=27.28;SOR=1.085;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2541T>C|p.Thr847Thr|2541/5952|2541/5952|847/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3614A>G|||||3614|	GT:AD:DP:GQ:PL	1/1:0,10:10:21:301,21,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169951	.	C	T	393.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.29;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2414G>A|p.Arg805Lys|2414/5952|2414/5952|805/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3487C>T|||||3487|	GT:AD:DP:GQ:PL	1/1:0,13:13:30:422,30,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	169996	.	T	C	518.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=28.82;SOR=1.493;ANN=C|stop_lost|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2369A>G|p.Ter790Trpext*?|2369/5952|2369/5952|790/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3442T>C|||||3442|	GT:AD:DP:GQ:PL	1/1:0,18:19:39:547,39,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170062	.	T	G	790.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=28.94;SOR=1.085;ANN=G|stop_lost|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2303A>C|p.Ter768Serext*?|2303/5952|2303/5952|768/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3376T>G|||||3376|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4947T>G|||||4947|	GT:AD:DP:GQ:PL	1/1:0,22:22:60:819,60,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170337	.	G	A	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.792;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=55.64;MQ0=0;MQRankSum=-1.617;QD=19.48;ReadPosRankSum=0.516;SOR=1.265;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.2028C>T|p.His676His|2028/5952|2028/5952|676/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3101G>A|||||3101|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4672G>A|||||4672|	GT:AD:DP:GQ:PL	0/1:13,30:43:99:866,0,382	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170388	.	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=33.84;SOR=1.051;ANN=T|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1977G>A|p.Ala659Ala|1977/5952|1977/5952|659/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3050C>T|||||3050|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4621C>T|||||4621|	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1720,129,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170421	.	C	T	1467.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=2;QD=31.23;SOR=0.737;ANN=T|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1944G>A|p.Pro648Pro|1944/5952|1944/5952|648/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-3017C>T|||||3017|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4588C>T|||||4588|	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1496,111,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170592	.	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.42;MQ0=1;MQRankSum=-0.254;QD=14.85;ReadPosRankSum=0.856;SOR=1.445;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1773C>T|p.Phe591Phe|1773/5952|1773/5952|591/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2846G>A|||||2846|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4417G>A|||||4417|	GT:AD:DP:GQ:PL	0/1:13,15:28:99:444,0,316	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170665	.	A	T	52.74	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=8.79;SOR=0.693;ANN=T|stop_gained|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1700T>A|p.Leu567*|1700/5952|1700/5952|567/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2773A>T|||||2773|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4344A>T|||||4344|	GT:AD:DP:GQ:PL	1/1:0,6:6:6:80,6,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170666	.	A	C	52.74	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=8.79;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1699T>G|p.Leu567Val|1699/5952|1699/5952|567/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2772A>C|||||2772|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4343A>C|||||4343|	GT:AD:DP:GQ:PL	1/1:0,6:6:6:80,6,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170693	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.500;MQ=40.62;MQ0=0;MQRankSum=1.601;QD=6.65;ReadPosRankSum=1.035;SOR=1.329;ANN=A|stop_gained|HIGH|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1672C>T|p.Arg558*|1672/5952|1672/5952|558/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2745G>A|||||2745|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4316G>A|||||4316|	GT:AD:DP:GQ:PL	0/1:6,6:12:99:108,0,141	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170847	.	G	A	721.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=31.38;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1518C>T|p.Ser506Ser|1518/5952|1518/5952|506/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2591G>A|||||2591|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4162G>A|||||4162|	GT:AD:DP:GQ:PL	1/1:0,23:23:54:750,54,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170909	.	G	T	802.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=30.88;SOR=1.445;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1456C>A|p.Arg486Ser|1456/5952|1456/5952|486/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2529G>T|||||2529|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4100G>T|||||4100|	GT:AD:DP:GQ:PL	1/1:0,26:26:60:831,60,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	170955	.	T	C	650.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=29.58;SOR=0.874;ANN=C|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1410A>G|p.Ala470Ala|1410/5952|1410/5952|470/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2483T>C|||||2483|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-4054T>C|||||4054|	GT:AD:DP:GQ:PL	1/1:0,22:22:48:679,48,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171228	.	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=1.271;QD=7.67;ReadPosRankSum=0.100;SOR=0.791;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1137C>T|p.Cys379Cys|1137/5952|1137/5952|379/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2210G>A|||||2210|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3781G>A|||||3781|	GT:AD:DP:GQ:PL	0/1:13,9:22:99:197,0,354	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171231	.	T	C	635.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=28.90;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1134A>G|p.Ile378Met|1134/5952|1134/5952|378/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2207T>C|||||2207|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3778T>C|||||3778|	GT:AD:DP:GQ:PL	1/1:0,22:22:48:664,48,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171290	.	G	A	777.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=28.81;SOR=0.922;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1075C>T|p.His359Tyr|1075/5952|1075/5952|359/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2148G>A|||||2148|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3719G>A|||||3719|	GT:AD:DP:GQ:PL	1/1:0,27:27:57:806,57,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171317	.	C	T	659.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.42;SOR=0.990;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.1048G>A|p.Glu350Lys|1048/5952|1048/5952|350/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-2121C>T|||||2121|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3692C>T|||||3692|	GT:AD:DP:GQ:PL	1/1:0,21:21:48:688,48,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171563	.	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=57.81;MQ0=0;MQRankSum=0.032;QD=8.67;ReadPosRankSum=1.374;SOR=1.329;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.802C>T|p.His268Tyr|802/5952|802/5952|268/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1875G>A|||||1875|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3446G>A|||||3446|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4826G>A|||||4826|	GT:AD:DP:GQ:PL	0/1:8,5:13:99:141,0,210	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171724	.	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8143;MLEAC=1;MLEAF=0.500;MQ=48.17;MQ0=0;MQRankSum=-3.067;QD=12.16;ReadPosRankSum=0.976;SOR=0.223;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.641T>C|p.Ile214Thr|641/5952|641/5952|214/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1714A>G|||||1714|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3285A>G|||||3285|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4665A>G|||||4665|	GT:AD:DP:GQ:PL	0/1:5,6:11:99:162,0,163	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171745	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.48;MQ0=0;MQRankSum=-0.705;QD=1.38;ReadPosRankSum=-1.652;SOR=0.105;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.620C>T|p.Ala207Val|620/5952|620/5952|207/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1693G>A|||||1693|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3264G>A|||||3264|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4644G>A|||||4644|	GT:AD:DP:GQ:PL	0/1:14,4:18:53:53,0,348	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171798	.	C	T	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.39;MQ0=0;MQRankSum=-1.004;QD=0.50;ReadPosRankSum=1.459;SOR=0.307;ANN=T|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.567G>A|p.Thr189Thr|567/5952|567/5952|189/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1640C>T|||||1640|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3211C>T|||||3211|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4591C>T|||||4591|	GT:AD:DP:GQ:PL	0/1:22,4:26:41:41,0,518	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171826	.	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.66;MQ0=1;MQRankSum=1.578;QD=3.71;ReadPosRankSum=-0.107;SOR=0.515;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.539G>A|p.Cys180Tyr|539/5952|539/5952|180/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1612C>T|||||1612|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3183C>T|||||3183|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4563C>T|||||4563|	GT:AD:DP:GQ:PL	0/1:20,5:25:99:121,0,471	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171837	.	G	A	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9989;MLEAC=1;MLEAF=0.500;MQ=53.96;MQ0=1;MQRankSum=-1.621;QD=0.53;ReadPosRankSum=1.167;SOR=1.038;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.528C>T|p.Ile176Ile|528/5952|528/5952|176/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1601G>A|||||1601|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3172G>A|||||3172|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4552G>A|||||4552|	GT:AD:DP:GQ:PL	0/1:18,3:21:39:39,0,547	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171841	.	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=9.9989;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=1;MQRankSum=-2.889;QD=2.22;ReadPosRankSum=2.566;SOR=2.814;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.524G>A|p.Arg175His|524/5952|524/5952|175/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1597C>T|||||1597|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3168C>T|||||3168|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4548C>T|||||4548|	GT:AD:DP:GQ:PL	0/1:18,4:22:77:77,0,505	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171845	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9989;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=1;MQRankSum=-1.939;QD=0.46;ReadPosRankSum=0.046;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.520G>A|p.Ala174Thr|520/5952|520/5952|174/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1593C>T|||||1593|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3164C>T|||||3164|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4544C>T|||||4544|	GT:AD:DP:GQ:PL	0/1:21,3:24:39:39,0,554	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171862	.	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.226;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=56.02;MQ0=1;MQRankSum=-3.498;QD=1.36;ReadPosRankSum=1.205;SOR=2.683;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.503C>T|p.Ser168Phe|503/5952|503/5952|168/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1576G>A|||||1576|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3147G>A|||||3147|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4527G>A|||||4527|	GT:AD:DP:GQ:PL	0/1:23,4:27:65:65,0,650	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171890	.	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=1;MQRankSum=-3.895;QD=2.08;ReadPosRankSum=-2.262;SOR=2.461;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.475A>G|p.Arg159Gly|475/5952|475/5952|159/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1548T>C|||||1548|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3119T>C|||||3119|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4499T>C|||||4499|	GT:AD:DP:GQ:PL	0/1:18,4:22:74:74,0,539	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	171891	.	T	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=1;MQRankSum=-3.991;QD=1.99;ReadPosRankSum=-2.010;SOR=2.303;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.474A>C|p.Ser158Ser|474/5952|474/5952|158/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1547T>G|||||1547|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-3118T>G|||||3118|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4498T>G|||||4498|	GT:AD:DP:GQ:PL	0/1:19,4:23:74:74,0,534	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	172239	.	T	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.86;ReadPosRankSum=0.221;SOR=0.283;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.126A>T|p.Gly42Gly|126/5952|126/5952|42/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1199T>A|||||1199|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-2770T>A|||||2770|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4150T>A|||||4150|	GT:AD:DP:GQ:PL	0/1:9,14:23:99:416,0,244	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	172245	.	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.89;ReadPosRankSum=-0.448;SOR=0.223;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.120C>T|p.Cys40Cys|120/5952|120/5952|40/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1193G>A|||||1193|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-2764G>A|||||2764|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4144G>A|||||4144|	GT:AD:DP:GQ:PL	0/1:7,14:21:99:404,0,194	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	172310	.	T	C	383.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding|1/1|c.55A>G|p.Ile19Val|55/5952|55/5952|19/1983||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.-1128T>C|||||1128|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-2699T>C|||||2699|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-4079T>C|||||4079|	GT:AD:DP:GQ:PL	1/1:0,10:10:30:412,30,0	scaffold6835_cov62	GLEAN	mRNA	166413	172364	0.31	-	.	ID=Soaet10008383
scaffold6835_cov62	173489	.	G	A	861.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.73;SOR=1.143;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/3|c.52G>A|p.Ala18Thr|52/654|52/654|18/217||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1125C>T|||||1125|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1520G>A|||||1520|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2900G>A|||||2900|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-4101G>A|||||4101|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:63:890,63,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173503	.	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.260;QD=8.14;ReadPosRankSum=1.049;SOR=0.719;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/3|c.66G>A|p.Leu22Leu|66/654|66/654|22/217||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1139C>T|||||1139|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1506G>A|||||1506|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2886G>A|||||2886|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-4087G>A|||||4087|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,12:33:99:297,0,533	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173605	.	T	C	913.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=31.51;SOR=1.255;ANN=C|synonymous_variant|LOW|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/3|c.168T>C|p.Ile56Ile|168/654|168/654|56/217||,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1241A>G|||||1241|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1404T>C|||||1404|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2784T>C|||||2784|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3985T>C|||||3985|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:942,69,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173658	.	C	T	712.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.51;SOR=0.770;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/2|c.217+4C>T||||||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1294G>A|||||1294|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1351C>T|||||1351|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2731C>T|||||2731|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3932C>T|||||3932|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:741,54,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173705	.	A	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.25;ReadPosRankSum=1.735;SOR=1.093;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1341T>A|||||1341|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1304A>T|||||1304|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2684A>T|||||2684|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3885A>T|||||3885|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/2|c.217+51A>T||||||	GT:AD:DP:GQ:PL	0/1:11,8:19:99:204,0,259	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173771	.	T	C	955.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=30.83;SOR=1.402;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1407A>G|||||1407|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1238T>C|||||1238|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2618T>C|||||2618|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3819T>C|||||3819|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/2|c.218-90T>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:72:984,72,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173806	.	A	G	1017.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=32.83;SOR=1.609;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1442T>C|||||1442|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1203A>G|||||1203|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2583A>G|||||2583|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3784A>G|||||3784|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/2|c.218-55A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1046,75,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173843	.	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=29.39;SOR=1.040;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1479T>C|||||1479|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1166A>G|||||1166|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2546A>G|||||2546|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3747A>G|||||3747|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|1/2|c.218-18A>G||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:81:1145,81,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	173875	.	G	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.650;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=51.88;MQ0=10;MQRankSum=-1.686;QD=10.79;ReadPosRankSum=-0.554;SOR=0.617;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|2/3|c.232G>A|p.Gly78Arg|232/654|232/654|78/217||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1511C>T|||||1511|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-1134G>A|||||1134|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2514G>A|||||2514|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3715G>A|||||3715|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,25:53:99:600,0,420	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	174041	.	C	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8212;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-0.761;QD=16.57;ReadPosRankSum=-0.880;SOR=0.976;ANN=G|stop_gained|HIGH|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|2/3|c.398C>G|p.Ser133*|398/654|398/654|133/217||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1677G>C|||||1677|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-968C>G|||||968|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2348C>G|||||2348|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3549C>G|||||3549|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|1|1.00);NMD=(EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|1|1.00)	GT:AD:DP:GQ:PL	0/1:10,14:24:99:426,0,313	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	174101	.	A	G	830.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8212;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=31.95;SOR=0.846;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|2/3|c.458A>G|p.Asn153Ser|458/654|458/654|153/217||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1737T>C|||||1737|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-908A>G|||||908|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2288A>G|||||2288|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3489A>G|||||3489|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:859,63,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	174112	.	C	A	715.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8212;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.82;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|2/3|c.469C>A|p.Arg157Ser|469/654|469/654|157/217||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1748G>T|||||1748|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-897C>A|||||897|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2277C>A|||||2277|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3478C>A|||||3478|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:744,54,0	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	174121	.	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.540;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQ0=0;MQRankSum=-0.712;QD=11.95;ReadPosRankSum=0.105;SOR=0.412;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|2/3|c.478G>A|p.Ala160Thr|478/654|478/654|160/217||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-1757C>T|||||1757|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-888G>A|||||888|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2268G>A|||||2268|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3469G>A|||||3469|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:339,0,322	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	174373	.	G	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=40.90;MQ0=28;MQRankSum=2.164;QD=5.93;ReadPosRankSum=0.277;SOR=1.531;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|3/3|c.622G>T|p.Gly208Cys|622/654|622/654|208/217||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-2009C>A|||||2009|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-636G>T|||||636|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-2016G>T|||||2016|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3217G>T|||||3217|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-4806G>T|||||4806|	GT:AD:DP:GQ:PL	0/1:48,13:61:99:390,0,413	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	174404	.	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;DP=95;Dels=0.00;ExcessHet=3.0103;FS=6.497;HaplotypeScore=2.9914;MLEAC=1;MLEAF=0.500;MQ=31.41;MQ0=53;MQRankSum=-4.572;QD=1.24;ReadPosRankSum=-3.413;SOR=0.342;ANN=G|splice_region_variant&stop_retained_variant|LOW|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding|3/3|c.653A>G|p.Ter218Ter|653/654|653/654|218/217||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-2040T>C|||||2040|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.-605A>G|||||605|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-1985A>G|||||1985|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-3186A>G|||||3186|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-4775A>G|||||4775|	GT:AD:DP:GQ:PL	0/1:30,63:95:99:144,0,816	scaffold6835_cov62	GLEAN	mRNA	173438	174405	0.61	+	.	ID=Soaet10008384
scaffold6835_cov62	175229	.	G	A	522.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=27.51;SOR=0.793;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding|1/1|c.221G>A|p.Gly74Asp|221/240|221/240|74/79||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-2865C>T|||||2865|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.-1160G>A|||||1160|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-2361G>A|||||2361|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-3950G>A|||||3950|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-4681G>A|||||4681|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*824G>A|||||824|	GT:AD:DP:GQ:PL	1/1:0,19:19:39:551,39,0	scaffold6835_cov62	GLEAN	mRNA	175009	175248	0.97	+	.	ID=Soaet10008385
scaffold6835_cov62	176503	.	G	A	773.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.799;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=4;MQRankSum=5.162;QD=24.96;ReadPosRankSum=-0.039;SOR=0.082;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding|1/1|c.115G>A|p.Gly39Ser|115/360|115/360|39/119||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-4139C>T|||||4139|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-1087G>A|||||1087|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-2676G>A|||||2676|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-3407G>A|||||3407|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*2098G>A|||||2098|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*1255G>A|||||1255|	GT:AD:DP:GQ:PL	1/1:7,24:31:57:802,57,0	scaffold6835_cov62	GLEAN	mRNA	176389	176748	0.52	+	.	ID=Soaet10008387
scaffold6835_cov62	176701	.	A	T	487.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.466;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=38.81;MQ0=20;MQRankSum=3.073;QD=12.49;ReadPosRankSum=-1.530;SOR=1.061;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding|1/1|c.313A>T|p.Met105Leu|313/360|313/360|105/119||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_166413_172364|GENE_EXON_scaffold6835_cov62_166413_172364|transcript|Soaet10008383|protein_coding||c.-4337T>A|||||4337|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.-889A>T|||||889|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-2478A>T|||||2478|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-3209A>T|||||3209|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*2296A>T|||||2296|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*1453A>T|||||1453|	GT:AD:DP:GQ:PL	1/1:22,17:39:9:515,9,0	scaffold6835_cov62	GLEAN	mRNA	176389	176748	0.52	+	.	ID=Soaet10008387
scaffold6835_cov62	177702	.	T	G	195.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.76;ReadPosRankSum=-0.812;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding|1/1|c.113T>G|p.Ile38Ser|113/531|113/531|38/176||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-1477T>G|||||1477|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-2208T>G|||||2208|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*3297T>G|||||3297|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*2454T>G|||||2454|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*954T>G|||||954|	GT:AD:DP:GQ:PL	0/1:2,7:9:19:224,0,19	scaffold6835_cov62	GLEAN	mRNA	177590	178120	0.52	+	.	ID=Soaet10008389
scaffold6835_cov62	177784	.	C	T	17.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=0.641;QD=1.11;ReadPosRankSum=-0.539;SOR=1.104;ANN=T|synonymous_variant|LOW|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding|1/1|c.195C>T|p.Pro65Pro|195/531|195/531|65/176||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-1395C>T|||||1395|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-2126C>T|||||2126|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*3379C>T|||||3379|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*2536C>T|||||2536|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*1036C>T|||||1036|	GT:AD:DP:GQ:PL	0/1:13,3:16:46:46,0,385	scaffold6835_cov62	GLEAN	mRNA	177590	178120	0.52	+	.	ID=Soaet10008389
scaffold6835_cov62	177860	.	A	G	464.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=2;QD=27.34;SOR=1.112;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding|1/1|c.271A>G|p.Ile91Val|271/531|271/531|91/176||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-1319A>G|||||1319|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-2050A>G|||||2050|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*3455A>G|||||3455|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*2612A>G|||||2612|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*1112A>G|||||1112|	GT:AD:DP:GQ:PL	1/1:0,17:17:36:493,36,0	scaffold6835_cov62	GLEAN	mRNA	177590	178120	0.52	+	.	ID=Soaet10008389
scaffold6835_cov62	177889	.	A	G	17.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=41.55;MQ0=16;MQRankSum=-2.812;QD=0.45;ReadPosRankSum=-0.699;SOR=2.670;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding|1/1|c.300A>G|p.Pro100Pro|300/531|300/531|100/176||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-1290A>G|||||1290|,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-2021A>G|||||2021|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*3484A>G|||||3484|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*2641A>G|||||2641|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*1141A>G|||||1141|	GT:AD:DP:GQ:PL	0/1:21,19:40:46:46,0,464	scaffold6835_cov62	GLEAN	mRNA	177590	178120	0.52	+	.	ID=Soaet10008389
scaffold6835_cov62	177897	.	T	C	12.05	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.410;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=40.88;MQ0=16;MQRankSum=-3.508;QD=0.32;ReadPosRankSum=-1.022;SOR=3.258;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding|1/1|c.308T>C|p.Leu103Pro|308/531|308/531|103/176||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-1282T>C|||||1282|,C|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-2013T>C|||||2013|,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*3492T>C|||||3492|,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*2649T>C|||||2649|,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*1149T>C|||||1149|	GT:AD:DP:GQ:PL	0/1:18,20:38:40:40,0,490	scaffold6835_cov62	GLEAN	mRNA	177590	178120	0.52	+	.	ID=Soaet10008389
scaffold6835_cov62	178010	.	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;DP=136;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=5.6383;MLEAC=1;MLEAF=0.500;MQ=23.67;MQ0=101;MQRankSum=5.110;QD=4.12;ReadPosRankSum=-1.520;SOR=0.771;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding|1/1|c.421G>A|p.Ala141Thr|421/531|421/531|141/176||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-1169G>A|||||1169|,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-1900G>A|||||1900|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*3605G>A|||||3605|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*2762G>A|||||2762|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*1262G>A|||||1262|	GT:AD:DP:GQ:PL	0/1:114,22:136:85:589,0,85	scaffold6835_cov62	GLEAN	mRNA	177590	178120	0.52	+	.	ID=Soaet10008389
scaffold6835_cov62	178054	.	C	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8275;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=70;MQRankSum=2.834;QD=3.85;ReadPosRankSum=1.523;SOR=0.399;ANN=T|synonymous_variant|LOW|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding|1/1|c.465C>T|p.Phe155Phe|465/531|465/531|155/176||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.-1125C>T|||||1125|,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-1856C>T|||||1856|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*3649C>T|||||3649|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*2806C>T|||||2806|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*1306C>T|||||1306|	GT:AD:DP:GQ:PL	0/1:84,16:101:99:413,0,202	scaffold6835_cov62	GLEAN	mRNA	177590	178120	0.52	+	.	ID=Soaet10008389
scaffold6835_cov62	179285	.	C	T	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=36.38;MQ0=52;MQRankSum=-0.038;QD=6.13;ReadPosRankSum=-0.038;SOR=0.327;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding|1/1|c.107C>T|p.Ser36Leu|107/465|107/465|36/154||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-625C>T|||||625|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*4880C>T|||||4880|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*4037C>T|||||4037|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*2537C>T|||||2537|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*1165C>T|||||1165|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:63,22:85:99:549,0,281	scaffold6835_cov62	GLEAN	mRNA	179179	179643	0.97	+	.	ID=Soaet10008390
scaffold6835_cov62	179329	.	C	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=39.68;MQ0=41;MQRankSum=1.406;QD=3.59;ReadPosRankSum=-0.444;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding|1/1|c.151C>G|p.Gln51Glu|151/465|151/465|51/154||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-581C>G|||||581|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_173438_173654|GENE_EXON_scaffold6835_cov62_173438_173654|transcript|Soaet10008384|protein_coding||c.*4924C>G|||||4924|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*4081C>G|||||4081|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*2581C>G|||||2581|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*1209C>G|||||1209|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:63,13:76:99:301,0,660	scaffold6835_cov62	GLEAN	mRNA	179179	179643	0.97	+	.	ID=Soaet10008390
scaffold6835_cov62	179589	.	G	A	703.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.2690;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=1;MQRankSum=3.744;QD=25.13;ReadPosRankSum=0.670;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding|1/1|c.411G>A|p.Lys137Lys|411/465|411/465|137/154||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding||c.-321G>A|||||321|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*4341G>A|||||4341|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*2841G>A|||||2841|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*1469G>A|||||1469|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,26:29:51:732,51,0	scaffold6835_cov62	GLEAN	mRNA	179179	179643	0.97	+	.	ID=Soaet10008390
scaffold6835_cov62	180012	.	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=1;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.850;SOR=1.555;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding|1/1|c.103G>A|p.Glu35Lys|103/924|103/924|35/307||,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*4764G>A|||||4764|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*3264G>A|||||3264|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*1892G>A|||||1892|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.*369G>A|||||369|	GT:AD:DP:GQ:PL	0/1:12,4:16:88:88,0,308	scaffold6835_cov62	GLEAN	mRNA	179910	180833	0.97	+	.	ID=Soaet10008391
scaffold6835_cov62	180106	.	T	C	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5576;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=63;MQRankSum=-4.150;QD=0.20;ReadPosRankSum=-2.661;SOR=3.767;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding|1/1|c.197T>C|p.Ile66Thr|197/924|197/924|66/307||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_175009_175248|GENE_EXON_scaffold6835_cov62_175009_175248|transcript|Soaet10008385|protein_coding||c.*4858T>C|||||4858|,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*3358T>C|||||3358|,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*1986T>C|||||1986|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.*463T>C|||||463|	GT:AD:DP:GQ:PL	0/1:16,76:93:47:47,0,383	scaffold6835_cov62	GLEAN	mRNA	179910	180833	0.97	+	.	ID=Soaet10008391
scaffold6835_cov62	180255	.	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;DP=235;Dels=0.00;ExcessHet=3.0103;FS=7.213;HaplotypeScore=4.4827;MLEAC=1;MLEAF=0.500;MQ=16.73;MQ0=143;MQRankSum=3.904;QD=0.51;ReadPosRankSum=-1.342;SOR=0.517;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding|1/1|c.346G>A|p.Val116Ile|346/924|346/924|116/307||,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*3507G>A|||||3507|,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*2135G>A|||||2135|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.*612G>A|||||612|	GT:AD:DP:GQ:PL	0/1:227,8:235:99:149,0,864	scaffold6835_cov62	GLEAN	mRNA	179910	180833	0.97	+	.	ID=Soaet10008391
scaffold6835_cov62	180260	.	T	G	1217.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.469;DP=228;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0611;MLEAC=2;MLEAF=1.00;MQ=17.41;MQ0=138;MQRankSum=0.344;QD=5.34;ReadPosRankSum=2.386;SOR=2.268;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding|1/1|c.351T>G|p.Asp117Glu|351/924|351/924|117/307||,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*3512T>G|||||3512|,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*2140T>G|||||2140|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.*617T>G|||||617|	GT:AD:DP:GQ:PL	1/1:3,225:228:99:1246,108,0	scaffold6835_cov62	GLEAN	mRNA	179910	180833	0.97	+	.	ID=Soaet10008391
scaffold6835_cov62	180586	.	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.058;QD=9.94;ReadPosRankSum=0.712;SOR=0.694;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_179910_180833|GENE_EXON_scaffold6835_cov62_179910_180833|transcript|Soaet10008391|protein_coding|1/1|c.677C>T|p.Ser226Phe|677/924|677/924|226/307||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_176389_176748|GENE_EXON_scaffold6835_cov62_176389_176748|transcript|Soaet10008387|protein_coding||c.*3838C>T|||||3838|,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_177590_178120|GENE_EXON_scaffold6835_cov62_177590_178120|transcript|Soaet10008389|protein_coding||c.*2466C>T|||||2466|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_179179_179643|GENE_EXON_scaffold6835_cov62_179179_179643|transcript|Soaet10008390|protein_coding||c.*943C>T|||||943|	GT:AD:DP:GQ:PL	0/1:12,9:21:99:237,0,325	scaffold6835_cov62	GLEAN	mRNA	179910	180833	0.97	+	.	ID=Soaet10008391
scaffold6835_cov62	219088	.	AG	A	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=15;ExcessHet=3.0103;FS=5.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.72;ReadPosRankSum=1.800;SOR=0.916;ANN=A|frameshift_variant|HIGH|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/3|c.13delG|p.Ala5fs|13/669|13/669|5/222||,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1866delC|||||1866|	GT:AD:DP:GQ:PL	0/1:7,8:15:99:318,0,264	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219176	.	T	C	811.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=31.22;SOR=1.697;ANN=C|missense_variant&splice_region_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/3|c.100T>C|p.Tyr34His|100/669|100/669|34/222||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1779A>G|||||1779|	GT:AD:DP:GQ:PL	1/1:0,26:26:60:840,60,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219433	.	A	G	1059.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=30.28;SOR=1.002;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1522T>C|||||1522|,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/2|c.100+257A>G||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1088,78,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219498	.	G	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.545;HaplotypeScore=3.7468;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-0.778;QD=16.11;ReadPosRankSum=-0.467;SOR=0.402;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1457C>T|||||1457|,A|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/2|c.100+322G>A||||||	GT:AD:DP:GQ:PL	0/1:11,15:26:99:447,0,336	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219622	.	C	T	735.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.706;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7224;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=3.521;QD=21.64;ReadPosRankSum=-0.204;SOR=0.446;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1333G>A|||||1333|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/2|c.101-218C>T||||||	GT:AD:DP:GQ:PL	1/1:1,33:34:36:764,36,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219663	.	G	A	1088.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=29.43;SOR=0.984;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1292C>T|||||1292|,A|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/2|c.101-177G>A||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1117,84,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219680	.	A	G	892.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=2.548;QD=28.80;ReadPosRankSum=-0.402;SOR=1.071;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1275T>C|||||1275|,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/2|c.101-160A>G||||||	GT:AD:DP:GQ:PL	1/1:2,29:31:66:921,66,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219734	.	A	G	756.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=32.90;SOR=0.963;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1221T>C|||||1221|,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/2|c.101-106A>G||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:57:785,57,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219780	.	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.356;SOR=0.905;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*1175C>T|||||1175|,A|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|1/2|c.101-60G>A||||||	GT:AD:DP:GQ:PL	0/1:9,12:21:99:337,0,250	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219961	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;DP=26;Dels=0.00;ExcessHet=3.0103;FS=9.432;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=-4.924;QD=0.95;ReadPosRankSum=-3.034;SOR=3.607;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|2/3|c.222G>A|p.Met74Ile|222/669|222/669|74/222||,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*994C>T|||||994|	GT:AD:DP:GQ:PL	0/1:21,5:26:53:53,0,609	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	219972	.	C	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.030;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=44.60;MQ0=1;MQRankSum=2.550;QD=3.38;ReadPosRankSum=1.803;SOR=0.057;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|2/3|c.233C>T|p.Ser78Phe|233/669|233/669|78/222||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*983G>A|||||983|	GT:AD:DP:GQ:PL	0/1:35,6:41:99:167,0,720	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220015	.	A	C	3349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;DP=187;Dels=0.00;ExcessHet=3.0103;FS=76.615;HaplotypeScore=16.3038;MLEAC=1;MLEAF=0.500;MQ=34.19;MQ0=18;MQRankSum=-7.917;QD=18.01;ReadPosRankSum=-0.858;SOR=7.687;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|2/3|c.276A>C|p.Gln92His|276/669|276/669|92/222||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*940T>G|||||940|	GT:AD:DP:GQ:PL	0/1:28,158:187:99:3378,0,386	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220080	.	C	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DP=250;Dels=0.00;ExcessHet=3.0103;FS=21.865;HaplotypeScore=11.9363;MLEAC=1;MLEAF=0.500;MQ=20.12;MQ0=62;MQRankSum=-7.150;QD=4.42;ReadPosRankSum=-1.650;SOR=7.159;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*875G>A|||||875|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|2/2|c.283-26C>T||||||	GT:AD:DP:GQ:PL	0/1:16,232:250:99:1125,0,410	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220151	.	A	G	2805.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.100;DP=245;Dels=0.00;ExcessHet=3.0103;FS=31.643;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=27;MQRankSum=-5.098;QD=11.45;ReadPosRankSum=-1.651;SOR=8.934;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.328A>G|p.Met110Val|328/669|328/669|110/222||,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*804T>C|||||804|	GT:AD:DP:GQ:PL	1/1:9,236:245:30:2834,30,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220154	.	A	G	3579.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.453;DP=250;Dels=0.00;ExcessHet=3.0103;FS=31.962;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=29;MQRankSum=-4.837;QD=14.32;ReadPosRankSum=-2.270;SOR=8.526;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.331A>G|p.Lys111Glu|331/669|331/669|111/222||,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*801T>C|||||801|	GT:AD:DP:GQ:PL	1/1:8,242:250:70:3608,70,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220160	.	A	G	4459.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.840;DP=250;Dels=0.00;ExcessHet=3.0103;FS=26.827;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=26;MQRankSum=-4.979;QD=17.84;ReadPosRankSum=-2.172;SOR=6.694;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.337A>G|p.Ile113Val|337/669|337/669|113/222||,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*795T>C|||||795|	GT:AD:DP:GQ:PL	1/1:8,242:250:99:4488,103,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220191	.	T	C	4989.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.092;DP=250;Dels=0.00;ExcessHet=3.0103;FS=7.429;HaplotypeScore=4.4522;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=24;MQRankSum=-3.432;QD=20.12;ReadPosRankSum=-1.113;SOR=2.964;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.368T>C|p.Met123Thr|368/669|368/669|123/222||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*764A>G|||||764|	GT:AD:DP:GQ:PL	1/1:6,242:250:99:5018,260,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220293	.	T	C	8822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.471;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.7142;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-1.119;QD=28.34;ReadPosRankSum=1.885;SOR=0.777;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.470T>C|p.Val157Ala|470/669|470/669|157/222||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*662A>G|||||662|	GT:AD:DP:GQ:PL	1/1:2,246:250:99:8851,659,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220431	.	A	G	4064.77	.	AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5203;MLEAC=2;MLEAF=1.00;MQ=35.04;MQ0=54;QD=21.85;SOR=3.528;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.608A>G|p.Gln203Arg|608/669|608/669|203/222||,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*524T>C|||||524|	GT:AD:DP:GQ:PL	1/1:0,186:187:99:4093,313,0	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220452	.	A	T	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DP=159;Dels=0.00;ExcessHet=3.0103;FS=36.692;HaplotypeScore=7.4283;MLEAC=1;MLEAF=0.500;MQ=32.35;MQ0=51;MQRankSum=-6.598;QD=15.95;ReadPosRankSum=-1.098;SOR=6.273;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.629A>T|p.Asn210Ile|629/669|629/669|210/222||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*503T>A|||||503|	GT:AD:DP:GQ:PL	0/1:16,143:159:99:2565,0,241	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220454	.	T	C	2485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;DP=157;Dels=0.00;ExcessHet=3.0103;FS=36.287;HaplotypeScore=7.4283;MLEAC=1;MLEAF=0.500;MQ=31.85;MQ0=51;MQRankSum=-6.773;QD=15.83;ReadPosRankSum=-1.378;SOR=6.229;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.631T>C|p.Ser211Pro|631/669|631/669|211/222||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*501A>G|||||501|	GT:AD:DP:GQ:PL	0/1:16,141:157:99:2514,0,207	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	220490	.	T	C	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;DP=125;Dels=0.00;ExcessHet=3.0103;FS=50.820;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=33.22;MQ0=44;MQRankSum=-7.098;QD=11.16;ReadPosRankSum=-6.187;SOR=7.697;ANN=C|stop_lost&splice_region_variant|HIGH|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding|3/3|c.667T>C|p.Ter223Glnext*?|667/669|667/669|223/222||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding||c.*465A>G|||||465|	GT:AD:DP:GQ:PL	0/1:21,104:125:99:1423,0,399	scaffold6835_cov62	GLEAN	mRNA	219077	220492	0.96	+	.	ID=Soaet10008394
scaffold6835_cov62	221228	.	C	T	784.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=1;QD=29.07;SOR=1.220;ANN=T|synonymous_variant|LOW|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|4/4|c.489G>A|p.Leu163Leu|489/762|489/762|163/253||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*736C>T|||||736|	GT:AD:DP:GQ:PL	1/1:1,26:27:57:813,57,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	221515	.	A	C	390.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=27.91;SOR=0.976;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1023A>C|||||1023|,C|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|3/3|c.398-196T>G||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:419,30,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	221530	.	A	C	352.78	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=23.52;SOR=0.818;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1038A>C|||||1038|,C|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|3/3|c.398-211T>G||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:27:381,27,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	221556	.	A	AAT	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=-1.113;QD=13.20;RPA=6,7;RU=AT;ReadPosRankSum=-1.076;SOR=0.693;STR;ANN=AAT|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1064_*1065insAT|||||1065|,AAT|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|3/3|c.397+212_397+213insAT||||||	GT:AD:DP:GQ:PL	0/1:8,6:14:99:222,0,305	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	221773	.	A	T	169.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.27;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|3/4|c.393T>A|p.Phe131Leu|393/762|393/762|131/253||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1281A>T|||||1281|	GT:AD:DP:GQ:PL	1/1:0,7:7:15:198,15,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	221809	.	G	C	138.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SOR=0.941;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|3/4|c.357C>G|p.Ile119Met|357/762|357/762|119/253||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1317G>C|||||1317|	GT:AD:DP:GQ:PL	1/1:0,7:7:12:166,12,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	221977	.	T	C	601.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SOR=1.426;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1485T>C|||||1485|,C|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|2/3|c.338-149A>G||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:45:630,45,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222213	.	A	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DP=19;Dels=0.00;ExcessHet=3.0103;FS=11.311;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=0.555;QD=18.36;ReadPosRankSum=0.338;SOR=1.872;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1721A>T|||||1721|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|2/3|c.337+199T>A||||||	GT:AD:DP:GQ:PL	0/1:7,12:19:99:377,0,203	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222245	.	G	T	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.825;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=0.533;QD=13.35;ReadPosRankSum=0.657;SOR=2.494;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1753G>T|||||1753|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|2/3|c.337+167C>A||||||	GT:AD:DP:GQ:PL	0/1:14,11:25:99:362,0,326	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222467	.	C	CA	937.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.16;RPA=1,2;RU=A;SOR=1.426;STR;ANN=CA|frameshift_variant|HIGH|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|2/4|c.281dupT|p.Met94fs|281/762|281/762|94/253||,CA|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*1975_*1976insA|||||1976|;LOF=(EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:975,69,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222527	.	C	T	1109.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=1;QD=30.83;SOR=1.675;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2035C>T|||||2035|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/3|c.277-55G>A||||||	GT:AD:DP:GQ:PL	1/1:1,35:37:81:1138,81,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222584	.	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=22.20;SOR=3.042;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2092A>G|||||2092|,G|intron_variant|MODIFIER|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/3|c.276+19T>C||||||	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1804,147,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222598	.	T	TG	1010.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=108;ExcessHet=3.0103;FS=50.845;MLEAC=1;MLEAF=0.500;MQ=41.32;MQ0=0;MQRankSum=-8.008;QD=13.48;ReadPosRankSum=-3.079;SOR=6.455;ANN=TG|splice_region_variant&intron_variant|LOW|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/3|c.276+4_276+5insC||||||,TG|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2106_*2107insG|||||2107|	GT:AD:DP:GQ:PL	0/1:41,34:76:99:1048,0,1637	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222599	.	A	C	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;DP=108;Dels=0.00;ExcessHet=3.0103;FS=50.845;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=41.32;MQ0=5;MQRankSum=-8.798;QD=8.89;ReadPosRankSum=-3.181;SOR=7.598;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/3|c.276+4T>G||||||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2107A>C|||||2107|	GT:AD:DP:GQ:PL	0/1:41,66:108:99:979,0,999	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222601	.	T	C	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DP=121;Dels=0.00;ExcessHet=3.0103;FS=57.573;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=39.67;MQ0=7;MQRankSum=-8.655;QD=9.17;ReadPosRankSum=-3.304;SOR=7.743;ANN=C|splice_donor_variant&intron_variant|HIGH|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/3|c.276+2A>G||||||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2109T>C|||||2109|;LOF=(EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|1|1.00)	GT:AD:DP:GQ:PL	0/1:44,77:121:99:1138,0,952	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222654	.	G	A	4654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DP=250;Dels=0.00;ExcessHet=3.0103;FS=21.624;HaplotypeScore=4.1301;MLEAC=1;MLEAF=0.500;MQ=34.69;MQ0=13;MQRankSum=-6.893;QD=18.69;ReadPosRankSum=-3.385;SOR=2.394;ANN=A|synonymous_variant|LOW|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/4|c.225C>T|p.Thr75Thr|225/762|225/762|75/253||,A|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2162G>A|||||2162|	GT:AD:DP:GQ:PL	0/1:27,222:250:99:4683,0,328	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222690	.	T	C	5686.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.452;DP=250;Dels=0.00;ExcessHet=3.0103;FS=4.065;HaplotypeScore=3.4801;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=8;MQRankSum=-5.261;QD=22.84;ReadPosRankSum=-0.371;SOR=0.285;ANN=C|synonymous_variant|LOW|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/4|c.189A>G|p.Leu63Leu|189/762|189/762|63/253||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2198T>C|||||2198|	GT:AD:DP:GQ:PL	1/1:16,233:250:82:5715,82,0	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222792	.	A	G	3804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=224;Dels=0.00;ExcessHet=3.0103;FS=7.804;HaplotypeScore=19.3038;MLEAC=1;MLEAF=0.500;MQ=33.55;MQ0=35;MQRankSum=-5.519;QD=17.14;ReadPosRankSum=3.997;SOR=2.519;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/4|c.87T>C|p.Ile29Ile|87/762|87/762|29/253||,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2300A>G|||||2300|	GT:AD:DP:GQ:PL	0/1:13,209:224:99:3833,0,161	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222854	.	T	C	1789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=151;Dels=0.00;ExcessHet=3.0103;FS=38.665;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=33.67;MQ0=22;MQRankSum=-7.597;QD=11.85;ReadPosRankSum=-4.240;SOR=6.013;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/4|c.25A>G|p.Ile9Val|25/762|25/762|9/253||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2362T>C|||||2362|	GT:AD:DP:GQ:PL	0/1:26,125:151:99:1818,0,527	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222859	.	A	G	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.656;DP=142;Dels=0.00;ExcessHet=3.0103;FS=52.546;HaplotypeScore=7.4860;MLEAC=1;MLEAF=0.500;MQ=33.94;MQ0=16;MQRankSum=-8.215;QD=10.25;ReadPosRankSum=-5.228;SOR=6.722;ANN=G|missense_variant|MODERATE|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/4|c.20T>C|p.Leu7Pro|20/762|20/762|7/253||,G|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2367A>G|||||2367|	GT:AD:DP:GQ:PL	0/1:32,110:142:99:1484,0,653	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222862	.	T	C	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;DP=140;Dels=0.00;ExcessHet=3.0103;FS=59.942;HaplotypeScore=6.5701;MLEAC=1;MLEAF=0.500;MQ=34.34;MQ0=16;MQRankSum=-8.327;QD=10.28;ReadPosRankSum=-5.088;SOR=8.349;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/4|c.17A>G|p.His6Arg|17/762|17/762|6/253||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2370T>C|||||2370|	GT:AD:DP:GQ:PL	0/1:32,108:140:99:1468,0,715	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	222875	.	C	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.308;DP=99;Dels=0.00;ExcessHet=3.0103;FS=36.890;HaplotypeScore=10.3510;MLEAC=1;MLEAF=0.500;MQ=37.65;MQ0=6;MQRankSum=-7.948;QD=6.39;ReadPosRankSum=-7.800;SOR=7.559;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_220955_221319|GENE_EXON_scaffold6835_cov62_220955_221319|transcript|Soaet10008395|protein_coding|1/4|c.4G>A|p.Ala2Thr|4/762|4/762|2/253||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_219077_219176|GENE_EXON_scaffold6835_cov62_219077_219176|transcript|Soaet10008394|protein_coding||c.*2383C>T|||||2383|	GT:AD:DP:GQ:PL	0/1:32,67:99:99:661,0,830	scaffold6835_cov62	GLEAN	mRNA	220955	222878	0.23	-	.	ID=Soaet10008395
scaffold6835_cov62	239357	.	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;DP=247;Dels=0.00;ExcessHet=3.0103;FS=3.583;HaplotypeScore=16.0160;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=75;MQRankSum=5.081;QD=0.54;ReadPosRankSum=-3.633;SOR=0.535;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_239328_239567|GENE_EXON_scaffold6835_cov62_239328_239567|transcript|Soaet10008396|protein_coding|1/1|c.211G>A|p.Val71Ile|211/240|211/240|71/79||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_239888_240006|GENE_EXON_scaffold6835_cov62_239888_240006|transcript|Soaet10008397|protein_coding||c.*531G>A|||||531|	GT:AD:DP:GQ:PL	0/1:230,17:247:99:161,0,2981	scaffold6835_cov62	GLEAN	mRNA	239328	239567	0.97	-	.	ID=Soaet10008396
scaffold6835_cov62	239443	.	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;DP=107;Dels=0.00;ExcessHet=3.0103;FS=8.288;HaplotypeScore=11.6432;MLEAC=1;MLEAF=0.500;MQ=33.62;MQ0=51;MQRankSum=-6.308;QD=1.28;ReadPosRankSum=-5.050;SOR=3.711;ANN=C|missense_variant|MODERATE|EXON_scaffold6835_cov62_239328_239567|GENE_EXON_scaffold6835_cov62_239328_239567|transcript|Soaet10008396|protein_coding|1/1|c.125A>G|p.Lys42Arg|125/240|125/240|42/79||,C|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_239888_240006|GENE_EXON_scaffold6835_cov62_239888_240006|transcript|Soaet10008397|protein_coding||c.*445A>G|||||445|	GT:AD:DP:GQ:PL	0/1:35,72:107:99:165,0,979	scaffold6835_cov62	GLEAN	mRNA	239328	239567	0.97	-	.	ID=Soaet10008396
scaffold6835_cov62	239531	.	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.398;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=1;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.927;SOR=0.425;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_239328_239567|GENE_EXON_scaffold6835_cov62_239328_239567|transcript|Soaet10008396|protein_coding|1/1|c.37G>A|p.Glu13Lys|37/240|37/240|13/79||,T|downstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_239888_240006|GENE_EXON_scaffold6835_cov62_239888_240006|transcript|Soaet10008397|protein_coding||c.*357G>A|||||357|	GT:AD:DP:GQ:PL	0/1:17,15:32:99:359,0,482	scaffold6835_cov62	GLEAN	mRNA	239328	239567	0.97	-	.	ID=Soaet10008396
scaffold6835_cov62	240204	.	A	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.211;SOR=0.859;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_239328_239567|GENE_EXON_scaffold6835_cov62_239328_239567|transcript|Soaet10008396|protein_coding||c.-637T>A|||||637|,T|intron_variant|MODIFIER|EXON_scaffold6835_cov62_239888_240006|GENE_EXON_scaffold6835_cov62_239888_240006|transcript|Soaet10008397|protein_coding|2/3|c.306+26T>A||||||	GT:AD:DP:GQ:PL	0/1:10,11:21:99:320,0,216	scaffold6835_cov62	GLEAN	mRNA	239888	240624	0.47	-	.	ID=Soaet10008397
scaffold6835_cov62	240408	.	C	T	565.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.40;SOR=1.244;ANN=T|missense_variant|MODERATE|EXON_scaffold6835_cov62_239888_240006|GENE_EXON_scaffold6835_cov62_239888_240006|transcript|Soaet10008397|protein_coding|1/4|c.217G>A|p.Glu73Lys|217/438|217/438|73/145||,T|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_239328_239567|GENE_EXON_scaffold6835_cov62_239328_239567|transcript|Soaet10008396|protein_coding||c.-841G>A|||||841|	GT:AD:DP:GQ:PL	1/1:0,16:16:42:594,42,0	scaffold6835_cov62	GLEAN	mRNA	239888	240624	0.47	-	.	ID=Soaet10008397
scaffold6835_cov62	240580	.	A	G	437.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=31.27;SOR=2.303;ANN=G|synonymous_variant|LOW|EXON_scaffold6835_cov62_239888_240006|GENE_EXON_scaffold6835_cov62_239888_240006|transcript|Soaet10008397|protein_coding|1/4|c.45T>C|p.Gly15Gly|45/438|45/438|15/145||,G|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_239328_239567|GENE_EXON_scaffold6835_cov62_239328_239567|transcript|Soaet10008396|protein_coding||c.-1013T>C|||||1013|	GT:AD:DP:GQ:PL	1/1:0,14:14:33:466,33,0	scaffold6835_cov62	GLEAN	mRNA	239888	240624	0.47	-	.	ID=Soaet10008397
scaffold6835_cov62	240605	.	G	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=-0.457;QD=1.20;ReadPosRankSum=-1.461;SOR=0.892;ANN=A|missense_variant|MODERATE|EXON_scaffold6835_cov62_239888_240006|GENE_EXON_scaffold6835_cov62_239888_240006|transcript|Soaet10008397|protein_coding|1/4|c.20C>T|p.Thr7Ile|20/438|20/438|7/145||,A|upstream_gene_variant|MODIFIER|EXON_scaffold6835_cov62_239328_239567|GENE_EXON_scaffold6835_cov62_239328_239567|transcript|Soaet10008396|protein_coding||c.-1038C>T|||||1038|	GT:AD:DP:GQ:PL	0/1:12,2:14:45:45,0,352	scaffold6835_cov62	GLEAN	mRNA	239888	240624	0.47	-	.	ID=Soaet10008397
scaffold8250_cov63	82333	.	G	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=10.0746;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-0.497;QD=0.28;ReadPosRankSum=2.206;SOR=3.556;ANN=T|missense_variant|MODERATE|EXON_scaffold8250_cov63_82228_82695|GENE_EXON_scaffold8250_cov63_82228_82695|transcript|Soaet10009374|protein_coding|1/1|c.106G>T|p.Asp36Tyr|106/468|106/468|36/155||,T|upstream_gene_variant|MODIFIER|EXON_scaffold8250_cov63_77577_78173|GENE_EXON_scaffold8250_cov63_77577_78173|transcript|Soaet10009372|protein_coding||c.-4160C>A|||||4160|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_80166_80327|GENE_EXON_scaffold8250_cov63_80166_80327|transcript|Soaet10009373|protein_coding|3/6|c.415-1082C>A||||||	GT:AD:DP:GQ:PL	0/1:31,6:37:38:38,0,747	scaffold8250_cov63	GLEAN	mRNA	82228	82695	0.97	+	.	ID=Soaet10009374
scaffold8250_cov63	82333	.	G	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=10.0746;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-0.497;QD=0.28;ReadPosRankSum=2.206;SOR=3.556;ANN=T|missense_variant|MODERATE|EXON_scaffold8250_cov63_82228_82695|GENE_EXON_scaffold8250_cov63_82228_82695|transcript|Soaet10009374|protein_coding|1/1|c.106G>T|p.Asp36Tyr|106/468|106/468|36/155||,T|upstream_gene_variant|MODIFIER|EXON_scaffold8250_cov63_77577_78173|GENE_EXON_scaffold8250_cov63_77577_78173|transcript|Soaet10009372|protein_coding||c.-4160C>A|||||4160|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_80166_80327|GENE_EXON_scaffold8250_cov63_80166_80327|transcript|Soaet10009373|protein_coding|3/6|c.415-1082C>A||||||	GT:AD:DP:GQ:PL	0/1:31,6:37:38:38,0,747	scaffold8250_cov63	GLEAN	mRNA	80166	89698	0.39	-	.	ID=Soaet10009373
scaffold8250_cov63	92720	.	A	C	1043.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.70;SOR=0.941;ANN=C|missense_variant|MODERATE|EXON_scaffold8250_cov63_92623_92904|GENE_EXON_scaffold8250_cov63_92623_92904|transcript|Soaet10009376|protein_coding|1/1|c.185T>G|p.Val62Gly|185/282|185/282|62/93||,C|upstream_gene_variant|MODIFIER|EXON_scaffold8250_cov63_80166_80327|GENE_EXON_scaffold8250_cov63_80166_80327|transcript|Soaet10009373|protein_coding||c.-3022T>G|||||3022|,C|downstream_gene_variant|MODIFIER|EXON_scaffold8250_cov63_95544_95642|GENE_EXON_scaffold8250_cov63_95544_95642|transcript|Soaet10009377|protein_coding||c.*2824T>G|||||2824|	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1072,75,0	scaffold8250_cov63	GLEAN	mRNA	92623	92904	0.99	-	.	ID=Soaet10009376
scaffold8250_cov63	167501	.	C	T	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DP=38;Dels=0.00;ExcessHet=3.0103;FS=10.677;HaplotypeScore=5.8312;MLEAC=1;MLEAF=0.500;MQ=55.48;MQ0=0;MQRankSum=-3.155;QD=0.65;ReadPosRankSum=-2.058;SOR=2.801;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1283C>T||||||	GT:AD:DP:GQ:PL	0/1:35,3:38:53:53,0,826	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167505	.	T	C	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.463;HaplotypeScore=3.7895;MLEAC=1;MLEAF=0.500;MQ=55.35;MQ0=0;MQRankSum=-3.094;QD=0.75;ReadPosRankSum=-1.865;SOR=2.804;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1287T>C||||||	GT:AD:DP:GQ:PL	0/1:34,3:37:56:56,0,763	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167508	.	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7895;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-5.768;QD=1.91;ReadPosRankSum=-0.153;SOR=0.420;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1290C>T||||||	GT:AD:DP:GQ:PL	0/1:29,6:35:95:95,0,779	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167510	.	T	A	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.435;HaplotypeScore=5.7472;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-3.860;QD=0.51;ReadPosRankSum=-1.392;SOR=2.804;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1292T>A||||||	GT:AD:DP:GQ:PL	0/1:34,3:37:47:47,0,867	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167526	.	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7040;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-5.768;QD=1.56;ReadPosRankSum=0.985;SOR=0.518;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1308C>T||||||	GT:AD:DP:GQ:PL	0/1:29,6:35:83:83,0,835	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167527	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.914;HaplotypeScore=7.7040;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-3.972;QD=0.61;ReadPosRankSum=-1.360;SOR=1.502;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1309C>T||||||	GT:AD:DP:GQ:PL	0/1:32,4:36:50:50,0,900	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167537	.	G	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.675;HaplotypeScore=4.7053;MLEAC=1;MLEAF=0.500;MQ=56.00;MQ0=0;MQRankSum=-4.972;QD=1.75;ReadPosRankSum=-1.048;SOR=0.774;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1319G>C||||||	GT:AD:DP:GQ:PL	0/1:30,7:37:93:93,0,842	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167543	.	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.519;HaplotypeScore=2.8736;MLEAC=1;MLEAF=0.500;MQ=56.00;MQ0=0;MQRankSum=-5.270;QD=3.02;ReadPosRankSum=-0.665;SOR=0.420;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1325G>A||||||	GT:AD:DP:GQ:PL	0/1:29,8:37:99:140,0,772	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167557	.	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.592;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=-4.714;QD=1.41;ReadPosRankSum=0.815;SOR=0.677;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1339G>A||||||	GT:AD:DP:GQ:PL	0/1:34,7:41:86:86,0,920	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167562	.	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=-6.101;QD=1.51;ReadPosRankSum=1.208;SOR=0.719;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1344G>A||||||	GT:AD:DP:GQ:PL	0/1:32,7:39:87:87,0,902	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167567	.	T	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.676;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=0;MQRankSum=-6.184;QD=1.52;ReadPosRankSum=1.639;SOR=0.754;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1349T>A||||||	GT:AD:DP:GQ:PL	0/1:33,7:40:89:89,0,971	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167569	.	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.676;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=0;MQRankSum=-6.184;QD=1.52;ReadPosRankSum=1.763;SOR=0.754;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1351C>T||||||	GT:AD:DP:GQ:PL	0/1:33,7:40:89:89,0,972	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167575	.	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=-6.018;QD=1.76;ReadPosRankSum=2.016;SOR=0.814;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1357G>A||||||	GT:AD:DP:GQ:PL	0/1:31,7:38:95:95,0,898	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167597	.	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.23;MQ0=0;MQRankSum=-6.177;QD=1.59;ReadPosRankSum=2.064;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1379G>A||||||	GT:AD:DP:GQ:PL	0/1:32,8:40:92:92,0,975	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167615	.	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.18;MQ0=1;MQRankSum=-5.939;QD=1.68;ReadPosRankSum=1.670;SOR=1.163;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1397T>C||||||	GT:AD:DP:GQ:PL	0/1:32,6:38:92:92,0,895	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167619	.	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.230;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=1;MQRankSum=-6.024;QD=1.56;ReadPosRankSum=1.522;SOR=1.184;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1401G>A||||||	GT:AD:DP:GQ:PL	0/1:33,6:39:89:89,0,914	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167622	.	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.323;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=1;MQRankSum=-5.853;QD=1.85;ReadPosRankSum=1.083;SOR=1.144;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1404A>G||||||	GT:AD:DP:GQ:PL	0/1:30,6:37:95:95,0,837	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167625	.	A	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.027;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.18;MQ0=1;MQRankSum=-5.939;QD=1.60;ReadPosRankSum=1.051;SOR=1.133;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1407A>T||||||	GT:AD:DP:GQ:PL	0/1:32,6:38:89:89,0,899	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167641	.	A	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;DP=39;Dels=0.00;ExcessHet=3.0103;FS=7.247;HaplotypeScore=3.8290;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=1;MQRankSum=-6.024;QD=1.56;ReadPosRankSum=0.020;SOR=1.123;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1423A>C||||||	GT:AD:DP:GQ:PL	0/1:33,6:39:89:89,0,921	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167650	.	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=40;Dels=0.00;ExcessHet=3.0103;FS=6.876;HaplotypeScore=1.9972;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=1;MQRankSum=-5.495;QD=2.17;ReadPosRankSum=-0.039;SOR=1.140;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1432T>C||||||	GT:AD:DP:GQ:PL	0/1:34,6:40:99:115,0,923	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167661	.	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DP=36;Dels=0.00;ExcessHet=3.0103;FS=8.074;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=-5.858;QD=1.63;ReadPosRankSum=-1.190;SOR=1.898;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1443C>T||||||	GT:AD:DP:GQ:PL	0/1:31,5:36:87:87,0,926	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	167669	.	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=36;Dels=0.00;ExcessHet=3.0103;FS=8.260;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=-5.858;QD=1.47;ReadPosRankSum=-1.785;SOR=1.898;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+1451T>C||||||	GT:AD:DP:GQ:PL	0/1:31,5:36:81:81,0,1008	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	169949	.	T	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.189;HaplotypeScore=6.7131;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=2;MQRankSum=-6.202;QD=2.49;ReadPosRankSum=-2.098;SOR=1.802;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3731T>C||||||	GT:AD:DP:GQ:PL	0/1:40,11:51:99:155,0,943	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	169967	.	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DP=52;Dels=0.00;ExcessHet=3.0103;FS=6.645;HaplotypeScore=10.9148;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=2;MQRankSum=-6.236;QD=4.09;ReadPosRankSum=-0.413;SOR=1.372;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3749T>C||||||	GT:AD:DP:GQ:PL	0/1:36,16:52:99:241,0,979	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	169969	.	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;DP=55;Dels=0.00;ExcessHet=3.0103;FS=9.250;HaplotypeScore=8.9150;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=2;MQRankSum=-6.559;QD=3.25;ReadPosRankSum=-0.162;SOR=1.696;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3751A>G||||||	GT:AD:DP:GQ:PL	0/1:41,14:55:99:207,0,1064	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	169997	.	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.528;HaplotypeScore=9.8307;MLEAC=1;MLEAF=0.500;MQ=54.69;MQ0=1;MQRankSum=-5.656;QD=3.85;ReadPosRankSum=1.649;SOR=0.965;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3779A>G||||||	GT:AD:DP:GQ:PL	0/1:37,18:55:99:240,0,1047	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	169998	.	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.124;HaplotypeScore=9.8307;MLEAC=1;MLEAF=0.500;MQ=54.69;MQ0=1;MQRankSum=-5.383;QD=4.67;ReadPosRankSum=2.249;SOR=1.067;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3780T>C||||||	GT:AD:DP:GQ:PL	0/1:36,19:55:99:285,0,976	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170005	.	C	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.500;HaplotypeScore=9.8307;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=1;MQRankSum=-5.525;QD=4.58;ReadPosRankSum=1.913;SOR=1.025;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3787C>A||||||	GT:AD:DP:GQ:PL	0/1:36,17:53:99:271,0,992	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170007	.	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.500;HaplotypeScore=9.8309;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=1;MQRankSum=-5.525;QD=4.00;ReadPosRankSum=2.099;SOR=1.025;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3789A>G||||||	GT:AD:DP:GQ:PL	0/1:36,17:53:99:240,0,1025	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170019	.	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.500;HaplotypeScore=14.7463;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=1;MQRankSum=-5.525;QD=3.98;ReadPosRankSum=2.460;SOR=1.025;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3801T>C||||||	GT:AD:DP:GQ:PL	0/1:36,17:53:99:239,0,1045	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170031	.	AATATCAGGAAATC	A	2094.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;DP=51;ExcessHet=3.0103;FS=4.460;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=0;MQRankSum=-4.967;QD=10.29;ReadPosRankSum=1.734;SOR=1.300;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3814_494+3826delATATCAGGAAATC||||||	GT:AD:DP:GQ:PL	0/1:33,14:47:99:2132,0,4904	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170077	.	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.079;HaplotypeScore=13.8305;MLEAC=1;MLEAF=0.500;MQ=54.77;MQ0=0;MQRankSum=-5.377;QD=4.17;ReadPosRankSum=-1.104;SOR=0.885;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3859C>T||||||	GT:AD:DP:GQ:PL	0/1:34,19:53:99:249,0,966	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170093	.	A	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.807;HaplotypeScore=13.6624;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=-5.482;QD=5.51;ReadPosRankSum=-1.708;SOR=1.394;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3875A>C||||||	GT:AD:DP:GQ:PL	0/1:29,18:47:99:287,0,795	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170103	.	A	G	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.118;HaplotypeScore=8.8310;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=0;MQRankSum=-4.089;QD=5.16;ReadPosRankSum=-1.095;SOR=2.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3885A>G||||||	GT:AD:DP:GQ:PL	0/1:27,10:37:99:219,0,699	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170105	.	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.816;HaplotypeScore=6.8312;MLEAC=1;MLEAF=0.500;MQ=57.27;MQ0=0;MQRankSum=-3.771;QD=5.56;ReadPosRankSum=-0.831;SOR=1.847;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3887A>G||||||	GT:AD:DP:GQ:PL	0/1:26,9:35:99:223,0,694	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170107	.	A	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.816;HaplotypeScore=4.8307;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=-4.052;QD=5.42;ReadPosRankSum=-0.680;SOR=1.847;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3889A>G||||||	GT:AD:DP:GQ:PL	0/1:26,9:35:99:218,0,723	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170109	.	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.650;HaplotypeScore=3.9148;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-4.124;QD=4.22;ReadPosRankSum=-0.512;SOR=1.739;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3891G>A||||||	GT:AD:DP:GQ:PL	0/1:27,9:36:99:180,0,780	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170118	.	C	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-4.679;QD=4.76;ReadPosRankSum=0.258;SOR=1.981;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3900C>A||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:99:209,0,799	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170127	.	A	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.812;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-4.454;QD=5.25;ReadPosRankSum=-0.491;SOR=1.847;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3909A>G||||||	GT:AD:DP:GQ:PL	0/1:26,9:35:99:212,0,723	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170159	.	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DP=32;Dels=0.00;ExcessHet=3.0103;FS=9.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-4.677;QD=1.56;ReadPosRankSum=0.627;SOR=3.249;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3941C>T||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:78:78,0,912	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170168	.	C	A	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;DP=32;Dels=0.00;ExcessHet=3.0103;FS=6.236;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-5.498;QD=0.41;ReadPosRankSum=0.097;SOR=2.712;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3950C>A||||||	GT:AD:DP:GQ:PL	0/1:29,3:32:41:41,0,938	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170171	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=32;Dels=0.00;ExcessHet=3.0103;FS=6.236;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-5.498;QD=0.35;ReadPosRankSum=-0.097;SOR=2.712;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3953C>T||||||	GT:AD:DP:GQ:PL	0/1:29,3:32:39:39,0,921	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170179	.	G	A	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.354;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=-5.217;QD=0.89;ReadPosRankSum=-1.291;SOR=2.833;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3961G>A||||||	GT:AD:DP:GQ:PL	0/1:26,3:29:54:54,0,816	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170184	.	A	G	17.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.340;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-5.406;QD=0.58;ReadPosRankSum=-1.304;SOR=2.833;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3966A>G||||||	GT:AD:DP:GQ:PL	0/1:28,3:31:46:46,0,885	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	170192	.	G	C	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=-5.588;QD=0.48;ReadPosRankSum=-1.757;SOR=2.599;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+3974G>C||||||	GT:AD:DP:GQ:PL	0/1:30,3:33:44:44,0,906	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171401	.	T	C	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;DP=30;Dels=0.00;ExcessHet=3.0103;FS=10.017;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=57.94;MQ0=0;MQRankSum=-5.312;QD=0.50;ReadPosRankSum=-2.044;SOR=2.803;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5183T>C||||||	GT:AD:DP:GQ:PL	0/1:27,3:30:43:43,0,674	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171426	.	A	T	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=28;Dels=0.00;ExcessHet=3.0103;FS=11.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-5.120;QD=0.53;ReadPosRankSum=-0.856;SOR=2.794;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5208A>T||||||	GT:AD:DP:GQ:PL	0/1:25,3:28:43:43,0,699	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171429	.	A	C	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DP=28;Dels=0.00;ExcessHet=3.0103;FS=11.729;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-5.120;QD=0.53;ReadPosRankSum=-0.745;SOR=2.794;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5211A>C||||||	GT:AD:DP:GQ:PL	0/1:25,3:28:43:43,0,710	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171439	.	A	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=0;MQRankSum=-5.225;QD=1.34;ReadPosRankSum=-1.158;SOR=0.774;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5221A>T||||||	GT:AD:DP:GQ:PL	0/1:24,5:29:67:67,0,650	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171441	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=0;MQRankSum=-5.225;QD=1.47;ReadPosRankSum=-0.984;SOR=0.840;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5223G>A||||||	GT:AD:DP:GQ:PL	0/1:24,5:29:71:71,0,619	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171460	.	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-5.321;QD=1.23;ReadPosRankSum=1.143;SOR=0.971;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5242G>A||||||	GT:AD:DP:GQ:PL	0/1:25,5:30:65:65,0,668	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171465	.	G	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-5.321;QD=1.19;ReadPosRankSum=1.421;SOR=0.929;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5247G>T||||||	GT:AD:DP:GQ:PL	0/1:25,5:30:64:64,0,689	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171471	.	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-5.321;QD=1.23;ReadPosRankSum=1.783;SOR=0.929;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5253C>T||||||	GT:AD:DP:GQ:PL	0/1:25,5:30:65:65,0,682	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171472	.	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-5.321;QD=1.33;ReadPosRankSum=1.672;SOR=0.929;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5254A>G||||||	GT:AD:DP:GQ:PL	0/1:25,5:30:68:68,0,667	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171476	.	C	T	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=-5.127;QD=0.74;ReadPosRankSum=1.441;SOR=0.922;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5258C>T||||||	GT:AD:DP:GQ:PL	0/1:23,5:28:49:49,0,633	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171502	.	C	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.99;MQ0=0;MQRankSum=-5.027;QD=1.47;ReadPosRankSum=1.782;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5284C>A||||||	GT:AD:DP:GQ:PL	0/1:22,5:27:68:68,0,644	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171503	.	T	C	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=0;MQRankSum=-4.925;QD=0.91;ReadPosRankSum=1.693;SOR=0.962;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5285T>C||||||	GT:AD:DP:GQ:PL	0/1:21,5:26:52:52,0,605	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171504	.	C	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=0;MQRankSum=-4.925;QD=1.64;ReadPosRankSum=1.693;SOR=0.962;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5286C>A||||||	GT:AD:DP:GQ:PL	0/1:21,5:26:71:71,0,631	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171506	.	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=0;MQRankSum=-4.925;QD=1.64;ReadPosRankSum=1.596;SOR=0.962;ANN=G|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5288A>G||||||	GT:AD:DP:GQ:PL	0/1:21,5:26:71:71,0,603	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171526	.	G	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.05;MQ0=0;MQRankSum=-4.608;QD=1.86;ReadPosRankSum=1.055;SOR=1.518;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5308G>T||||||	GT:AD:DP:GQ:PL	0/1:19,4:23:71:71,0,563	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171533	.	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=-4.496;QD=2.03;ReadPosRankSum=0.511;SOR=1.492;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5315G>A||||||	GT:AD:DP:GQ:PL	0/1:18,4:22:73:73,0,539	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171542	.	T	A	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=21;Dels=0.00;ExcessHet=3.0103;FS=10.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=-4.378;QD=0.99;ReadPosRankSum=0.956;SOR=2.800;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5324T>A||||||	GT:AD:DP:GQ:PL	0/1:18,3:21:49:49,0,598	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171555	.	A	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;DP=18;Dels=0.00;ExcessHet=3.0103;FS=12.884;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-4.017;QD=1.82;ReadPosRankSum=0.000;SOR=2.783;ANN=T|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5337A>T||||||	GT:AD:DP:GQ:PL	0/1:15,3:18:61:61,0,446	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	171568	.	A	C	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;DP=18;Dels=0.00;ExcessHet=3.0103;FS=8.625;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-3.994;QD=0.83;ReadPosRankSum=-0.211;SOR=2.225;ANN=C|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.494+5350A>C||||||	GT:AD:DP:GQ:PL	0/1:16,2:18:43:43,0,431	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold8250_cov63	177128	.	AG	A	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DP=21;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.37;RPA=2,1;RU=G;ReadPosRankSum=-0.870;SOR=0.991;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold8250_cov63_165725_166218|GENE_EXON_scaffold8250_cov63_165725_166218|transcript|Soaet10009379|protein_coding|1/1|c.495-2192delG||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:276,0,489	scaffold8250_cov63	GLEAN	mRNA	165725	179732	0.79	+	.	ID=Soaet10009379
scaffold10016_cov64	69563	.	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;DP=17;Dels=0.00;ExcessHet=3.0103;FS=9.874;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.30;MQ0=0;MQRankSum=-3.884;QD=4.75;ReadPosRankSum=-1.995;SOR=3.249;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-29A>G||||||	GT:AD:DP:GQ:PL	0/1:13,4:17:99:109,0,377	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69578	.	C	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.167;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.73;MQ0=0;MQRankSum=-3.500;QD=7.71;ReadPosRankSum=-1.793;SOR=2.258;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-44G>A||||||	GT:AD:DP:GQ:PL	0/1:12,6:18:99:167,0,319	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69582	.	G	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.775;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.97;MQ0=0;MQRankSum=-3.623;QD=6.25;ReadPosRankSum=-1.279;SOR=2.066;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-48C>A||||||	GT:AD:DP:GQ:PL	0/1:13,6:19:99:147,0,398	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69588	.	T	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=0;MQRankSum=-3.103;QD=6.32;ReadPosRankSum=-1.600;SOR=1.104;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-54A>T||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:161,0,341	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69605	.	A	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-3.208;QD=6.63;ReadPosRankSum=0.240;SOR=1.049;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-71T>G||||||	GT:AD:DP:GQ:PL	0/1:14,8:22:99:174,0,346	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69655	.	G	C	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.235;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=0;MQRankSum=-2.272;QD=0.45;ReadPosRankSum=-2.287;SOR=1.981;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-121C>G||||||	GT:AD:DP:GQ:PL	0/1:28,5:33:43:43,0,613	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69750	.	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.3876;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=1;MQRankSum=-1.818;QD=1.65;ReadPosRankSum=-1.611;SOR=0.549;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-216C>T||||||	GT:AD:DP:GQ:PL	0/1:28,10:38:91:91,0,631	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69756	.	G	A	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.588;HaplotypeScore=19.2057;MLEAC=1;MLEAF=0.500;MQ=46.34;MQ0=1;MQRankSum=-2.450;QD=0.35;ReadPosRankSum=-0.401;SOR=0.352;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-222C>T||||||	GT:AD:DP:GQ:PL	0/1:32,8:40:42:42,0,740	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69757	.	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;DP=40;Dels=0.00;ExcessHet=3.0103;FS=7.713;HaplotypeScore=19.2057;MLEAC=1;MLEAF=0.500;MQ=46.34;MQ0=1;MQRankSum=-3.011;QD=5.54;ReadPosRankSum=3.344;SOR=2.147;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-223G>A||||||	GT:AD:DP:GQ:PL	0/1:26,14:40:99:250,0,581	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69776	.	G	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;DP=32;Dels=0.00;ExcessHet=3.0103;FS=9.702;HaplotypeScore=10.6545;MLEAC=1;MLEAF=0.500;MQ=43.71;MQ0=1;MQRankSum=-2.167;QD=5.71;ReadPosRankSum=1.612;SOR=2.469;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-242C>A||||||	GT:AD:DP:GQ:PL	0/1:20,12:32:99:211,0,466	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69780	.	T	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.741;HaplotypeScore=12.4457;MLEAC=1;MLEAF=0.500;MQ=44.54;MQ0=1;MQRankSum=-4.893;QD=6.77;ReadPosRankSum=0.707;SOR=2.049;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-246A>T||||||	GT:AD:DP:GQ:PL	0/1:14,17:32:99:238,0,371	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69852	.	C	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4930;MLEAC=1;MLEAF=0.500;MQ=51.54;MQ0=1;MQRankSum=-4.222;QD=3.37;ReadPosRankSum=-1.361;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-318G>C||||||	GT:AD:DP:GQ:PL	0/1:14,7:21:99:99,0,362	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69880	.	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7027;MLEAC=1;MLEAF=0.500;MQ=50.76;MQ0=1;MQRankSum=-4.420;QD=4.18;ReadPosRankSum=-0.528;SOR=0.512;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-346A>G||||||	GT:AD:DP:GQ:PL	0/1:18,9:27:99:141,0,413	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69907	.	C	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=52.30;MQ0=2;MQRankSum=-1.649;QD=1.15;ReadPosRankSum=-0.809;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-373G>T||||||	GT:AD:DP:GQ:PL	0/1:24,7:31:64:64,0,568	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69927	.	C	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DP=37;Dels=0.00;ExcessHet=3.0103;FS=7.547;HaplotypeScore=11.2387;MLEAC=1;MLEAF=0.500;MQ=51.27;MQ0=2;MQRankSum=-4.700;QD=7.29;ReadPosRankSum=-0.099;SOR=1.518;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-393G>C||||||	GT:AD:DP:GQ:PL	0/1:19,18:37:99:298,0,481	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69931	.	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.0704;MLEAC=1;MLEAF=0.500;MQ=51.41;MQ0=2;MQRankSum=-1.836;QD=2.43;ReadPosRankSum=0.114;SOR=0.553;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-397C>T||||||	GT:AD:DP:GQ:PL	0/1:25,9:34:99:111,0,630	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69963	.	A	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.480;HaplotypeScore=4.7008;MLEAC=1;MLEAF=0.500;MQ=49.07;MQ0=2;MQRankSum=-2.355;QD=3.28;ReadPosRankSum=-2.156;SOR=0.997;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-429T>A||||||	GT:AD:DP:GQ:PL	0/1:28,10:38:99:153,0,635	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69988	.	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=49.65;MQ0=1;MQRankSum=-0.623;QD=1.79;ReadPosRankSum=-0.322;SOR=0.909;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-454C>T||||||	GT:AD:DP:GQ:PL	0/1:29,11:40:99:100,0,733	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	69999	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=49.02;MQ0=2;MQRankSum=-0.524;QD=1.53;ReadPosRankSum=0.418;SOR=1.027;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-465G>A||||||	GT:AD:DP:GQ:PL	0/1:31,10:41:91:91,0,747	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70024	.	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.35;MQ0=2;MQRankSum=-2.555;QD=3.95;ReadPosRankSum=2.142;SOR=0.634;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-490C>T||||||	GT:AD:DP:GQ:PL	0/1:33,10:43:99:198,0,735	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70050	.	A	G	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=47.19;MQ0=1;MQRankSum=-0.437;QD=0.77;ReadPosRankSum=0.428;SOR=1.564;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-516T>C||||||	GT:AD:DP:GQ:PL	0/1:30,5:35:55:55,0,697	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70070	.	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9131;MLEAC=1;MLEAF=0.500;MQ=46.98;MQ0=1;MQRankSum=-2.198;QD=7.45;ReadPosRankSum=-1.304;SOR=0.673;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-536T>C||||||	GT:AD:DP:GQ:PL	0/1:15,11:26:99:222,0,432	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70105	.	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.500;MQ=49.22;MQ0=1;MQRankSum=-4.239;QD=9.34;ReadPosRankSum=-0.657;SOR=0.561;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-571C>T||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:243,0,325	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70116	.	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9329;MLEAC=1;MLEAF=0.500;MQ=49.23;MQ0=1;MQRankSum=-3.757;QD=5.69;ReadPosRankSum=0.296;SOR=0.754;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-582G>A||||||	GT:AD:DP:GQ:PL	0/1:13,7:22:99:142,0,380	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70175	.	A	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=50.69;MQ0=0;MQRankSum=-3.224;QD=4.98;ReadPosRankSum=-1.697;SOR=0.760;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-641T>A||||||	GT:AD:DP:GQ:PL	0/1:7,5:12:88:88,0,192	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70185	.	C	G	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.71;MQ0=0;MQRankSum=-2.638;QD=1.39;ReadPosRankSum=-1.834;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-651G>C||||||	GT:AD:DP:GQ:PL	0/1:7,3:10:42:42,0,195	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70249	.	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.32;MQ0=0;MQRankSum=-3.744;QD=2.74;ReadPosRankSum=0.486;SOR=1.518;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-715T>C||||||	GT:AD:DP:GQ:PL	0/1:12,4:16:72:72,0,386	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70253	.	G	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.32;MQ0=0;MQRankSum=-3.744;QD=2.74;ReadPosRankSum=0.547;SOR=1.518;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-719C>G||||||	GT:AD:DP:GQ:PL	0/1:12,4:16:72:72,0,388	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70257	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.32;MQ0=0;MQRankSum=-3.744;QD=2.36;ReadPosRankSum=0.607;SOR=1.518;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-723G>A||||||	GT:AD:DP:GQ:PL	0/1:12,4:16:66:66,0,382	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70273	.	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;DP=19;Dels=0.00;ExcessHet=3.0103;FS=8.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.86;MQ0=0;MQRankSum=-4.052;QD=7.67;ReadPosRankSum=0.424;SOR=2.550;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-739A>G||||||	GT:AD:DP:GQ:PL	0/1:12,7:19:99:174,0,405	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70321	.	A	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7252;MLEAC=1;MLEAF=0.500;MQ=51.61;MQ0=0;MQRankSum=-4.678;QD=10.68;ReadPosRankSum=-0.721;SOR=0.829;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-787T>C||||||	GT:AD:DP:GQ:PL	0/1:14,12:28:99:306,0,436	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70380	.	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6322;MLEAC=1;MLEAF=0.500;MQ=49.61;MQ0=0;MQRankSum=-4.746;QD=9.51;ReadPosRankSum=0.630;SOR=0.507;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-846C>T||||||	GT:AD:DP:GQ:PL	0/1:16,19:35:99:361,0,495	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70385	.	A	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=5.6322;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=0;MQRankSum=-3.802;QD=7.79;ReadPosRankSum=0.347;SOR=0.437;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-851T>A||||||	GT:AD:DP:GQ:PL	0/1:18,17:36:99:301,0,571	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70428	.	T	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.372;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.86;MQ0=0;MQRankSum=-4.715;QD=9.71;ReadPosRankSum=0.161;SOR=0.275;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-894A>T||||||	GT:AD:DP:GQ:PL	0/1:13,15:28:99:300,0,373	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70436	.	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.162;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=-4.273;QD=5.08;ReadPosRankSum=2.028;SOR=0.991;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-902C>T||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:135,0,403	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70438	.	A	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=-4.273;QD=7.32;ReadPosRankSum=2.102;SOR=0.991;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-904T>A||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:182,0,369	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70439	.	C	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=-4.273;QD=7.18;ReadPosRankSum=2.028;SOR=0.991;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-905G>T||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:179,0,402	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70442	.	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.415;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.06;MQ0=0;MQRankSum=-4.142;QD=7.54;ReadPosRankSum=1.775;SOR=0.939;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-908C>T||||||	GT:AD:DP:GQ:PL	0/1:12,8:20:99:179,0,360	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70444	.	C	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=-4.273;QD=7.23;ReadPosRankSum=2.028;SOR=0.991;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-910G>C||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:180,0,369	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70446	.	G	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=-4.273;QD=6.99;ReadPosRankSum=2.065;SOR=0.991;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-912C>G||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:175,0,319	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70451	.	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=50.59;MQ0=0;MQRankSum=-4.224;QD=8.23;ReadPosRankSum=1.173;SOR=1.288;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-917G>A||||||	GT:AD:DP:GQ:PL	0/1:12,9:21:99:201,0,355	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70457	.	G	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.963;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=50.12;MQ0=0;MQRankSum=-4.426;QD=9.12;ReadPosRankSum=0.869;SOR=1.561;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-923C>G||||||	GT:AD:DP:GQ:PL	0/1:13,10:23:99:238,0,359	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70496	.	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-4.464;QD=3.76;ReadPosRankSum=0.591;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-962A>G||||||	GT:AD:DP:GQ:PL	0/1:16,6:22:99:111,0,531	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70501	.	C	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.19;MQ0=0;MQRankSum=-4.690;QD=3.20;ReadPosRankSum=0.800;SOR=0.804;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-967G>C||||||	GT:AD:DP:GQ:PL	0/1:18,6:24:99:105,0,532	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70504	.	C	T	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.92;MQ0=0;MQRankSum=-4.579;QD=0.65;ReadPosRankSum=0.560;SOR=0.665;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-970G>A||||||	GT:AD:DP:GQ:PL	0/1:17,6:23:43:43,0,516	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70508	.	T	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-4.464;QD=2.13;ReadPosRankSum=0.074;SOR=0.754;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-974A>C||||||	GT:AD:DP:GQ:PL	0/1:16,6:22:75:75,0,536	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70509	.	C	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-4.464;QD=3.26;ReadPosRankSum=-0.037;SOR=0.754;ANN=G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-975G>C||||||	GT:AD:DP:GQ:PL	0/1:16,6:22:99:100,0,523	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70514	.	A	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.105;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=52.90;MQ0=0;MQRankSum=-4.464;QD=4.17;ReadPosRankSum=-0.443;SOR=1.536;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-980T>A||||||	GT:AD:DP:GQ:PL	0/1:16,6:23:99:120,0,403	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70530	.	G	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=0;MQRankSum=-4.247;QD=3.34;ReadPosRankSum=0.393;SOR=1.402;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-996C>G||||||	GT:AD:DP:GQ:PL	0/1:15,5:20:95:95,0,501	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70532	.	G	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=0;MQRankSum=-4.247;QD=3.44;ReadPosRankSum=0.524;SOR=1.402;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-998C>A||||||	GT:AD:DP:GQ:PL	0/1:15,5:20:97:97,0,464	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70543	.	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.927;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-4.136;QD=3.57;ReadPosRankSum=0.851;SOR=2.584;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-1009A>G||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:96:96,0,474	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70558	.	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-4.136;QD=3.36;ReadPosRankSum=-0.250;SOR=3.033;ANN=C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-1024A>G||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:92:92,0,527	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70559	.	G	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-4.136;QD=3.25;ReadPosRankSum=-0.300;SOR=3.033;ANN=T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-1025C>A||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:90:90,0,518	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	70577	.	C	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-4.136;QD=2.67;ReadPosRankSum=-0.100;SOR=3.033;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_69331_69534|GENE_EXON_scaffold10016_cov64_69331_69534|transcript|Soaet10008780|protein_coding|3/3|c.466-1043G>T||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:79:79,0,562	scaffold10016_cov64	GLEAN	mRNA	69331	72884	0.74	-	.	ID=Soaet10008780
scaffold10016_cov64	114431	.	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.821;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_113326_113366|GENE_EXON_scaffold10016_cov64_113326_113366|transcript|Soaet10008781|protein_coding|1/2|c.36+225C>T||||||	GT:AD:DP:GQ:PL	0/1:14,8:22:99:216,0,308	scaffold10016_cov64	GLEAN	mRNA	113326	114691	0.44	-	.	ID=Soaet10008781
scaffold10016_cov64	122367	.	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.545;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.169;SOR=1.106;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding||c.-4176C>T|||||4176|,T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_121795_122031|GENE_EXON_scaffold10016_cov64_121795_122031|transcript|Soaet10008782|protein_coding|1/4|c.238-53C>T||||||	GT:AD:DP:GQ:PL	0/1:15,11:26:99:300,0,412	scaffold10016_cov64	GLEAN	mRNA	121795	124398	0.78	+	.	ID=Soaet10008782
scaffold10016_cov64	123592	.	A	AT	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=0.000;QD=13.48;RPA=11,12;RU=T;ReadPosRankSum=1.399;SOR=1.085;STR;ANN=AT|upstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding||c.-2951_-2950insT|||||2950|,AT|intron_variant|MODIFIER|EXON_scaffold10016_cov64_121795_122031|GENE_EXON_scaffold10016_cov64_121795_122031|transcript|Soaet10008782|protein_coding|2/4|c.602-28_602-27insT||||||	GT:AD:DP:GQ:PL	0/1:2,10:13:21:199,0,21	scaffold10016_cov64	GLEAN	mRNA	121795	124398	0.78	+	.	ID=Soaet10008782
scaffold10016_cov64	123954	.	T	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.099;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.35;ReadPosRankSum=0.904;SOR=1.219;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding||c.-2589T>C|||||2589|,C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_121795_122031|GENE_EXON_scaffold10016_cov64_121795_122031|transcript|Soaet10008782|protein_coding|3/4|c.673-97T>C||||||	GT:AD:DP:GQ:PL	0/1:8,17:25:99:537,0,154	scaffold10016_cov64	GLEAN	mRNA	121795	124398	0.78	+	.	ID=Soaet10008782
scaffold10016_cov64	127714	.	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.659;SOR=0.941;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_121795_122031|GENE_EXON_scaffold10016_cov64_121795_122031|transcript|Soaet10008782|protein_coding||c.*3316G>A|||||3316|,A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding|1/8|c.296+876G>A||||||	GT:AD:DP:GQ:PL	0/1:9,8:17:99:209,0,251	scaffold10016_cov64	GLEAN	mRNA	126543	134011	0.49	+	.	ID=Soaet10008783
scaffold10016_cov64	127978	.	T	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-0.039;SOR=0.804;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_121795_122031|GENE_EXON_scaffold10016_cov64_121795_122031|transcript|Soaet10008782|protein_coding||c.*3580T>A|||||3580|,A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding|1/8|c.296+1140T>A||||||	GT:AD:DP:GQ:PL	0/1:20,12:32:99:365,0,553	scaffold10016_cov64	GLEAN	mRNA	126543	134011	0.49	+	.	ID=Soaet10008783
scaffold10016_cov64	129230	.	T	C	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.90;ReadPosRankSum=0.753;SOR=1.931;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_121795_122031|GENE_EXON_scaffold10016_cov64_121795_122031|transcript|Soaet10008782|protein_coding||c.*4832T>C|||||4832|,C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding|1/8|c.297-199T>C||||||	GT:AD:DP:GQ:PL	0/1:10,22:32:99:665,0,264	scaffold10016_cov64	GLEAN	mRNA	126543	134011	0.49	+	.	ID=Soaet10008783
scaffold10016_cov64	129252	.	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.16;ReadPosRankSum=2.290;SOR=1.002;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_121795_122031|GENE_EXON_scaffold10016_cov64_121795_122031|transcript|Soaet10008782|protein_coding||c.*4854T>C|||||4854|,C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding|1/8|c.297-177T>C||||||	GT:AD:DP:GQ:PL	0/1:13,23:36:99:646,0,318	scaffold10016_cov64	GLEAN	mRNA	126543	134011	0.49	+	.	ID=Soaet10008783
scaffold10016_cov64	131808	.	A	G	614.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.27;SOR=1.828;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_135230_135609|GENE_EXON_scaffold10016_cov64_135230_135609|transcript|Soaet10008784|protein_coding||c.*3422T>C|||||3422|,G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding|4/8|c.717+82A>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:45:643,45,0	scaffold10016_cov64	GLEAN	mRNA	126543	134011	0.49	+	.	ID=Soaet10008783
scaffold10016_cov64	132877	.	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=4.6632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-1.042;SOR=1.501;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_135230_135609|GENE_EXON_scaffold10016_cov64_135230_135609|transcript|Soaet10008784|protein_coding||c.*2353G>A|||||2353|,T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding|6/8|c.1055-58C>T||||||	GT:AD:DP:GQ:PL	0/1:16,8:24:99:193,0,534	scaffold10016_cov64	GLEAN	mRNA	126543	134011	0.49	+	.	ID=Soaet10008783
scaffold10016_cov64	135702	.	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.92;ReadPosRankSum=1.848;SOR=0.693;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_126543_126838|GENE_EXON_scaffold10016_cov64_126543_126838|transcript|Soaet10008783|protein_coding||c.*1691C>T|||||1691|,T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_135230_135609|GENE_EXON_scaffold10016_cov64_135230_135609|transcript|Soaet10008784|protein_coding|3/3|c.206-93G>A||||||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:219,0,253	scaffold10016_cov64	GLEAN	mRNA	135230	137665	0.36	-	.	ID=Soaet10008784
scaffold10016_cov64	213879	.	G	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=0;MQRankSum=-2.531;QD=1.30;ReadPosRankSum=-1.386;SOR=1.022;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_207045_207920|GENE_EXON_scaffold10016_cov64_207045_207920|transcript|Soaet10008788|protein_coding||c.-4588C>T|||||4588|,A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_210610_210765|GENE_EXON_scaffold10016_cov64_210610_210765|transcript|Soaet10008789|protein_coding|2/7|c.388-742C>T||||||	GT:AD:DP:GQ:PL	0/1:11,2:13:45:45,0,344	scaffold10016_cov64	GLEAN	mRNA	210610	215566	0.91	-	.	ID=Soaet10008789
scaffold10016_cov64	213898	.	C	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.933;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.32;MQ0=0;MQRankSum=-3.111;QD=3.55;ReadPosRankSum=-0.875;SOR=2.093;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_207045_207920|GENE_EXON_scaffold10016_cov64_207045_207920|transcript|Soaet10008788|protein_coding||c.-4607G>T|||||4607|,A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_210610_210765|GENE_EXON_scaffold10016_cov64_210610_210765|transcript|Soaet10008789|protein_coding|2/7|c.388-761G>T||||||	GT:AD:DP:GQ:PL	0/1:13,3:16:85:85,0,427	scaffold10016_cov64	GLEAN	mRNA	210610	215566	0.91	-	.	ID=Soaet10008789
scaffold10016_cov64	213944	.	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQ0=0;MQRankSum=-3.046;QD=2.17;ReadPosRankSum=1.412;SOR=0.473;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_207045_207920|GENE_EXON_scaffold10016_cov64_207045_207920|transcript|Soaet10008788|protein_coding||c.-4653G>A|||||4653|,T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_210610_210765|GENE_EXON_scaffold10016_cov64_210610_210765|transcript|Soaet10008789|protein_coding|2/7|c.388-807G>A||||||	GT:AD:DP:GQ:PL	0/1:17,5:22:76:76,0,472	scaffold10016_cov64	GLEAN	mRNA	210610	215566	0.91	-	.	ID=Soaet10008789
scaffold10016_cov64	213993	.	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.78;MQ0=2;MQRankSum=-3.432;QD=1.82;ReadPosRankSum=0.846;SOR=0.610;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_207045_207920|GENE_EXON_scaffold10016_cov64_207045_207920|transcript|Soaet10008788|protein_coding||c.-4702T>C|||||4702|,G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_210610_210765|GENE_EXON_scaffold10016_cov64_210610_210765|transcript|Soaet10008789|protein_coding|2/7|c.388-856T>C||||||	GT:AD:DP:GQ:PL	0/1:21,8:29:81:81,0,549	scaffold10016_cov64	GLEAN	mRNA	210610	215566	0.91	-	.	ID=Soaet10008789
scaffold10016_cov64	248630	.	G	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.969;HaplotypeScore=3.9894;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=0.653;QD=0.48;ReadPosRankSum=-0.109;SOR=1.845;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_245851_246321|GENE_EXON_scaffold10016_cov64_245851_246321|transcript|Soaet10008793|protein_coding||c.*2309G>T|||||2309|,T|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_252532_252545|GENE_EXON_scaffold10016_cov64_252532_252545|transcript|Soaet10008795|protein_coding||c.*3902C>A|||||3902|,T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_247699_248413|GENE_EXON_scaffold10016_cov64_247699_248413|transcript|Soaet10008794|protein_coding|1/1|c.715+217G>T||||||	GT:AD:DP:GQ:PL	0/1:21,2:23:39:39,0,506	scaffold10016_cov64	GLEAN	mRNA	247699	249357	1.00	+	.	ID=Soaet10008794
scaffold10016_cov64	248822	.	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.535;HaplotypeScore=7.1998;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=3;MQRankSum=0.023;QD=3.18;ReadPosRankSum=-0.453;SOR=1.096;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_245851_246321|GENE_EXON_scaffold10016_cov64_245851_246321|transcript|Soaet10008793|protein_coding||c.*2501G>A|||||2501|,A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_252532_252545|GENE_EXON_scaffold10016_cov64_252532_252545|transcript|Soaet10008795|protein_coding||c.*3710C>T|||||3710|,A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_247699_248413|GENE_EXON_scaffold10016_cov64_247699_248413|transcript|Soaet10008794|protein_coding|1/1|c.716-300G>A||||||	GT:AD:DP:GQ:PL	0/1:34,8:42:99:162,0,774	scaffold10016_cov64	GLEAN	mRNA	247699	249357	1.00	+	.	ID=Soaet10008794
scaffold10016_cov64	248907	.	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=1;MQRankSum=0.000;QD=10.64;ReadPosRankSum=0.085;SOR=1.179;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_245851_246321|GENE_EXON_scaffold10016_cov64_245851_246321|transcript|Soaet10008793|protein_coding||c.*2586G>A|||||2586|,A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_252532_252545|GENE_EXON_scaffold10016_cov64_252532_252545|transcript|Soaet10008795|protein_coding||c.*3625C>T|||||3625|,A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_247699_248413|GENE_EXON_scaffold10016_cov64_247699_248413|transcript|Soaet10008794|protein_coding|1/1|c.716-215G>A||||||	GT:AD:DP:GQ:PL	0/1:12,8:20:99:241,0,333	scaffold10016_cov64	GLEAN	mRNA	247699	249357	1.00	+	.	ID=Soaet10008794
scaffold10016_cov64	248921	.	A	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.546;SOR=0.859;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_245851_246321|GENE_EXON_scaffold10016_cov64_245851_246321|transcript|Soaet10008793|protein_coding||c.*2600A>T|||||2600|,T|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_252532_252545|GENE_EXON_scaffold10016_cov64_252532_252545|transcript|Soaet10008795|protein_coding||c.*3611T>A|||||3611|,T|intron_variant|MODIFIER|EXON_scaffold10016_cov64_247699_248413|GENE_EXON_scaffold10016_cov64_247699_248413|transcript|Soaet10008794|protein_coding|1/1|c.716-201A>T||||||	GT:AD:DP:GQ:PL	0/1:15,6:21:99:160,0,389	scaffold10016_cov64	GLEAN	mRNA	247699	249357	1.00	+	.	ID=Soaet10008794
scaffold10016_cov64	248923	.	A	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.59;ReadPosRankSum=-0.262;SOR=0.627;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_245851_246321|GENE_EXON_scaffold10016_cov64_245851_246321|transcript|Soaet10008793|protein_coding||c.*2602A>C|||||2602|,C|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_252532_252545|GENE_EXON_scaffold10016_cov64_252532_252545|transcript|Soaet10008795|protein_coding||c.*3609T>G|||||3609|,C|intron_variant|MODIFIER|EXON_scaffold10016_cov64_247699_248413|GENE_EXON_scaffold10016_cov64_247699_248413|transcript|Soaet10008794|protein_coding|1/1|c.716-199A>C||||||	GT:AD:DP:GQ:PL	0/1:15,5:20:99:160,0,390	scaffold10016_cov64	GLEAN	mRNA	247699	249357	1.00	+	.	ID=Soaet10008794
scaffold10016_cov64	248924	.	T	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.394;SOR=0.627;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_245851_246321|GENE_EXON_scaffold10016_cov64_245851_246321|transcript|Soaet10008793|protein_coding||c.*2603T>A|||||2603|,A|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_252532_252545|GENE_EXON_scaffold10016_cov64_252532_252545|transcript|Soaet10008795|protein_coding||c.*3608A>T|||||3608|,A|intron_variant|MODIFIER|EXON_scaffold10016_cov64_247699_248413|GENE_EXON_scaffold10016_cov64_247699_248413|transcript|Soaet10008794|protein_coding|1/1|c.716-198T>A||||||	GT:AD:DP:GQ:PL	0/1:15,5:20:99:166,0,388	scaffold10016_cov64	GLEAN	mRNA	247699	249357	1.00	+	.	ID=Soaet10008794
scaffold10016_cov64	248938	.	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.336;SOR=0.892;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_245851_246321|GENE_EXON_scaffold10016_cov64_245851_246321|transcript|Soaet10008793|protein_coding||c.*2617A>G|||||2617|,G|downstream_gene_variant|MODIFIER|EXON_scaffold10016_cov64_252532_252545|GENE_EXON_scaffold10016_cov64_252532_252545|transcript|Soaet10008795|protein_coding||c.*3594T>C|||||3594|,G|intron_variant|MODIFIER|EXON_scaffold10016_cov64_247699_248413|GENE_EXON_scaffold10016_cov64_247699_248413|transcript|Soaet10008794|protein_coding|1/1|c.716-184A>G||||||	GT:AD:DP:GQ:PL	0/1:16,3:19:85:85,0,427	scaffold10016_cov64	GLEAN	mRNA	247699	249357	1.00	+	.	ID=Soaet10008794
scaffold10936_cov56	235262	.	G	A	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.34;MQ0=0;MQRankSum=1.599;QD=19.45;ReadPosRankSum=1.307;SOR=0.368;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.61G>A|p.Gly21Arg|61/4491|61/4491|21/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,18:26:99:534,0,147	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235278	.	A	G	791.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=29.32;SOR=0.765;ANN=G|stop_retained_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.77A>G|p.Ter26Ter|77/4491|77/4491|26/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:820,60,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235757	.	C	T	403.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.92;SOR=0.818;ANN=T|stop_gained|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.556C>T|p.Gln186*|556/4491|556/4491|186/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:30:432,30,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235848	.	T	C	424.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.94;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.647T>C|p.Leu216Ser|647/4491|647/4491|216/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,12:13:33:453,33,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235874	.	G	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8149;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-1.225;QD=12.93;ReadPosRankSum=-1.269;SOR=0.729;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.673G>A|p.Val225Ile|673/4491|673/4491|225/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:248,0,261	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235884	.	C	T	491.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.189;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9074;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=1.828;QD=30.75;ReadPosRankSum=0.868;SOR=0.275;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.683C>T|p.Thr228Ile|683/4491|683/4491|228/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,15:16:13:520,13,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235886	.	A	G	566.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=24.95;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.685A>G|p.Thr229Ala|685/4491|685/4491|229/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:45:595,45,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235921	.	T	G	813.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.123;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-1.348;QD=31.30;ReadPosRankSum=-1.334;SOR=1.144;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.720T>G|p.Ile240Met|720/4491|720/4491|240/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,25:26:60:842,60,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235953	.	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.57;MQ0=0;MQRankSum=-1.499;QD=5.55;ReadPosRankSum=-0.705;SOR=0.671;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.752T>C|p.Met251Thr|752/4491|752/4491|251/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,12:36:99:228,0,718	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	235992	.	G	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.791;HaplotypeScore=2.9066;MLEAC=1;MLEAF=0.500;MQ=49.43;MQ0=0;MQRankSum=-1.582;QD=5.71;ReadPosRankSum=2.274;SOR=1.381;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.791G>C|p.Trp264Ser|791/4491|791/4491|264/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,15:46:99:291,0,754	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236002	.	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.885;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=49.04;MQ0=0;MQRankSum=-1.459;QD=5.09;ReadPosRankSum=2.417;SOR=1.445;ANN=A|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.801G>A|p.Leu267Leu|801/4491|801/4491|267/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,15:44:99:252,0,749	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236011	.	G	A	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.223;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=47.79;MQ0=0;MQRankSum=1.020;QD=14.61;ReadPosRankSum=-1.662;SOR=0.666;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.810G>A|p.Met270Ile|810/4491|810/4491|270/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,28:44:99:671,0,280	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236023	.	A	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=0;MQRankSum=1.065;QD=13.71;ReadPosRankSum=-0.194;SOR=0.667;ANN=T|stop_lost|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.822A>T|p.Ter274Cysext*?|822/4491|822/4491|274/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,29:46:99:659,0,269	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236027	.	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=46.80;MQ0=0;MQRankSum=-0.935;QD=5.72;ReadPosRankSum=0.244;SOR=0.804;ANN=C|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.826T>C|p.Leu276Leu|826/4491|826/4491|276/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,17:47:99:297,0,737	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236054	.	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.7454;MLEAC=1;MLEAF=0.500;MQ=46.34;MQ0=0;MQRankSum=1.112;QD=3.73;ReadPosRankSum=1.064;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.853G>A|p.Gly285Ser|853/4491|853/4491|285/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,12:46:99:200,0,897	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236061	.	T	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=11.8304;MLEAC=1;MLEAF=0.500;MQ=46.38;MQ0=0;MQRankSum=-0.917;QD=4.81;ReadPosRankSum=-1.248;SOR=0.976;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.860T>C|p.Phe287Ser|860/4491|860/4491|287/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,14:44:99:240,0,818	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236086	.	G	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9157;MLEAC=1;MLEAF=0.500;MQ=41.87;MQ0=2;MQRankSum=-1.346;QD=2.40;ReadPosRankSum=-0.544;SOR=0.430;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.885G>C|p.Trp295Cys|885/4491|885/4491|295/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,9:34:99:110,0,720	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236122	.	C	T	466.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.039;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=34.93;MQ0=4;MQRankSum=0.568;QD=20.30;ReadPosRankSum=0.504;SOR=0.093;ANN=T|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.921C>T|p.His307His|921/4491|921/4491|307/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,18:23:23:495,0,23	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236125	.	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=34.40;MQ0=4;MQRankSum=-0.302;QD=1.67;ReadPosRankSum=-0.831;SOR=2.613;ANN=T|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.924C>T|p.Cys308Cys|924/4491|924/4491|308/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,5:22:65:65,0,455	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236188	.	T	C	331.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.34;MQ0=6;MQRankSum=-2.190;QD=17.44;ReadPosRankSum=1.386;SOR=1.802;ANN=C|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.987T>C|p.Tyr329Tyr|987/4491|987/4491|329/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,17:19:9:359,0,9	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236339	.	T	C	589.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=1;QD=28.08;SOR=1.127;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1138T>C|p.Tyr380His|1138/4491|1138/4491|380/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:618,45,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236370	.	G	A	870.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=1;QD=33.49;SOR=1.893;ANN=A|stop_retained_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1169G>A|p.Ter390Ter|1169/4491|1169/4491|390/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,25:26:66:899,66,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236613	.	G	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.82;MQ0=1;MQRankSum=2.520;QD=6.19;ReadPosRankSum=-0.193;SOR=0.536;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1412G>T|p.Cys471Phe|1412/4491|1412/4491|471/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,12:46:99:313,0,752	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236660	.	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.172;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=51.23;MQ0=1;MQRankSum=-6.278;QD=2.01;ReadPosRankSum=0.444;SOR=0.512;ANN=T|stop_gained|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1459C>T|p.Gln487*|1459/4491|1459/4491|487/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,15:53:99:135,0,1083	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236667	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.194;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=51.41;MQ0=1;MQRankSum=-6.348;QD=1.55;ReadPosRankSum=0.697;SOR=0.478;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1466G>A|p.Gly489Asp|1466/4491|1466/4491|489/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,15:54:99:112,0,1151	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236709	.	A	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.118;HaplotypeScore=2.3838;MLEAC=1;MLEAF=0.500;MQ=52.68;MQ0=2;MQRankSum=-5.823;QD=1.41;ReadPosRankSum=0.591;SOR=0.956;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1508A>C|p.Asp503Ala|1508/4491|1508/4491|503/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:43,12:55:99:106,0,1226	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236710	.	C	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.524;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=53.17;MQ0=1;MQRankSum=-6.308;QD=1.35;ReadPosRankSum=0.340;SOR=1.143;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1509C>G|p.Asp503Glu|1509/4491|1509/4491|503/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:42,12:54:99:101,0,1236	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236720	.	T	A	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.801;DP=52;Dels=0.00;ExcessHet=3.0103;FS=5.648;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=1;MQRankSum=6.216;QD=22.09;ReadPosRankSum=0.917;SOR=0.937;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1519T>A|p.Ser507Thr|1519/4491|1519/4491|507/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,40:52:99:1177,0,114	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236766	.	C	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=1;MQRankSum=1.160;QD=12.78;ReadPosRankSum=1.399;SOR=0.793;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1565C>T|p.Thr522Ile|1565/4491|1565/4491|522/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,19:38:99:514,0,519	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236781	.	A	G	969.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=1;QD=26.94;SOR=1.002;ANN=G|stop_retained_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1580A>G|p.Ter527Ter|1580/4491|1580/4491|527/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:72:998,72,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236903	.	A	T	1028.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.848;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=3.627;QD=29.39;ReadPosRankSum=-1.529;SOR=0.146;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1702A>T|p.Asn568Tyr|1702/4491|1702/4491|568/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,33:35:58:1057,58,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236958	.	A	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.873;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=0.390;QD=12.97;ReadPosRankSum=-0.380;SOR=1.014;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1757A>T|p.Lys586Ile|1757/4491|1757/4491|586/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:521,0,402	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	236996	.	A	G	1152.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=32.02;SOR=0.927;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1795A>G|p.Thr599Ala|1795/4491|1795/4491|599/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1181,84,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237026	.	T	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-0.880;QD=12.88;ReadPosRankSum=0.875;SOR=1.371;ANN=C|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1825T>C|p.Leu609Leu|1825/4491|1825/4491|609/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:479,0,466	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237132	.	T	C	641.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.67;SOR=1.136;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.1931T>C|p.Leu644Ser|1931/4491|1931/4491|644/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:48:670,48,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237295	.	A	G	597.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=29.89;SOR=2.093;ANN=G|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2094A>G|p.Ser698Ser|2094/4491|2094/4491|698/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:626,45,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237400	.	G	A	903.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.47;SOR=1.302;ANN=A|stop_gained|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2199G>A|p.Trp733*|2199/4491|2199/4491|733/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:932,69,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237475	.	G	C	1152.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.90;SOR=0.811;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2274G>C|p.Lys758Asn|2274/4491|2274/4491|758/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1181,84,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237614	.	T	G	1571.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=29.70;SOR=0.883;ANN=G|stop_lost|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2413T>G|p.Ter805Glyext*?|2413/4491|2413/4491|805/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1600,117,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237806	.	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.199;HaplotypeScore=5.7257;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=0;MQRankSum=-6.426;QD=0.92;ReadPosRankSum=1.828;SOR=1.665;ANN=C|stop_lost|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2605T>C|p.Ter869Glnext*?|2605/4491|2605/4491|869/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,14:53:76:76,0,1143	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237879	.	G	A	1021.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.314;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=45.84;MQ0=0;MQRankSum=4.972;QD=20.86;ReadPosRankSum=0.489;SOR=1.121;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2678G>A|p.Arg893Gln|2678/4491|2678/4491|893/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,37:49:5:1049,0,5	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237892	.	A	G	948.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.5646;MLEAC=1;MLEAF=0.500;MQ=45.03;MQ0=0;QD=31.63;SOR=1.329;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2691A>G|p.Ile897Met|2691/4491|2691/4491|897/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:39:73:964,73,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237894	.	AT	A	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DP=38;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=44.57;MQ0=0;MQRankSum=1.400;QD=10.82;RPA=8,7;RU=T;ReadPosRankSum=-0.548;SOR=0.425;STR;ANN=A|frameshift_variant|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2701delT|p.Tyr901fs|2701/4491|2701/4491|901/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|1|1.00)	GT:AD:DP:GQ:PL	0/1:16,13:32:99:351,0,387	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237930	.	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=44.14;MQ0=0;MQRankSum=-0.546;QD=2.79;ReadPosRankSum=1.455;SOR=0.804;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2729T>C|p.Ile910Thr|2729/4491|2729/4491|910/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,6:29:99:109,0,673	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	237978	.	G	A	29.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=34;Dels=0.00;ExcessHet=3.0103;FS=9.688;HaplotypeScore=2.6475;MLEAC=1;MLEAF=0.500;MQ=51.93;MQ0=0;MQRankSum=-4.444;QD=0.88;ReadPosRankSum=-1.365;SOR=4.172;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2777G>A|p.Cys926Tyr|2777/4491|2777/4491|926/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,7:34:58:58,0,823	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238093	.	T	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.110;HaplotypeScore=4.6467;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=0;MQRankSum=1.901;QD=11.49;ReadPosRankSum=-1.014;SOR=0.242;ANN=C|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2892T>C|p.Tyr964Tyr|2892/4491|2892/4491|964/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:442,0,460	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238118	.	A	G	832.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=27.76;SOR=1.536;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.2917A>G|p.Thr973Ala|2917/4491|2917/4491|973/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:63:861,63,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238275	.	C	T	506.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.81;SOR=1.739;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3074C>T|p.Thr1025Ile|3074/4491|3074/4491|1025/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:535,39,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238395	.	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9989;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=32.86;SOR=0.756;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3194C>T|p.Thr1065Ile|3194/4491|3194/4491|1065/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1047,75,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238431	.	A	C	1052.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=26.99;SOR=0.850;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3230A>C|p.Lys1077Thr|3230/4491|3230/4491|1077/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,39:39:75:1081,75,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238484	.	A	G	953.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=28.05;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3283A>G|p.Arg1095Gly|3283/4491|3283/4491|1095/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:69:982,69,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238492	.	T	G	867.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=26.30;SOR=0.752;ANN=G|stop_gained|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3291T>G|p.Tyr1097*|3291/4491|3291/4491|1097/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:63:896,63,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238540	.	A	G	766.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=29.49;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3339A>G|p.Ile1113Met|3339/4491|3339/4491|1113/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:795,57,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238553	.	A	G	737.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=29.51;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3352A>G|p.Lys1118Glu|3352/4491|3352/4491|1118/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:766,54,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238562	.	G	T	648.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=32.44;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3361G>T|p.Gly1121Trp|3361/4491|3361/4491|1121/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:677,51,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238615	.	G	A	534.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=28.15;SOR=1.292;ANN=A|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3414G>A|p.Leu1138Leu|3414/4491|3414/4491|1138/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:563,42,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238657	.	A	G	612.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=34.04;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3456A>G|p.Ile1152Met|3456/4491|3456/4491|1152/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:48:641,48,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238704	.	C	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DP=25;Dels=0.00;ExcessHet=3.0103;FS=9.132;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=0;MQRankSum=-1.668;QD=9.83;ReadPosRankSum=-0.472;SOR=0.758;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3503C>A|p.Ser1168Tyr|3503/4491|3503/4491|1168/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,10:25:99:274,0,467	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238770	.	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.073;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.553;SOR=1.048;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3569C>T|p.Pro1190Leu|3569/4491|3569/4491|1190/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,20:33:99:475,0,285	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238881	.	A	T	749.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.24;SOR=1.051;ANN=T|stop_lost|HIGH|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3680A>T|p.Ter1227Leuext*?|3680/4491|3680/4491|1227/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:778,57,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238904	.	C	T	746.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=28.72;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3703C>T|p.Leu1235Phe|3703/4491|3703/4491|1235/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:54:775,54,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	238955	.	G	A	602.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=27.40;SOR=1.085;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3754G>A|p.Val1252Met|3754/4491|3754/4491|1252/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:45:631,45,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239006	.	G	T	477.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=29.86;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3805G>T|p.Gly1269Cys|3805/4491|3805/4491|1269/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:36:506,36,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239010	.	T	C	506.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=29.81;SOR=1.061;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3809T>C|p.Met1270Thr|3809/4491|3809/4491|1270/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:535,39,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239044	.	G	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.21;MQ0=2;MQRankSum=-0.560;QD=8.32;ReadPosRankSum=0.538;SOR=0.551;ANN=A|synonymous_variant|LOW|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3843G>A|p.Leu1281Leu|3843/4491|3843/4491|1281/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:203,0,295	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239091	.	C	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.81;MQ0=2;MQRankSum=0.137;QD=4.84;ReadPosRankSum=-0.984;SOR=0.368;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.3890C>A|p.Ala1297Glu|3890/4491|3890/4491|1297/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,4:14:96:96,0,221	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239414	.	A	C	853.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=30.49;SOR=0.836;ANN=C|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.4213A>C|p.Ile1405Leu|4213/4491|4213/4491|1405/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:882,63,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239450	.	G	A	856.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=3.208;QD=25.20;ReadPosRankSum=1.869;SOR=0.818;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.4249G>A|p.Val1417Ile|4249/4491|4249/4491|1417/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,32:34:25:885,25,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239478	.	G	A	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.27;MQ0=0;MQRankSum=1.327;QD=18.22;ReadPosRankSum=-0.300;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.4277G>A|p.Gly1426Asp|4277/4491|4277/4491|1426/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,26:36:99:684,0,262	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold10936_cov56	239496	.	A	G	871.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.617;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=2.943;QD=26.42;ReadPosRankSum=-0.416;SOR=0.892;ANN=G|missense_variant|MODERATE|EXON_scaffold10936_cov56_235202_239692|GENE_EXON_scaffold10936_cov56_235202_239692|transcript|Soaet10009472|protein_coding|1/1|c.4295A>G|p.Asn1432Ser|4295/4491|4295/4491|1432/1496||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,31:33:25:900,25,0	scaffold10936_cov56	GLEAN	mRNA	235202	239692	0.97	+	.	ID=Soaet10009472
scaffold11964_cov52	77751	.	T	C	537.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.63;SOR=1.061;ANN=C|intron_variant|MODIFIER|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|3/4|c.445-100A>G||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:42:566,42,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	77845	.	G	A	527.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.32;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|3/4|c.445-194C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:39:556,39,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	78447	.	A	T	690.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.89;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|3/4|c.444+78T>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:51:719,51,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	78587	.	C	T	682.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SOR=1.371;ANN=T|missense_variant|MODERATE|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|3/5|c.382G>A|p.Gly128Arg|382/678|382/678|128/225||	GT:AD:DP:GQ:PL	1/1:0,17:17:51:711,51,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	79278	.	G	C	670.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SOR=0.793;ANN=C|intron_variant|MODIFIER|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|2/4|c.280+559C>G||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:51:699,51,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	79524	.	G	A	617.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.42;SOR=0.990;ANN=A|intron_variant|MODIFIER|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|2/4|c.280+313C>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:45:646,45,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	79538	.	T	C	562.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.26;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|2/4|c.280+299A>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:42:591,42,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	80337	.	T	C	314.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;SOR=1.270;ANN=C|intron_variant|MODIFIER|EXON_scaffold11964_cov52_77397_77522|GENE_EXON_scaffold11964_cov52_77397_77522|transcript|Soaet10009475|protein_coding|1/4|c.24-244A>G||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:24:343,24,0	scaffold11964_cov52	GLEAN	mRNA	77397	80820	0.30	-	.	ID=Soaet10009475
scaffold11964_cov52	266423	.	A	T	850.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.000;QD=28.36;ReadPosRankSum=0.751;SOR=0.328;ANN=T|missense_variant|MODERATE|EXON_scaffold11964_cov52_265010_265471|GENE_EXON_scaffold11964_cov52_265010_265471|transcript|Soaet10009477|protein_coding|2/2|c.1331A>T|p.Gln444Leu|1331/1344|1331/1344|444/447||	GT:AD:DP:GQ:PL	1/1:1,29:30:63:879,63,0	scaffold11964_cov52	GLEAN	mRNA	265010	266436	1.00	+	.	ID=Soaet10009477
scaffold12234_cov62	4342	.	G	A	821.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.35;SOR=0.836;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|10/10|c.3792C>T|p.Asp1264Asp|3792/3957|3792/3957|1264/1318||	GT:AD:DP:GQ:PL	1/1:0,28:28:60:850,60,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	4379	.	C	T	742.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.71;SOR=0.770;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|10/10|c.3755G>A|p.Arg1252His|3755/3957|3755/3957|1252/1318||	GT:AD:DP:GQ:PL	1/1:0,25:25:54:771,54,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	4717	.	C	G	633.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.69;SOR=1.127;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|8/10|c.3600G>C|p.Pro1200Pro|3600/3957|3600/3957|1200/1318||	GT:AD:DP:GQ:PL	1/1:0,20:20:48:662,48,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	4781	.	C	A	933.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.13;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|8/10|c.3536G>T|p.Arg1179Leu|3536/3957|3536/3957|1179/1318||	GT:AD:DP:GQ:PL	1/1:0,30:30:72:962,72,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	5057	.	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.74;ReadPosRankSum=-0.718;SOR=1.230;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|7/9|c.3328-68G>A||||||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:296,0,195	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	5249	.	GA	G	687.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.66;RPA=10,9;RU=A;SOR=1.270;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|7/9|c.3327+16delT||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:72:725,72,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	5274	.	T	C	769.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.61;SOR=1.445;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|7/10|c.3319A>G|p.Asn1107Asp|3319/3957|3319/3957|1107/1318||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:798,57,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	5528	.	C	T	1058.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.08;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|6/9|c.3112+29G>A||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1087,78,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	7130	.	C	T	1225.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.64;SOR=1.151;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|2/10|c.1927G>A|p.Asp643Asn|1927/3957|1927/3957|643/1318||	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1254,90,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	7384	.	T	C	981.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.67;SOR=1.044;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|2/10|c.1673A>G|p.Lys558Arg|1673/3957|1673/3957|558/1318||	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1010,75,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	7775	.	T	G	598.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.94;SOR=1.127;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|1/10|c.1371A>C|p.Val457Val|1371/3957|1371/3957|457/1318||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:627,45,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	8102	.	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.40;SOR=1.270;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|1/10|c.1044T>C|p.Thr348Thr|1044/3957|1044/3957|348/1318||	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1227,87,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	8351	.	C	A	931.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.06;SOR=0.756;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|1/10|c.795G>T|p.Gln265His|795/3957|795/3957|265/1318||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:960,69,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	8485	.	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.83;SOR=0.927;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|1/10|c.661A>G|p.Thr221Ala|661/3957|661/3957|221/1318||	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1174,84,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	8696	.	T	C	1028.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.19;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_4177_4436|GENE_EXON_scaffold12234_cov62_4177_4436|transcript|Soaet10008280|protein_coding|1/10|c.450A>G|p.Ile150Met|450/3957|450/3957|150/1318||	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1057,75,0	scaffold12234_cov62	GLEAN	mRNA	4177	9145	0.16	-	.	ID=Soaet10008280
scaffold12234_cov62	37530	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;DP=33;Dels=0.00;ExcessHet=3.0103;FS=4.731;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=-2.990;QD=0.75;ReadPosRankSum=-0.655;SOR=0.136;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10364C>T|p.Ala3455Val|10364/10521|10364/10521|3455/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,6:33:53:53,0,929	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37535	.	A	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.607;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-2.934;QD=0.96;ReadPosRankSum=0.145;SOR=0.148;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10359T>C|p.Gly3453Gly|10359/10521|10359/10521|3453/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,6:32:59:59,0,852	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37565	.	G	A	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-2.282;QD=0.87;ReadPosRankSum=3.296;SOR=0.713;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10329C>T|p.Cys3443Cys|10329/10521|10329/10521|3443/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,5:33:57:57,0,827	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37577	.	T	A	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-2.193;QD=0.93;ReadPosRankSum=3.528;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10317A>T|p.Lys3439Asn|10317/10521|10317/10521|3439/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,5:31:57:57,0,837	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37584	.	G	A	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-2.193;QD=0.93;ReadPosRankSum=3.309;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10310C>T|p.Thr3437Ile|10310/10521|10310/10521|3437/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,5:31:57:57,0,801	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37592	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-2.147;QD=1.16;ReadPosRankSum=2.396;SOR=0.760;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10302G>A|p.Leu3434Leu|10302/10521|10302/10521|3434/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,5:30:63:63,0,743	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37600	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-2.193;QD=1.02;ReadPosRankSum=1.533;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10294C>A|p.Pro3432Thr|10294/10521|10294/10521|3432/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,5:31:60:60,0,793	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37611	.	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.011;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.702;SOR=1.518;ANN=C|stop_retained_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10283A>G|p.Ter3428Ter|10283/10521|10283/10521|3428/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,4:30:60:60,0,786	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37619	.	C	T	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.796;SOR=1.476;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10275G>A|p.Ser3425Ser|10275/10521|10275/10521|3425/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,4:31:55:55,0,814	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37620	.	G	T	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.300;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.684;SOR=1.492;ANN=T|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10274C>A|p.Ser3425*|10274/10521|10274/10521|3425/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,4:32:52:52,0,820	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	37697	.	C	T	817.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.26;SOR=0.976;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.10197G>A|p.Ser3399Ser|10197/10521|10197/10521|3399/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:60:846,60,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38069	.	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.125;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.9825C>T|p.Ser3275Ser|9825/10521|9825/10521|3275/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:140,0,186	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38447	.	C	A	838.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=32.26;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.9447G>T|p.Met3149Ile|9447/10521|9447/10521|3149/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:867,63,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38574	.	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=1;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.254;SOR=0.446;ANN=T|stop_retained_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.9320G>A|p.Ter3107Ter|9320/10521|9320/10521|3107/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,9:22:99:168,0,400	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38618	.	A	G	458.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.35;SOR=1.609;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.9276T>C|p.Val3092Val|9276/10521|9276/10521|3092/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,13:13:36:487,36,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38661	.	AAT	A	238.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.11;RPA=10,9;RU=AT;SOR=0.941;STR;ANN=A|frameshift_variant|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.9231_9232delAT|p.Phe3078fs|9232/10521|9231/10521|3077/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,7:10:21:276,21,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38715	.	T	C	429.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=28.65;SOR=1.112;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.9179A>G|p.Gln3060Arg|9179/10521|9179/10521|3060/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:458,33,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38739	.	T	C	433.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=30.98;SOR=0.976;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.9155A>G|p.His3052Arg|9155/10521|9155/10521|3052/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:33:462,33,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38937	.	T	C	406.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SOR=0.941;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8957A>G|p.Glu2986Gly|8957/10521|8957/10521|2986/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:30:435,30,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	38975	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.639;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8919C>T|p.Asn2973Asn|8919/10521|8919/10521|2973/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,4:18:81:81,0,315	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	39396	.	GA	G	785.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.16;RPA=6,5;RU=A;SOR=0.776;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8497delT|p.Ser2833fs|8497/10521|8497/10521|2833/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,23:24:69:823,69,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	39476	.	T	C	727.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.11;SOR=0.770;ANN=C|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8418A>G|p.Ter2806Trpext*?|8418/10521|8418/10521|2806/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:756,54,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	39634	.	A	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.193;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.30;ReadPosRankSum=-0.707;SOR=1.472;ANN=T|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8260T>A|p.Ter2754Lysext*?|8260/10521|8260/10521|2754/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,10:16:99:289,0,170	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	39721	.	T	C	401.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.91;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8173A>G|p.Lys2725Glu|8173/10521|8173/10521|2725/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,13:13:30:430,30,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	39773	.	C	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.723;SOR=0.223;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8121G>T|p.Leu2707Phe|8121/10521|8121/10521|2707/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:102,0,223	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	39863	.	G	A	224.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SOR=0.892;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.8031C>T|p.Asp2677Asp|8031/10521|8031/10521|2677/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,9:9:18:253,18,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	39923	.	G	A	213.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.44;ReadPosRankSum=0.159;SOR=0.223;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7971C>T|p.Phe2657Phe|7971/10521|7971/10521|2657/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,10:11:19:242,0,19	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40108	.	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-0.424;SOR=0.569;ANN=A|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7786C>T|p.Gln2596*|7786/10521|7786/10521|2596/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:295,0,291	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40414	.	G	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=1.503;QD=17.74;ReadPosRankSum=0.674;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7480C>A|p.Leu2494Ile|7480/10521|7480/10521|2494/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,16:24:99:454,0,235	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40475	.	A	C	827.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=28.54;SOR=0.760;ANN=C|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7419T>G|p.Arg2473Arg|7419/10521|7419/10521|2473/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:30:60:856,60,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40622	.	G	A	530.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.49;SOR=0.914;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7272C>T|p.Asn2424Asn|7272/10521|7272/10521|2424/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:559,39,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40781	.	C	T	299.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=3.745;QD=21.41;ReadPosRankSum=-0.640;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7113G>A|p.Arg2371Arg|7113/10521|7113/10521|2371/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,12:14:24:328,24,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40797	.	C	T	361.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=3.876;QD=24.12;ReadPosRankSum=0.595;SOR=0.836;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7097G>A|p.Cys2366Tyr|7097/10521|7097/10521|2366/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,13:15:27:390,27,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40812	.	G	A	397.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.196;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=4.009;QD=26.52;ReadPosRankSum=0.116;SOR=1.108;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7082C>T|p.Pro2361Leu|7082/10521|7082/10521|2361/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,14:15:30:426,30,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40826	.	C	T	443.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.307;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=4.250;QD=26.10;ReadPosRankSum=0.512;SOR=1.000;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7068G>A|p.Val2356Val|7068/10521|7068/10521|2356/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,16:17:33:472,33,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40881	.	T	C	557.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.81;SOR=1.061;ANN=C|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.7013A>G|p.Ter2338Trpext*?|7013/10521|7013/10521|2338/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,17:17:42:586,42,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40911	.	T	C	575.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.79;SOR=1.127;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.6983A>G|p.Glu2328Gly|6983/10521|6983/10521|2328/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:42:604,42,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	40918	.	G	A	613.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.23;SOR=1.230;ANN=A|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.6976C>T|p.Gln2326*|6976/10521|6976/10521|2326/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:642,45,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	41263	.	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.972;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-1.286;SOR=0.100;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.6631C>T|p.Arg2211Cys|6631/10521|6631/10521|2211/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,19:29:99:522,0,344	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	41424	.	T	C	945.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.51;SOR=1.044;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.6470A>G|p.Lys2157Arg|6470/10521|6470/10521|2157/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:974,69,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	41592	.	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.687;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.260;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.6302C>T|p.Thr2101Met|6302/10521|6302/10521|2101/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:282,0,407	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	41691	.	G	A	590.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.6203C>T|p.Ser2068Phe|6203/10521|6203/10521|2068/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:20:45:619,45,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42298	.	TTA	T	768.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=27.40;SOR=1.244;ANN=T|frameshift_variant|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5594_5595delTA|p.Leu1865fs|5595/10521|5594/10521|1865/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:806,48,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42440	.	T	C	359.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=27.68;SOR=0.836;ANN=C|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5454A>G|p.Arg1818Arg|5454/10521|5454/10521|1818/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:388,27,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42580	.	A	C	510.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=28.38;SOR=0.693;ANN=C|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5314T>G|p.Ter1772Gluext*?|5314/10521|5314/10521|1772/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:539,39,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42741	.	T	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=30;Dels=0.00;ExcessHet=3.0103;FS=8.418;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=0;MQRankSum=-5.043;QD=2.69;ReadPosRankSum=-0.393;SOR=3.383;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5153A>C|p.Glu1718Ala|5153/10521|5153/10521|1718/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,7:30:99:109,0,722	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42750	.	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.558;HaplotypeScore=12.9067;MLEAC=1;MLEAF=0.500;MQ=52.16;MQ0=0;MQRankSum=-2.297;QD=1.27;ReadPosRankSum=-1.964;SOR=1.897;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5144A>G|p.Tyr1715Cys|5144/10521|5144/10521|1715/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,4:34:70:70,0,899	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42753	.	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.594;HaplotypeScore=12.9067;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-2.609;QD=1.17;ReadPosRankSum=-2.077;SOR=1.646;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5141G>A|p.Arg1714Gln|5141/10521|5141/10521|1714/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,4:33:67:67,0,949	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42754	.	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.969;HaplotypeScore=13.9066;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=0;MQRankSum=-4.124;QD=3.76;ReadPosRankSum=-0.059;SOR=2.857;ANN=A|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5140C>T|p.Arg1714*|5140/10521|5140/10521|1714/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,8:35:99:160,0,927	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42760	.	G	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.014;HaplotypeScore=19.8168;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=0;MQRankSum=-2.648;QD=2.05;ReadPosRankSum=-2.125;SOR=1.874;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5134C>A|p.His1712Asn|5134/10521|5134/10521|1712/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,5:35:99:100,0,1029	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42770	.	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.201;HaplotypeScore=12.8145;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=0;MQRankSum=-2.817;QD=1.58;ReadPosRankSum=-0.842;SOR=2.076;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5124G>A|p.Lys1708Lys|5124/10521|5124/10521|1708/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,5:39:90:90,0,1023	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42779	.	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;DP=46;Dels=0.00;ExcessHet=3.0103;FS=5.430;HaplotypeScore=9.6494;MLEAC=1;MLEAF=0.500;MQ=50.87;MQ0=0;MQRankSum=-4.510;QD=5.58;ReadPosRankSum=-0.098;SOR=1.885;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5115C>T|p.Tyr1705Tyr|5115/10521|5115/10521|1705/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,13:46:99:285,0,1089	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42800	.	T	G	1795.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.959;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.868;QD=32.07;ReadPosRankSum=0.898;SOR=1.919;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5094A>C|p.Ile1698Ile|5094/10521|5094/10521|1698/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1824,135,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42837	.	T	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=67;Dels=0.00;ExcessHet=3.0103;FS=15.811;HaplotypeScore=14.6569;MLEAC=1;MLEAF=0.500;MQ=52.06;MQ0=0;MQRankSum=-6.772;QD=12.27;ReadPosRankSum=0.986;SOR=2.089;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5057A>G|p.Lys1686Arg|5057/10521|5057/10521|1686/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,35:67:99:850,0,848	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42845	.	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=70;Dels=0.00;ExcessHet=3.0103;FS=7.000;HaplotypeScore=13.8252;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=0;MQRankSum=-5.173;QD=5.28;ReadPosRankSum=-0.232;SOR=1.641;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5049C>T|p.Leu1683Leu|5049/10521|5049/10521|1683/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:47,23:70:99:398,0,1267	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42855	.	T	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.876;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=0;MQRankSum=-4.727;QD=6.33;ReadPosRankSum=-1.038;SOR=1.383;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5039A>C|p.Lys1680Thr|5039/10521|5039/10521|1680/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:47,26:73:99:490,0,1341	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42875	.	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.4295;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=-0.704;QD=4.82;ReadPosRankSum=-0.963;SOR=0.875;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5019C>T|p.His1673His|5019/10521|5019/10521|1673/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:59,18:77:99:399,0,1528	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42877	.	G	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;DP=77;Dels=0.00;ExcessHet=3.0103;FS=10.556;HaplotypeScore=22.4295;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=5.837;QD=8.59;ReadPosRankSum=2.209;SOR=1.082;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.5017C>A|p.His1673Asn|5017/10521|5017/10521|1673/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:48,29:77:99:690,0,1194	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42907	.	G	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=80;Dels=0.00;ExcessHet=3.0103;FS=5.885;HaplotypeScore=8.2429;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=0;MQRankSum=-5.099;QD=7.80;ReadPosRankSum=0.368;SOR=0.556;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4987C>A|p.Gln1663Lys|4987/10521|4987/10521|1663/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:50,30:80:99:652,0,1314	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42968	.	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=53.01;MQ0=0;MQRankSum=-4.321;QD=7.32;ReadPosRankSum=0.424;SOR=0.575;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4926T>C|p.Gly1642Gly|4926/10521|4926/10521|1642/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:42,22:64:99:497,0,1142	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42988	.	CTA	C	700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=0;MQRankSum=-3.201;QD=13.74;ReadPosRankSum=-2.010;SOR=0.784;ANN=C|frameshift_variant|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4904_4905delTA|p.Ile1635fs|4905/10521|4904/10521|1635/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|1|1.00)	GT:AD:DP:GQ:PL	0/1:34,17:53:99:738,0,1611	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42993	.	C	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.449;HaplotypeScore=40.0554;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=-0.115;QD=5.96;ReadPosRankSum=-0.504;SOR=1.422;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4901G>A|p.Arg1634Lys|4901/10521|4901/10521|1634/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,15:53:99:344,0,956	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	42999	.	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.833;HaplotypeScore=34.3576;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=0;MQRankSum=0.185;QD=5.26;ReadPosRankSum=-0.547;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4895G>A|p.Cys1632Tyr|4895/10521|4895/10521|1632/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,14:52:99:302,0,920	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43006	.	A	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.918;DP=47;Dels=0.00;ExcessHet=3.0103;FS=8.838;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=49.61;MQ0=0;MQRankSum=0.027;QD=5.27;ReadPosRankSum=0.182;SOR=2.572;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4888T>G|p.Phe1630Val|4888/10521|4888/10521|1630/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,10:47:99:276,0,899	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43011	.	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.853;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=49.94;MQ0=0;MQRankSum=-0.111;QD=5.43;ReadPosRankSum=-0.493;SOR=2.655;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4883T>C|p.Leu1628Ser|4883/10521|4883/10521|1628/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:36,10:46:99:278,0,875	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43020	.	T	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.107;HaplotypeScore=15.5522;MLEAC=1;MLEAF=0.500;MQ=48.13;MQ0=0;MQRankSum=0.318;QD=4.13;ReadPosRankSum=-0.426;SOR=2.055;ANN=A|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4874A>T|p.Ter1625Leuext*?|4874/10521|4874/10521|1625/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:36,8:44:99:210,0,796	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43025	.	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.048;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.263;HaplotypeScore=23.3563;MLEAC=1;MLEAF=0.500;MQ=48.42;MQ0=0;MQRankSum=0.218;QD=3.84;ReadPosRankSum=-0.594;SOR=1.981;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4869C>T|p.Gly1623Gly|4869/10521|4869/10521|1623/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,8:45:99:201,0,881	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43028	.	C	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=42;Dels=0.00;ExcessHet=3.0103;FS=8.562;HaplotypeScore=35.0799;MLEAC=1;MLEAF=0.500;MQ=48.55;MQ0=0;MQRankSum=-4.835;QD=13.18;ReadPosRankSum=-1.011;SOR=2.303;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4866G>A|p.Leu1622Leu|4866/10521|4866/10521|1622/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,23:42:99:582,0,420	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43034	.	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=42;Dels=0.00;ExcessHet=3.0103;FS=6.320;HaplotypeScore=45.8702;MLEAC=1;MLEAF=0.500;MQ=48.55;MQ0=0;MQRankSum=-3.861;QD=3.33;ReadPosRankSum=1.595;SOR=2.133;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4860C>T|p.Leu1620Leu|4860/10521|4860/10521|1620/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,10:42:99:168,0,848	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43038	.	G	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;DP=43;Dels=0.00;ExcessHet=3.0103;FS=6.505;HaplotypeScore=34.0221;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=0;MQRankSum=-4.967;QD=5.06;ReadPosRankSum=0.674;SOR=2.139;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4856C>T|p.Thr1619Ile|4856/10521|4856/10521|1619/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,14:43:99:246,0,845	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43041	.	G	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.597;HaplotypeScore=12.6892;MLEAC=1;MLEAF=0.500;MQ=49.39;MQ0=0;MQRankSum=-5.005;QD=5.38;ReadPosRankSum=1.415;SOR=1.850;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4853C>G|p.Ala1618Gly|4853/10521|4853/10521|1618/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,13:42:99:249,0,815	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43050	.	T	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DP=44;Dels=0.00;ExcessHet=3.0103;FS=8.104;HaplotypeScore=9.6189;MLEAC=1;MLEAF=0.500;MQ=48.73;MQ0=0;MQRankSum=-0.673;QD=2.61;ReadPosRankSum=-1.523;SOR=2.925;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4844A>T|p.Gln1615Leu|4844/10521|4844/10521|1615/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,6:44:99:143,0,966	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43064	.	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;DP=32;Dels=0.00;ExcessHet=3.0103;FS=16.949;HaplotypeScore=7.7465;MLEAC=1;MLEAF=0.500;MQ=49.27;MQ0=0;MQRankSum=-4.460;QD=7.93;ReadPosRankSum=2.201;SOR=5.134;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4830T>C|p.Leu1610Leu|4830/10521|4830/10521|1610/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,12:32:99:282,0,467	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43072	.	T	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DP=27;Dels=0.00;ExcessHet=3.0103;FS=11.974;HaplotypeScore=7.7465;MLEAC=1;MLEAF=0.500;MQ=48.37;MQ0=0;MQRankSum=-4.694;QD=10.14;ReadPosRankSum=1.338;SOR=3.600;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4822A>C|p.Thr1608Pro|4822/10521|4822/10521|1608/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,12:27:99:292,0,311	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43118	.	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;DP=21;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=-4.286;QD=2.32;ReadPosRankSum=0.689;SOR=4.143;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4776G>A|p.Gly1592Gly|4776/10521|4776/10521|1592/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,8:21:77:77,0,358	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43130	.	T	TA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=22;ExcessHet=3.0103;FS=12.155;MLEAC=1;MLEAF=0.500;MQ=51.21;MQ0=0;MQRankSum=-3.856;QD=6.84;RPA=2,3;RU=A;ReadPosRankSum=0.935;SOR=3.682;STR;ANN=TA|frameshift_variant|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4763dupT|p.Leu1588fs|4763/10521|4763/10521|1588/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|1|1.00)	GT:AD:DP:GQ:PL	0/1:15,6:21:99:181,0,535	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43145	.	G	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=21;Dels=0.00;ExcessHet=3.0103;FS=9.397;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=52.27;MQ0=0;MQRankSum=-3.851;QD=4.99;ReadPosRankSum=-0.545;SOR=3.682;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4749C>T|p.Pro1583Pro|4749/10521|4749/10521|1583/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,6:21:99:133,0,445	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43793	.	G	T	692.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=0.784;ANN=T|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4101C>A|p.Tyr1367*|4101/10521|4101/10521|1367/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:22:51:721,51,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43825	.	T	C	695.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.63;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.4069A>G|p.Lys1357Glu|4069/10521|4069/10521|1357/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:724,51,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	43974	.	G	A	587.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.94;SOR=0.793;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3920C>T|p.Thr1307Ile|3920/10521|3920/10521|1307/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:616,45,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44481	.	C	T	590.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=28.13;SOR=0.990;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3413G>A|p.Ser1138Asn|3413/10521|3413/10521|1138/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:619,45,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44495	.	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=0;MQRankSum=-4.136;QD=2.09;ReadPosRankSum=-1.850;SOR=0.648;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3399T>A|p.Ser1133Ser|3399/10521|3399/10521|1133/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,3:19:68:68,0,426	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44555	.	G	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.935;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=3.500;QD=20.90;ReadPosRankSum=-0.934;SOR=0.721;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3339C>A|p.Thr1113Thr|3339/10521|3339/10521|1113/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,18:23:67:509,0,67	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44578	.	T	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-3.915;QD=1.84;ReadPosRankSum=1.899;SOR=0.465;ANN=A|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3316A>T|p.Lys1106*|3316/10521|3316/10521|1106/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:27:78:78,0,558	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44593	.	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-3.644;QD=3.24;ReadPosRankSum=1.703;SOR=0.693;ANN=G|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3301T>C|p.Ter1101Glnext*?|3301/10521|3301/10521|1101/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,6:24:99:106,0,491	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44600	.	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-3.855;QD=3.23;ReadPosRankSum=0.880;SOR=0.941;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3294C>T|p.Cys1098Cys|3294/10521|3294/10521|1098/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,7:25:99:109,0,506	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44623	.	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-2.424;QD=4.05;ReadPosRankSum=0.061;SOR=1.518;ANN=A|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3271C>T|p.Gln1091*|3271/10521|3271/10521|1091/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,4:16:93:93,0,339	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44624	.	T	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-2.424;QD=4.05;ReadPosRankSum=0.061;SOR=1.518;ANN=G|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3270A>C|p.Ter1090Cysext*?|3270/10521|3270/10521|1090/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,4:16:93:93,0,349	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44630	.	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQ0=0;MQRankSum=-2.527;QD=3.52;ReadPosRankSum=0.568;SOR=1.561;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3264A>G|p.Ile1088Met|3264/10521|3264/10521|1088/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,4:17:88:88,0,384	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	44861	.	G	A	736.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=30.70;SOR=1.051;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.3033C>T|p.Ile1011Ile|3033/10521|3033/10521|1011/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:765,54,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45005	.	A	G	817.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.29;SOR=0.765;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.2889T>C|p.Asn963Asn|2889/10521|2889/10521|963/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:846,60,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45413	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=1.173;QD=5.63;ReadPosRankSum=-0.849;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.2481G>A|p.Thr827Thr|2481/10521|2481/10521|827/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,6:22:99:152,0,455	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45578	.	G	A	654.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=29.76;SOR=0.874;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.2316C>T|p.Tyr772Tyr|2316/10521|2316/10521|772/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:683,48,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45707	.	G	A	658.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.969;HaplotypeScore=2.8990;MLEAC=1;MLEAF=0.500;MQ=48.16;MQ0=2;MQRankSum=4.308;QD=23.53;ReadPosRankSum=-0.347;SOR=0.027;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.2187C>T|p.Cys729Cys|2187/10521|2187/10521|729/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,19:29:0:684,0,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45753	.	G	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8718;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=1;MQRankSum=-1.398;QD=0.37;ReadPosRankSum=1.073;SOR=0.324;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.2141C>T|p.Thr714Ile|2141/10521|2141/10521|714/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,6:45:45:45,0,924	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45791	.	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;DP=44;Dels=0.00;ExcessHet=3.0103;FS=8.121;HaplotypeScore=7.9912;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=1;MQRankSum=-5.661;QD=1.11;ReadPosRankSum=1.481;SOR=1.086;ANN=C|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.2103A>G|p.Ter701Trpext*?|2103/10521|2103/10521|701/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,15:44:76:76,0,828	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45796	.	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8448;MLEAC=1;MLEAF=0.500;MQ=51.04;MQ0=1;MQRankSum=-2.039;QD=1.04;ReadPosRankSum=1.048;SOR=0.478;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.2098T>C|p.Phe700Leu|2098/10521|2098/10521|700/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,9:48:78:78,0,876	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	45961	.	G	C	1315.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4522;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=1;QD=32.09;SOR=0.741;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1933C>G|p.Arg645Gly|1933/10521|1933/10521|645/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1344,99,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46070	.	A	G	910.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.46;SOR=1.473;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1824T>C|p.Asp608Asp|1824/10521|1824/10521|608/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:69:939,69,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46148	.	C	A	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.03;ReadPosRankSum=-0.106;SOR=0.395;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1746G>T|p.Met582Ile|1746/10521|1746/10521|582/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,19:27:99:542,0,230	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46185	.	G	T	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.19;MQ0=4;MQRankSum=0.000;QD=13.71;ReadPosRankSum=0.544;SOR=0.836;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1709C>A|p.Ser570Tyr|1709/10521|1709/10521|570/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,13:26:99:371,0,259	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46311	.	C	T	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.0622;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=2;MQRankSum=-5.765;QD=0.51;ReadPosRankSum=2.716;SOR=0.631;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1583G>A|p.Arg528Gln|1583/10521|1583/10521|528/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,6:37:47:47,0,785	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46311	.	CG	C	1156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=0;MQRankSum=5.762;QD=34.02;ReadPosRankSum=-2.433;SOR=0.531;ANN=C|frameshift_variant|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1582delC|p.Arg528fs|1582/10521|1582/10521|528/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|1|1.00)	GT:AD:DP:GQ:PL	0/1:5,29:34:99:1194,0,106	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46338	.	G	A	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7885;MLEAC=1;MLEAF=0.500;MQ=55.39;MQ0=2;MQRankSum=6.003;QD=23.20;ReadPosRankSum=-1.897;SOR=0.892;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1556C>T|p.Ser519Leu|1556/10521|1556/10521|519/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,31:39:35:933,0,35	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46366	.	T	G	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.817;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-5.771;QD=0.29;ReadPosRankSum=-0.968;SOR=0.939;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1528A>C|p.Ser510Arg|1528/10521|1528/10521|510/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,5:35:38:38,0,880	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46375	.	A	T	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-5.684;QD=0.38;ReadPosRankSum=-1.257;SOR=1.564;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1519T>A|p.Ser507Thr|1519/10521|1519/10521|507/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,4:34:41:41,0,820	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46388	.	C	T	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.198;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-5.504;QD=0.50;ReadPosRankSum=-2.822;SOR=1.609;ANN=T|stop_retained_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1506G>A|p.Ter502Ter|1506/10521|1506/10521|502/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,4:32:44:44,0,750	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46406	.	T	C	849.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.987;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.128;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=5.832;QD=24.99;ReadPosRankSum=2.160;SOR=0.105;ANN=C|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1488A>G|p.Ser496Ser|1488/10521|1488/10521|496/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,32:34:6:877,6,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46618	.	T	G	693.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=24.78;SOR=0.836;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1276A>C|p.Ile426Leu|1276/10521|1276/10521|426/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:54:722,54,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46636	.	A	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.864;HaplotypeScore=5.7813;MLEAC=1;MLEAF=0.500;MQ=47.28;MQ0=0;MQRankSum=-4.345;QD=2.18;ReadPosRankSum=1.597;SOR=2.250;ANN=C|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1258T>G|p.Ter420Glyext*?|1258/10521|1258/10521|420/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,6:28:74:74,0,456	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46647	.	T	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.74;MQ0=0;MQRankSum=-3.438;QD=2.36;ReadPosRankSum=1.802;SOR=1.402;ANN=A|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1247A>T|p.Ter416Leuext*?|1247/10521|1247/10521|416/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,9:27:92:92,0,524	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46694	.	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=49.41;MQ0=0;MQRankSum=-5.140;QD=3.76;ReadPosRankSum=-0.826;SOR=0.512;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1200T>C|p.Phe400Phe|1200/10521|1200/10521|400/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:141,0,501	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46698	.	G	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=49.41;MQ0=0;MQRankSum=-4.445;QD=2.34;ReadPosRankSum=-1.102;SOR=0.602;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1196C>G|p.Thr399Arg|1196/10521|1196/10521|399/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,10:30:96:96,0,500	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46707	.	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.367;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=49.76;MQ0=0;MQRankSum=-4.484;QD=5.93;ReadPosRankSum=-2.100;SOR=0.976;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1187A>G|p.His396Arg|1187/10521|1187/10521|396/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:206,0,454	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46708	.	G	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=49.76;MQ0=0;MQRankSum=-4.798;QD=5.86;ReadPosRankSum=-2.387;SOR=0.722;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1186C>A|p.His396Asn|1186/10521|1186/10521|396/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:204,0,481	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46725	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=49.36;MQ0=0;MQRankSum=-1.942;QD=2.19;ReadPosRankSum=-0.100;SOR=1.222;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1169G>A|p.Gly390Glu|1169/10521|1169/10521|390/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,6:31:96:96,0,568	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46738	.	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.5266;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=0;MQRankSum=-4.658;QD=4.70;ReadPosRankSum=-0.021;SOR=1.270;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1156T>C|p.Leu386Leu|1156/10521|1156/10521|386/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,11:31:99:174,0,499	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46744	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6107;MLEAC=1;MLEAF=0.500;MQ=53.57;MQ0=0;MQRankSum=-3.942;QD=3.32;ReadPosRankSum=1.604;SOR=0.616;ANN=A|stop_gained|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1150C>T|p.Arg384*|1150/10521|1150/10521|384/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,8:31:99:131,0,630	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46745	.	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5938;MLEAC=1;MLEAF=0.500;MQ=53.57;MQ0=0;MQRankSum=-4.632;QD=6.22;ReadPosRankSum=1.268;SOR=1.030;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1149T>C|p.Phe383Phe|1149/10521|1149/10521|383/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,10:31:99:221,0,535	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46755	.	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6875;MLEAC=1;MLEAF=0.500;MQ=51.94;MQ0=0;MQRankSum=-4.354;QD=2.52;ReadPosRankSum=-0.103;SOR=1.165;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1139G>A|p.Arg380His|1139/10521|1139/10521|380/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,11:36:99:119,0,665	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46810	.	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.904;HaplotypeScore=15.5393;MLEAC=1;MLEAF=0.500;MQ=46.77;MQ0=0;MQRankSum=-4.568;QD=9.11;ReadPosRankSum=0.365;SOR=1.099;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1084G>A|p.Ala362Thr|1084/10521|1084/10521|362/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,19:33:99:329,0,392	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46811	.	G	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=16.5384;MLEAC=1;MLEAF=0.500;MQ=46.64;MQ0=0;MQRankSum=4.646;QD=10.26;ReadPosRankSum=-0.175;SOR=1.181;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1083C>T|p.Phe361Phe|1083/10521|1083/10521|361/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,14:34:99:377,0,329	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46818	.	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=20.5953;MLEAC=1;MLEAF=0.500;MQ=46.64;MQ0=0;MQRankSum=-2.268;QD=2.82;ReadPosRankSum=1.524;SOR=1.367;ANN=T|stop_retained_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1076G>A|p.Ter359Ter|1076/10521|1076/10521|359/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,9:34:99:124,0,661	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46824	.	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.4501;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=0;MQRankSum=-3.953;QD=4.58;ReadPosRankSum=1.599;SOR=1.132;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1070C>T|p.Thr357Ile|1070/10521|1070/10521|357/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,13:36:99:193,0,641	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46849	.	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=5.9745;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=-4.251;QD=6.49;ReadPosRankSum=1.822;SOR=1.118;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1045C>T|p.Leu349Leu|1045/10521|1045/10521|349/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:223,0,503	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46852	.	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.590;HaplotypeScore=5.9745;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=0;MQRankSum=-4.704;QD=8.44;ReadPosRankSum=1.997;SOR=1.535;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1042T>C|p.Leu348Leu|1042/10521|1042/10521|348/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:273,0,508	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46853	.	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=4.9829;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=0;MQRankSum=-4.511;QD=6.61;ReadPosRankSum=2.216;SOR=1.399;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1041G>A|p.Met347Ile|1041/10521|1041/10521|347/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:220,0,547	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46858	.	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9829;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=-3.761;QD=3.53;ReadPosRankSum=0.725;SOR=1.362;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1036G>A|p.Glu346Lys|1036/10521|1036/10521|346/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,9:30:99:134,0,577	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46873	.	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=6.9042;MLEAC=1;MLEAF=0.500;MQ=51.47;MQ0=0;MQRankSum=-4.722;QD=7.06;ReadPosRankSum=1.318;SOR=1.128;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1021A>G|p.Ser341Gly|1021/10521|1021/10521|341/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,11:29:99:226,0,467	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46876	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=8.9037;MLEAC=1;MLEAF=0.500;MQ=51.74;MQ0=0;MQRankSum=2.496;QD=5.99;ReadPosRankSum=-0.610;SOR=1.802;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.1018G>A|p.Gly340Ser|1018/10521|1018/10521|340/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,8:31:99:214,0,602	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46900	.	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;DP=29;Dels=0.00;ExcessHet=3.0103;FS=7.045;HaplotypeScore=7.7813;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=0;MQRankSum=-4.636;QD=2.30;ReadPosRankSum=-0.195;SOR=0.893;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.994G>A|p.Val332Ile|994/10521|994/10521|332/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,8:29:95:95,0,649	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46908	.	A	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;DP=30;Dels=0.00;ExcessHet=3.0103;FS=7.416;HaplotypeScore=1.9916;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=0;MQRankSum=-4.661;QD=1.83;ReadPosRankSum=0.294;SOR=0.539;ANN=C|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.986T>G|p.Phe329Cys|986/10521|986/10521|329/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,7:30:83:83,0,769	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46944	.	C	T	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;DP=35;Dels=0.00;ExcessHet=3.0103;FS=8.701;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=0;MQRankSum=-5.770;QD=0.48;ReadPosRankSum=-0.802;SOR=1.876;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.950G>A|p.Cys317Tyr|950/10521|950/10521|317/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,5:35:45:45,0,920	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	46950	.	C	T	939.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.421;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=0;MQRankSum=5.949;QD=26.11;ReadPosRankSum=0.227;SOR=1.051;ANN=T|stop_retained_variant|LOW|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.944G>A|p.Ter315Ter|944/10521|944/10521|315/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,32:36:16:968,0,16	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	47243	.	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.63;MQ0=3;MQRankSum=-2.647;QD=5.94;ReadPosRankSum=0.448;SOR=0.527;ANN=C|stop_lost|HIGH|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.651A>G|p.Ter217Trpext*?|651/10521|651/10521|217/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,14:35:99:236,0,491	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	47563	.	C	T	381.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=31.81;SOR=2.670;ANN=T|missense_variant|MODERATE|EXON_scaffold12234_cov62_37373_47893|GENE_EXON_scaffold12234_cov62_37373_47893|transcript|Soaet10008282|protein_coding|1/1|c.331G>A|p.Val111Met|331/10521|331/10521|111/3506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,12:12:30:410,30,0	scaffold12234_cov62	GLEAN	mRNA	37373	47893	0.19	-	.	ID=Soaet10008282
scaffold12234_cov62	87275	.	G	A	680.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.42;SOR=0.990;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|12/12|c.1342-56C>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:51:709,51,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	89511	.	G	A	301.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|8/12|c.1003-103C>T||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:330,24,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	89782	.	T	C	272.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=1;QD=27.28;SOR=1.402;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|8/12|c.1002+150A>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:21:301,21,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	91905	.	C	T	666.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.34;SOR=1.127;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|5/12|c.715-89G>A||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:51:695,51,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	92385	.	C	A	1210.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=31.05;SOR=1.096;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|5/12|c.715-569G>T||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1239,87,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	92714	.	G	A	48.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=16.25;SOR=2.833;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|5/12|c.715-898C>T||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:76,6,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	92935	.	A	ATGT	225.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=31.01;RPA=6,7;RU=TGT;SOR=1.981;STR;ANN=ATGT|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|5/12|c.714+1049_714+1050insACA||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:15:263,15,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	93426	.	A	G	282.8	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=2;QD=18.85;SOR=0.836;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|5/12|c.714+559T>C||||||	GT:AD:DP:GQ:PL	1/1:2,13:15:21:311,21,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	95108	.	T	C	770.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.03;SOR=1.508;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_87034_87219|GENE_EXON_scaffold12234_cov62_87034_87219|transcript|Soaet10008285|protein_coding|2/12|c.180+41A>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:57:799,57,0	scaffold12234_cov62	GLEAN	mRNA	87034	96215	0.62	-	.	ID=Soaet10008285
scaffold12234_cov62	103544	.	T	C	682.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.69;ReadPosRankSum=0.603;SOR=0.499;ANN=C|synonymous_variant|LOW|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/8|c.699T>C|p.Gly233Gly|699/1632|699/1632|233/543||	GT:AD:DP:GQ:PL	1/1:1,22:23:51:711,51,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104042	.	A	G	551.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.65;SOR=0.914;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*4512T>C|||||4512|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/7|c.721+476A>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:42:580,42,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104099	.	T	C	517.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.36;SOR=0.941;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*4455A>G|||||4455|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/7|c.722-442T>C||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:546,39,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104162	.	CA	C	613.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.64;RPA=3,2;RU=A;SOR=0.693;STR;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*4391delT|||||4391|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/7|c.722-378delA||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:48:651,48,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104289	.	T	TAC	853.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.46;SOR=1.061;ANN=TAC|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*4264_*4265insGT|||||4264|,TAC|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/7|c.722-252_722-251insAC||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:51:891,51,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104322	.	G	A	319.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SOR=0.836;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*4232C>T|||||4232|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/7|c.722-219G>A||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:24:348,24,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104420	.	A	G	319.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SOR=0.836;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*4134T>C|||||4134|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/7|c.722-121A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:24:348,24,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104423	.	A	G	319.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SOR=0.836;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*4131T>C|||||4131|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|1/7|c.722-118A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:24:348,24,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	104915	.	T	G	690.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.89;SOR=0.784;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|3/8|c.1014T>G|p.Val338Val|1014/1632|1014/1632|338/543||,G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*3639A>C|||||3639|	GT:AD:DP:GQ:PL	1/1:0,21:21:51:719,51,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	105511	.	T	C	2202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;DP=222;Dels=0.00;ExcessHet=3.0103;FS=28.496;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=27.76;MQ0=45;MQRankSum=-7.582;QD=10.01;ReadPosRankSum=-4.036;SOR=2.812;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*3043A>G|||||3043|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|5/7|c.1302+162T>C||||||	GT:AD:DP:GQ:PL	0/1:30,190:222:99:2231,0,525	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	105602	.	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;DP=245;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=34.06;MQ0=40;MQRankSum=4.752;QD=0.26;ReadPosRankSum=-4.197;SOR=0.724;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2952G>A|||||2952|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|5/7|c.1302+253C>T||||||	GT:AD:DP:GQ:PL	0/1:231,14:245:93:93,0,3529	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	105677	.	A	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.296;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=44.11;MQ0=0;MQRankSum=-5.217;QD=13.12;ReadPosRankSum=-4.468;SOR=1.189;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2877T>G|||||2877|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|5/7|c.1303-252A>C||||||	GT:AD:DP:GQ:PL	0/1:13,28:41:99:566,0,405	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	105791	.	CTTAACAA	C	1401.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.30;RPA=2,1;RU=TTAACAA;SOR=1.112;STR;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2756_*2762delTTGTTAA|||||2762|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|5/7|c.1303-137_1303-131delTTAACAA||||||	GT:AD:DP:GQ:PL	1/1:0,15:18:45:1439,45,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	105911	.	GAA	G	362.74	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.44;RPA=14,12;RU=A;SOR=1.609;STR;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2641_*2642delTT|||||2642|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|5/7|c.1303-17_1303-16delAA||||||	GT:AD:DP:GQ:PL	1/1:0,10:15:30:400,30,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	105920	.	A	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-2.838;SOR=0.551;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2634T>A|||||2634|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|5/7|c.1303-9A>T||||||	GT:AD:DP:GQ:PL	0/1:9,3:12:61:61,0,237	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	105922	.	A	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.40;ReadPosRankSum=2.838;SOR=0.859;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|5/7|c.1303-7A>T||||||,T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2632T>A|||||2632|	GT:AD:DP:GQ:PL	0/1:3,9:12:57:237,0,57	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106096	.	TAA	T	749.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.79;RPA=12,10;RU=A;SOR=1.127;STR;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2456_*2457delTT|||||2457|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+41_1430+42delAA||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:60:787,60,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106256	.	C	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.04;ReadPosRankSum=-1.054;SOR=0.136;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2298G>T|||||2298|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+200C>A||||||	GT:AD:DP:GQ:PL	0/1:6,13:19:99:371,0,203	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106261	.	T	C	604.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.60;SOR=1.179;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2293A>G|||||2293|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+205T>C||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:45:633,45,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106269	.	T	C	677.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.81;SOR=0.874;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2285A>G|||||2285|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+213T>C||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:706,51,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106286	.	C	T	554.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.626;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.22;ReadPosRankSum=2.344;SOR=0.105;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2268G>A|||||2268|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+230C>T||||||	GT:AD:DP:GQ:PL	1/1:2,20:22:42:583,42,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106325	.	T	C	684.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.24;SOR=0.892;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2229A>G|||||2229|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+269T>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:51:713,51,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106336	.	A	C	673.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.69;SOR=0.892;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2218T>G|||||2218|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+280A>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:51:702,51,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106361	.	C	T	702.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.94;SOR=1.085;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2193G>A|||||2193|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1430+305C>T||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:731,54,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106414	.	A	G	688.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SOR=1.051;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*2140T>C|||||2140|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1431-331A>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:51:717,51,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106578	.	A	T	201.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.83;SOR=2.584;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*1976T>A|||||1976|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|6/7|c.1431-167A>T||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:18:230,18,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	106992	.	C	CTTTAACTT	854.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.05;SOR=0.693;ANN=CTTTAACTT|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding||c.*1561_*1562insAAGTTAAA|||||1561|,CTTTAACTT|intron_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding|7/7|c.1531-20_1531-19insTTTAACTT||||||	GT:AD:DP:GQ:PL	1/1:0,10:11:30:892,30,0	scaffold12234_cov62	GLEAN	mRNA	102846	107113	0.86	+	.	ID=Soaet10008286
scaffold12234_cov62	108861	.	TAAG	T	1626.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;RPA=2,1;RU=AAG;SOR=1.179;STR;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*1749_*1751delAAG|||||1749|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|15/15|c.1753-65_1753-63delCTT||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1664,84,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	109274	.	T	C	907.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.91;SOR=0.846;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*2161T>C|||||2161|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|14/15|c.1639-62A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:69:936,69,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	109361	.	G	A	846.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SOR=0.836;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*2248G>A|||||2248|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|14/15|c.1639-149C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:63:875,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	109418	.	A	G	673.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SOR=1.220;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*2305A>G|||||2305|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|14/15|c.1639-206T>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:51:702,51,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	109456	.	G	T	769.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.07;SOR=1.802;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*2343G>T|||||2343|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|14/15|c.1639-244C>A||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:57:798,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	109888	.	A	G	596.1	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.244;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.10;ReadPosRankSum=-1.265;SOR=1.700;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*2775A>G|||||2775|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|14/15|c.1638+436T>C||||||	GT:AD:DP:GQ:PL	1/1:1,21:22:11:624,11,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	110417	.	T	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-0.581;SOR=0.542;ANN=G|synonymous_variant|LOW|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|14/16|c.1545A>C|p.Pro515Pro|1545/1998|1545/1998|515/665||,G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*3304T>G|||||3304|	GT:AD:DP:GQ:PL	0/1:13,18:31:99:549,0,407	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	110736	.	TTG	T	1378.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.95;SOR=0.765;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*3624_*3625delTG|||||3624|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|13/15|c.1486-262_1486-261delCA||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1416,81,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	111041	.	A	G	1088.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.02;SOR=1.044;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*3928A>G|||||3928|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|13/15|c.1485+391T>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1117,81,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	111200	.	TCA	T	838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=0.953;QD=22.07;RPA=3,2;RU=CA;ReadPosRankSum=0.367;SOR=0.862;STR;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*4088_*4089delCA|||||4088|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|13/15|c.1485+230_1485+231delTG||||||	GT:AD:DP:GQ:PL	0/1:17,21:41:99:876,0,684	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	111355	.	G	A	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.649;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-0.209;SOR=1.219;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*4242G>A|||||4242|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|13/15|c.1485+77C>T||||||	GT:AD:DP:GQ:PL	0/1:13,17:30:99:439,0,378	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	111591	.	G	A	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.485;HaplotypeScore=22.8924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.18;ReadPosRankSum=0.889;SOR=1.035;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|12/16|c.1416C>T|p.Asn472Asn|1416/1998|1416/1998|472/665||,A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*4478G>A|||||4478|	GT:AD:DP:GQ:PL	0/1:11,16:27:99:492,0,303	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	111601	.	T	TC	1044.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.40;RPA=1,2;RU=C;SOR=1.022;STR;ANN=TC|frameshift_variant|HIGH|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|12/16|c.1405dupG|p.Glu469fs|1405/1998|1405/1998|469/665||,TC|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*4488_*4489insC|||||4489|;LOF=(EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,26:27:78:1082,78,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	111778	.	GTA	G	1297.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.48;RPA=3,2;RU=TA;SOR=1.382;STR;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*4666_*4667delTA|||||4666|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|11/15|c.1336-109_1336-108delTA||||||	GT:AD:DP:GQ:PL	1/1:0,28:29:84:1335,84,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	111986	.	A	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.406;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.71;ReadPosRankSum=2.135;SOR=0.585;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|11/15|c.1335+6T>G||||||,C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_102846_103566|GENE_EXON_scaffold12234_cov62_102846_103566|transcript|Soaet10008286|protein_coding||c.*4873A>C|||||4873|	GT:AD:DP:GQ:PL	0/1:17,15:32:99:403,0,429	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112379	.	A	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.967;SOR=0.223;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|10/15|c.1147-199T>G||||||	GT:AD:DP:GQ:PL	0/1:1,2:3:30:39,0,30	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112380	.	A	C	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|10/15|c.1147-200T>G||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112549	.	T	C	303.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SOR=1.445;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|10/15|c.1146+144A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:332,24,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112655	.	G	GTTTCT	1774.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.69;SOR=1.931;ANN=GTTTCT|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|10/15|c.1146+37_1146+38insAGAAA||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:66:1812,66,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112691	.	A	ATG	1223.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.51;SOR=1.697;ANN=ATG|splice_donor_variant&intron_variant|HIGH|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|10/15|c.1146+1_1146+2insCA||||||;LOF=(EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1261,78,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112692	.	C	A	760.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.7584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.70;SOR=2.124;ANN=A|splice_donor_variant&intron_variant|HIGH|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|10/15|c.1146+1G>T||||||;LOF=(EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,24:24:60:789,60,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112744	.	T	C	1026.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.23;SOR=1.536;ANN=C|missense_variant&splice_region_variant|MODERATE|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|10/16|c.1095A>G|p.Ile365Met|1095/1998|1095/1998|365/665||	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1055,75,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112747	.	T	C	979.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.66;SOR=1.536;ANN=C|splice_acceptor_variant&intron_variant|HIGH|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|9/15|c.1094-2A>G||||||;LOF=(EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,30:30:72:1008,72,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112921	.	C	T	1384.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=27.70;SOR=1.157;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|8/15|c.1057-40G>A||||||	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1413,102,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112948	.	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=29.90;SOR=1.105;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|8/15|c.1057-67A>G||||||	GT:AD:DP:GQ:PL	1/1:0,44:44:96:1344,96,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	112983	.	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=29.33;SOR=1.547;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|8/15|c.1057-102C>T||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1084,78,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	113079	.	T	C	844.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SOR=0.859;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|8/15|c.1057-198A>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:63:873,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	113086	.	G	T	779.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.90;SOR=0.776;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|8/15|c.1057-205C>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:57:808,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	113175	.	A	C	820.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SOR=1.220;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|8/15|c.1056+167T>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:27:60:849,60,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	113970	.	A	G	612.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.25;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.971-543T>C||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:45:641,45,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	113975	.	T	A	572.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.82;SOR=0.914;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.971-548A>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:19:42:601,42,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114117	.	A	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.063;SOR=1.288;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.971-690T>G||||||	GT:AD:DP:GQ:PL	0/1:5,9:14:99:195,0,108	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114274	.	T	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.31;ReadPosRankSum=0.568;SOR=0.223;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+780A>T||||||	GT:AD:DP:GQ:PL	0/1:4,8:12:99:260,0,99	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114439	.	T	TGG	1692.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.80;RPA=1,3;RU=G;SOR=0.880;STR;ANN=TGG|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+614_970+615insCC||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1730,99,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114545	.	T	A	774.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.82;SOR=0.990;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+509A>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:57:803,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114546	.	T	A	774.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.62;SOR=0.990;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+508A>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:57:803,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114547	.	T	A	776.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.96;SOR=0.990;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+507A>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:57:805,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114578	.	A	T	723.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.90;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+476T>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:752,54,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114583	.	G	A	801.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.13;SOR=0.784;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+471C>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:60:830,60,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114624	.	A	T	673.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.32;SOR=0.793;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+430T>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:51:702,51,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	114749	.	T	G	907.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.30;SOR=0.760;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|7/15|c.970+305A>C||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:69:936,69,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	115137	.	T	A	657.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.60;SOR=0.963;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|6/15|c.903-16A>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:24:51:686,51,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	115231	.	T	A	747.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.99;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|6/16|c.880A>T|p.Thr294Ser|880/1998|880/1998|294/665||	GT:AD:DP:GQ:PL	1/1:0,22:22:57:776,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	115232	.	T	A	754.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.31;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|6/16|c.879A>T|p.Thr293Thr|879/1998|879/1998|293/665||	GT:AD:DP:GQ:PL	1/1:0,22:22:57:783,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	115465	.	C	CA	291.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.44;RPA=12,13;RU=A;SOR=0.836;STR;ANN=CA|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|5/15|c.677-32_677-31insT||||||	GT:AD:DP:GQ:PL	1/1:0,13:14:39:329,39,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	115816	.	T	A	410.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.60;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|5/15|c.677-382A>T||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:33:439,33,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	115999	.	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8978;MLEAC=1;MLEAF=0.500;MQ=56.15;MQ0=0;MQRankSum=0.366;QD=11.22;ReadPosRankSum=0.619;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|5/15|c.676+563A>G||||||	GT:AD:DP:GQ:PL	0/1:2,6:8:28:118,0,28	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	116682	.	A	T	845.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SOR=0.756;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|4/15|c.571-15T>A||||||	GT:AD:DP:GQ:PL	1/1:0,31:32:63:874,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	116705	.	CA	C	1134.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.95;RPA=4,3;RU=A;SOR=0.826;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|4/15|c.571-39delT||||||	GT:AD:DP:GQ:PL	1/1:0,30:33:90:1172,90,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	117256	.	T	C	847.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.28;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-343A>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:63:876,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	117532	.	G	A	742.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.15;SOR=0.784;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-619C>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:57:771,57,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	117660	.	G	A	1229.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.16;SOR=0.804;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-747C>T||||||	GT:AD:DP:GQ:PL	1/1:0,36:37:90:1258,90,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118029	.	G	C	508.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-1116C>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:537,39,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118105	.	T	G	810.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.31;SOR=0.776;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-1192A>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:60:839,60,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118216	.	G	A	871.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.13;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-1303C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:63:900,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118223	.	G	T	861.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.92;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-1310C>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:890,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118224	.	A	T	898.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.29;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.437-1311T>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:66:927,66,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118412	.	A	C	839.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=33.59;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1385T>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:63:868,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118462	.	AG	A	1094.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.42;RPA=3,2;RU=G;SOR=0.836;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1334delC||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1132,84,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118479	.	A	G	946.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=29.47;SOR=1.101;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1318T>C||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:72:975,72,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118480	.	C	T	972.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=25.43;SOR=1.101;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1317G>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:72:1001,72,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118528	.	TC	T	908.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=30.02;RPA=4,3;RU=C;SOR=1.270;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1268delG||||||	GT:AD:DP:GQ:PL	1/1:0,24:27:72:946,72,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118596	.	G	A	855.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.23;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1201C>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:26:63:884,63,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118656	.	C	A	952.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.85;SOR=1.071;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1141G>T||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:72:981,72,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118672	.	A	G	926.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.40;SOR=1.358;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1125T>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:69:955,69,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118677	.	A	T	882.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.46;SOR=1.270;ANN=T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1120T>A||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:66:911,66,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118680	.	T	A	799.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.408;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.32;ReadPosRankSum=1.735;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1117A>T||||||	GT:AD:DP:GQ:PL	1/1:1,23:24:58:828,58,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	118758	.	T	C	857.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.63;SOR=0.997;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+1039A>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:29:66:886,66,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	119334	.	T	G	633.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.18;SOR=0.990;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+463A>C||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:48:662,48,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	119342	.	C	A	677.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.27;SOR=1.230;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+455G>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:51:706,51,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	119356	.	T	C	697.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.34;SOR=1.426;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+441A>G||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:726,51,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	119377	.	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.429;SOR=0.804;ANN=A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+420C>T||||||	GT:AD:DP:GQ:PL	0/1:12,10:22:99:254,0,297	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	119655	.	GACCAC	G	1365.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=29.61;SOR=1.863;ANN=G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|3/15|c.436+137_436+141delGTGGT||||||	GT:AD:DP:GQ:PL	1/1:0,18:19:54:1403,54,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	120760	.	A	C	914.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.67;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|1/15|c.79+44T>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:943,69,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	120835	.	C	A	881.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.49;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold12234_cov62_108554_108799|GENE_EXON_scaffold12234_cov62_108554_108799|transcript|Soaet10008287|protein_coding|1/16|c.48G>T|p.Gln16His|48/1998|48/1998|16/665||	GT:AD:DP:GQ:PL	1/1:0,28:28:66:910,66,0	scaffold12234_cov62	GLEAN	mRNA	108554	120882	0.23	-	.	ID=Soaet10008287
scaffold12234_cov62	146210	.	T	C	446.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding|1/1|c.27T>C|p.Leu9Leu|27/165|27/165|9/54||,C|upstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.-3515T>C|||||3515|,C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding||c.*4157A>G|||||4157|	GT:AD:DP:GQ:PL	1/1:0,12:12:36:475,36,0	scaffold12234_cov62	GLEAN	mRNA	146184	146348	0.97	+	.	ID=Soaet10008289
scaffold12234_cov62	146231	.	G	A	345.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.77;ReadPosRankSum=1.741;SOR=0.495;ANN=A|synonymous_variant|LOW|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding|1/1|c.48G>A|p.Ser16Ser|48/165|48/165|16/54||,A|upstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.-3494G>A|||||3494|,A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding||c.*4136C>T|||||4136|	GT:AD:DP:GQ:PL	0/1:1,11:12:9:373,0,9	scaffold12234_cov62	GLEAN	mRNA	146184	146348	0.97	+	.	ID=Soaet10008289
scaffold12234_cov62	146274	.	A	G	439.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.47;ReadPosRankSum=-0.651;SOR=0.412;ANN=G|missense_variant|MODERATE|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding|1/1|c.91A>G|p.Thr31Ala|91/165|91/165|31/54||,G|upstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.-3451A>G|||||3451|,G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding||c.*4093T>C|||||4093|	GT:AD:DP:GQ:PL	0/1:1,15:16:3:466,0,3	scaffold12234_cov62	GLEAN	mRNA	146184	146348	0.97	+	.	ID=Soaet10008289
scaffold12234_cov62	150746	.	G	A	856.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.64;SOR=1.044;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4398G>A|||||4398|,A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*646G>A|||||646|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-141C>T||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:63:885,63,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	150863	.	A	G	925.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=33.06;SOR=0.997;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4515A>G|||||4515|,G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*763A>G|||||763|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-258T>C||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:954,69,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	150980	.	G	A	822.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=28.37;SOR=0.906;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4632G>A|||||4632|,A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*880G>A|||||880|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-375C>T||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:60:851,60,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151031	.	C	A	689.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=27.59;SOR=0.941;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4683C>A|||||4683|,A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*931C>A|||||931|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-426G>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:51:718,51,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151043	.	G	A	691.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.997;QD=28.82;ReadPosRankSum=0.209;SOR=1.085;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4695G>A|||||4695|,A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*943G>A|||||943|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-438C>T||||||	GT:AD:DP:GQ:PL	1/1:2,22:24:51:720,51,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151053	.	G	A	729.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.589;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=2.096;QD=29.19;ReadPosRankSum=-0.069;SOR=0.477;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4705G>A|||||4705|,A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*953G>A|||||953|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-448C>T||||||	GT:AD:DP:GQ:PL	1/1:1,24:25:54:758,54,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151132	.	A	C	724.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=32.94;SOR=1.609;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4784A>C|||||4784|,C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1032A>C|||||1032|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-527T>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:23:54:753,54,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151167	.	A	G	883.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=33.99;SOR=1.445;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4819A>G|||||4819|,G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1067A>G|||||1067|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-562T>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:66:912,66,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151218	.	A	G	964.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.16;SOR=0.976;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_146184_146348|GENE_EXON_scaffold12234_cov62_146184_146348|transcript|Soaet10008289|protein_coding||c.*4870A>G|||||4870|,G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1118A>G|||||1118|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-613T>C||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:72:993,72,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151351	.	T	C	1172.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.2315;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=2.999;QD=28.60;ReadPosRankSum=0.999;SOR=1.096;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1251T>C|||||1251|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-746A>G||||||	GT:AD:DP:GQ:PL	1/1:2,39:41:71:1201,71,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151433	.	C	T	1263.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.543;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=4.415;QD=30.82;ReadPosRankSum=0.634;SOR=0.507;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1333C>T|||||1333|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-828G>A||||||	GT:AD:DP:GQ:PL	1/1:1,40:41:78:1292,78,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151479	.	A	G	1187.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.26;SOR=0.798;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1379A>G|||||1379|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-874T>C||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1216,87,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151554	.	C	T	933.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=28.30;SOR=0.752;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1454C>T|||||1454|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-949G>A||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:69:962,69,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151585	.	C	T	951.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=3;MQRankSum=2.357;QD=25.05;ReadPosRankSum=0.446;SOR=0.272;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1485C>T|||||1485|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-980G>A||||||	GT:AD:DP:GQ:PL	1/1:4,34:38:69:980,69,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151661	.	A	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.303;HaplotypeScore=7.4842;MLEAC=1;MLEAF=0.500;MQ=53.61;MQ0=4;MQRankSum=1.254;QD=12.42;ReadPosRankSum=0.039;SOR=1.274;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1561A>G|||||1561|,G|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-1056T>C||||||	GT:AD:DP:GQ:PL	0/1:25,20:45:99:587,0,493	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	151928	.	G	A	1069.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.51;SOR=0.892;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1828G>A|||||1828|,A|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.71-1323C>T||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1098,78,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	152018	.	A	T	597.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=28.47;SOR=1.230;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1918A>T|||||1918|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.70+1375T>A||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:45:626,45,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	152033	.	C	T	558.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=31.04;SOR=1.179;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*1933C>T|||||1933|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.70+1360G>A||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:42:587,42,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	152127	.	T	C	454.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.42;SOR=0.941;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*2027T>C|||||2027|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.70+1266A>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:483,36,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	152209	.	G	C	765.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=30.63;SOR=1.358;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*2109G>C|||||2109|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.70+1184C>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:57:794,57,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	152249	.	T	C	706.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=33.66;SOR=0.784;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*2149T>C|||||2149|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.70+1144A>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:54:735,54,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	152402	.	T	C	905.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=32.35;SOR=0.997;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*2302T>C|||||2302|,C|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.70+991A>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:66:934,66,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold12234_cov62	153061	.	C	T	693.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.53;SOR=0.874;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold12234_cov62_149725_149825|GENE_EXON_scaffold12234_cov62_149725_149825|transcript|Soaet10008290|protein_coding||c.*2961C>T|||||2961|,T|intron_variant|MODIFIER|EXON_scaffold12234_cov62_150367_150605|GENE_EXON_scaffold12234_cov62_150367_150605|transcript|Soaet10008291|protein_coding|1/1|c.70+332G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:722,51,0	scaffold12234_cov62	GLEAN	mRNA	150367	153462	1.00	-	.	ID=Soaet10008291
scaffold15340_cov62	63531	.	GTA	G	760.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=32.50;RPA=7,6;RU=TA;SOR=1.863;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|transcript|Soaet10009286|protein_coding|2/2|c.696_697delTA|p.Ile235fs|697/768|696/768|232/255||;LOF=(EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,18:19:54:798,54,0	scaffold15340_cov62	GLEAN	mRNA	63461	64242	0.50	-	.	ID=Soaet10009286
scaffold15340_cov62	63661	.	T	G	733.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.90;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|transcript|Soaet10009286|protein_coding|2/2|c.568A>C|p.Thr190Pro|568/768|568/768|190/255||	GT:AD:DP:GQ:PL	1/1:0,23:23:54:762,54,0	scaffold15340_cov62	GLEAN	mRNA	63461	64242	0.50	-	.	ID=Soaet10009286
scaffold15340_cov62	63869	.	C	T	528.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.10;SOR=1.061;ANN=T|stop_gained|HIGH|EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|transcript|Soaet10009286|protein_coding|2/2|c.360G>A|p.Trp120*|360/768|360/768|120/255||	GT:AD:DP:GQ:PL	1/1:0,17:17:39:557,39,0	scaffold15340_cov62	GLEAN	mRNA	63461	64242	0.50	-	.	ID=Soaet10009286
scaffold15340_cov62	63872	.	A	G	517.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.46;SOR=1.061;ANN=G|synonymous_variant|LOW|EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|transcript|Soaet10009286|protein_coding|2/2|c.357T>C|p.Phe119Phe|357/768|357/768|119/255||	GT:AD:DP:GQ:PL	1/1:0,17:17:39:546,39,0	scaffold15340_cov62	GLEAN	mRNA	63461	64242	0.50	-	.	ID=Soaet10009286
scaffold15340_cov62	63884	.	C	T	460.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.91;SOR=1.329;ANN=T|stop_gained|HIGH|EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|transcript|Soaet10009286|protein_coding|2/2|c.345G>A|p.Trp115*|345/768|345/768|115/255||	GT:AD:DP:GQ:PL	1/1:0,14:14:36:489,36,0	scaffold15340_cov62	GLEAN	mRNA	63461	64242	0.50	-	.	ID=Soaet10009286
scaffold15340_cov62	64108	.	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.37;SOR=0.984;ANN=T|synonymous_variant|LOW|EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|transcript|Soaet10009286|protein_coding|1/2|c.135G>A|p.Ala45Ala|135/768|135/768|45/255||	GT:AD:DP:GQ:PL	1/1:0,37:37:78:1115,78,0	scaffold15340_cov62	GLEAN	mRNA	63461	64242	0.50	-	.	ID=Soaet10009286
scaffold15340_cov62	64221	.	A	G	916.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold15340_cov62_63461_63889|GENE_EXON_scaffold15340_cov62_63461_63889|transcript|Soaet10009286|protein_coding|1/2|c.22T>C|p.Ser8Pro|22/768|22/768|8/255||	GT:AD:DP:GQ:PL	1/1:0,30:30:66:945,66,0	scaffold15340_cov62	GLEAN	mRNA	63461	64242	0.50	-	.	ID=Soaet10009286
scaffold15340_cov62	215711	.	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=31.20;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold15340_cov62_215510_215533|GENE_EXON_scaffold15340_cov62_215510_215533|transcript|Soaet10009287|protein_coding|2/2|c.105T>C|p.Ser35Ser|105/171|105/171|35/56||	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1089,78,0	scaffold15340_cov62	GLEAN	mRNA	215510	215777	0.61	+	.	ID=Soaet10009287
scaffold18634_cov63	64237	.	C	T	615.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=2;QD=27.99;SOR=1.127;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.109C>T|p.Arg37Cys|109/32304|109/32304|37/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,20:22:45:644,45,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	64425	.	A	G	644.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SOR=1.721;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.297A>G|p.Thr99Thr|297/32304|297/32304|99/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:51:673,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	64678	.	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=32.26;SOR=1.085;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.550T>C|p.Tyr184His|550/32304|550/32304|184/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:35:81:1125,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	64937	.	A	T	784.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.07;SOR=0.765;ANN=T|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.809A>T|p.Ter270Leuext*?|809/32304|809/32304|270/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:813,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65126	.	A	G	604.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=31.83;SOR=0.793;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.998A>G|p.Glu333Gly|998/32304|998/32304|333/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:633,45,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65171	.	G	GA	639.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.67;RPA=5,6;RU=A;SOR=0.793;STR;ANN=GA|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1048dupA|p.Thr350fs|1049/32304|1049/32304|350/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME	GT:AD:DP:GQ:PL	1/1:0,19:21:57:677,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65198	.	C	G	691.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.94;SOR=0.990;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1070C>G|p.Ala357Gly|1070/32304|1070/32304|357/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:720,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65265	.	A	G	692.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.12;SOR=0.776;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1137A>G|p.Ile379Met|1137/32304|1137/32304|379/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:721,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65599	.	C	T	470.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.63;SOR=1.329;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1471C>T|p.Gln491*|1471/32304|1471/32304|491/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:499,36,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65681	.	G	A	445.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.22;SOR=0.804;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1553G>A|p.Arg518Gln|1553/32304|1553/32304|518/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,17:17:33:474,33,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65707	.	T	C	324.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SOR=0.976;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1579T>C|p.Ter527Glnext*?|1579/32304|1579/32304|527/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:24:353,24,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65743	.	A	G	494.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1615A>G|p.Thr539Ala|1615/32304|1615/32304|539/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:36:523,36,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	65834	.	C	T	702.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.667;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=5.103;QD=28.11;ReadPosRankSum=-1.531;SOR=0.495;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1706C>T|p.Thr569Ile|1706/32304|1706/32304|569/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,24:25:51:731,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66048	.	C	T	729.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.41;SOR=0.859;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.1920C>T|p.Tyr640Tyr|1920/32304|1920/32304|640/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:758,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66216	.	T	C	721.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.37;SOR=0.784;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2088T>C|p.Ile696Ile|2088/32304|2088/32304|696/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:22:54:750,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66304	.	C	T	690.81	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.605;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=3.018;QD=28.78;ReadPosRankSum=0.867;SOR=0.340;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2176C>T|p.Leu726Phe|2176/32304|2176/32304|726/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,23:24:20:719,20,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66468	.	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=1;QD=29.69;SOR=0.869;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2340A>G|p.Lys780Lys|2340/32304|2340/32304|780/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1097,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66652	.	G	A	952.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=0.880;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2524G>A|p.Gly842Arg|2524/32304|2524/32304|842/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:69:981,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66685	.	G	T	1024.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.70;SOR=0.859;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2557G>T|p.Glu853*|2557/32304|2557/32304|853/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:75:1053,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66707	.	T	G	992.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.20;SOR=0.811;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2579T>G|p.Leu860Arg|2579/32304|2579/32304|860/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:36:72:1021,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	66961	.	G	A	1296.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.4484;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=3.240;QD=25.94;ReadPosRankSum=0.416;SOR=0.239;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2833G>A|p.Gly945Arg|2833/32304|2833/32304|945/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,49:50:63:1325,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67023	.	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=28.79;SOR=0.730;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2895T>C|p.Phe965Phe|2895/32304|2895/32304|965/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1554,111,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67093	.	C	A	1026.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.040;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9969;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=6.768;QD=21.84;ReadPosRankSum=-0.665;SOR=0.743;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.2965C>A|p.Pro989Thr|2965/32304|2965/32304|989/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:8,39:48:1:1052,1,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67472	.	T	G	1000.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.27;SOR=1.284;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.3344T>G|p.Ile1115Ser|3344/32304|3344/32304|1115/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1029,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67534	.	C	A	813.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=33.91;SOR=1.270;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.3406C>A|p.Leu1136Ile|3406/32304|3406/32304|1136/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:842,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67724	.	A	G	945.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.61;SOR=0.760;ANN=G|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.3596A>G|p.Ter1199Trpext*?|3596/32304|3596/32304|1199/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:974,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67745	.	A	T	865.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.07;SOR=0.765;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.3617A>T|p.Asn1206Ile|3617/32304|3617/32304|1206/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:894,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67907	.	C	T	1368.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=31.83;SOR=1.055;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.3779C>T|p.Thr1260Ile|3779/32304|3779/32304|1260/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1397,99,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	67949	.	G	A	1255.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.88;SOR=1.547;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.3821G>A|p.Cys1274Tyr|3821/32304|3821/32304|1274/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1284,93,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68236	.	GCCCC	G	2144.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=28.37;RPA=12,8;RU=C;SOR=1.308;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4117_4120delCCCC|p.Pro1373fs|4117/32304|4117/32304|1373/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,35:43:99:2182,105,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68344	.	C	T	670.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=27.95;SOR=1.802;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4216C>T|p.Leu1406Phe|4216/32304|4216/32304|1406/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:699,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68422	.	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DP=26;Dels=0.00;ExcessHet=3.0103;FS=22.082;HaplotypeScore=8.8807;MLEAC=1;MLEAF=0.500;MQ=50.11;MQ0=1;MQRankSum=-3.344;QD=3.45;ReadPosRankSum=-1.433;SOR=3.897;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4294T>C|p.Ser1432Pro|4294/32304|4294/32304|1432/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,7:26:99:118,0,508	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68432	.	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;DP=30;Dels=0.00;ExcessHet=3.0103;FS=9.640;HaplotypeScore=2.7271;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=1;MQRankSum=-2.793;QD=4.23;ReadPosRankSum=-0.826;SOR=2.027;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4304G>A|p.Gly1435Asp|4304/32304|4304/32304|1435/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,10:30:99:155,0,488	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68489	.	G	A	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.4525;MLEAC=1;MLEAF=0.500;MQ=36.00;MQ0=1;MQRankSum=-0.307;QD=0.25;ReadPosRankSum=-0.859;SOR=0.826;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4361G>A|p.Arg1454Lys|4361/32304|4361/32304|1454/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:36,5:41:38:38,0,587	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68498	.	A	G	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.2874;MLEAC=1;MLEAF=0.500;MQ=35.19;MQ0=1;MQRankSum=-0.211;QD=0.26;ReadPosRankSum=-1.555;SOR=0.760;ANN=G|stop_retained_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4370A>G|p.Ter1457Ter|4370/32304|4370/32304|1457/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:35,5:40:38:38,0,589	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68508	.	A	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=50.1402;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=1;MQRankSum=0.519;QD=2.36;ReadPosRankSum=0.130;SOR=0.685;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4380A>T|p.Lys1460Asn|4380/32304|4380/32304|1460/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,10:41:99:125,0,487	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68509	.	A	T	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=45.3295;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=1;MQRankSum=-0.287;QD=0.39;ReadPosRankSum=-1.800;SOR=0.826;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4381A>T|p.Thr1461Ser|4381/32304|4381/32304|1461/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:36,5:41:44:44,0,505	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68510	.	C	A	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=45.3295;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=1;MQRankSum=1.600;QD=0.57;ReadPosRankSum=0.599;SOR=0.569;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4382C>A|p.Thr1461Asn|4382/32304|4382/32304|1461/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,4:41:47:47,0,453	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68514	.	A	G	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.647;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=74.8527;MLEAC=1;MLEAF=0.500;MQ=33.23;MQ0=1;MQRankSum=2.146;QD=0.62;ReadPosRankSum=1.284;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4386A>G|p.Gln1462Gln|4386/32304|4386/32304|1462/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,4:35:50:50,0,440	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68516	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=75.3208;MLEAC=1;MLEAF=0.500;MQ=33.23;MQ0=1;MQRankSum=0.281;QD=4.39;ReadPosRankSum=-1.033;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4388G>A|p.Cys1463Tyr|4388/32304|4388/32304|1463/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:182,0,308	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68523	.	A	G	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=24.3830;MLEAC=1;MLEAF=0.500;MQ=33.23;MQ0=1;MQRankSum=2.146;QD=0.62;ReadPosRankSum=1.766;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4395A>G|p.Ser1465Ser|4395/32304|4395/32304|1465/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,4:35:50:50,0,440	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68539	.	G	T	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9356;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=0;MQRankSum=1.194;QD=0.51;ReadPosRankSum=-0.846;SOR=1.012;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4411G>T|p.Val1471Leu|4411/32304|4411/32304|1471/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,3:33:45:45,0,426	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68546	.	C	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.2775;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=0;MQRankSum=1.194;QD=0.51;ReadPosRankSum=-1.065;SOR=1.012;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4418C>A|p.Pro1473His|4418/32304|4418/32304|1473/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,3:33:45:45,0,423	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68553	.	T	C	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=37.2611;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=2.030;QD=0.75;ReadPosRankSum=0.728;SOR=0.297;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4425T>C|p.Cys1475Cys|4425/32304|4425/32304|1475/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,4:29:50:50,0,398	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68556	.	G	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=37.2611;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=-0.571;QD=0.84;ReadPosRankSum=2.135;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4428G>T|p.Lys1476Asn|4428/32304|4428/32304|1476/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,4:29:50:50,0,363	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68560	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=43.1919;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=-0.739;QD=0.91;ReadPosRankSum=2.326;SOR=1.071;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4432C>T|p.Pro1478Ser|4432/32304|4432/32304|1478/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:29:50:50,0,363	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68562	.	T	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=48.0026;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=1.125;QD=2.51;ReadPosRankSum=-1.148;SOR=0.892;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4434T>G|p.Pro1478Pro|4434/32304|4434/32304|1478/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,7:29:99:101,0,348	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68571	.	A	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.2270;MLEAC=1;MLEAF=0.500;MQ=32.42;MQ0=0;MQRankSum=-0.137;QD=0.81;ReadPosRankSum=2.254;SOR=0.818;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4443A>T|p.Pro1481Pro|4443/32304|4443/32304|1481/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,4:27:50:50,0,358	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68581	.	C	G	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.161;HaplotypeScore=5.7896;MLEAC=1;MLEAF=0.500;MQ=34.13;MQ0=0;MQRankSum=1.105;QD=1.03;ReadPosRankSum=-1.032;SOR=0.250;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4453C>G|p.Leu1485Val|4453/32304|4453/32304|1485/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,5:24:53:53,0,327	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68591	.	T	A	363.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6425;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=18.19;SOR=2.093;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4463T>A|p.Val1488Asp|4463/32304|4463/32304|1488/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:30:392,30,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68593	.	C	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.4467;MLEAC=1;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=1.328;QD=1.39;ReadPosRankSum=-0.955;SOR=0.252;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4465C>T|p.His1489Tyr|4465/32304|4465/32304|1489/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,3:20:56:56,0,278	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68603	.	A	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.6984;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-0.016;QD=11.21;ReadPosRankSum=0.224;SOR=1.802;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4475A>T|p.Lys1492Ile|4475/32304|4475/32304|1492/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,9:13:65:174,0,65	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68611	.	A	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6437;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=0.016;QD=3.06;ReadPosRankSum=-0.224;SOR=0.180;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4483A>C|p.Asn1495His|4483/32304|4483/32304|1495/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,4:13:68:68,0,134	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68658	.	A	C	15.65	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=0;MQRankSum=0.967;QD=5.22;ReadPosRankSum=0.967;SOR=0.368;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4530A>C|p.Ter1510Cysext*?|4530/32304|4530/32304|1510/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,1:3:3:42,3,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68671	.	G	T	15.65	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;MQRankSum=0.674;QD=7.83;ReadPosRankSum=0.674;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4543G>T|p.Ala1515Ser|4543/32304|4543/32304|1515/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,1:2:3:42,3,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68676	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4548C>T|p.Tyr1516Tyr|4548/32304|4548/32304|1516/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68821	.	C	T	566.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=1;QD=29.83;SOR=0.914;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4693C>T|p.Pro1565Ser|4693/32304|4693/32304|1565/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:595,42,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	68896	.	C	A	654.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.47;SOR=0.776;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.4768C>A|p.Gln1590Lys|4768/32304|4768/32304|1590/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:683,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69157	.	T	C	573.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.69;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5029T>C|p.Ser1677Pro|5029/32304|5029/32304|1677/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:42:602,42,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69197	.	C	T	438.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.25;SOR=1.112;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5069C>T|p.Ser1690Leu|5069/32304|5069/32304|1690/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:467,33,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69270	.	G	A	482.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.41;SOR=1.022;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5142G>A|p.Leu1714Leu|5142/32304|5142/32304|1714/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:36:511,36,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69295	.	T	C	530.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.13;SOR=0.874;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5167T>C|p.Ter1723Argext*?|5167/32304|5167/32304|1723/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:39:559,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69538	.	T	C	982.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.833;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=4.971;QD=27.30;ReadPosRankSum=-1.520;SOR=1.418;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5410T>C|p.Tyr1804His|5410/32304|5410/32304|1804/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,34:36:34:1011,34,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69616	.	G	T	1373.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.390;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=6.042;QD=28.62;ReadPosRankSum=0.085;SOR=0.395;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5488G>T|p.Ala1830Ser|5488/32304|5488/32304|1830/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:3,45:48:80:1402,80,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69892	.	G	A	972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.38;ReadPosRankSum=-0.503;SOR=0.223;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5764G>A|p.Val1922Ile|5764/32304|5764/32304|1922/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,30:31:72:1001,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	69970	.	C	T	776.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.88;SOR=0.846;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5842C>T|p.Pro1948Ser|5842/32304|5842/32304|1948/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:805,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	70093	.	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4522;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.40;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.5965A>G|p.Ile1989Val|5965/32304|5965/32304|1989/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,42:42:93:1305,93,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	70204	.	C	T	921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.912;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.73;ReadPosRankSum=0.694;SOR=0.602;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.6076C>T|p.Arg2026Cys|6076/32304|6076/32304|2026/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,29:30:69:950,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	70251	.	A	G	625.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.94;SOR=1.292;ANN=G|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.6123A>G|p.Ter2041Trpext*?|6123/32304|6123/32304|2041/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:48:654,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	70482	.	C	A	1102.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.80;SOR=1.121;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.6354C>A|p.Asp2118Glu|6354/32304|6354/32304|2118/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1131,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	70684	.	A	G	817.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=32.71;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.6556A>G|p.Ile2186Val|6556/32304|6556/32304|2186/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:846,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	70786	.	T	C	501.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.36;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.6658T>C|p.Cys2220Arg|6658/32304|6658/32304|2220/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:39:530,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	70950	.	A	G	822.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.91;SOR=0.770;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.6822A>G|p.Gly2274Gly|6822/32304|6822/32304|2274/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:851,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71568	.	G	A	1058.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.54;SOR=0.976;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7440G>A|p.Glu2480Glu|7440/32304|7440/32304|2480/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1087,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71614	.	G	A	775.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.73;SOR=0.765;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7486G>A|p.Val2496Ile|7486/32304|7486/32304|2496/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:804,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71621	.	C	A	865.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.30;SOR=0.846;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7493C>A|p.Thr2498Lys|7493/32304|7493/32304|2498/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:894,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71693	.	A	G	945.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=27.82;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7565A>G|p.Asp2522Gly|7565/32304|7565/32304|2522/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:69:974,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71700	.	C	G	907.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.26;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7572C>G|p.Asn2524Lys|7572/32304|7572/32304|2524/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:936,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71703	.	G	A	878.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.38;SOR=0.836;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7575G>A|p.Pro2525Pro|7575/32304|7575/32304|2525/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:907,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71708	.	T	A	821.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.35;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7580T>A|p.Ile2527Asn|7580/32304|7580/32304|2527/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:850,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71875	.	G	A	737.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.51;SOR=1.136;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7747G>A|p.Ala2583Thr|7747/32304|7747/32304|2583/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:766,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71893	.	T	G	649.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.25;SOR=0.963;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7765T>G|p.Tyr2589Asp|7765/32304|7765/32304|2589/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:678,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	71969	.	G	C	476.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.05;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7841G>C|p.Arg2614Thr|7841/32304|7841/32304|2614/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:36:505,36,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72080	.	A	G	828.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.58;SOR=0.760;ANN=G|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.7952A>G|p.Ter2651Trpext*?|7952/32304|7952/32304|2651/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:60:857,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72222	.	G	A	584.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=32.49;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8094G>A|p.Lys2698Lys|8094/32304|8094/32304|2698/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:613,45,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72230	.	C	T	518.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=27.30;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8102C>T|p.Thr2701Ile|8102/32304|8102/32304|2701/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:547,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72483	.	A	T	983.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SOR=1.112;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8355A>T|p.Leu2785Leu|8355/32304|8355/32304|2785/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1012,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72615	.	C	T	766.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=33.34;SOR=0.963;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8487C>T|p.His2829His|8487/32304|8487/32304|2829/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:795,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72718	.	C	A	403.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=33.65;SOR=1.445;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8590C>A|p.Arg2864Arg|8590/32304|8590/32304|2864/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,12:12:33:432,33,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72769	.	G	A	402.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=1.337;QD=26.85;ReadPosRankSum=-0.590;SOR=1.108;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8641G>A|p.Gly2881Arg|8641/32304|8641/32304|2881/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,14:15:33:431,33,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72772	.	T	C	455.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=30.38;SOR=1.112;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8644T>C|p.Ter2882Glnext*?|8644/32304|8644/32304|2882/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:484,36,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72814	.	A	G	515.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=27.15;SOR=0.793;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8686A>G|p.Lys2896Glu|8686/32304|8686/32304|2896/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:544,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72815	.	A	G	506.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=26.67;SOR=0.793;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8687A>G|p.Lys2896Arg|8687/32304|8687/32304|2896/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:535,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	72862	.	A	T	709.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.30;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8734A>T|p.Ser2912Cys|8734/32304|8734/32304|2912/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:51:738,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73004	.	G	T	1072.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.55;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8876G>T|p.Arg2959Ile|8876/32304|8876/32304|2959/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1101,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73015	.	G	T	1032.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.30;SOR=0.880;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.8887G>T|p.Ala2963Ser|8887/32304|8887/32304|2963/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1061,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73330	.	A	G	852.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.41;SOR=0.760;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9202A>G|p.Thr3068Ala|9202/32304|9202/32304|3068/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:881,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73501	.	T	C	1106.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=2;QD=29.91;SOR=0.859;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9373T>C|p.Tyr3125His|9373/32304|9373/32304|3125/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:39:81:1135,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73507	.	T	C	882.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=2;MQRankSum=6.036;QD=22.62;ReadPosRankSum=-0.024;SOR=0.752;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9379T>C|p.Ter3127Glnext*?|9379/32304|9379/32304|3127/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,33:39:10:910,0,10	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73557	.	T	C	929.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.350;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9577;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=1;MQRankSum=5.660;QD=29.06;ReadPosRankSum=1.063;SOR=0.223;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9429T>C|p.Ala3143Ala|9429/32304|9429/32304|3143/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,30:32:50:958,50,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73628	.	C	G	796.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.64;SOR=0.846;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9500C>G|p.Ser3167Cys|9500/32304|9500/32304|3167/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:825,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	73742	.	A	T	757.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.44;SOR=0.874;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9614A>T|p.Asn3205Ile|9614/32304|9614/32304|3205/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:786,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74003	.	G	A	799.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.76;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9875G>A|p.Arg3292Lys|9875/32304|9875/32304|3292/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:828,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74105	.	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.11;SOR=0.880;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9977G>A|p.Cys3326Tyr|9977/32304|9977/32304|3326/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1154,84,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74118	.	T	TTA	1734.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.22;SOR=0.818;ANN=TTA|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.9990_9991insTA|p.Leu3331fs|9991/32304|9991/32304|3331/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1772,96,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74269	.	C	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4865;MLEAC=1;MLEAF=0.500;MQ=55.82;MQ0=0;MQRankSum=-5.740;QD=2.74;ReadPosRankSum=-0.123;SOR=1.035;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10141C>T|p.Pro3381Ser|10141/32304|10141/32304|3381/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,11:44:99:149,0,855	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74271	.	G	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.379;HaplotypeScore=10.3602;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=-5.950;QD=2.29;ReadPosRankSum=0.994;SOR=1.189;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10143G>T|p.Pro3381Pro|10143/32304|10143/32304|3381/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,11:45:99:129,0,921	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74305	.	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.684;HaplotypeScore=24.7614;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-5.173;QD=1.51;ReadPosRankSum=3.572;SOR=1.270;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10177T>C|p.Ser3393Pro|10177/32304|10177/32304|3393/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,7:42:90:90,0,915	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74306	.	C	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=25.6772;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-5.294;QD=2.34;ReadPosRankSum=3.458;SOR=1.402;ANN=A|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10178C>A|p.Ser3393*|10178/32304|10178/32304|3393/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,8:42:99:124,0,919	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74320	.	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.316;HaplotypeScore=25.9356;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=-5.106;QD=2.24;ReadPosRankSum=1.376;SOR=1.863;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10192T>C|p.Cys3398Arg|10192/32304|10192/32304|3398/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,5:35:99:100,0,706	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74324	.	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.629;HaplotypeScore=23.1880;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-5.419;QD=1.96;ReadPosRankSum=2.147;SOR=2.187;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10196G>A|p.Gly3399Glu|10196/32304|10196/32304|3399/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,6:36:97:97,0,753	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74328	.	T	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.302;HaplotypeScore=22.4412;MLEAC=1;MLEAF=0.500;MQ=57.24;MQ0=0;MQRankSum=-5.654;QD=1.63;ReadPosRankSum=1.482;SOR=1.888;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10200T>A|p.Ser3400Arg|10200/32304|10200/32304|3400/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,6:38:90:90,0,776	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74332	.	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.247;HaplotypeScore=17.0312;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=-5.426;QD=1.85;ReadPosRankSum=0.092;SOR=1.675;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10204G>A|p.Val3402Ile|10204/32304|10204/32304|3402/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,5:37:95:95,0,759	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74333	.	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.247;HaplotypeScore=16.0734;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=-5.426;QD=1.83;ReadPosRankSum=-0.069;SOR=1.675;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10205T>C|p.Val3402Ala|10205/32304|10205/32304|3402/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,5:37:94:94,0,766	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74335	.	A	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.013;HaplotypeScore=14.2836;MLEAC=1;MLEAF=0.500;MQ=56.42;MQ0=0;MQRankSum=-4.843;QD=1.37;ReadPosRankSum=-0.311;SOR=1.588;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10207A>T|p.Thr3403Ser|10207/32304|10207/32304|3403/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,5:38:79:79,0,894	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74349	.	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.010;HaplotypeScore=16.1573;MLEAC=1;MLEAF=0.500;MQ=56.52;MQ0=0;MQRankSum=-4.918;QD=1.57;ReadPosRankSum=-1.383;SOR=1.508;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10221T>C|p.Asp3407Asp|10221/32304|10221/32304|3407/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,5:39:88:88,0,799	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74365	.	G	A	883.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.043;HaplotypeScore=4.7867;MLEAC=1;MLEAF=0.500;MQ=57.27;MQ0=0;MQRankSum=4.852;QD=25.23;ReadPosRankSum=1.770;SOR=0.096;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10237G>A|p.Gly3413Arg|10237/32304|10237/32304|3413/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:3,32:36:4:910,0,4	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74530	.	T	C	892.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.34;SOR=0.846;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10402T>C|p.Ter3468Glnext*?|10402/32304|10402/32304|3468/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:921,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74712	.	A	C	1276.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.69;SOR=0.739;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10584A>C|p.Arg3528Ser|10584/32304|10584/32304|3528/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:96:1305,96,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74797	.	A	G	1098.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.52;ReadPosRankSum=0.241;SOR=0.246;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10669A>G|p.Lys3557Glu|10669/32304|10669/32304|3557/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,35:37:81:1127,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	74889	.	A	C	721.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10761A>C|p.Thr3587Thr|10761/32304|10761/32304|3587/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:54:750,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75009	.	C	T	1108.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.43;SOR=0.743;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10881C>T|p.Ser3627Ser|10881/32304|10881/32304|3627/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,39:39:81:1137,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75056	.	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.76;SOR=0.811;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10928C>T|p.Ser3643Leu|10928/32304|10928/32304|3643/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1040,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75064	.	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.63;SOR=0.752;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10936T>C|p.Phe3646Leu|10936/32304|10936/32304|3646/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1105,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75096	.	C	G	959.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.21;SOR=0.846;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.10968C>G|p.Pro3656Pro|10968/32304|10968/32304|3656/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:72:988,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75318	.	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.508;HaplotypeScore=3.8315;MLEAC=1;MLEAF=0.500;MQ=55.01;MQ0=0;MQRankSum=-4.373;QD=2.28;ReadPosRankSum=1.106;SOR=0.943;ANN=G|stop_retained_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11190A>G|p.Ter3730Ter|11190/32304|11190/32304|3730/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,8:31:99:99,0,689	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75332	.	A	C	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.378;HaplotypeScore=4.6634;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=-3.715;QD=0.62;ReadPosRankSum=1.063;SOR=1.162;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11204A>C|p.Lys3735Thr|11204/32304|11204/32304|3735/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,6:32:48:48,0,807	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75352	.	G	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=-2.999;QD=1.28;ReadPosRankSum=2.017;SOR=0.527;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11224G>C|p.Val3742Leu|11224/32304|11224/32304|3742/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:25:59:59,0,626	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75353	.	T	C	29.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=-2.721;QD=1.19;ReadPosRankSum=1.966;SOR=0.610;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11225T>C|p.Val3742Ala|11225/32304|11225/32304|3742/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,4:25:58:58,0,640	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75371	.	T	G	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.93;MQ0=0;MQRankSum=-2.573;QD=1.12;ReadPosRankSum=2.353;SOR=0.446;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11243T>G|p.Leu3748Arg|11243/32304|11243/32304|3748/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,4:23:54:54,0,617	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75382	.	G	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=4.7472;MLEAC=1;MLEAF=0.500;MQ=54.84;MQ0=0;MQRankSum=-3.309;QD=1.67;ReadPosRankSum=0.673;SOR=1.329;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11254G>T|p.Gly3752*|11254/32304|11254/32304|3752/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,6:28:75:75,0,609	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75387	.	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8309;MLEAC=1;MLEAF=0.500;MQ=54.84;MQ0=0;MQRankSum=-3.505;QD=1.29;ReadPosRankSum=0.642;SOR=1.204;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11259T>A|p.Phe3753Leu|11259/32304|11259/32304|3753/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:28:63:63,0,591	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75395	.	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9151;MLEAC=1;MLEAF=0.500;MQ=54.72;MQ0=0;MQRankSum=-3.874;QD=2.84;ReadPosRankSum=0.332;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11267G>A|p.Arg3756Lys|11267/32304|11267/32304|3756/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,7:27:99:105,0,589	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75401	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9155;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=-3.314;QD=1.76;ReadPosRankSum=-0.701;SOR=1.075;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11273G>A|p.Gly3758Asp|11273/32304|11273/32304|3758/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,6:26:74:74,0,596	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75405	.	A	C,T	729.77	.	AC=1,1;AF=0.500,0.500;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.51;MQ0=0;QD=28.07;SOR=1.022;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11277A>C|p.Ter3759Tyrext*?|11277/32304|11277/32304|3759/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11277A>T|p.Ter3759Tyrext*?|11277/32304|11277/32304|3759/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/2:0,20,6:26:75:758,123,75,635,0,626	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75446	.	T	C	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=0;MQRankSum=3.585;QD=20.87;ReadPosRankSum=0.340;SOR=0.446;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11318T>C|p.Val3773Ala|11318/32304|11318/32304|3773/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,20:25:99:550,0,103	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75448	.	G	T	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=0;MQRankSum=3.585;QD=20.87;ReadPosRankSum=0.238;SOR=0.446;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11320G>T|p.Val3774Phe|11320/32304|11320/32304|3774/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,20:25:99:550,0,99	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75449	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.251;HaplotypeScore=2.9156;MLEAC=1;MLEAF=0.500;MQ=56.01;MQ0=0;MQRankSum=-3.003;QD=1.36;ReadPosRankSum=-0.068;SOR=1.579;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11321T>C|p.Val3774Ala|11321/32304|11321/32304|3774/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,4:27:65:65,0,614	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75455	.	T	C	671.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=2.9156;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=3.417;QD=24.89;ReadPosRankSum=-1.483;SOR=0.515;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11327T>C|p.Leu3776Pro|11327/32304|11327/32304|3776/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,25:27:15:700,0,15	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75469	.	G	A	798.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.6551;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=3.092;QD=25.77;ReadPosRankSum=1.368;SOR=0.760;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11341G>A|p.Ala3781Thr|11341/32304|11341/32304|3781/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,29:31:21:827,21,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75571	.	T	A	856.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.77;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11443T>A|p.Ser3815Thr|11443/32304|11443/32304|3815/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:63:885,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75594	.	C	A	650.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.615;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=5.295;QD=24.08;ReadPosRankSum=0.964;SOR=0.223;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11466C>A|p.Asp3822Glu|11466/32304|11466/32304|3822/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,26:27:12:678,12,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75596	.	G	A	667.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=26.71;SOR=0.770;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11468G>A|p.Cys3823Tyr|11468/32304|11468/32304|3823/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:26:48:696,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75782	.	G	A	509.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.962;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=4.588;QD=25.49;ReadPosRankSum=-0.870;SOR=0.368;ANN=A|stop_retained_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11654G>A|p.Ter3885Ter|11654/32304|11654/32304|3885/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,19:20:39:538,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75795	.	T	G	518.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.94;SOR=1.402;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11667T>G|p.Asp3889Glu|11667/32304|11667/32304|3889/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:39:547,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	75873	.	C	T	433.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.11;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.11745C>T|p.Val3915Val|11745/32304|11745/32304|3915/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:462,33,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76144	.	C	T	634.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=28.85;SOR=1.085;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12016C>T|p.Leu4006Leu|12016/32304|12016/32304|4006/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:663,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76145	.	T	C	638.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=29.03;SOR=1.085;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12017T>C|p.Leu4006Pro|12017/32304|12017/32304|4006/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:667,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76146	.	A	G	647.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=29.44;SOR=1.085;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12018A>G|p.Leu4006Leu|12018/32304|12018/32304|4006/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:676,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76183	.	C	T	626.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=28.49;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12055C>T|p.His4019Tyr|12055/32304|12055/32304|4019/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:655,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76195	.	T	C	585.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=29.29;SOR=1.721;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12067T>C|p.Ter4023Argext*?|12067/32304|12067/32304|4023/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:614,45,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76291	.	C	T	414.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=25.92;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12163C>T|p.Arg4055Cys|12163/32304|12163/32304|4055/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:443,33,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76337	.	C	T	326.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=1.754;QD=21.79;ReadPosRankSum=1.105;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12209C>T|p.Pro4070Leu|12209/32304|12209/32304|4070/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,13:15:15:355,0,15	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76481	.	G	A	690.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.40;ReadPosRankSum=1.736;SOR=0.260;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12353G>A|p.Gly4118Glu|12353/32304|12353/32304|4118/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,21:22:53:719,53,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76486	.	A	C	698.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.76;ReadPosRankSum=1.419;SOR=0.260;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12358A>C|p.Thr4120Pro|12358/32304|12358/32304|4120/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,21:22:53:727,53,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76717	.	G	A	752.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=34.22;SOR=1.329;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12589G>A|p.Val4197Ile|12589/32304|12589/32304|4197/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:781,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	76890	.	C	T	805.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.800;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.99;ReadPosRankSum=-0.783;SOR=0.346;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12762C>T|p.Gly4254Gly|12762/32304|12762/32304|4254/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,30:31:24:834,24,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	77020	.	A	G	762.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.51;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.12892A>G|p.Thr4298Ala|12892/32304|12892/32304|4298/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:57:791,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	77288	.	A	G	890.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.81;SOR=0.836;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.13160A>G|p.Tyr4387Cys|13160/32304|13160/32304|4387/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:919,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	77744	.	T	C	851.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.42;SOR=0.997;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.13616T>C|p.Leu4539Pro|13616/32304|13616/32304|4539/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:880,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	77920	.	AT	A	1074.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=32.57;RPA=8,7;RU=T;SOR=0.752;STR;ANN=A|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.13800delT|p.Phe4600fs|13800/32304|13800/32304|4600/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,33:34:99:1112,99,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	77964	.	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.97;SOR=0.859;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.13836A>G|p.Val4612Val|13836/32304|13836/32304|4612/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1248,90,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78035	.	A	G	983.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.79;SOR=0.976;ANN=G|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.13907A>G|p.Ter4636Trpext*?|13907/32304|13907/32304|4636/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:1012,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78197	.	T	G	1401.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.82;SOR=0.823;ANN=G|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14069T>G|p.Leu4690*|14069/32304|14069/32304|4690/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1430,102,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78306	.	C	A	1313.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.55;SOR=1.055;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14178C>A|p.Ile4726Ile|14178/32304|14178/32304|4726/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1342,99,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78354	.	T	C	1053.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.93;SOR=0.957;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14226T>C|p.His4742His|14226/32304|14226/32304|4742/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1082,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78475	.	G	A	1264.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.983;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=6.606;QD=28.74;ReadPosRankSum=-0.652;SOR=0.433;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14347G>A|p.Glu4783Lys|14347/32304|14347/32304|4783/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:3,41:44:55:1293,55,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78511	.	T	C	1284.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.118;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=6.606;QD=29.20;ReadPosRankSum=0.233;SOR=0.536;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14383T>C|p.Phe4795Leu|14383/32304|14383/32304|4795/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:3,41:44:55:1313,55,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78548	.	A	C	1305.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.259;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8309;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=6.709;QD=29.02;ReadPosRankSum=0.275;SOR=1.055;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14420A>C|p.Glu4807Ala|14420/32304|14420/32304|4807/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,43:45:61:1334,61,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78556	.	T	C	1368.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.921;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8309;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.109;QD=31.11;ReadPosRankSum=0.473;SOR=0.330;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14428T>C|p.Ter4810Argext*?|14428/32304|14428/32304|4810/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,43:44:69:1397,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78571	.	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.69;SOR=0.793;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14443A>G|p.Ile4815Val|14443/32304|14443/32304|4815/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1296,93,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78616	.	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=33.97;SOR=0.968;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14488C>T|p.Gln4830*|14488/32304|14488/32304|4830/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,39:39:96:1353,96,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78752	.	G	A	1808.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.521;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2011;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=5.659;QD=29.17;ReadPosRankSum=-1.677;SOR=0.274;ANN=A|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14624G>A|p.Trp4875*|14624/32304|14624/32304|4875/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1837,132,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	78960	.	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.31;SOR=1.148;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14832T>C|p.Thr4944Thr|14832/32304|14832/32304|4944/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1089,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	79125	.	A	G	794.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=28.38;SOR=0.836;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.14997A>G|p.Gly4999Gly|14997/32304|14997/32304|4999/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:57:823,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	79622	.	A	C	1038.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.85;SOR=0.927;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.15494A>C|p.Gln5165Pro|15494/32304|15494/32304|5165/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:75:1067,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	79989	.	A	G	691.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.94;SOR=0.990;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.15861A>G|p.Ile5287Met|15861/32304|15861/32304|5287/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:720,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80026	.	G	T	667.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.03;SOR=0.963;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.15898G>T|p.Gly5300*|15898/32304|15898/32304|5300/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:696,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80144	.	T	G	765.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.29;SOR=0.963;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16016T>G|p.Leu5339Trp|16016/32304|16016/32304|5339/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:794,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80436	.	C	T	850.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.38;SOR=0.836;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16308C>T|p.Ile5436Ile|16308/32304|16308/32304|5436/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:879,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80490	.	C	T	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=32;Dels=0.00;ExcessHet=3.0103;FS=6.105;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=-5.496;QD=0.53;ReadPosRankSum=-2.458;SOR=2.712;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16362C>T|p.Ser5454Ser|16362/32304|16362/32304|5454/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,3:32:45:45,0,802	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80492	.	A	G	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.968;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-5.586;QD=0.42;ReadPosRankSum=-2.224;SOR=2.599;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16364A>G|p.Lys5455Arg|16364/32304|16364/32304|5455/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,3:33:42:42,0,857	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80546	.	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2429;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-4.569;QD=3.49;ReadPosRankSum=0.806;SOR=0.976;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16418T>C|p.Met5473Thr|16418/32304|16418/32304|5473/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,8:32:99:140,0,727	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80562	.	C	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-4.569;QD=3.49;ReadPosRankSum=2.504;SOR=0.976;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16434C>A|p.Thr5478Thr|16434/32304|16434/32304|5478/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,8:32:99:140,0,740	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80567	.	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.37;MQ0=0;MQRankSum=-4.397;QD=3.83;ReadPosRankSum=2.512;SOR=0.765;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16439G>A|p.Arg5480Gln|16439/32304|16439/32304|5480/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,8:31:99:143,0,679	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80575	.	A	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=-4.807;QD=3.26;ReadPosRankSum=2.363;SOR=0.404;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16447A>C|p.Lys5483Gln|16447/32304|16447/32304|5483/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,9:34:99:139,0,792	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80603	.	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.529;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-5.024;QD=3.35;ReadPosRankSum=0.848;SOR=0.202;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16475T>G|p.Val5492Gly|16475/32304|16475/32304|5492/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,10:36:99:149,0,739	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80608	.	C	A	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.482;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=0;MQRankSum=5.233;QD=21.39;ReadPosRankSum=-0.713;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16480C>A|p.Gln5494Lys|16480/32304|16480/32304|5494/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,28:38:99:841,0,140	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80632	.	T	C	1188.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9910;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=31.28;SOR=0.914;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16504T>C|p.Leu5502Leu|16504/32304|16504/32304|5502/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1217,87,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80636	.	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=6.9910;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=-4.088;QD=2.21;ReadPosRankSum=0.253;SOR=1.552;ANN=A|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16508G>A|p.Trp5503*|16508/32304|16508/32304|5503/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:35,7:42:99:121,0,918	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80647	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.149;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-4.253;QD=1.86;ReadPosRankSum=-0.047;SOR=1.541;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16519G>A|p.Asp5507Asn|16519/32304|16519/32304|5507/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,7:45:99:112,0,1083	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80649	.	T	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.424;HaplotypeScore=3.9154;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-5.715;QD=3.75;ReadPosRankSum=-0.724;SOR=0.987;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16521T>G|p.Asp5507Glu|16521/32304|16521/32304|5507/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:35,10:45:99:197,0,1016	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80651	.	G	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.830;HaplotypeScore=4.8313;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-4.253;QD=1.77;ReadPosRankSum=-0.815;SOR=1.572;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16523G>C|p.Trp5508Ser|16523/32304|16523/32304|5508/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,7:45:99:108,0,1121	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80664	.	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.623;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.68;MQ0=0;MQRankSum=-5.219;QD=0.74;ReadPosRankSum=-0.701;SOR=1.956;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16536T>C|p.Tyr5512Tyr|16536/32304|16536/32304|5512/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,5:43:60:60,0,1087	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80822	.	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7365;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=31.46;SOR=0.741;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16694A>G|p.Gln5565Arg|16694/32304|16694/32304|5565/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1318,96,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80952	.	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.819;QD=15.68;ReadPosRankSum=-1.808;SOR=0.859;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16824G>A|p.Gln5608Gln|16824/32304|16824/32304|5608/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:530,0,428	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	80987	.	A	G	980.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=31.64;SOR=0.756;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16859A>G|p.Tyr5620Cys|16859/32304|16859/32304|5620/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1009,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81092	.	G	T	656.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=31.27;SOR=0.784;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.16964G>T|p.Ser5655Ile|16964/32304|16964/32304|5655/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:685,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81244	.	C	T	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DP=21;Dels=0.00;ExcessHet=3.0103;FS=10.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=0;MQRankSum=-2.452;QD=1.28;ReadPosRankSum=-0.755;SOR=2.800;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17116C>T|p.Gln5706*|17116/32304|17116/32304|5706/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,3:21:55:55,0,500	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81286	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.07;MQ0=0;MQRankSum=-2.758;QD=1.18;ReadPosRankSum=1.077;SOR=1.445;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17158G>A|p.Gly5720Ser|17158/32304|17158/32304|5720/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,4:21:53:53,0,498	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81287	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.086;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.07;MQ0=0;MQRankSum=-2.758;QD=2.51;ReadPosRankSum=1.121;SOR=1.445;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17159G>A|p.Gly5720Asp|17159/32304|17159/32304|5720/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,4:21:81:81,0,488	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81294	.	G	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=51.05;MQ0=0;MQRankSum=-3.256;QD=2.62;ReadPosRankSum=0.854;SOR=0.904;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17166G>C|p.Met5722Ile|17166/32304|17166/32304|5722/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,5:24:91:91,0,545	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81308	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-3.684;QD=2.32;ReadPosRankSum=0.584;SOR=0.346;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17180C>T|p.Pro5727Leu|17180/32304|17180/32304|5727/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:27:91:91,0,574	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81316	.	A	C	789.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=29.25;SOR=1.302;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17188A>C|p.Met5730Leu|17188/32304|17188/32304|5730/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:818,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81339	.	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.298;HaplotypeScore=7.4784;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=0;MQRankSum=-4.618;QD=1.26;ReadPosRankSum=0.294;SOR=0.579;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17211G>A|p.Leu5737Leu|17211/32304|17211/32304|5737/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,7:30:66:66,0,692	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81370	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.022;HaplotypeScore=5.3133;MLEAC=1;MLEAF=0.500;MQ=54.26;MQ0=0;MQRankSum=-3.873;QD=1.11;ReadPosRankSum=1.058;SOR=0.684;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17242T>C|p.Ter5748Glnext*?|17242/32304|17242/32304|5748/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,7:33:65:65,0,735	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81391	.	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=33;Dels=0.00;ExcessHet=3.0103;FS=4.857;HaplotypeScore=6.0473;MLEAC=1;MLEAF=0.500;MQ=54.91;MQ0=0;MQRankSum=-5.495;QD=1.15;ReadPosRankSum=-0.217;SOR=1.099;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17263A>G|p.Ile5755Val|17263/32304|17263/32304|5755/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,6:33:65:65,0,752	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81429	.	C	T	722.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.235;QD=26.77;ReadPosRankSum=1.670;SOR=0.223;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17301C>T|p.Asn5767Asn|17301/32304|17301/32304|5767/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,26:27:54:751,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81503	.	G	T	1059.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.22;SOR=0.976;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17375G>T|p.Cys5792Phe|17375/32304|17375/32304|5792/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1088,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81525	.	T	C	930.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.47;SOR=0.765;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17397T>C|p.Asn5799Asn|17397/32304|17397/32304|5799/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:959,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81719	.	C	T	664.1	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2155;MLEAC=1;MLEAF=0.500;MQ=55.74;MQ0=0;MQRankSum=5.015;QD=25.54;ReadPosRankSum=2.216;SOR=0.859;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17591C>T|p.Ala5864Val|17591/32304|17591/32304|5864/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,21:26:11:692,0,11	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	81986	.	G	A	899.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=1;QD=32.13;SOR=0.922;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17858G>A|p.Cys5953Tyr|17858/32304|17858/32304|5953/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,27:28:66:928,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	82116	.	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.22;SOR=1.214;ANN=G|stop_retained_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.17988A>G|p.Ter5996Ter|17988/32304|17988/32304|5996/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1058,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	82291	.	G	A	1090.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.09;SOR=1.473;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.18163G>A|p.Glu6055Lys|18163/32304|18163/32304|6055/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1119,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	82586	.	G	T	768.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=32.03;SOR=1.270;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.18458G>T|p.Cys6153Phe|18458/32304|18458/32304|6153/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:25:57:797,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	82632	.	A	G	714.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=34.04;SOR=1.230;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.18504A>G|p.Ser6168Ser|18504/32304|18504/32304|6168/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:743,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	82718	.	C	T	553.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.61;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.18590C>T|p.Thr6197Ile|18590/32304|18590/32304|6197/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:582,42,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	82726	.	C	G	561.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.18598C>G|p.Arg6200Gly|18598/32304|18598/32304|6200/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:42:590,42,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	82952	.	C	T	643.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.75;SOR=0.770;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.18824C>T|p.Ala6275Val|18824/32304|18824/32304|6275/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:51:672,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83136	.	A	G	821.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=29.35;SOR=0.693;ANN=G|stop_retained_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19008A>G|p.Ter6336Ter|19008/32304|19008/32304|6336/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:850,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83219	.	A	G	718.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=1;QD=29.95;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19091A>G|p.Asp6364Gly|19091/32304|19091/32304|6364/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:54:747,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83281	.	C	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.63;MQ0=1;MQRankSum=-4.596;QD=0.43;ReadPosRankSum=0.896;SOR=0.895;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19153C>T|p.Gln6385*|19153/32304|19153/32304|6385/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,6:24:38:38,0,577	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83287	.	G	A	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=1;MQRankSum=-4.011;QD=0.43;ReadPosRankSum=0.709;SOR=0.895;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19159G>A|p.Ala6387Thr|19159/32304|19159/32304|6387/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,6:24:38:38,0,570	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83389	.	G	GACTGTTTTTGA	2651.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=31.44;SOR=1.179;ANN=GACTGTTTTTGA|frameshift_variant&stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19264_19265insGTTTTTGAACT|p.Tyr6422fs|19265/32304|19265/32304|6422/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,23:24:69:2689,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83393	.	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=-1.135;QD=2.95;ReadPosRankSum=-1.954;SOR=0.719;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19265A>G|p.Tyr6422Cys|19265/32304|19265/32304|6422/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,5:26:99:105,0,645	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83398	.	T	A	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.610;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=1.229;QD=24.14;ReadPosRankSum=2.733;SOR=0.668;ANN=A|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19270T>A|p.Ter6424Argext*?|19270/32304|19270/32304|6424/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,21:26:95:656,0,95	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83570	.	A	C	948.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.65;SOR=0.818;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19442A>C|p.Glu6481Ala|19442/32304|19442/32304|6481/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:69:977,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83622	.	T	C	694.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=3.700;QD=25.73;ReadPosRankSum=-2.356;SOR=1.179;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19494T>C|p.Tyr6498Tyr|19494/32304|19494/32304|6498/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,23:27:26:723,0,26	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	83909	.	T	C	856.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.56;SOR=0.826;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19781T>C|p.Leu6594Pro|19781/32304|19781/32304|6594/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:31:63:885,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84007	.	T	G	785.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.74;SOR=0.859;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19879T>G|p.Leu6627Val|19879/32304|19879/32304|6627/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:60:814,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84052	.	G	C	617.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.86;SOR=0.963;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.19924G>C|p.Ala6642Pro|19924/32304|19924/32304|6642/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:45:646,45,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84295	.	G	C	518.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.30;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.20167G>C|p.Glu6723Gln|20167/32304|20167/32304|6723/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:39:547,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84298	.	C	T	575.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.30;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.20170C>T|p.Arg6724Trp|20170/32304|20170/32304|6724/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:604,42,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84483	.	G	A	770.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=3;QD=26.58;SOR=1.981;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.20355G>A|p.Ser6785Ser|20355/32304|20355/32304|6785/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:57:799,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84607	.	A	T	1444.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.60;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.20479A>T|p.Thr6827Ser|20479/32304|20479/32304|6827/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1473,105,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84790	.	T	C	1369.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=31.13;SOR=1.508;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.20662T>C|p.Ser6888Pro|20662/32304|20662/32304|6888/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1398,102,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	84994	.	A	T	834.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=2;QD=29.81;SOR=0.846;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.20866A>T|p.Arg6956Trp|20866/32304|20866/32304|6956/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,26:28:63:863,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85202	.	A	G	634.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.74;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21074A>G|p.Gln7025Arg|21074/32304|21074/32304|7025/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:663,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85280	.	T	A	768.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.94;SOR=1.329;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21152T>A|p.Leu7051Gln|21152/32304|21152/32304|7051/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:23:57:797,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85336	.	T	C	844.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.59;SOR=1.179;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21208T>C|p.Ter7070Glnext*?|21208/32304|21208/32304|7070/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:63:873,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85455	.	G	C	1413.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.88;SOR=0.836;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21327G>C|p.Leu7109Phe|21327/32304|21327/32304|7109/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1442,102,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85547	.	G	A	1553.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=1;MQRankSum=-0.212;QD=28.25;ReadPosRankSum=0.353;SOR=0.271;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21419G>A|p.Arg7140Gln|21419/32304|21419/32304|7140/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1582,114,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85611	.	A	T	1395.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;DP=49;Dels=0.00;ExcessHet=3.0103;FS=6.887;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=6.975;QD=28.49;ReadPosRankSum=-0.688;SOR=0.540;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21483A>T|p.Ile7161Ile|21483/32304|21483/32304|7161/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:3,46:49:46:1424,46,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85664	.	G	A	1230.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.711;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9695;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=6.406;QD=30.02;ReadPosRankSum=1.544;SOR=0.850;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21536G>A|p.Arg7179His|21536/32304|21536/32304|7179/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,39:41:90:1259,90,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	85748	.	C	T	698.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.045;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=4.692;QD=31.76;ReadPosRankSum=-0.629;SOR=0.148;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21620C>T|p.Ala7207Val|21620/32304|21620/32304|7207/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,20:22:31:727,31,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86103	.	G	A	668.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=30.40;SOR=0.874;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.21975G>A|p.Met7325Ile|21975/32304|21975/32304|7325/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:51:697,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86319	.	T	G	970.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=34.41;SOR=1.528;ANN=G|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22191T>G|p.Tyr7397*|22191/32304|22191/32304|7397/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:999,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86335	.	A	G	890.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=32.99;SOR=1.528;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22207A>G|p.Ile7403Val|22207/32304|22207/32304|7403/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:919,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86422	.	C	G	1152.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.34;SOR=0.914;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22294C>G|p.Leu7432Val|22294/32304|22294/32304|7432/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1181,84,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86489	.	G	T	1054.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.079;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.96;ReadPosRankSum=1.472;SOR=1.531;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22361G>T|p.Arg7454Leu|22361/32304|22361/32304|7454/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,32:33:78:1083,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86535	.	T	C	754.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.31;SOR=2.303;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22407T>C|p.Tyr7469Tyr|22407/32304|22407/32304|7469/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:783,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86877	.	A	G	940.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.84;SOR=0.765;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22749A>G|p.Arg7583Arg|22749/32304|22749/32304|7583/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:969,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86880	.	A	G	932.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.16;SOR=0.906;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22752A>G|p.Ile7584Met|22752/32304|22752/32304|7584/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:69:961,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86934	.	T	G	932.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=1;QD=30.09;SOR=0.826;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22806T>G|p.Ile7602Met|22806/32304|22806/32304|7602/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:961,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	86980	.	C	A	867.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=30.99;SOR=0.997;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22852C>A|p.Gln7618Lys|22852/32304|22852/32304|7618/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:896,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87020	.	G	A	793.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.75;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22892G>A|p.Arg7631Lys|22892/32304|22892/32304|7631/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:26:60:822,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87081	.	G	A	682.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=34.14;SOR=1.127;ANN=A|stop_retained_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22953G>A|p.Ter7651Ter|22953/32304|22953/32304|7651/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:21:51:711,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87083	.	G	A	650.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=30.99;SOR=0.990;ANN=A|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.22955G>A|p.Trp7652*|22955/32304|22955/32304|7652/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:679,51,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87136	.	G	A	760.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=30.43;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23008G>A|p.Gly7670Arg|23008/32304|23008/32304|7670/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:789,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87187	.	G	A	844.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=32.49;SOR=1.445;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23059G>A|p.Gly7687Arg|23059/32304|23059/32304|7687/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:873,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87317	.	G	C	1013.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.79;SOR=0.976;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23189G>C|p.Cys7730Ser|23189/32304|23189/32304|7730/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1042,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87451	.	C	T	1439.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.48;SOR=0.739;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23323C>T|p.His7775Tyr|23323/32304|23323/32304|7775/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1468,108,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87522	.	C	T	1276.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.816;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.60;ReadPosRankSum=-0.867;SOR=0.477;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23394C>T|p.Asp7798Asp|23394/32304|23394/32304|7798/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,37:38:96:1305,96,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87745	.	A	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DP=26;Dels=0.00;ExcessHet=3.0103;FS=7.048;HaplotypeScore=24.2810;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=0.097;QD=1.30;ReadPosRankSum=1.248;SOR=2.303;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23617A>C|p.Thr7873Pro|23617/32304|23617/32304|7873/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,6:26:62:62,0,361	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87745	.	A	AC	284.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.990;DP=26;ExcessHet=3.0103;FS=13.757;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.806;QD=13.57;RPA=5,6;RU=C;ReadPosRankSum=-0.252;SOR=1.706;STR;ANN=AC|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23622dupC|p.Thr7875fs|23623/32304|23623/32304|7875/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:3,18:26:15:322,15,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87751	.	A	C	811.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.5826;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=30.07;SOR=1.302;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23623A>C|p.Thr7875Pro|23623/32304|23623/32304|7875/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:840,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87833	.	T	A	790.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=28.17;SOR=0.990;ANN=A|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23705T>A|p.Leu7902*|23705/32304|23705/32304|7902/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:60:819,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	87985	.	T	A	561.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.21;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23857T>A|p.Cys7953Ser|23857/32304|23857/32304|7953/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:590,42,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88078	.	G	C	603.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.75;SOR=0.784;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.23950G>C|p.Asp7984His|23950/32304|23950/32304|7984/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:632,45,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88156	.	G	A	718.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.845;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=5.494;QD=23.17;ReadPosRankSum=0.457;SOR=0.639;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24028G>A|p.Glu8010Lys|24028/32304|24028/32304|8010/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,26:31:10:746,0,10	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88225	.	G	A	700.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6617;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=5.328;QD=24.17;ReadPosRankSum=-1.107;SOR=1.136;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24097G>A|p.Gly8033Arg|24097/32304|24097/32304|8033/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,25:29:23:729,0,23	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88249	.	G	T	741.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.6412;MLEAC=1;MLEAF=0.500;MQ=55.16;MQ0=0;MQRankSum=5.019;QD=23.93;ReadPosRankSum=1.000;SOR=1.358;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24121G>T|p.Gly8041Cys|24121/32304|24121/32304|8041/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,25:32:23:770,0,23	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88278	.	TCAAAATTTTATTTTCC	T	2629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=4.245;QD=27.39;ReadPosRankSum=1.548;SOR=1.244;ANN=T|frameshift_variant&stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24160_24175delATTTTCCCAAAATTTT|p.Ile8054fs|24160/32304|24160/32304|8054/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	0/1:2,16:23:54:2667,0,54	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88350	.	C	T	796.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.46;SOR=1.179;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24222C>T|p.Arg8074Arg|24222/32304|24222/32304|8074/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:825,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88500	.	C	T	957.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.93;SOR=1.329;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24372C>T|p.Ser8124Ser|24372/32304|24372/32304|8124/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:986,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88724	.	C	A	317.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24596C>A|p.Thr8199Asn|24596/32304|24596/32304|8199/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:24:346,24,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88740	.	C	A	269.8	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SOR=1.022;ANN=A|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24612C>A|p.Cys8204*|24612/32304|24612/32304|8204/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,12:12:21:298,21,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88747	.	T	A	280.8	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SOR=0.836;ANN=A|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24619T>A|p.Ter8207Lysext*?|24619/32304|24619/32304|8207/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,13:13:21:309,21,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88875	.	G	A	435.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.24;SOR=1.244;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24747G>A|p.Met8249Ile|24747/32304|24747/32304|8249/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:33:464,33,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	88962	.	G	A	660.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.73;SOR=0.963;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24834G>A|p.Leu8278Leu|24834/32304|24834/32304|8278/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:48:689,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89100	.	G	A	779.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=32.49;SOR=1.051;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24972G>A|p.Met8324Ile|24972/32304|24972/32304|8324/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:808,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89106	.	A	G	726.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=31.60;SOR=0.776;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.24978A>G|p.Ile8326Met|24978/32304|24978/32304|8326/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:755,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89153	.	A	G	976.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=31.51;SOR=1.044;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25025A>G|p.Asp8342Gly|25025/32304|25025/32304|8342/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:72:1005,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89250	.	A	T	911.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=32.56;SOR=1.179;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25122A>T|p.Leu8374Leu|25122/32304|25122/32304|8374/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:69:940,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89268	.	ATTTGTACCTCATCAACCACATGAAGTGG	A	3005.74	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=32.20;SOR=2.303;ANN=A|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25153_25180delCAACCACATGAAGTGGTTTGTACCTCAT|p.Gln8385fs|25153/32304|25153/32304|8385/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,10:24:30:3043,30,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89325	.	G	A	843.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=32.45;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25197G>A|p.Arg8399Arg|25197/32304|25197/32304|8399/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:872,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89410	.	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.34;SOR=1.284;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25282C>T|p.His8428Tyr|25282/32304|25282/32304|8428/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1031,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89585	.	A	T	909.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.70;SOR=0.922;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25457A>T|p.Asn8486Ile|25457/32304|25457/32304|8486/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:69:938,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89643	.	G	A	992.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.02;SOR=0.892;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25515G>A|p.Leu8505Leu|25515/32304|25515/32304|8505/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1021,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89654	.	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.87;SOR=1.112;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25526T>C|p.Leu8509Pro|25526/32304|25526/32304|8509/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1048,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89774	.	C	T	977.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.785;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.59;ReadPosRankSum=-1.272;SOR=0.545;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25646C>T|p.Thr8549Ile|25646/32304|25646/32304|8549/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,29:30:41:1006,41,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	89988	.	A	G	789.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.891;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5707;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.141;QD=29.25;ReadPosRankSum=0.000;SOR=0.368;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25860A>G|p.Gly8620Gly|25860/32304|25860/32304|8620/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,26:27:26:818,26,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90034	.	G	A	938.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=33.72;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25906G>A|p.Gly8636Ser|25906/32304|25906/32304|8636/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:72:967,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90083	.	C	G	873.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.21;SOR=0.836;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25955C>G|p.Ser8652Cys|25955/32304|25955/32304|8652/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:902,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90108	.	A	C	923.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=1.382;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.25980A>C|p.Leu8660Leu|25980/32304|25980/32304|8660/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:29:69:952,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90259	.	A	G	785.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.023;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=5.197;QD=29.10;ReadPosRankSum=-1.437;SOR=0.160;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26131A>G|p.Thr8711Ala|26131/32304|26131/32304|8711/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,25:27:0:811,0,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90308	.	C	A	689.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.923;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=5.197;QD=25.53;ReadPosRankSum=-0.370;SOR=0.801;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26180C>A|p.Ala8727Asp|26180/32304|26180/32304|8727/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,25:27:8:717,0,8	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90375	.	T	C	778.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.95;SOR=1.697;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26247T>C|p.Phe8749Phe|26247/32304|26247/32304|8749/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:807,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90411	.	A	G	661.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.47;ReadPosRankSum=2.357;SOR=1.426;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26283A>G|p.Lys8761Lys|26283/32304|26283/32304|8761/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,23:25:21:690,21,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90412	.	G	A	638.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.571;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.56;ReadPosRankSum=2.355;SOR=1.426;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26284G>A|p.Val8762Met|26284/32304|26284/32304|8762/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,23:25:14:667,14,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90442	.	A	G	771.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.56;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26314A>G|p.Lys8772Glu|26314/32304|26314/32304|8772/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:57:800,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90453	.	A	G	655.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.23;SOR=0.990;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26325A>G|p.Lys8775Lys|26325/32304|26325/32304|8775/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:684,48,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90520	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-4.707;QD=1.45;ReadPosRankSum=-2.489;SOR=0.247;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26392G>A|p.Val8798Met|26392/32304|26392/32304|8798/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,3:24:63:63,0,622	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90549	.	G	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=-5.019;QD=3.84;ReadPosRankSum=-0.219;SOR=0.495;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26421G>T|p.Lys8807Asn|26421/32304|26421/32304|8807/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,5:27:99:132,0,662	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90564	.	C	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.900;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-5.208;QD=3.58;ReadPosRankSum=0.755;SOR=0.275;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26436C>A|p.Ile8812Ile|26436/32304|26436/32304|8812/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,6:29:99:132,0,682	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90585	.	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.671;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-4.955;QD=4.24;ReadPosRankSum=1.302;SOR=0.297;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26457A>G|p.Glu8819Glu|26457/32304|26457/32304|8819/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,8:33:99:168,0,741	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90591	.	T	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=2.7043;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-4.955;QD=4.33;ReadPosRankSum=1.891;SOR=0.387;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26463T>C|p.Phe8821Phe|26463/32304|26463/32304|8821/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,8:33:99:171,0,718	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90592	.	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7043;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-4.955;QD=4.02;ReadPosRankSum=1.891;SOR=0.387;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26464G>A|p.Glu8822Lys|26464/32304|26464/32304|8822/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,8:33:99:161,0,746	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90596	.	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.615;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=56.00;MQ0=0;MQRankSum=-4.760;QD=4.61;ReadPosRankSum=1.919;SOR=0.368;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26468C>T|p.Ala8823Val|26468/32304|26468/32304|8823/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,8:31:99:171,0,688	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90609	.	TC	T	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=33;ExcessHet=3.0103;FS=3.436;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-4.442;QD=8.62;ReadPosRankSum=0.671;SOR=0.634;ANN=T|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26482delC|p.Arg8828fs|26482/32304|26482/32304|8828/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	0/1:23,9:33:99:313,0,948	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90623	.	A	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-4.761;QD=5.30;ReadPosRankSum=-0.259;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26495A>T|p.His8832Leu|26495/32304|26495/32304|8832/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,9:29:99:182,0,600	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90642	.	A	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-4.953;QD=4.28;ReadPosRankSum=0.087;SOR=0.709;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26514A>T|p.Lys8838Asn|26514/32304|26514/32304|8838/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,9:31:99:161,0,576	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90659	.	A	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=-5.136;QD=3.66;ReadPosRankSum=0.040;SOR=0.573;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26531A>G|p.Asn8844Ser|26531/32304|26531/32304|8844/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,9:33:99:149,0,722	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90663	.	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=-4.935;QD=3.80;ReadPosRankSum=0.158;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26535A>G|p.Leu8845Leu|26535/32304|26535/32304|8845/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,8:31:99:146,0,719	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90674	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.59;MQ0=0;MQRankSum=-4.480;QD=3.03;ReadPosRankSum=0.817;SOR=0.765;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26546C>T|p.Ser8849Phe|26546/32304|26546/32304|8849/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:27:99:110,0,646	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90705	.	A	C,T	561.77	.	AC=1,1;AF=0.500,0.500;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.06;MQ0=0;QD=29.57;SOR=1.292;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26577A>C|p.Leu8859Phe|26577/32304|26577/32304|8859/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26577A>T|p.Leu8859Phe|26577/32304|26577/32304|8859/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/2:0,4,15:19:84:590,470,461,120,0,84	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90735	.	T	A	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-2.457;QD=0.87;ReadPosRankSum=-0.238;SOR=1.445;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26607T>A|p.Phe8869Leu|26607/32304|26607/32304|8869/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,2:16:42:42,0,461	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	90742	.	G	T	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-2.457;QD=1.24;ReadPosRankSum=-0.557;SOR=1.863;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26614G>T|p.Asp8872Tyr|26614/32304|26614/32304|8872/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,2:16:48:48,0,387	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	91030	.	G	A	861.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.750;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.14;ReadPosRankSum=0.467;SOR=0.255;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.26902G>A|p.Gly8968Arg|26902/32304|26902/32304|8968/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,25:26:66:890,66,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	91161	.	G	C	911.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.51;SOR=0.770;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.27033G>C|p.Gln9011His|27033/32304|27033/32304|9011/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:69:940,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	91627	.	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=1.061;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.27499C>T|p.Arg9167*|27499/32304|27499/32304|9167/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1216,87,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	91727	.	G	C	1003.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.42;SOR=1.022;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.27599G>C|p.Gly9200Ala|27599/32304|27599/32304|9200/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1032,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	91795	.	A	G	829.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.63;SOR=1.382;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.27667A>G|p.Ile9223Val|27667/32304|27667/32304|9223/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:858,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	91799	.	T	A	811.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.99;SOR=1.382;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.27671T>A|p.Val9224Glu|27671/32304|27671/32304|9224/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:60:840,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92014	.	G	A	851.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.07;SOR=2.215;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.27886G>A|p.Gly9296Ser|27886/32304|27886/32304|9296/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:880,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92120	.	G	C	1056.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.19;SOR=0.749;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.27992G>C|p.Ter9331Serext*?|27992/32304|27992/32304|9331/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1085,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92263	.	G	A	1092.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.15;SOR=1.112;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28135G>A|p.Val9379Ile|28135/32304|28135/32304|9379/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1121,81,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92610	.	T	A	1392.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=32.39;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28482T>A|p.Ser9494Arg|28482/32304|28482/32304|9494/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:47:99:1421,102,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92732	.	G	C	1059.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.766;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=4.189;QD=32.11;ReadPosRankSum=0.210;SOR=0.337;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28604G>C|p.Arg9535Thr|28604/32304|28604/32304|9535/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,32:33:78:1088,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92768	.	G	GA	930.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.48;RPA=1,2;RU=A;SOR=1.426;STR;ANN=GA|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28641dupA|p.Gly9548fs|28642/32304|28642/32304|9548/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,23:25:69:968,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92861	.	T	C	595.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28733T>C|p.Phe9578Ser|28733/32304|28733/32304|9578/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:624,45,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92975	.	GT	G	1021.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.80;RPA=2,1;RU=T;SOR=1.136;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28849delT|p.Ser9617fs|28849/32304|28849/32304|9617/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,25:27:75:1059,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92990	.	G	A	818.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.49;SOR=1.220;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28862G>A|p.Arg9621Lys|28862/32304|28862/32304|9621/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:847,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	92994	.	A	C	818.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.49;SOR=1.220;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.28866A>C|p.Ala9622Ala|28866/32304|28866/32304|9622/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:847,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	93240	.	G	A	513.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.54;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.29112G>A|p.Val9704Val|29112/32304|29112/32304|9704/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:39:542,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	93504	.	G	A	713.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.99;SOR=1.508;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.29376G>A|p.Val9792Val|29376/32304|29376/32304|9792/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:57:742,57,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	93729	.	A	G	948.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.61;SOR=0.892;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.29601A>G|p.Ser9867Ser|29601/32304|29601/32304|9867/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:977,69,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	93811	.	T	C	843.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.13;SOR=0.836;ANN=C|stop_lost|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.29683T>C|p.Ter9895Glnext*?|29683/32304|29683/32304|9895/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:872,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	94155	.	A	G	957.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.91;SOR=0.765;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.30027A>G|p.Leu10009Leu|30027/32304|30027/32304|10009/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:72:986,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	94616	.	C	T	738.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.55;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.30488C>T|p.Pro10163Leu|30488/32304|30488/32304|10163/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:54:767,54,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	94644	.	A	T	834.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.79;SOR=0.760;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.30516A>T|p.Lys10172Asn|30516/32304|30516/32304|10172/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:60:863,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	94891	.	C	T	518.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;SOR=1.127;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.30763C>T|p.His10255Tyr|30763/32304|30763/32304|10255/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:39:547,39,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	94951	.	G	A	564.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.72;SOR=0.793;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.30823G>A|p.Val10275Ile|30823/32304|30823/32304|10275/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:593,42,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95200	.	GT	G	751.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.59;RPA=4,3;RU=T;SOR=1.127;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31076delT|p.Leu10359fs|31076/32304|31076/32304|10359/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME	GT:AD:DP:GQ:PL	1/1:0,20:21:60:789,60,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95339	.	G	A	1279.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.21;SOR=0.741;ANN=A|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31211G>A|p.Trp10404*|31211/32304|31211/32304|10404/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,41:41:93:1308,93,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95450	.	A	C	1390.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.59;SOR=0.735;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31322A>C|p.Asp10441Ala|31322/32304|31322/32304|10441/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1419,99,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95483	.	A	G	1347.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.08;SOR=0.776;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31355A>G|p.Tyr10452Cys|31355/32304|31355/32304|10452/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1376,99,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95545	.	T	A	1437.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.68;SOR=0.990;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31417T>A|p.Trp10473Arg|31417/32304|31417/32304|10473/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1466,108,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95603	.	C	T	1053.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.73;SOR=0.914;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31475C>T|p.Ala10492Val|31475/32304|31475/32304|10492/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:78:1082,78,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95616	.	G	A	996.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=31.15;SOR=0.957;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31488G>A|p.Pro10496Pro|31488/32304|31488/32304|10496/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1025,75,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	95787	.	G	C	959.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=34.28;SOR=0.997;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31659G>C|p.Lys10553Asn|31659/32304|31659/32304|10553/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:988,72,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96061	.	T	C	865.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.92;SOR=0.836;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.31933T>C|p.Tyr10645His|31933/32304|31933/32304|10645/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:63:894,63,0	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96269	.	A	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DP=57;Dels=0.00;ExcessHet=3.0103;FS=8.922;HaplotypeScore=6.6805;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=-6.153;QD=2.75;ReadPosRankSum=-1.942;SOR=2.556;ANN=C|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32141A>C|p.Asp10714Ala|32141/32304|32141/32304|10714/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:47,10:57:99:185,0,1220	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96279	.	A	G	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DP=59;Dels=0.00;ExcessHet=3.0103;FS=8.593;HaplotypeScore=9.4954;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-4.618;QD=2.88;ReadPosRankSum=-1.719;SOR=2.331;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32151A>G|p.Thr10717Thr|32151/32304|32151/32304|10717/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:50,9:59:99:198,0,1326	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96289	.	G	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;DP=60;Dels=0.00;ExcessHet=3.0103;FS=11.081;HaplotypeScore=8.2503;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-5.485;QD=3.87;ReadPosRankSum=-1.295;SOR=2.621;ANN=T|stop_gained|HIGH|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32161G>T|p.Glu10721*|32161/32304|32161/32304|10721/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:46,10:60:99:245,0,1219	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96299	.	C	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=62;Dels=0.00;ExcessHet=3.0103;FS=7.395;HaplotypeScore=6.3513;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=1;MQRankSum=-4.415;QD=3.30;ReadPosRankSum=-0.591;SOR=1.942;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32171C>T|p.Ser10724Leu|32171/32304|32171/32304|10724/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:51,11:62:99:233,0,1226	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96303	.	T	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.925;HaplotypeScore=5.5626;MLEAC=1;MLEAF=0.500;MQ=53.75;MQ0=1;MQRankSum=-4.664;QD=3.20;ReadPosRankSum=0.000;SOR=1.375;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32175T>A|p.Thr10725Thr|32175/32304|32175/32304|10725/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:53,12:66:99:236,0,1335	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96307	.	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DP=67;Dels=0.00;ExcessHet=3.0103;FS=4.763;HaplotypeScore=5.5626;MLEAC=1;MLEAF=0.500;MQ=53.35;MQ0=1;MQRankSum=-4.398;QD=3.28;ReadPosRankSum=0.600;SOR=1.557;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32179A>G|p.Ile10727Val|32179/32304|32179/32304|10727/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:54,12:67:99:245,0,1322	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96336	.	C	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.557;HaplotypeScore=7.6637;MLEAC=1;MLEAF=0.500;MQ=53.31;MQ0=1;MQRankSum=-5.752;QD=3.55;ReadPosRankSum=2.387;SOR=1.095;ANN=A|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32208C>A|p.Ser10736Ser|32208/32304|32208/32304|10736/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:46,14:66:99:241,0,1362	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96373	.	G	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=53.41;MQ0=1;MQRankSum=-4.269;QD=3.40;ReadPosRankSum=1.004;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32245G>A|p.Glu10749Lys|32245/32304|32245/32304|10749/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:44,15:59:99:229,0,1331	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96389	.	G	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.218;HaplotypeScore=2.9496;MLEAC=1;MLEAF=0.500;MQ=53.20;MQ0=1;MQRankSum=-3.804;QD=3.36;ReadPosRankSum=-0.327;SOR=0.938;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32261G>A|p.Gly10754Asp|32261/32304|32261/32304|10754/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,14:52:99:203,0,1238	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96394	.	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8823;MLEAC=1;MLEAF=0.500;MQ=53.47;MQ0=1;MQRankSum=-3.948;QD=3.27;ReadPosRankSum=-0.192;SOR=0.940;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32266C>T|p.Pro10756Ser|32266/32304|32266/32304|10756/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:40,14:54:99:205,0,1271	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96411	.	G	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;DP=55;Dels=0.00;ExcessHet=3.0103;FS=7.568;HaplotypeScore=2.8990;MLEAC=1;MLEAF=0.500;MQ=53.93;MQ0=1;MQRankSum=-3.689;QD=2.87;ReadPosRankSum=1.214;SOR=1.741;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32283G>T|p.Val10761Val|32283/32304|32283/32304|10761/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:44,11:55:99:186,0,1395	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	96416	.	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DP=55;Dels=0.00;ExcessHet=3.0103;FS=14.045;HaplotypeScore=4.7307;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=1;MQRankSum=-4.115;QD=3.07;ReadPosRankSum=1.603;SOR=2.255;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_64129_96432|GENE_EXON_scaffold18634_cov63_64129_96432|transcript|Soaet10008832|protein_coding|1/1|c.32288C>T|p.Pro10763Leu|32288/32304|32288/32304|10763/10767||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:44,10:55:99:194,0,1382	scaffold18634_cov63	GLEAN	mRNA	64129	96432	0.97	+	.	ID=Soaet10008832
scaffold18634_cov63	163917	.	A	T	754.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.03;ReadPosRankSum=1.602;SOR=0.861;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding|2/5|c.592A>T|p.Thr198Ser|592/1008|592/1008|198/335||,T|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding||c.-3812A>T|||||3812|	GT:AD:DP:GQ:PL	1/1:1,25:27:57:783,57,0	scaffold18634_cov63	GLEAN	mRNA	163160	164969	0.56	+	.	ID=Soaet10008833
scaffold18634_cov63	164217	.	A	G	1001.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.83;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding|3/5|c.736A>G|p.Asn246Asp|736/1008|736/1008|246/335||,G|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding||c.-3512A>G|||||3512|	GT:AD:DP:GQ:PL	1/1:0,36:36:75:1030,75,0	scaffold18634_cov63	GLEAN	mRNA	163160	164969	0.56	+	.	ID=Soaet10008833
scaffold18634_cov63	164569	.	T	C	856.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SOR=2.124;ANN=C|synonymous_variant|LOW|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding|4/5|c.978T>C|p.Pro326Pro|978/1008|978/1008|326/335||,C|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding||c.-3160T>C|||||3160|	GT:AD:DP:GQ:PL	1/1:0,24:24:63:885,63,0	scaffold18634_cov63	GLEAN	mRNA	163160	164969	0.56	+	.	ID=Soaet10008833
scaffold18634_cov63	164605	.	A	G	871.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.87;SOR=1.358;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding||c.-3124A>G|||||3124|,G|intron_variant|MODIFIER|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding|4/4|c.990+24A>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:66:900,66,0	scaffold18634_cov63	GLEAN	mRNA	163160	164969	0.56	+	.	ID=Soaet10008833
scaffold18634_cov63	164959	.	G	A	865.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.63;SOR=1.136;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding|5/5|c.998G>A|p.Arg333Gln|998/1008|998/1008|333/335||,A|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding||c.-2770G>A|||||2770|	GT:AD:DP:GQ:PL	1/1:0,25:25:66:894,66,0	scaffold18634_cov63	GLEAN	mRNA	163160	164969	0.56	+	.	ID=Soaet10008833
scaffold18634_cov63	168211	.	T	A	698.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SOR=1.022;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding||c.*3242T>A|||||3242|,A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|1/9|c.365+118T>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:51:727,51,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	168270	.	A	T	729.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=1;QD=31.73;SOR=0.874;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding||c.*3301A>T|||||3301|,T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|1/9|c.365+177A>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:57:758,57,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	168810	.	G	A	540.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.75;SOR=0.990;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding||c.*3841G>A|||||3841|,A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|1/9|c.365+717G>A||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:39:569,39,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	169315	.	A	G	277.8	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SOR=0.859;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding||c.*4346A>G|||||4346|,G|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|1/9|c.366-845A>G||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:21:306,21,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	169571	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.108;SOR=0.307;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_163160_163618|GENE_EXON_scaffold18634_cov63_163160_163618|transcript|Soaet10008833|protein_coding||c.*4602G>A|||||4602|,A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|1/9|c.366-589G>A||||||	GT:AD:DP:GQ:PL	0/1:6,4:10:99:108,0,153	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	169971	.	C	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.352;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.417;SOR=1.061;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|1/9|c.366-189C>A||||||	GT:AD:DP:GQ:PL	0/1:16,13:29:99:349,0,479	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	170303	.	C	T	1180.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SOR=1.055;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|2/9|c.429+80C>T||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:87:1209,87,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	170724	.	A	T	1265.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.31;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|3/9|c.532-16A>T||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1294,93,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	171095	.	A	G	1047.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=34.93;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/10|c.735A>G|p.Lys245Lys|735/4260|735/4260|245/1419||	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1076,78,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	171417	.	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.34;SOR=0.957;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/10|c.1057A>G|p.Ile353Val|1057/4260|1057/4260|353/1419||	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1063,78,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	172438	.	C	T	984.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.96;SOR=1.255;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/10|c.2078C>T|p.Ser693Phe|2078/4260|2078/4260|693/1419||	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1013,75,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	173281	.	G	A	841.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.38;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/9|c.2838+83G>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:63:870,63,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	173341	.	G	C	816.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.41;SOR=0.846;ANN=C|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/9|c.2838+143G>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:845,60,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	173709	.	C	A	395.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SOR=1.112;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/9|c.2838+511C>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:30:424,30,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	173933	.	A	C	149.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/9|c.2838+735A>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:12:177,12,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	174149	.	G	C	272.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SOR=1.085;ANN=C|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/9|c.2838+951G>C||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:21:301,21,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	175408	.	C	T	667.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.35;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|5/9|c.2839-1136C>T||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:696,51,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	177154	.	C	A	964.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=31.12;SOR=1.839;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|6/9|c.3201+248C>A||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:75:993,75,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	177485	.	T	C	823.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.42;SOR=0.997;ANN=C|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|6/9|c.3201+579T>C||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:60:852,60,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	179534	.	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.77;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|7/9|c.3343-44G>A||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1077,78,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	180358	.	G	T	981.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=8.4757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.17;ReadPosRankSum=0.845;SOR=0.556;ANN=T|missense_variant|MODERATE|EXON_scaffold18634_cov63_167729_168093|GENE_EXON_scaffold18634_cov63_167729_168093|transcript|Soaet10008834|protein_coding|9/10|c.4045G>T|p.Ala1349Ser|4045/4260|4045/4260|1349/1419||	GT:AD:DP:GQ:PL	1/1:1,38:39:47:1010,47,0	scaffold18634_cov63	GLEAN	mRNA	167729	180655	0.71	+	.	ID=Soaet10008834
scaffold18634_cov63	191977	.	T	G	964.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.46;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_191970_192548|GENE_EXON_scaffold18634_cov63_191970_192548|transcript|Soaet10008836|protein_coding|1/1|c.572A>C|p.Asp191Ala|572/579|572/579|191/192||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_191689_191864|GENE_EXON_scaffold18634_cov63_191689_191864|transcript|Soaet10008835|protein_coding||c.-87A>C|||||87|	GT:AD:DP:GQ:PL	1/1:0,28:28:75:993,75,0	scaffold18634_cov63	GLEAN	mRNA	191970	192548	0.97	-	.	ID=Soaet10008836
scaffold18634_cov63	192090	.	TACA	T	977.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.47;RPA=6,5;RU=ACA;SOR=0.793;STR;ANN=T|disruptive_inframe_deletion|MODERATE|EXON_scaffold18634_cov63_191970_192548|GENE_EXON_scaffold18634_cov63_191970_192548|transcript|Soaet10008836|protein_coding|1/1|c.456_458delTGT|p.Val153del|458/579|456/579|152/192||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_191689_191864|GENE_EXON_scaffold18634_cov63_191689_191864|transcript|Soaet10008835|protein_coding||c.-203_-201delTGT|||||201|	GT:AD:DP:GQ:PL	1/1:0,19:21:57:1015,57,0	scaffold18634_cov63	GLEAN	mRNA	191970	192548	0.97	-	.	ID=Soaet10008836
scaffold18634_cov63	192201	.	C	T	819.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=34.16;SOR=0.859;ANN=T|synonymous_variant|LOW|EXON_scaffold18634_cov63_191970_192548|GENE_EXON_scaffold18634_cov63_191970_192548|transcript|Soaet10008836|protein_coding|1/1|c.348G>A|p.Arg116Arg|348/579|348/579|116/192||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_191689_191864|GENE_EXON_scaffold18634_cov63_191689_191864|transcript|Soaet10008835|protein_coding||c.-311G>A|||||311|,T|upstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding||c.-4899C>T|||||4899|	GT:AD:DP:GQ:PL	1/1:0,24:24:63:848,63,0	scaffold18634_cov63	GLEAN	mRNA	191970	192548	0.97	-	.	ID=Soaet10008836
scaffold18634_cov63	197762	.	A	T	995.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.17;SOR=0.880;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.563+12A>T||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1024,72,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	198946	.	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.874;SOR=0.250;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.563+1196C>T||||||	GT:AD:DP:GQ:PL	0/1:11,9:21:99:231,0,408	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	198992	.	T	A	589.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.49;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.563+1242T>A||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:618,45,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	201050	.	G	A	613.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.30;SOR=0.793;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.563+3300G>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:48:642,48,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	203078	.	C	T	675.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.79;SOR=1.402;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.564-2867C>T||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:51:704,51,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	203541	.	C	G	696.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.03;SOR=1.270;ANN=G|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.564-2404C>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:51:725,51,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	203834	.	G	A	1318.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.40;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.564-2111G>A||||||	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1347,96,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	204811	.	G	T	525.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.86;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.564-1134G>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:554,39,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	205131	.	C	T	820.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.83;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.564-814C>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:849,60,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	205134	.	A	C	822.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.91;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.564-811A>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:851,60,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	205758	.	C	T	640.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.86;SOR=0.963;ANN=T|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|2/7|c.564-187C>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:48:669,48,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	206874	.	CT	C	701.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=29.24;RPA=10,9;RU=T;SOR=1.051;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|3/7|c.859-75delT||||||	GT:AD:DP:GQ:PL	1/1:0,24:29:72:739,72,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	207621	.	G	A	1129.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=34.24;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|5/8|c.1459G>A|p.Asp487Asn|1459/2580|1459/2580|487/859||	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1158,84,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	208189	.	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=31.55;SOR=0.798;ANN=G|missense_variant|MODERATE|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding|6/8|c.1954A>G|p.Ser652Gly|1954/2580|1954/2580|652/859||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1227,87,0	scaffold18634_cov63	GLEAN	mRNA	197100	209044	0.75	+	.	ID=Soaet10008837
scaffold18634_cov63	213870	.	T	C	650.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.54;SOR=1.402;ANN=C|splice_region_variant&synonymous_variant|LOW|EXON_scaffold18634_cov63_213702_213769|GENE_EXON_scaffold18634_cov63_213702_213769|transcript|Soaet10008838|protein_coding|2/2|c.69T>C|p.Ser23Ser|69/159|69/159|23/52||,C|downstream_gene_variant|MODIFIER|EXON_scaffold18634_cov63_197100_197317|GENE_EXON_scaffold18634_cov63_197100_197317|transcript|Soaet10008837|protein_coding||c.*4826T>C|||||4826|	GT:AD:DP:GQ:PL	1/1:0,20:20:48:679,48,0	scaffold18634_cov63	GLEAN	mRNA	213702	213960	0.59	+	.	ID=Soaet10008838
scaffold18810_cov69	24272	.	A	T	1424.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.97;SOR=0.780;ANN=T|missense_variant|MODERATE|EXON_scaffold18810_cov69_22003_22150|GENE_EXON_scaffold18810_cov69_22003_22150|transcript|Soaet10008840|protein_coding|2/2|c.344A>T|p.Asp115Val|344/531|344/531|115/176||	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1453,105,0	scaffold18810_cov69	GLEAN	mRNA	22003	24459	1.00	+	.	ID=Soaet10008840
scaffold18810_cov69	64775	.	A	G	908.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.079;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.29;ReadPosRankSum=-0.665;SOR=0.836;ANN=G|stop_lost&splice_region_variant|HIGH|EXON_scaffold18810_cov69_64773_65075|GENE_EXON_scaffold18810_cov69_64773_65075|transcript|Soaet10008842|protein_coding|1/1|c.301T>C|p.Ter101Argext*?|301/303|301/303|101/100||	GT:AD:DP:GQ:PL	1/1:2,28:30:33:937,33,0	scaffold18810_cov69	GLEAN	mRNA	64773	65075	0.97	-	.	ID=Soaet10008842
scaffold18810_cov69	64846	.	G	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.251;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.09;MQ0=1;MQRankSum=1.664;QD=12.43;ReadPosRankSum=0.775;SOR=1.278;ANN=A|missense_variant|MODERATE|EXON_scaffold18810_cov69_64773_65075|GENE_EXON_scaffold18810_cov69_64773_65075|transcript|Soaet10008842|protein_coding|1/1|c.230C>T|p.Ala77Val|230/303|230/303|77/100||	GT:AD:DP:GQ:PL	0/1:18,14:32:99:426,0,521	scaffold18810_cov69	GLEAN	mRNA	64773	65075	0.97	-	.	ID=Soaet10008842
scaffold18810_cov69	112981	.	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.79;SOR=0.968;ANN=A|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|4/4|c.575C>T|p.Pro192Leu|575/642|575/642|192/213||	GT:AD:DP:GQ:PL	1/1:0,39:39:78:1112,78,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113105	.	G	A	884.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.49;SOR=1.143;ANN=A|stop_gained|HIGH|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|4/4|c.451C>T|p.Gln151*|451/642|451/642|151/213||	GT:AD:DP:GQ:PL	1/1:0,30:30:66:913,66,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113197	.	G	C	1081.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.91;SOR=0.869;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|4/4|c.359C>G|p.Thr120Arg|359/642|359/642|120/213||	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1110,81,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113216	.	G	A	1057.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.22;SOR=0.869;ANN=A|stop_gained|HIGH|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|4/4|c.340C>T|p.Gln114*|340/642|340/642|114/213||	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1086,78,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113315	.	G	A	958.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.96;SOR=0.826;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|3/3|c.289-48C>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:72:987,72,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113368	.	T	C	513.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.54;SOR=1.493;ANN=C|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|3/3|c.288+80A>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:39:542,39,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113383	.	A	T	409.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.32;SOR=1.911;ANN=T|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|3/3|c.288+65T>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:16:33:438,33,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113433	.	C	A	528.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.05;SOR=2.584;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|3/3|c.288+15G>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:17:42:557,42,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113605	.	G	A	616.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.26;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|2/3|c.233+80C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:48:645,48,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113608	.	G	A	593.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|2/3|c.233+77C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:45:622,45,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113620	.	A	T	708.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.22;SOR=0.874;ANN=T|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|2/3|c.233+65T>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:737,54,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113621	.	T	TA	825.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.26;RPA=2,3;RU=A;SOR=0.874;STR;ANN=TA|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|2/3|c.233+63_233+64insT||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:66:863,66,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113627	.	G	A	775.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.73;SOR=0.765;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|2/3|c.233+58C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:60:804,60,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113635	.	A	G	801.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.70;SOR=0.765;ANN=G|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|2/3|c.233+50T>C||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:60:830,60,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113871	.	C	T	690.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.40;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.152-105G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:719,54,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113900	.	G	A	691.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;SOR=1.697;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.152-134C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:51:720,51,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	113976	.	A	G	946.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.54;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.152-210T>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:975,69,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114044	.	C	T	1037.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=28.83;SOR=1.061;ANN=T|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.152-278G>A||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1066,78,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114132	.	A	G	1300.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.73;SOR=0.954;ANN=G|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.152-366T>C||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1329,96,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114137	.	A	G	1367.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.81;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.152-371T>C||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1396,99,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114258	.	A	G	1144.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.69;SOR=0.752;ANN=G|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+320T>C||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1173,84,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114312	.	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SOR=1.071;ANN=C|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+266A>G||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:75:1045,75,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114350	.	C	A	1053.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.26;SOR=0.826;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+228G>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1082,81,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114396	.	T	C	1251.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9841;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=27.24;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+182A>G||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1280,93,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114564	.	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;DP=42;Dels=0.00;ExcessHet=3.0103;FS=9.746;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=-6.352;QD=0.95;ReadPosRankSum=-2.209;SOR=3.240;ANN=G|intron_variant|MODIFIER|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+14T>C||||||	GT:AD:DP:GQ:PL	0/1:38,4:42:68:68,0,1035	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114570	.	A	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DP=42;Dels=0.00;ExcessHet=3.0103;FS=13.637;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=-6.352;QD=0.73;ReadPosRankSum=-1.694;SOR=3.240;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+8T>A||||||	GT:AD:DP:GQ:PL	0/1:38,4:42:59:59,0,1050	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114574	.	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=40;Dels=0.00;ExcessHet=3.0103;FS=14.433;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=-5.460;QD=1.04;ReadPosRankSum=-0.860;SOR=3.594;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+4A>G||||||	GT:AD:DP:GQ:PL	0/1:35,5:40:70:70,0,987	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114576	.	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DP=40;Dels=0.00;ExcessHet=3.0103;FS=14.752;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=-6.192;QD=0.92;ReadPosRankSum=-1.241;SOR=3.236;ANN=G|splice_donor_variant&intron_variant|HIGH|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/3|c.151+2T>C||||||;LOF=(EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|1|1.00)	GT:AD:DP:GQ:PL	0/1:36,4:40:65:65,0,1064	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114579	.	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;DP=41;Dels=0.00;ExcessHet=3.0103;FS=14.171;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-6.273;QD=0.82;ReadPosRankSum=-0.770;SOR=3.238;ANN=C|splice_region_variant&synonymous_variant|LOW|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.150A>G|p.Leu50Leu|150/642|150/642|50/213||	GT:AD:DP:GQ:PL	0/1:37,4:41:62:62,0,1101	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114589	.	G	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=38;Dels=0.00;ExcessHet=3.0103;FS=16.847;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=0;MQRankSum=-6.028;QD=0.97;ReadPosRankSum=-0.357;SOR=3.229;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.140C>G|p.Ser47Trp|140/642|140/642|47/213||	GT:AD:DP:GQ:PL	0/1:34,4:38:65:65,0,1073	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114619	.	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.32;SOR=1.418;ANN=T|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.110G>A|p.Arg37Gln|110/642|110/642|37/213||	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1161,84,0	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114654	.	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.209;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-3.026;QD=5.80;ReadPosRankSum=0.318;SOR=1.051;ANN=T|synonymous_variant|LOW|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.75G>A|p.Val25Val|75/642|75/642|25/213||	GT:AD:DP:GQ:PL	0/1:35,16:51:99:324,0,1124	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114666	.	G	A	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.237;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=3;MQRankSum=-2.807;QD=6.49;ReadPosRankSum=1.696;SOR=1.055;ANN=A|synonymous_variant|LOW|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.63C>T|p.Pro21Pro|63/642|63/642|21/213||	GT:AD:DP:GQ:PL	0/1:30,19:49:99:346,0,980	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114690	.	T	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.366;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=3;MQRankSum=-2.398;QD=5.92;ReadPosRankSum=3.402;SOR=1.680;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.39A>G|p.Ile13Met|39/642|39/642|13/213||	GT:AD:DP:GQ:PL	0/1:25,14:39:99:259,0,762	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114695	.	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.303;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=3;MQRankSum=-2.016;QD=4.68;ReadPosRankSum=4.034;SOR=1.493;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.34A>G|p.Arg12Gly|34/642|34/642|12/213||	GT:AD:DP:GQ:PL	0/1:25,13:38:99:206,0,797	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114701	.	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.387;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=3;MQRankSum=-1.507;QD=3.75;ReadPosRankSum=3.331;SOR=1.367;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.28A>G|p.Ser10Gly|28/642|28/642|10/213||	GT:AD:DP:GQ:PL	0/1:25,12:37:99:167,0,797	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114708	.	A	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.932;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=3;MQRankSum=-1.953;QD=3.78;ReadPosRankSum=2.315;SOR=2.340;ANN=G|synonymous_variant|LOW|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.21T>C|p.Cys7Cys|21/642|21/642|7/213||	GT:AD:DP:GQ:PL	0/1:28,10:38:99:172,0,808	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114709	.	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.384;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=3;MQRankSum=-1.953;QD=2.73;ReadPosRankSum=2.314;SOR=2.340;ANN=T|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.20G>A|p.Cys7Tyr|20/642|20/642|7/213||	GT:AD:DP:GQ:PL	0/1:28,10:38:99:132,0,833	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114719	.	A	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DP=35;Dels=0.00;ExcessHet=3.0103;FS=12.305;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.49;MQ0=3;MQRankSum=-2.052;QD=3.99;ReadPosRankSum=1.379;SOR=3.912;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.10T>G|p.Phe4Val|10/642|10/642|4/213||	GT:AD:DP:GQ:PL	0/1:26,9:35:99:168,0,725	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	114726	.	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=37;Dels=0.00;ExcessHet=3.0103;FS=12.096;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=3;MQRankSum=-2.157;QD=3.45;ReadPosRankSum=1.334;SOR=3.651;ANN=T|start_lost|HIGH|EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|transcript|Soaet10008843|protein_coding|1/4|c.3G>A|p.Met1?|3/642|3/642|1/213||;LOF=(EXON_scaffold18810_cov69_112914_113267|GENE_EXON_scaffold18810_cov69_112914_113267|1|1.00)	GT:AD:DP:GQ:PL	0/1:28,9:37:99:156,0,771	scaffold18810_cov69	GLEAN	mRNA	112914	114728	0.62	-	.	ID=Soaet10008843
scaffold18810_cov69	170830	.	T	C	1303.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.31;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|4/4|c.577A>G|p.Ile193Val|577/585|577/585|193/194||	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1332,96,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	170958	.	G	C	1175.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.78;SOR=0.746;ANN=C|missense_variant|MODERATE|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|4/4|c.449C>G|p.Ala150Gly|449/585|449/585|150/194||	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1204,87,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171003	.	T	G	1298.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.92;SOR=0.788;ANN=G|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|3/3|c.436-32A>C||||||	GT:AD:DP:GQ:PL	1/1:0,42:42:93:1327,93,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171152	.	A	T	1337.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.73;SOR=0.829;ANN=T|synonymous_variant|LOW|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|3/4|c.381T>A|p.Gly127Gly|381/585|381/585|127/194||	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1366,99,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171180	.	G	A	1357.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.58;SOR=0.739;ANN=A|missense_variant|MODERATE|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|3/4|c.353C>T|p.Thr118Met|353/585|353/585|118/194||	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1386,99,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171204	.	A	G	1186.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.962;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.43;ReadPosRankSum=1.378;SOR=0.267;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|2/3|c.333-4T>C||||||	GT:AD:DP:GQ:PL	1/1:1,38:39:87:1215,87,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171498	.	G	A	890.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.72;SOR=1.071;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/3|c.256-146C>T||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:66:919,66,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171512	.	G	A	946.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.81;SOR=0.997;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/3|c.256-160C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:975,69,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171592	.	T	C	841.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.18;SOR=0.922;ANN=C|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/3|c.256-240A>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:870,63,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171615	.	C	T	889.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=5.661;QD=27.81;ReadPosRankSum=2.142;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/3|c.256-263G>A||||||	GT:AD:DP:GQ:PL	1/1:2,30:32:66:918,66,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171703	.	G	T	1548.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3270;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.98;SOR=0.773;ANN=T|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/3|c.256-351C>A||||||	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1577,117,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	171828	.	G	A	1344.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.27;SOR=1.055;ANN=A|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/3|c.256-476C>T||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1373,99,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	172313	.	C	T	674.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.34;SOR=0.776;ANN=T|intron_variant|MODIFIER|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/3|c.255+121G>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:703,51,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold18810_cov69	172588	.	A	G	820.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SOR=0.846;ANN=G|missense_variant|MODERATE|EXON_scaffold18810_cov69_170822_170971|GENE_EXON_scaffold18810_cov69_170822_170971|transcript|Soaet10008844|protein_coding|1/4|c.101T>C|p.Leu34Pro|101/585|101/585|34/194||	GT:AD:DP:GQ:PL	1/1:0,26:26:63:849,63,0	scaffold18810_cov69	GLEAN	mRNA	170822	172688	0.47	-	.	ID=Soaet10008844
scaffold23078_cov63	260247	.	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.429;HaplotypeScore=3.5762;MLEAC=1;MLEAF=0.500;MQ=45.82;MQ0=4;MQRankSum=-1.807;QD=2.07;ReadPosRankSum=1.055;SOR=1.034;ANN=G|missense_variant|MODERATE|EXON_scaffold23078_cov63_260170_260466|GENE_EXON_scaffold23078_cov63_260170_260466|transcript|Soaet10009062|protein_coding|1/1|c.220T>C|p.Trp74Arg|220/297|220/297|74/98||	GT:AD:DP:GQ:PL	0/1:48,9:57:99:146,0,1231	scaffold23078_cov63	GLEAN	mRNA	260170	260466	0.86	-	.	ID=Soaet10009062
scaffold23078_cov63	260277	.	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.792;HaplotypeScore=1.9952;MLEAC=1;MLEAF=0.500;MQ=42.77;MQ0=8;MQRankSum=-0.791;QD=1.12;ReadPosRankSum=0.980;SOR=1.837;ANN=A|missense_variant|MODERATE|EXON_scaffold23078_cov63_260170_260466|GENE_EXON_scaffold23078_cov63_260170_260466|transcript|Soaet10009062|protein_coding|1/1|c.190C>T|p.Leu64Phe|190/297|190/297|64/98||	GT:AD:DP:GQ:PL	0/1:50,8:58:93:93,0,1250	scaffold23078_cov63	GLEAN	mRNA	260170	260466	0.86	-	.	ID=Soaet10009062
scaffold23078_cov63	260302	.	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=9;MQRankSum=1.453;QD=2.29;ReadPosRankSum=0.157;SOR=0.840;ANN=A|synonymous_variant|LOW|EXON_scaffold23078_cov63_260170_260466|GENE_EXON_scaffold23078_cov63_260170_260466|transcript|Soaet10009062|protein_coding|1/1|c.165C>T|p.Gly55Gly|165/297|165/297|55/98||	GT:AD:DP:GQ:PL	0/1:51,10:61:99:168,0,1160	scaffold23078_cov63	GLEAN	mRNA	260170	260466	0.86	-	.	ID=Soaet10009062
scaffold23078_cov63	260351	.	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.453;HaplotypeScore=6.8224;MLEAC=1;MLEAF=0.500;MQ=39.01;MQ0=9;MQRankSum=0.215;QD=1.41;ReadPosRankSum=-1.388;SOR=0.985;ANN=T|missense_variant|MODERATE|EXON_scaffold23078_cov63_260170_260466|GENE_EXON_scaffold23078_cov63_260170_260466|transcript|Soaet10009062|protein_coding|1/1|c.116G>A|p.Ser39Asn|116/297|116/297|39/98||	GT:AD:DP:GQ:PL	0/1:47,9:56:99:107,0,1146	scaffold23078_cov63	GLEAN	mRNA	260170	260466	0.86	-	.	ID=Soaet10009062
scaffold23078_cov63	260359	.	G	A	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;DP=60;Dels=0.00;ExcessHet=3.0103;FS=9.510;HaplotypeScore=4.9149;MLEAC=1;MLEAF=0.500;MQ=39.68;MQ0=9;MQRankSum=-1.114;QD=0.26;ReadPosRankSum=0.193;SOR=3.250;ANN=A|synonymous_variant|LOW|EXON_scaffold23078_cov63_260170_260466|GENE_EXON_scaffold23078_cov63_260170_260466|transcript|Soaet10009062|protein_coding|1/1|c.108C>T|p.Asp36Asp|108/297|108/297|36/98||	GT:AD:DP:GQ:PL	0/1:52,8:60:44:44,0,1269	scaffold23078_cov63	GLEAN	mRNA	260170	260466	0.86	-	.	ID=Soaet10009062
scaffold23078_cov63	260439	.	C	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=46.24;MQ0=0;MQRankSum=-2.767;QD=2.05;ReadPosRankSum=1.231;SOR=0.859;ANN=A|missense_variant|MODERATE|EXON_scaffold23078_cov63_260170_260466|GENE_EXON_scaffold23078_cov63_260170_260466|transcript|Soaet10009062|protein_coding|1/1|c.28G>T|p.Asp10Tyr|28/297|28/297|10/98||	GT:AD:DP:GQ:PL	0/1:42,10:52:99:135,0,1083	scaffold23078_cov63	GLEAN	mRNA	260170	260466	0.86	-	.	ID=Soaet10009062
scaffold25253_cov62	1297	.	T	TCC	658.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.94;RPA=9,11;RU=C;SOR=0.693;STR;ANN=TCC|splice_region_variant&intron_variant|LOW|EXON_scaffold25253_cov62_909_1295|GENE_EXON_scaffold25253_cov62_909_1295|transcript|Soaet10009037|protein_coding|1/1|c.73-3_73-2insGG||||||	GT:AD:DP:GQ:PL	1/1:0,20:31:60:696,60,0	scaffold25253_cov62	GLEAN	mRNA	909	1390	0.49	-	.	ID=Soaet10009037
scaffold25253_cov62	1381	.	T	C	741.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SOR=0.836;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_909_1295|GENE_EXON_scaffold25253_cov62_909_1295|transcript|Soaet10009037|protein_coding|1/2|c.10A>G|p.Lys4Glu|10/459|10/459|4/152||	GT:AD:DP:GQ:PL	1/1:0,28:28:54:770,54,0	scaffold25253_cov62	GLEAN	mRNA	909	1390	0.49	-	.	ID=Soaet10009037
scaffold25253_cov62	6586	.	T	C	896.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=32.03;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold25253_cov62_6418_6484|GENE_EXON_scaffold25253_cov62_6418_6484|transcript|Soaet10009038|protein_coding|2/3|c.93T>C|p.Asn31Asn|93/546|93/546|31/181||,C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_8769_8811|GENE_EXON_scaffold25253_cov62_8769_8811|transcript|Soaet10009039|protein_coding||c.*2183A>G|||||2183|,C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.*2677A>G|||||2677|	GT:AD:DP:GQ:PL	1/1:0,28:28:66:925,66,0	scaffold25253_cov62	GLEAN	mRNA	6418	7512	1.00	+	.	ID=Soaet10009038
scaffold25253_cov62	8796	.	A	G	750.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.64;SOR=0.963;ANN=G|synonymous_variant|LOW|EXON_scaffold25253_cov62_8769_8811|GENE_EXON_scaffold25253_cov62_8769_8811|transcript|Soaet10009039|protein_coding|3/3|c.282T>C|p.Leu94Leu|282/309|282/309|94/102||,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_6418_6484|GENE_EXON_scaffold25253_cov62_6418_6484|transcript|Soaet10009038|protein_coding||c.*1284A>G|||||1284|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.*467T>C|||||467|	GT:AD:DP:GQ:PL	1/1:0,23:23:57:779,57,0	scaffold25253_cov62	GLEAN	mRNA	8769	9228	0.95	-	.	ID=Soaet10009039
scaffold25253_cov62	9264	.	C	T	430.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.97;SOR=3.611;ANN=T|splice_region_variant&stop_retained_variant|LOW|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding|3/3|c.3143G>A|p.Ter1048Ter|3143/3144|3143/3144|1048/1047||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_8769_8811|GENE_EXON_scaffold25253_cov62_8769_8811|transcript|Soaet10009039|protein_coding||c.-36G>A|||||36|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_6418_6484|GENE_EXON_scaffold25253_cov62_6418_6484|transcript|Soaet10009038|protein_coding||c.*1752C>T|||||1752|	GT:AD:DP:GQ:PL	1/1:0,12:12:33:459,33,0	scaffold25253_cov62	GLEAN	mRNA	9263	13230	1.00	-	.	ID=Soaet10009040
scaffold25253_cov62	15051	.	C	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.769;HaplotypeScore=2.6961;MLEAC=1;MLEAF=0.500;MQ=54.92;MQ0=0;MQRankSum=-2.831;QD=2.74;ReadPosRankSum=-0.942;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.60C>A|p.Asp20Glu|60/1299|60/1299|20/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1821G>T|||||1821|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*3053G>T|||||3053|	GT:AD:DP:GQ:PL	0/1:13,3:16:72:72,0,371	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15052	.	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.869;HaplotypeScore=2.6961;MLEAC=1;MLEAF=0.500;MQ=54.92;MQ0=0;MQRankSum=-2.690;QD=3.12;ReadPosRankSum=-1.083;SOR=1.781;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.61A>G|p.Asn21Asp|61/1299|61/1299|21/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1822T>C|||||1822|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*3052T>C|||||3052|	GT:AD:DP:GQ:PL	0/1:12,3:16:75:75,0,341	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15066	.	C	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.823;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.50;MQ0=0;MQRankSum=-3.094;QD=2.10;ReadPosRankSum=0.119;SOR=1.751;ANN=G|synonymous_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.75C>G|p.Thr25Thr|75/1299|75/1299|25/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1836G>C|||||1836|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*3038G>C|||||3038|	GT:AD:DP:GQ:PL	0/1:15,3:18:66:66,0,426	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15079	.	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.97;MQ0=0;MQRankSum=-3.334;QD=1.89;ReadPosRankSum=0.636;SOR=1.863;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.88A>C|p.Thr30Pro|88/1299|88/1299|30/432||,C|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1849T>G|||||1849|,C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*3025T>G|||||3025|	GT:AD:DP:GQ:PL	0/1:17,3:20:66:66,0,463	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15085	.	G	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=0;MQRankSum=-4.378;QD=1.66;ReadPosRankSum=1.057;SOR=2.093;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.94G>C|p.Glu32Gln|94/1299|94/1299|32/432||,C|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1855C>G|||||1855|,C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*3019C>G|||||3019|	GT:AD:DP:GQ:PL	0/1:18,3:21:63:63,0,505	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15091	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=0;MQRankSum=-4.378;QD=1.66;ReadPosRankSum=1.561;SOR=2.093;ANN=T|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.100C>T|p.Pro34Ser|100/1299|100/1299|34/432||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1861G>A|||||1861|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*3013G>A|||||3013|	GT:AD:DP:GQ:PL	0/1:18,3:21:63:63,0,507	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15106	.	T	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.048;HaplotypeScore=8.5467;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=1;MQRankSum=-3.234;QD=8.99;ReadPosRankSum=-2.322;SOR=1.410;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.115T>A|p.Phe39Ile|115/1299|115/1299|39/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1876A>T|||||1876|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2998A>T|||||2998|	GT:AD:DP:GQ:PL	0/1:24,16:40:99:388,0,611	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15111	.	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.752;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=1;MQRankSum=-3.049;QD=9.23;ReadPosRankSum=-2.134;SOR=1.169;ANN=T|synonymous_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.120C>T|p.Ser40Ser|120/1299|120/1299|40/432||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1881G>A|||||1881|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2993G>A|||||2993|	GT:AD:DP:GQ:PL	0/1:25,18:43:99:425,0,653	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15129	.	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.781;HaplotypeScore=19.7375;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=1;MQRankSum=-3.060;QD=9.43;ReadPosRankSum=-0.525;SOR=1.312;ANN=A|synonymous_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.138G>A|p.Gln46Gln|138/1299|138/1299|46/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1899C>T|||||1899|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2975C>T|||||2975|	GT:AD:DP:GQ:PL	0/1:27,19:46:99:462,0,743	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15137	.	T	TGCTTTACGAACA	2252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;DP=46;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-3.060;QD=12.52;ReadPosRankSum=-0.875;SOR=1.312;ANN=TGCTTTACGAACA|disruptive_inframe_insertion|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.146_147insGCTTTACGAACA|p.Leu49_Lys50insLeuTyrGluHis|147/1299|147/1299|49/432||,TGCTTTACGAACA|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1908_-1907insTGTTCGTAAAGC|||||1908|,TGCTTTACGAACA|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2966_*2967insTGTTCGTAAAGC|||||2966|	GT:AD:DP:GQ:PL	0/1:27,18:45:99:2290,0,3897	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15138	.	T	G	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.277;HaplotypeScore=4.7384;MLEAC=1;MLEAF=0.500;MQ=58.64;MQ0=1;MQRankSum=-2.545;QD=9.68;ReadPosRankSum=-0.558;SOR=1.096;ANN=G|synonymous_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.147T>G|p.Leu49Leu|147/1299|147/1299|49/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1908A>C|||||1908|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2966A>C|||||2966|	GT:AD:DP:GQ:PL	0/1:27,17:44:99:454,0,782	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15151	.	C	A	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4944;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=1;MQRankSum=-2.612;QD=11.35;ReadPosRankSum=-0.872;SOR=0.732;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.160C>A|p.Gln54Lys|160/1299|160/1299|54/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-1921G>T|||||1921|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2953G>T|||||2953|	GT:AD:DP:GQ:PL	0/1:29,25:54:99:641,0,768	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15231	.	A	T	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.973;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=0.957;QD=12.30;ReadPosRankSum=1.172;SOR=0.855;ANN=T|synonymous_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.240A>T|p.Pro80Pro|240/1299|240/1299|80/432||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2001T>A|||||2001|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2873T>A|||||2873|	GT:AD:DP:GQ:PL	0/1:35,30:66:99:828,0,935	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15301	.	G	A	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4784;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=-0.846;QD=14.47;ReadPosRankSum=-0.557;SOR=0.558;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.310G>A|p.Asp104Asn|310/1299|310/1299|104/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2071C>T|||||2071|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2803C>T|||||2803|	GT:AD:DP:GQ:PL	0/1:32,42:74:99:1099,0,895	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15469	.	C	G	1896.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4926;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=31.61;SOR=0.906;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.478C>G|p.Gln160Glu|478/1299|478/1299|160/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2239G>C|||||2239|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2635G>C|||||2635|	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1925,138,0	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15484	.	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=31.85;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.493A>G|p.Lys165Glu|493/1299|493/1299|165/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2254T>C|||||2254|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2620T>C|||||2620|	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1939,141,0	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15487	.	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=31.42;SOR=0.726;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.496A>G|p.Asn166Asp|496/1299|496/1299|166/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2257T>C|||||2257|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2617T>C|||||2617|	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1882,135,0	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15694	.	G	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-2.834;QD=11.72;ReadPosRankSum=0.327;SOR=0.743;ANN=T|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.703G>T|p.Val235Phe|703/1299|703/1299|235/432||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2464C>A|||||2464|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2410C>A|||||2410|	GT:AD:DP:GQ:PL	0/1:30,20:50:99:614,0,1019	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15719	.	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.978;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-3.368;QD=7.62;ReadPosRankSum=3.706;SOR=1.633;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/2|c.728G>A|p.Arg243Gln|728/1299|728/1299|243/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2489C>T|||||2489|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2385C>T|||||2385|	GT:AD:DP:GQ:PL	0/1:41,18:59:99:478,0,1220	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	15812	.	G	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-5.996;QD=7.69;ReadPosRankSum=-2.170;SOR=0.582;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2582C>A|||||2582|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2292C>A|||||2292|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/1|c.796+25G>T||||||	GT:AD:DP:GQ:PL	0/1:49,22:71:99:574,0,1350	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16053	.	A	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;DP=54;Dels=0.00;ExcessHet=3.0103;FS=15.099;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=-3.237;QD=11.81;ReadPosRankSum=1.619;SOR=1.597;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|1/1|c.797-5A>T||||||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2823T>A|||||2823|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2051T>A|||||2051|	GT:AD:DP:GQ:PL	0/1:31,23:54:99:666,0,921	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16081	.	C	T	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=49;Dels=0.00;ExcessHet=3.0103;FS=11.451;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=-3.225;QD=11.16;ReadPosRankSum=0.041;SOR=1.925;ANN=T|synonymous_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.820C>T|p.Leu274Leu|820/1299|820/1299|274/432||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2851G>A|||||2851|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2023G>A|||||2023|	GT:AD:DP:GQ:PL	0/1:30,19:49:99:575,0,842	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16088	.	A	G	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.144;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=-3.235;QD=9.52;ReadPosRankSum=0.111;SOR=1.862;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.827A>G|p.Tyr276Cys|827/1299|827/1299|276/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2858T>C|||||2858|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*2016T>C|||||2016|	GT:AD:DP:GQ:PL	0/1:29,15:44:99:447,0,791	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16121	.	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.305;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-3.359;QD=8.77;ReadPosRankSum=-3.246;SOR=1.705;ANN=T|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.860C>T|p.Pro287Leu|860/1299|860/1299|287/432||,T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2891G>A|||||2891|,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1983G>A|||||1983|	GT:AD:DP:GQ:PL	0/1:27,14:41:99:388,0,858	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16151	.	C	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;DP=35;Dels=0.00;ExcessHet=3.0103;FS=9.028;HaplotypeScore=12.6950;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-3.841;QD=6.76;ReadPosRankSum=-0.604;SOR=2.038;ANN=A|stop_gained|HIGH|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.890C>A|p.Ser297*|890/1299|890/1299|297/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2921G>T|||||2921|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1953G>T|||||1953|	GT:AD:DP:GQ:PL	0/1:26,9:35:99:265,0,759	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16158	.	T	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=12.7707;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-3.259;QD=8.45;ReadPosRankSum=-0.480;SOR=1.192;ANN=C|synonymous_variant|LOW|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.897T>C|p.Cys299Cys|897/1299|897/1299|299/432||,C|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2928A>G|||||2928|,C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1946A>G|||||1946|	GT:AD:DP:GQ:PL	0/1:24,11:35:99:324,0,628	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16169	.	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.475;HaplotypeScore=11.0205;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=-2.456;QD=6.85;ReadPosRankSum=0.687;SOR=1.230;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.908G>A|p.Gly303Glu|908/1299|908/1299|303/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2939C>T|||||2939|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1935C>T|||||1935|	GT:AD:DP:GQ:PL	0/1:25,11:36:99:275,0,668	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16177	.	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=-2.092;QD=7.97;ReadPosRankSum=0.571;SOR=0.886;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.916G>A|p.Glu306Lys|916/1299|916/1299|306/432||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-2947C>T|||||2947|,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1927C>T|||||1927|	GT:AD:DP:GQ:PL	0/1:25,14:39:99:339,0,773	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16261	.	C	G	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.386;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=1.124;QD=14.62;ReadPosRankSum=0.185;SOR=0.412;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.1000C>G|p.Leu334Val|1000/1299|1000/1299|334/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-3031G>C|||||3031|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1843G>C|||||1843|	GT:AD:DP:GQ:PL	0/1:23,27:50:99:759,0,524	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16360	.	A	G	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.31;ReadPosRankSum=1.331;SOR=0.554;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.1099A>G|p.Thr367Ala|1099/1299|1099/1299|367/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-3130T>C|||||3130|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1744T>C|||||1744|	GT:AD:DP:GQ:PL	0/1:27,33:60:99:887,0,775	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16470	.	T	G	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.071;HaplotypeScore=4.4921;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.708;SOR=1.018;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.1209T>G|p.Asn403Lys|1209/1299|1209/1299|403/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-3240A>C|||||3240|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1634A>C|||||1634|	GT:AD:DP:GQ:PL	0/1:23,33:57:99:866,0,650	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	16556	.	A	G	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.061;HaplotypeScore=5.4079;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-0.817;QD=15.35;ReadPosRankSum=0.631;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding|2/2|c.1295A>G|p.His432Arg|1295/1299|1295/1299|432/432||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_9263_12134|GENE_EXON_scaffold25253_cov62_9263_12134|transcript|Soaet10009040|protein_coding||c.-3326T>C|||||3326|,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding||c.*1548T>C|||||1548|	GT:AD:DP:GQ:PL	0/1:24,33:57:99:903,0,559	scaffold25253_cov62	GLEAN	mRNA	14992	16560	0.44	+	.	ID=Soaet10009041
scaffold25253_cov62	18418	.	T	C	930.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=34.47;SOR=0.765;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding|3/3|c.559A>G|p.Ser187Gly|559/873|559/873|187/290||,C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding||c.*1858T>C|||||1858|	GT:AD:DP:GQ:PL	1/1:0,27:27:69:959,69,0	scaffold25253_cov62	GLEAN	mRNA	18104	19275	0.37	-	.	ID=Soaet10009042
scaffold25253_cov62	18954	.	T	G	563.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.32;SOR=0.914;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_18104_18458|GENE_EXON_scaffold25253_cov62_18104_18458|transcript|Soaet10009042|protein_coding|2/3|c.218A>C|p.Glu73Ala|218/873|218/873|73/290||,G|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_14992_15787|GENE_EXON_scaffold25253_cov62_14992_15787|transcript|Soaet10009041|protein_coding||c.*2394T>G|||||2394|	GT:AD:DP:GQ:PL	1/1:0,18:18:42:592,42,0	scaffold25253_cov62	GLEAN	mRNA	18104	19275	0.37	-	.	ID=Soaet10009042
scaffold25253_cov62	39131	.	T	C	921.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SOR=1.220;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_38877_39011|GENE_EXON_scaffold25253_cov62_38877_39011|transcript|Soaet10009043|protein_coding|1/1|c.70-120A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:69:950,69,0	scaffold25253_cov62	GLEAN	mRNA	38877	39401	0.48	-	.	ID=Soaet10009043
scaffold25253_cov62	39167	.	C	A	1108.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.68;SOR=1.002;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_38877_39011|GENE_EXON_scaffold25253_cov62_38877_39011|transcript|Soaet10009043|protein_coding|1/1|c.70-156G>T||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1137,81,0	scaffold25253_cov62	GLEAN	mRNA	38877	39401	0.48	-	.	ID=Soaet10009043
scaffold25253_cov62	39207	.	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.77;SOR=1.061;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_38877_39011|GENE_EXON_scaffold25253_cov62_38877_39011|transcript|Soaet10009043|protein_coding|1/1|c.69+126C>T||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1100,78,0	scaffold25253_cov62	GLEAN	mRNA	38877	39401	0.48	-	.	ID=Soaet10009043
scaffold25253_cov62	84750	.	CA	C	790.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.84;RPA=4,3;RU=A;SOR=0.784;STR;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_79029_79220|GENE_EXON_scaffold25253_cov62_79029_79220|transcript|Soaet10009044|protein_coding||c.*2440delA|||||2440|,C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_84378_84661|GENE_EXON_scaffold25253_cov62_84378_84661|transcript|Soaet10009045|protein_coding|1/1|c.395-90delT||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:63:828,63,0	scaffold25253_cov62	GLEAN	mRNA	84378	85407	0.36	-	.	ID=Soaet10009045
scaffold25253_cov62	102595	.	A	C	130.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.51;SOR=1.609;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_99720_99965|GENE_EXON_scaffold25253_cov62_99720_99965|transcript|Soaet10009046|protein_coding||c.*2630A>C|||||2630|,C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_102042_102332|GENE_EXON_scaffold25253_cov62_102042_102332|transcript|Soaet10009047|protein_coding|1/6|c.291+263A>C||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0	scaffold25253_cov62	GLEAN	mRNA	102042	107379	0.76	+	.	ID=Soaet10009047
scaffold25253_cov62	106022	.	C	A	783.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.35;SOR=1.136;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_102042_102332|GENE_EXON_scaffold25253_cov62_102042_102332|transcript|Soaet10009047|protein_coding|6/7|c.874C>A|p.Gln292Lys|874/1191|874/1191|292/396||,A|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_107773_108135|GENE_EXON_scaffold25253_cov62_107773_108135|transcript|Soaet10009048|protein_coding||c.*1751G>T|||||1751|	GT:AD:DP:GQ:PL	1/1:0,25:25:60:812,60,0	scaffold25253_cov62	GLEAN	mRNA	102042	107379	0.76	+	.	ID=Soaet10009047
scaffold25253_cov62	106450	.	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.961;SOR=0.676;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_107773_108135|GENE_EXON_scaffold25253_cov62_107773_108135|transcript|Soaet10009048|protein_coding||c.*1323G>A|||||1323|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_102042_102332|GENE_EXON_scaffold25253_cov62_102042_102332|transcript|Soaet10009047|protein_coding|6/6|c.1040+262C>T||||||	GT:AD:DP:GQ:PL	0/1:25,18:43:99:505,0,671	scaffold25253_cov62	GLEAN	mRNA	102042	107379	0.76	+	.	ID=Soaet10009047
scaffold25253_cov62	108716	.	C	T	960.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.33;SOR=1.022;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold25253_cov62_107773_108135|GENE_EXON_scaffold25253_cov62_107773_108135|transcript|Soaet10009048|protein_coding|3/4|c.569+5G>A||||||,T|downstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_102042_102332|GENE_EXON_scaffold25253_cov62_102042_102332|transcript|Soaet10009047|protein_coding||c.*1337C>T|||||1337|	GT:AD:DP:GQ:PL	1/1:0,26:26:72:989,72,0	scaffold25253_cov62	GLEAN	mRNA	107773	109578	0.79	-	.	ID=Soaet10009048
scaffold25253_cov62	119007	.	T	A	850.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=28.36;SOR=0.826;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_118620_118970|GENE_EXON_scaffold25253_cov62_118620_118970|transcript|Soaet10009049|protein_coding|4/4|c.781-37A>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:63:879,63,0	scaffold25253_cov62	GLEAN	mRNA	118620	120085	0.79	-	.	ID=Soaet10009049
scaffold25253_cov62	119273	.	A	G	993.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.39;SOR=1.675;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold25253_cov62_118620_118970|GENE_EXON_scaffold25253_cov62_118620_118970|transcript|Soaet10009049|protein_coding|3/4|c.570-6T>C||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:72:1022,72,0	scaffold25253_cov62	GLEAN	mRNA	118620	120085	0.79	-	.	ID=Soaet10009049
scaffold25253_cov62	131122	.	T	C	446.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SOR=0.804;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_130439_130801|GENE_EXON_scaffold25253_cov62_130439_130801|transcript|Soaet10009051|protein_coding|6/6|c.1062+136A>G||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:33:475,33,0	scaffold25253_cov62	GLEAN	mRNA	130439	134304	0.75	-	.	ID=Soaet10009051
scaffold25253_cov62	131645	.	C	T	774.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SOR=0.922;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_130439_130801|GENE_EXON_scaffold25253_cov62_130439_130801|transcript|Soaet10009051|protein_coding|5/6|c.851+161G>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:57:803,57,0	scaffold25253_cov62	GLEAN	mRNA	130439	134304	0.75	-	.	ID=Soaet10009051
scaffold25253_cov62	131649	.	A	T	808.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.11;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_130439_130801|GENE_EXON_scaffold25253_cov62_130439_130801|transcript|Soaet10009051|protein_coding|5/6|c.851+157T>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:837,60,0	scaffold25253_cov62	GLEAN	mRNA	130439	134304	0.75	-	.	ID=Soaet10009051
scaffold25253_cov62	131650	.	A	T	738.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.55;SOR=0.941;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_130439_130801|GENE_EXON_scaffold25253_cov62_130439_130801|transcript|Soaet10009051|protein_coding|5/6|c.851+156T>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:26:54:767,54,0	scaffold25253_cov62	GLEAN	mRNA	130439	134304	0.75	-	.	ID=Soaet10009051
scaffold25253_cov62	132688	.	C	G	1215.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.86;SOR=1.270;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_130439_130801|GENE_EXON_scaffold25253_cov62_130439_130801|transcript|Soaet10009051|protein_coding|4/7|c.662G>C|p.Arg221Thr|662/1425|662/1425|221/474||	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1244,90,0	scaffold25253_cov62	GLEAN	mRNA	130439	134304	0.75	-	.	ID=Soaet10009051
scaffold25253_cov62	162185	.	C	T	784.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SOR=0.756;ANN=T|missense_variant|MODERATE|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|5/5|c.1963G>A|p.Gly655Arg|1963/1983|1963/1983|655/660||	GT:AD:DP:GQ:PL	1/1:0,31:31:63:813,63,0	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	163310	.	G	C	1202.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.84;SOR=1.387;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding||c.-4691G>C|||||4691|,C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|3/4|c.979+34C>G||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1231,87,0	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	163847	.	G	A	590.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.54;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|3/5|c.476C>T|p.Pro159Leu|476/1983|476/1983|159/660||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding||c.-4154G>A|||||4154|	GT:AD:DP:GQ:PL	1/1:0,20:20:45:619,45,0	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	163851	.	T	G	684.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.24;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|3/5|c.472A>C|p.Thr158Pro|472/1983|472/1983|158/660||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding||c.-4150T>G|||||4150|	GT:AD:DP:GQ:PL	1/1:0,20:20:51:713,51,0	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	163852	.	C	A	661.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.09;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|3/5|c.471G>T|p.Gln157His|471/1983|471/1983|157/660||,A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding||c.-4149C>A|||||4149|	GT:AD:DP:GQ:PL	1/1:0,20:20:51:690,51,0	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	163853	.	T	C	681.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.09;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|3/5|c.470A>G|p.Gln157Arg|470/1983|470/1983|157/660||,C|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding||c.-4148T>C|||||4148|	GT:AD:DP:GQ:PL	1/1:0,20:20:51:710,51,0	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	164196	.	C	T	1166.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.53;SOR=1.270;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding||c.-3805C>T|||||3805|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|2/4|c.274+79G>A||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1195,84,0	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	164417	.	C	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.62;ReadPosRankSum=-0.695;SOR=0.395;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding|2/5|c.132G>C|p.Lys44Asn|132/1983|132/1983|44/660||,G|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding||c.-3584C>G|||||3584|	GT:AD:DP:GQ:PL	0/1:9,18:27:99:531,0,270	scaffold25253_cov62	GLEAN	mRNA	162165	164634	1.00	-	.	ID=Soaet10009054
scaffold25253_cov62	168393	.	C	CT	572.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;RPA=2,3;RU=T;SOR=1.911;STR;ANN=CT|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-3760_-3759insA|||||3760|,CT|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.339+54_339+55insT||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:45:610,45,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	168889	.	C	A	446.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.28;SOR=0.804;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4255G>T|||||4255|,A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-420C>A||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:33:475,33,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	168907	.	T	TCATC	908.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.21;RPA=1,2;RU=CATC;SOR=0.976;STR;ANN=TCATC|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4274_-4273insGATG|||||4274|,TCATC|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-402_340-401insCATC||||||	GT:AD:DP:GQ:PL	1/1:0,14:15:42:946,42,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	168915	.	A	T	409.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SOR=0.941;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4281T>A|||||4281|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-394A>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:33:438,33,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	168979	.	T	A	435.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.05;SOR=1.112;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4345A>T|||||4345|,A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-330T>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:464,33,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	169041	.	C	T	348.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.88;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4407G>A|||||4407|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-268C>T||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:27:377,27,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	169147	.	C	T	439.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.32;SOR=0.818;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4513G>A|||||4513|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-162C>T||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:468,33,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	169165	.	G	T	468.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.25;SOR=0.818;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4531C>A|||||4531|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-144G>T||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:36:497,36,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	169206	.	C	T	360.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.75;SOR=0.836;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4572G>A|||||4572|,T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-103C>T||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:30:389,30,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	169223	.	CAA	C	208.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=10;ExcessHet=3.0103;FS=4.260;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.03;RPA=12,10;RU=A;ReadPosRankSum=-0.887;SOR=1.447;STR;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold25253_cov62_162165_162217|GENE_EXON_scaffold25253_cov62_162165_162217|transcript|Soaet10009054|protein_coding||c.-4591_-4590delTT|||||4590|,C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|1/4|c.340-85_340-84delAA||||||	GT:AD:DP:GQ:PL	1/1:1,7:10:9:245,9,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	170149	.	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.47;SOR=0.892;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|3/4|c.505-165C>T||||||	GT:AD:DP:GQ:PL	1/1:0,42:42:90:1266,90,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	170187	.	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.62;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|3/4|c.505-127C>T||||||	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1594,114,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	170294	.	T	A	1178.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SOR=0.752;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|3/4|c.505-20T>A||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1207,87,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	170309	.	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.91;SOR=0.693;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|3/4|c.505-5T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:93:1285,93,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	170939	.	T	A	760.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.08;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.1130T>A|p.Phe377Tyr|1130/2745|1130/2745|377/914||	GT:AD:DP:GQ:PL	1/1:0,23:23:57:789,57,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	171774	.	C	A	975.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.48;SOR=0.892;ANN=A|synonymous_variant|LOW|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.1965C>A|p.Ile655Ile|1965/2745|1965/2745|655/914||	GT:AD:DP:GQ:PL	1/1:0,31:31:72:1004,72,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	171827	.	A	G	1023.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.02;SOR=0.752;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.2018A>G|p.Asp673Gly|2018/2745|2018/2745|673/914||	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1052,75,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	171832	.	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.55;SOR=0.811;ANN=G|missense_variant|MODERATE|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.2023A>G|p.Thr675Ala|2023/2745|2023/2745|675/914||	GT:AD:DP:GQ:PL	1/1:0,34:35:78:1067,78,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	171897	.	G	C	934.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.21;SOR=1.681;ANN=C|synonymous_variant|LOW|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.2088G>C|p.Leu696Leu|2088/2745|2088/2745|696/914||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:963,69,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	171903	.	A	G	964.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.047;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.15;ReadPosRankSum=1.084;SOR=0.569;ANN=G|synonymous_variant|LOW|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.2094A>G|p.Thr698Thr|2094/2745|2094/2745|698/914||	GT:AD:DP:GQ:PL	1/1:1,31:33:72:993,72,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172062	.	A	G	832.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.03;SOR=1.445;ANN=G|synonymous_variant|LOW|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.2253A>G|p.Ser751Ser|2253/2745|2253/2745|751/914||	GT:AD:DP:GQ:PL	1/1:0,26:26:63:861,63,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172181	.	G	A	946.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.65;SOR=1.071;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/5|c.2372G>A|p.Arg791Lys|2372/2745|2372/2745|791/914||	GT:AD:DP:GQ:PL	1/1:0,29:29:69:975,69,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172324	.	C	T	829.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.73;SOR=0.922;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2441+74C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:858,63,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172372	.	C	T	570.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SOR=0.914;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2441+122C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:42:599,42,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172435	.	G	A	550.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.40;SOR=0.804;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2441+185G>A||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:42:579,42,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172485	.	C	T	605.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;SOR=0.793;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2441+235C>T||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:45:634,45,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172537	.	G	A	421.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SOR=1.061;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2441+287G>A||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:33:450,33,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172551	.	G	A	362.78	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2441+301G>A||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:27:391,27,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172585	.	T	C	507.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.74;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2441+335T>C||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:536,39,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172835	.	T	C	404.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.98;SOR=1.112;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2442-556T>C||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:30:433,30,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172841	.	A	AG	644.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.00;SOR=1.112;ANN=AG|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2442-550_2442-549insG||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:45:682,45,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172916	.	T	C	517.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=34.52;SOR=0.818;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2442-475T>C||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:39:546,39,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	172951	.	T	C	482.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=28.40;SOR=1.061;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2442-440T>C||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:36:511,36,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	173007	.	C	T	445.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=1;QD=24.76;SOR=1.061;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|4/4|c.2442-384C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:33:474,33,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	173457	.	G	A	548.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=28.88;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|5/5|c.2508G>A|p.Gly836Gly|2508/2745|2508/2745|836/914||	GT:AD:DP:GQ:PL	1/1:0,19:19:42:577,42,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	173512	.	T	A	324.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=32.48;SOR=4.804;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|5/5|c.2563T>A|p.Phe855Ile|2563/2745|2563/2745|855/914||	GT:AD:DP:GQ:PL	1/1:0,10:10:27:353,27,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	173616	.	T	G	45.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=11.44;SOR=3.258;ANN=G|synonymous_variant|LOW|EXON_scaffold25253_cov62_168001_168339|GENE_EXON_scaffold25253_cov62_168001_168339|transcript|Soaet10009055|protein_coding|5/5|c.2667T>G|p.Ser889Ser|2667/2745|2667/2745|889/914||	GT:AD:DP:GQ:PL	1/1:0,4:4:6:73,6,0	scaffold25253_cov62	GLEAN	mRNA	168001	173694	0.58	+	.	ID=Soaet10009055
scaffold25253_cov62	180051	.	C	T	554.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SOR=0.874;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|6/6|c.2559-33G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:42:583,42,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180074	.	T	C	597.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.47;SOR=0.990;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|6/6|c.2559-56A>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:45:626,45,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180107	.	G	C	670.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.28;SOR=0.914;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|6/6|c.2558+39C>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:51:699,51,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180379	.	A	G	849.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=32.68;SOR=1.220;ANN=G|synonymous_variant|LOW|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|6/7|c.2325T>C|p.Phe775Phe|2325/2799|2325/2799|775/932||	GT:AD:DP:GQ:PL	1/1:0,26:26:63:878,63,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180449	.	G	T	980.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.74;MQ0=0;QD=33.82;SOR=1.071;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2321-66C>A||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:72:1009,72,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180488	.	CAATGGTTT	C	2487.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=25.86;RPA=2,1;RU=AATGGTTT;SOR=0.941;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2321-113_2321-106delAAACCATT||||||	GT:AD:DP:GQ:PL	1/1:0,25:26:75:2525,75,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180538	.	A	T	776.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.77;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2321-155T>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:57:805,57,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180620	.	A	G	627.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6551;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.53;SOR=1.329;ANN=G|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2321-237T>C||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:48:656,48,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180708	.	A	G	479.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2320+221T>C||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:508,36,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180713	.	C	A	505.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.61;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2320+216G>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:534,39,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180725	.	C	T	626.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.82;SOR=0.914;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2320+204G>A||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:48:655,48,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180732	.	A	C	499.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.32;SOR=0.818;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2320+197T>G||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:39:528,39,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180778	.	G	A	608.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.82;SOR=1.493;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2320+151C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:48:637,48,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180859	.	C	T	644.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SOR=1.127;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/6|c.2320+70G>A||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:48:673,48,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	180939	.	A	T	697.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.72;SOR=1.329;ANN=T|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.2310T>A|p.Ser770Arg|2310/2799|2310/2799|770/932||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:726,51,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181458	.	T	A	741.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.732;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.93;ReadPosRankSum=0.672;SOR=0.223;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1791A>T|p.Lys597Asn|1791/2799|1791/2799|597/932||	GT:AD:DP:GQ:PL	1/1:1,30:31:54:770,54,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181464	.	A	C	772.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1785T>G|p.Leu595Leu|1785/2799|1785/2799|595/932||	GT:AD:DP:GQ:PL	1/1:0,30:30:57:801,57,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181593	.	C	T	1009.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.70;SOR=1.244;ANN=T|synonymous_variant|LOW|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1656G>A|p.Arg552Arg|1656/2799|1656/2799|552/932||	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1038,78,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181630	.	T	A	884.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SOR=0.880;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1619A>T|p.Glu540Val|1619/2799|1619/2799|540/932||	GT:AD:DP:GQ:PL	1/1:0,33:33:66:913,66,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181691	.	G	T	1083.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1558C>A|p.His520Asn|1558/2799|1558/2799|520/932||	GT:AD:DP:GQ:PL	1/1:0,34:35:81:1112,81,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181736	.	C	T	1109.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.64;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1513G>A|p.Ala505Thr|1513/2799|1513/2799|505/932||	GT:AD:DP:GQ:PL	1/1:0,34:35:81:1138,81,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181763	.	G	C	1017.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.863;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.51;ReadPosRankSum=1.734;SOR=0.323;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1486C>G|p.Leu496Val|1486/2799|1486/2799|496/932||	GT:AD:DP:GQ:PL	1/1:1,36:37:41:1046,41,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181815	.	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.63;SOR=1.352;ANN=T|synonymous_variant|LOW|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|5/7|c.1434G>A|p.Glu478Glu|1434/2799|1434/2799|478/932||	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1072,78,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	181935	.	G	A	517.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.46;SOR=0.804;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|4/6|c.1397-83C>T||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:39:546,39,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	182227	.	A	C	588.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.63;SOR=1.061;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|4/7|c.1304T>G|p.Leu435Arg|1304/2799|1304/2799|435/932||	GT:AD:DP:GQ:PL	1/1:0,17:17:45:617,45,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	182458	.	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.84;SOR=1.112;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|4/7|c.1073A>G|p.Lys358Arg|1073/2799|1073/2799|358/932||	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1079,78,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	182670	.	G	A	679.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.56;SOR=0.776;ANN=A|synonymous_variant|LOW|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|4/7|c.861C>T|p.Leu287Leu|861/2799|861/2799|287/932||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:708,51,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	182751	.	T	C	720.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.03;SOR=0.859;ANN=C|synonymous_variant|LOW|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|4/7|c.780A>G|p.Ser260Ser|780/2799|780/2799|260/932||	GT:AD:DP:GQ:PL	1/1:0,24:24:54:749,54,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	182964	.	T	A	625.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.4864;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;QD=27.21;SOR=0.963;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-17A>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:45:654,45,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	182969	.	G	A	613.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.4864;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;QD=26.69;SOR=0.963;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-22C>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:45:642,45,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	182973	.	G	GAAA	791.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;QD=32.43;RPA=10,13;RU=A;SOR=1.292;STR;ANN=GAAA|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-27_584-26insTTT||||||	GT:AD:DP:GQ:PL	1/1:0,19:23:57:829,57,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183332	.	C	T	350.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.23;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-385G>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:27:379,27,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183344	.	AT	A	328.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.54;RPA=3,2;RU=T;SOR=1.402;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-398delA||||||	GT:AD:DP:GQ:PL	1/1:0,9:10:27:366,27,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183354	.	G	T	220.84	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.60;SOR=1.863;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-407C>A||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:18:249,18,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183360	.	T	TTTTTTA	640.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.61;SOR=1.863;ANN=TTTTTTA|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-414_584-413insTAAAAA||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:24:678,24,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183377	.	T	C	212.84	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SOR=1.085;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-430A>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:18:241,18,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183378	.	G	A	263.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SOR=1.085;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-431C>T||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:21:292,21,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183418	.	ACT	A	722.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;RPA=2,1;RU=CT;SOR=1.473;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-473_584-472delAG||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:45:760,45,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183436	.	T	C	637.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.06;SOR=1.863;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-489A>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:48:666,48,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183474	.	AAC	A	1015.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=29.14;SOR=1.981;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-529_584-528delGT||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:57:1053,57,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183480	.	T	C	726.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=34.61;SOR=1.508;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-533A>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:54:755,54,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183521	.	G	C	783.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=32.66;SOR=1.802;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-574C>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:26:60:812,60,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183540	.	T	A	702.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;SOR=0.963;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-593A>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:731,51,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183619	.	G	A	866.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.10;SOR=0.765;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-672C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:895,63,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183694	.	G	A	997.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=29.35;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-747C>T||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1026,75,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183720	.	G	A	898.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.10;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-773C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:29:69:927,69,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183736	.	C	T	1053.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.99;SOR=0.811;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-789G>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:78:1082,78,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183818	.	T	G	966.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.19;SOR=1.214;ANN=G|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-871A>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:72:995,72,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183819	.	T	C	901.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.06;SOR=1.143;ANN=C|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-872A>G||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:66:930,66,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183834	.	C	T	803.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SOR=1.143;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.584-887G>A||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:60:832,60,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	183946	.	G	T	488.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.55;ReadPosRankSum=0.218;SOR=0.829;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.583+809C>A||||||	GT:AD:DP:GQ:PL	1/1:1,15:16:39:517,39,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184096	.	G	A	911.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.49;SOR=0.957;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.583+659C>T||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:66:940,66,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184144	.	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.56;SOR=0.954;ANN=T|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.583+611G>A||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:87:1240,87,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184151	.	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SOR=0.843;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.583+604C>T||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:87:1233,87,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184664	.	GGA	G	774.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=34.98;SOR=0.818;ANN=G|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.583+89_583+90delTC||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:45:812,45,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184680	.	T	A	398.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=24.92;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/6|c.583+75A>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:30:427,30,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184756	.	G	C	56.74	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=0;QD=9.46;SOR=2.303;ANN=C|missense_variant&splice_region_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/7|c.582C>G|p.Asn194Lys|582/2799|582/2799|194/932||	GT:AD:DP:GQ:PL	1/1:0,6:6:6:84,6,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184826	.	T	C	263.8	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=32.98;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/7|c.512A>G|p.Gln171Arg|512/2799|512/2799|171/932||	GT:AD:DP:GQ:PL	1/1:0,8:8:21:292,21,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184883	.	T	A	684.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=32.61;SOR=0.990;ANN=A|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/7|c.455A>T|p.Tyr152Phe|455/2799|455/2799|152/932||	GT:AD:DP:GQ:PL	1/1:0,21:21:51:713,51,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	184892	.	T	C	655.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=28.51;SOR=0.776;ANN=C|missense_variant|MODERATE|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|3/7|c.446A>G|p.Tyr149Cys|446/2799|446/2799|149/932||	GT:AD:DP:GQ:PL	1/1:0,23:23:48:684,48,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	185084	.	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=33.66;SOR=0.976;ANN=A|intron_variant|MODIFIER|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|2/6|c.274-20C>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1038,75,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold25253_cov62	185572	.	A	C	638.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.94;SOR=0.892;ANN=C|synonymous_variant|LOW|EXON_scaffold25253_cov62_179778_180018|GENE_EXON_scaffold25253_cov62_179778_180018|transcript|Soaet10009057|protein_coding|1/7|c.12T>G|p.Ser4Ser|12/2799|12/2799|4/932||	GT:AD:DP:GQ:PL	1/1:0,20:20:48:667,48,0	scaffold25253_cov62	GLEAN	mRNA	179778	185583	0.49	-	.	ID=Soaet10009057
scaffold33109_cov62	4693	.	A	C	938.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=33.53;SOR=0.836;ANN=C|synonymous_variant|LOW|EXON_scaffold33109_cov62_4690_5097|GENE_EXON_scaffold33109_cov62_4690_5097|transcript|Soaet10008446|protein_coding|1/1|c.405T>G|p.Leu135Leu|405/408|405/408|135/135||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:967,69,0	scaffold33109_cov62	GLEAN	mRNA	4690	5097	1.00	-	.	ID=Soaet10008446
scaffold33109_cov62	4706	.	G	A	933.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=33.35;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold33109_cov62_4690_5097|GENE_EXON_scaffold33109_cov62_4690_5097|transcript|Soaet10008446|protein_coding|1/1|c.392C>T|p.Ser131Leu|392/408|392/408|131/135||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:962,69,0	scaffold33109_cov62	GLEAN	mRNA	4690	5097	1.00	-	.	ID=Soaet10008446
scaffold33109_cov62	4769	.	G	A	751.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=0;MQRankSum=2.075;QD=30.06;ReadPosRankSum=-0.150;SOR=0.549;ANN=A|missense_variant|MODERATE|EXON_scaffold33109_cov62_4690_5097|GENE_EXON_scaffold33109_cov62_4690_5097|transcript|Soaet10008446|protein_coding|1/1|c.329C>T|p.Ser110Leu|329/408|329/408|110/135||	GT:AD:DP:GQ:PL	0/1:2,23:25:7:779,0,7	scaffold33109_cov62	GLEAN	mRNA	4690	5097	1.00	-	.	ID=Soaet10008446
scaffold33109_cov62	4905	.	T	C	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-3.788;QD=0.51;ReadPosRankSum=0.106;SOR=0.784;ANN=C|missense_variant|MODERATE|EXON_scaffold33109_cov62_4690_5097|GENE_EXON_scaffold33109_cov62_4690_5097|transcript|Soaet10008446|protein_coding|1/1|c.193A>G|p.Lys65Glu|193/408|193/408|65/135||	GT:AD:DP:GQ:PL	0/1:17,3:20:38:38,0,545	scaffold33109_cov62	GLEAN	mRNA	4690	5097	1.00	-	.	ID=Soaet10008446
scaffold33109_cov62	5054	.	G	A	720.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.34;SOR=1.708;ANN=A|missense_variant|MODERATE|EXON_scaffold33109_cov62_4690_5097|GENE_EXON_scaffold33109_cov62_4690_5097|transcript|Soaet10008446|protein_coding|1/1|c.44C>T|p.Pro15Leu|44/408|44/408|15/135||	GT:AD:DP:GQ:PL	1/1:0,23:23:54:749,54,0	scaffold33109_cov62	GLEAN	mRNA	4690	5097	1.00	-	.	ID=Soaet10008446
scaffold33109_cov62	163687	.	A	G	846.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.87;SOR=3.014;ANN=G|missense_variant|MODERATE|EXON_scaffold33109_cov62_163448_170968|GENE_EXON_scaffold33109_cov62_163448_170968|transcript|Soaet10008450|protein_coding|1/1|c.7282T>C|p.Trp2428Arg|7282/7521|7282/7521|2428/2506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:875,63,0	scaffold33109_cov62	GLEAN	mRNA	163448	170968	0.97	-	.	ID=Soaet10008450
scaffold33109_cov62	163690	.	G	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.599;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold33109_cov62_163448_170968|GENE_EXON_scaffold33109_cov62_163448_170968|transcript|Soaet10008450|protein_coding|1/1|c.7279C>T|p.Pro2427Ser|7279/7521|7279/7521|2427/2506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:364,0,401	scaffold33109_cov62	GLEAN	mRNA	163448	170968	0.97	-	.	ID=Soaet10008450
scaffold33109_cov62	170466	.	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DP=222;Dels=0.00;ExcessHet=3.0103;FS=55.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.73;MQ0=171;MQRankSum=4.625;QD=0.87;ReadPosRankSum=-0.272;SOR=4.395;ANN=G|missense_variant|MODERATE|EXON_scaffold33109_cov62_163448_170968|GENE_EXON_scaffold33109_cov62_163448_170968|transcript|Soaet10008450|protein_coding|1/1|c.503T>C|p.Ile168Thr|503/7521|503/7521|168/2506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:211,10:222:99:221,0,623	scaffold33109_cov62	GLEAN	mRNA	163448	170968	0.97	-	.	ID=Soaet10008450
scaffold33109_cov62	170866	.	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=1;QD=32.46;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold33109_cov62_163448_170968|GENE_EXON_scaffold33109_cov62_163448_170968|transcript|Soaet10008450|protein_coding|1/1|c.103A>G|p.Thr35Ala|103/7521|103/7521|35/2506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1424,102,0	scaffold33109_cov62	GLEAN	mRNA	163448	170968	0.97	-	.	ID=Soaet10008450
scaffold33109_cov62	170943	.	T	C	1496.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.85;SOR=0.823;ANN=C|missense_variant|MODERATE|EXON_scaffold33109_cov62_163448_170968|GENE_EXON_scaffold33109_cov62_163448_170968|transcript|Soaet10008450|protein_coding|1/1|c.26A>G|p.His9Arg|26/7521|26/7521|9/2506||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1525,108,0	scaffold33109_cov62	GLEAN	mRNA	163448	170968	0.97	-	.	ID=Soaet10008450
scaffold33109_cov62	197169	.	T	C	602.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.14;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold33109_cov62_197140_197382|GENE_EXON_scaffold33109_cov62_197140_197382|transcript|Soaet10008452|protein_coding|1/1|c.214A>G|p.Lys72Glu|214/243|214/243|72/80||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:631,45,0	scaffold33109_cov62	GLEAN	mRNA	197140	197382	0.97	-	.	ID=Soaet10008452
scaffold33109_cov62	206640	.	A	G	547.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.43;SOR=1.179;ANN=G|synonymous_variant|LOW|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.1578T>C|p.Cys526Cys|1578/1644|1578/1644|526/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:576,42,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	206929	.	C	A	840.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=31.14;SOR=1.302;ANN=A|missense_variant|MODERATE|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.1289G>T|p.Ser430Ile|1289/1644|1289/1644|430/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:869,66,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	207003	.	A	G	880.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=1;QD=33.88;SOR=1.609;ANN=G|synonymous_variant|LOW|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.1215T>C|p.Ala405Ala|1215/1644|1215/1644|405/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:909,66,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	207190	.	T	C	757.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.44;SOR=1.085;ANN=C|missense_variant|MODERATE|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.1028A>G|p.Asn343Ser|1028/1644|1028/1644|343/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:786,57,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	207273	.	G	T	718.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.64;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.945C>A|p.Ser315Arg|945/1644|945/1644|315/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:54:747,54,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	207429	.	T	C	847.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.61;SOR=1.022;ANN=C|synonymous_variant|LOW|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.789A>G|p.Leu263Leu|789/1644|789/1644|263/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:876,63,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	207541	.	C	A	733.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.677G>T|p.Gly226Val|677/1644|677/1644|226/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:54:762,54,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	207635	.	T	C	873.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.95;SOR=0.770;ANN=C|missense_variant|MODERATE|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.583A>G|p.Ile195Val|583/1644|583/1644|195/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:26:66:902,66,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	207929	.	G	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-1.734;SOR=1.022;ANN=A|stop_gained|HIGH|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.289C>T|p.Arg97*|289/1644|289/1644|97/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,10:18:99:289,0,238	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	208061	.	A	G	610.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SOR=0.963;ANN=G|synonymous_variant|LOW|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.157T>C|p.Leu53Leu|157/1644|157/1644|53/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:45:639,45,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold33109_cov62	208137	.	G	A	555.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.88;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold33109_cov62_206574_208217|GENE_EXON_scaffold33109_cov62_206574_208217|transcript|Soaet10008453|protein_coding|1/1|c.81C>T|p.His27His|81/1644|81/1644|27/547||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:584,42,0	scaffold33109_cov62	GLEAN	mRNA	206574	208217	0.97	-	.	ID=Soaet10008453
scaffold36387_cov62	28068	.	A	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.99;ReadPosRankSum=0.599;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_27130_27364|GENE_EXON_scaffold36387_cov62_27130_27364|transcript|Soaet10008583|protein_coding|1/2|c.456T>G|p.Cys152Trp|456/939|456/939|152/312||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_29841_30032|GENE_EXON_scaffold36387_cov62_29841_30032|transcript|Soaet10008584|protein_coding||c.*1773T>G|||||1773|	GT:AD:DP:GQ:PL	0/1:6,10:16:99:332,0,145	scaffold36387_cov62	GLEAN	mRNA	27130	28523	0.99	-	.	ID=Soaet10008583
scaffold36387_cov62	28233	.	G	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.076;SOR=1.022;ANN=A|synonymous_variant|LOW|EXON_scaffold36387_cov62_27130_27364|GENE_EXON_scaffold36387_cov62_27130_27364|transcript|Soaet10008583|protein_coding|1/2|c.291C>T|p.Thr97Thr|291/939|291/939|97/312||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_29841_30032|GENE_EXON_scaffold36387_cov62_29841_30032|transcript|Soaet10008584|protein_coding||c.*1608C>T|||||1608|	GT:AD:DP:GQ:PL	0/1:9,11:20:99:248,0,256	scaffold36387_cov62	GLEAN	mRNA	27130	28523	0.99	-	.	ID=Soaet10008583
scaffold36387_cov62	28341	.	A	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-0.345;SOR=1.781;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_27130_27364|GENE_EXON_scaffold36387_cov62_27130_27364|transcript|Soaet10008583|protein_coding|1/2|c.183T>G|p.Asp61Glu|183/939|183/939|61/312||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_29841_30032|GENE_EXON_scaffold36387_cov62_29841_30032|transcript|Soaet10008584|protein_coding||c.*1500T>G|||||1500|	GT:AD:DP:GQ:PL	0/1:9,9:18:99:235,0,248	scaffold36387_cov62	GLEAN	mRNA	27130	28523	0.99	-	.	ID=Soaet10008583
scaffold36387_cov62	30374	.	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.30;ReadPosRankSum=2.987;SOR=1.080;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_27130_27364|GENE_EXON_scaffold36387_cov62_27130_27364|transcript|Soaet10008583|protein_coding||c.-1851C>T|||||1851|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_29841_30032|GENE_EXON_scaffold36387_cov62_29841_30032|transcript|Soaet10008584|protein_coding|3/4|c.269+84C>T||||||	GT:AD:DP:GQ:PL	0/1:20,13:33:99:368,0,588	scaffold36387_cov62	GLEAN	mRNA	29841	31192	0.93	-	.	ID=Soaet10008584
scaffold36387_cov62	30752	.	G	A	871.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.53;SOR=1.697;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_27130_27364|GENE_EXON_scaffold36387_cov62_27130_27364|transcript|Soaet10008583|protein_coding||c.-2229C>T|||||2229|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_29841_30032|GENE_EXON_scaffold36387_cov62_29841_30032|transcript|Soaet10008584|protein_coding|1/4|c.92-30C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:63:900,63,0	scaffold36387_cov62	GLEAN	mRNA	29841	31192	0.93	-	.	ID=Soaet10008584
scaffold36387_cov62	30761	.	A	G	932.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.31;ReadPosRankSum=0.743;SOR=0.643;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_27130_27364|GENE_EXON_scaffold36387_cov62_27130_27364|transcript|Soaet10008583|protein_coding||c.-2238T>C|||||2238|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_29841_30032|GENE_EXON_scaffold36387_cov62_29841_30032|transcript|Soaet10008584|protein_coding|1/4|c.92-39T>C||||||	GT:AD:DP:GQ:PL	1/1:1,27:28:69:961,69,0	scaffold36387_cov62	GLEAN	mRNA	29841	31192	0.93	-	.	ID=Soaet10008584
scaffold36387_cov62	31094	.	A	G	785.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.06;SOR=0.997;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold36387_cov62_29841_30032|GENE_EXON_scaffold36387_cov62_29841_30032|transcript|Soaet10008584|protein_coding|1/4|c.91+8T>C||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_27130_27364|GENE_EXON_scaffold36387_cov62_27130_27364|transcript|Soaet10008583|protein_coding||c.-2571T>C|||||2571|	GT:AD:DP:GQ:PL	1/1:0,28:28:57:814,57,0	scaffold36387_cov62	GLEAN	mRNA	29841	31192	0.93	-	.	ID=Soaet10008584
scaffold36387_cov62	39043	.	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-1.083;QD=7.35;ReadPosRankSum=-0.465;SOR=0.781;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_38987_39133|GENE_EXON_scaffold36387_cov62_38987_39133|transcript|Soaet10008585|protein_coding|2/2|c.94G>A|p.Val32Met|94/150|94/150|32/49||	GT:AD:DP:GQ:PL	0/1:16,12:28:99:234,0,488	scaffold36387_cov62	GLEAN	mRNA	38987	39244	0.60	-	.	ID=Soaet10008585
scaffold36387_cov62	39213	.	A	G	814.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.18;SOR=0.765;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_38987_39133|GENE_EXON_scaffold36387_cov62_38987_39133|transcript|Soaet10008585|protein_coding|1/1|c.3+29T>C||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:843,63,0	scaffold36387_cov62	GLEAN	mRNA	38987	39244	0.60	-	.	ID=Soaet10008585
scaffold36387_cov62	51292	.	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.54;SOR=0.990;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|3/3|c.298A>G|p.Thr100Ala|298/339|298/339|100/112||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*2144A>G|||||2144|	GT:AD:DP:GQ:PL	1/1:0,44:44:93:1284,93,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51332	.	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.14;SOR=0.843;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|3/3|c.258A>G|p.Pro86Pro|258/339|258/339|86/112||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*2104A>G|||||2104|	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1305,96,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51333	.	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.664;SOR=0.540;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|3/3|c.257C>T|p.Pro86Leu|257/339|257/339|86/112||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*2103C>T|||||2103|	GT:AD:DP:GQ:PL	0/1:21,19:40:99:568,0,490	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51363	.	G	A	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.966;HaplotypeScore=2.6961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.45;ReadPosRankSum=1.024;SOR=0.518;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|3/3|c.227C>T|p.Thr76Met|227/339|227/339|76/112||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*2073C>T|||||2073|	GT:AD:DP:GQ:PL	0/1:18,17:35:99:464,0,536	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51372	.	C	G	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.412;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-1.207;SOR=1.371;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|3/3|c.218G>C|p.Gly73Ala|218/339|218/339|73/112||,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*2064G>C|||||2064|	GT:AD:DP:GQ:PL	0/1:16,17:33:99:491,0,462	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51394	.	T	C	829.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.73;SOR=1.302;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|3/3|c.196A>G|p.Ile66Val|196/339|196/339|66/112||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*2042A>G|||||2042|	GT:AD:DP:GQ:PL	1/1:0,27:27:63:858,63,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51556	.	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.507;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.395;SOR=0.537;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1880G>A|||||1880|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|2/2|c.183+90G>A||||||	GT:AD:DP:GQ:PL	0/1:16,13:29:99:348,0,430	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51597	.	T	C	976.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.68;SOR=1.071;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1839A>G|||||1839|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|2/2|c.183+49A>G||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:72:1005,72,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51669	.	T	C	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.74;ReadPosRankSum=-0.153;SOR=0.527;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|2/3|c.160A>G|p.Arg54Gly|160/339|160/339|54/112||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1767A>G|||||1767|	GT:AD:DP:GQ:PL	0/1:8,16:24:99:454,0,183	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51719	.	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.956;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-1.166;SOR=1.787;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|2/3|c.110C>T|p.Thr37Ile|110/339|110/339|37/112||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1717C>T|||||1717|	GT:AD:DP:GQ:PL	0/1:17,8:25:99:194,0,457	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51723	.	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=25;Dels=0.00;ExcessHet=3.0103;FS=7.144;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.07;ReadPosRankSum=1.011;SOR=0.976;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|2/3|c.106G>A|p.Gly36Ser|106/339|106/339|36/112||,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1713G>A|||||1713|	GT:AD:DP:GQ:PL	0/1:8,16:25:99:438,0,200	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51749	.	T	C	874.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.1783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.22;SOR=0.892;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1687A>G|||||1687|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.100-20A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:66:903,66,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51758	.	TC	T	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DP=32;ExcessHet=3.0103;FS=5.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.93;RPA=2,1;RU=C;ReadPosRankSum=0.289;SOR=0.493;STR;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1677delG|||||1677|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.100-30delG||||||	GT:AD:DP:GQ:PL	0/1:11,20:32:99:686,0,374	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51761	.	G	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.884;HaplotypeScore=2.7983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.207;SOR=0.493;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1675C>T|||||1675|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.100-32C>T||||||	GT:AD:DP:GQ:PL	0/1:11,20:31:99:529,0,344	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51783	.	A	C	995.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.45;SOR=1.002;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1653T>G|||||1653|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.100-54T>G||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:75:1024,75,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51815	.	T	C	1087.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.99;SOR=0.818;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1621A>G|||||1621|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.100-86A>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1116,81,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51837	.	G	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-0.222;SOR=0.646;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1599C>T|||||1599|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.100-108C>T||||||	GT:AD:DP:GQ:PL	0/1:12,17:29:99:476,0,358	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51885	.	T	C	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-1.050;SOR=0.818;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1551A>G|||||1551|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.99+115A>G||||||	GT:AD:DP:GQ:PL	0/1:12,15:27:99:412,0,304	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	51998	.	A	ACC	1381.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.55;RPA=2,4;RU=C;SOR=0.693;STR;ANN=ACC|splice_donor_variant&intron_variant|HIGH|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/2|c.99+1_99+2insGG||||||,ACC|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-4958_-4957insCC|||||4957|,ACC|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1437_*1438insGG|||||1437|;LOF=(EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,28:31:84:1419,84,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	52041	.	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.48;SOR=0.752;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/3|c.58T>C|p.Cys20Arg|58/339|58/339|20/112||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-4915A>G|||||4915|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1395T>C|||||1395|	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1100,78,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	52051	.	G	A	899.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=0.760;ANN=A|synonymous_variant|LOW|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding|1/3|c.48C>T|p.His16His|48/339|48/339|16/112||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-4905G>A|||||4905|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.*1385C>T|||||1385|	GT:AD:DP:GQ:PL	1/1:0,29:29:66:928,66,0	scaffold36387_cov62	GLEAN	mRNA	51251	52098	0.17	-	.	ID=Soaet10008586
scaffold36387_cov62	53468	.	T	C	912.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=30.43;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|13/13|c.1846A>G|p.Lys616Glu|1846/1878|1846/1878|616/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1370A>G|||||1370|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-3488T>C|||||3488|	GT:AD:DP:GQ:PL	1/1:0,30:30:66:941,66,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	53481	.	C	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.565;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=0.273;QD=14.54;ReadPosRankSum=0.270;SOR=0.971;ANN=T|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|13/13|c.1833G>A|p.Pro611Pro|1833/1878|1833/1878|611/625||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1383G>A|||||1383|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-3475C>T|||||3475|	GT:AD:DP:GQ:PL	0/1:11,18:29:99:450,0,320	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	53499	.	T	C	913.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=30.46;SOR=0.826;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|13/13|c.1815A>G|p.Ser605Ser|1815/1878|1815/1878|605/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1401A>G|||||1401|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-3457T>C|||||3457|	GT:AD:DP:GQ:PL	1/1:0,30:30:66:942,66,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	53598	.	CT	C	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;DP=39;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.82;RPA=6,5;RU=T;ReadPosRankSum=1.420;SOR=0.644;STR;ANN=C|frameshift_variant|HIGH|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|13/13|c.1715delA|p.Lys572fs|1715/1878|1715/1878|572/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1501delA|||||1501|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-3357delT|||||3357|;LOF=(EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|1|1.00)	GT:AD:DP:GQ:PL	0/1:18,17:39:99:521,0,537	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	53808	.	T	C	842.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.07;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|12/13|c.1591A>G|p.Lys531Glu|1591/1878|1591/1878|531/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1710A>G|||||1710|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-3148T>C|||||3148|	GT:AD:DP:GQ:PL	1/1:0,24:24:63:871,63,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	53935	.	G	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.219;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.732;SOR=1.952;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1837C>T|||||1837|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-3021G>A|||||3021|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|11/12|c.1572+74C>T||||||	GT:AD:DP:GQ:PL	0/1:15,12:27:99:393,0,438	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54014	.	T	C	922.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.18;SOR=0.765;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|11/13|c.1567A>G|p.Lys523Glu|1567/1878|1567/1878|523/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1916A>G|||||1916|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2942T>C|||||2942|	GT:AD:DP:GQ:PL	1/1:0,27:27:69:951,69,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54039	.	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=1;QD=33.38;SOR=0.976;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|11/13|c.1542A>G|p.Thr514Thr|1542/1878|1542/1878|514/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-1941A>G|||||1941|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2917T>C|||||2917|	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1063,78,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54170	.	A	T	981.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.88;SOR=0.811;ANN=T|splice_donor_variant&intron_variant|HIGH|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|10/12|c.1506+2T>A||||||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2072T>A|||||2072|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2786A>T|||||2786|;LOF=(EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,34:34:72:1010,72,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54189	.	G	A	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.938;QD=12.71;ReadPosRankSum=1.265;SOR=0.677;ANN=A|stop_gained|HIGH|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|10/13|c.1489C>T|p.Gln497*|1489/1878|1489/1878|497/625||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2091C>T|||||2091|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2767G>A|||||2767|;LOF=(EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|1|1.00);NMD=(EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|1|1.00)	GT:AD:DP:GQ:PL	0/1:16,16:32:99:435,0,528	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54308	.	T	C	1056.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=34.09;SOR=1.214;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2210A>G|||||2210|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2648T>C|||||2648|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|9/12|c.1439+25A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1085,78,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54364	.	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.24;ReadPosRankSum=1.092;SOR=0.722;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|9/13|c.1408C>T|p.Arg470Cys|1408/1878|1408/1878|470/625||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2266C>T|||||2266|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2592G>A|||||2592|	GT:AD:DP:GQ:PL	0/1:24,9:33:99:234,0,647	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54386	.	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.607;QD=18.02;ReadPosRankSum=-0.874;SOR=0.874;ANN=T|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|9/13|c.1386G>A|p.Leu462Leu|1386/1878|1386/1878|462/625||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2288G>A|||||2288|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2570C>T|||||2570|	GT:AD:DP:GQ:PL	0/1:10,22:32:99:605,0,197	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54489	.	T	C	1136.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.72;SOR=0.859;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|9/13|c.1283A>G|p.Gln428Arg|1283/1878|1283/1878|428/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2391A>G|||||2391|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2467T>C|||||2467|	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1165,84,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54527	.	T	C	829.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.73;SOR=0.922;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|9/13|c.1245A>G|p.Gln415Gln|1245/1878|1245/1878|415/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2429A>G|||||2429|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2429T>C|||||2429|	GT:AD:DP:GQ:PL	1/1:0,27:27:60:858,60,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54571	.	A	G	654.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.47;SOR=0.963;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2473T>C|||||2473|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2385A>G|||||2385|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|8/12|c.1231-30T>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:48:683,48,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54659	.	C	CG	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=0.000;QD=10.92;RPA=7,8;RU=G;ReadPosRankSum=0.680;SOR=0.859;STR;ANN=CG|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2562_-2561insC|||||2562|,CG|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2297_-2296insG|||||2296|,CG|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4971_-4970insG|||||4970|,CG|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|8/12|c.1230+72_1230+73insC||||||	GT:AD:DP:GQ:PL	0/1:14,13:28:99:332,0,391	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54739	.	C	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=4.9064;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=2;MQRankSum=1.075;QD=14.91;ReadPosRankSum=-0.910;SOR=0.585;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|8/13|c.1223G>T|p.Arg408Leu|1223/1878|1223/1878|408/625||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2641G>T|||||2641|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2217C>A|||||2217|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4891C>A|||||4891|	GT:AD:DP:GQ:PL	0/1:16,21:37:99:580,0,331	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54829	.	T	C	925.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8254;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=1;QD=30.86;SOR=1.071;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|8/13|c.1133A>G|p.Tyr378Cys|1133/1878|1133/1878|378/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2731A>G|||||2731|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2127T>C|||||2127|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4801T>C|||||4801|	GT:AD:DP:GQ:PL	1/1:0,30:30:69:954,69,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54850	.	A	AT	1150.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=33.76;RPA=1,2;RU=T;SOR=1.179;STR;ANN=AT|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2753_-2752insA|||||2753|,AT|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2106_-2105insT|||||2105|,AT|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4780_-4779insT|||||4779|,AT|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|7/12|c.1125-14_1125-13insA||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1188,84,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54885	.	C	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=1;MQRankSum=-0.911;QD=6.16;ReadPosRankSum=0.612;SOR=1.609;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2787G>C|||||2787|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2071C>G|||||2071|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4745C>G|||||4745|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|7/12|c.1125-48G>C||||||	GT:AD:DP:GQ:PL	0/1:23,7:30:99:213,0,510	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54924	.	T	A	996.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=29.32;SOR=0.811;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2826A>T|||||2826|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-2032T>A|||||2032|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4706T>A|||||4706|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|7/12|c.1124+30A>T||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1025,75,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	54961	.	T	C	954.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.10;SOR=0.997;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|7/13|c.1117A>G|p.Met373Val|1117/1878|1117/1878|373/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2863A>G|||||2863|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1995T>C|||||1995|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4669T>C|||||4669|	GT:AD:DP:GQ:PL	1/1:0,28:28:72:983,72,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55026	.	A	C	823.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.68;SOR=0.846;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|7/13|c.1052T>G|p.Ile351Arg|1052/1878|1052/1878|351/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-2928T>G|||||2928|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1930A>C|||||1930|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4604A>C|||||4604|	GT:AD:DP:GQ:PL	1/1:0,26:26:60:852,60,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55332	.	A	G	317.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.48;SOR=1.022;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3234T>C|||||3234|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1624A>G|||||1624|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4298A>G|||||4298|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|6/12|c.832+38T>C||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:346,24,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55376	.	G	C	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=-2.063;QD=1.12;ReadPosRankSum=-1.667;SOR=1.034;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|6/13|c.826C>G|p.Leu276Val|826/1878|826/1878|276/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3278C>G|||||3278|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1580G>C|||||1580|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4254G>C|||||4254|	GT:AD:DP:GQ:PL	0/1:12,3:15:45:45,0,411	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55381	.	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=2.368;QD=26.24;ReadPosRankSum=0.676;SOR=0.560;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|6/13|c.821G>A|p.Arg274Gln|821/1878|821/1878|274/625||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3283G>A|||||3283|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1575C>T|||||1575|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4249C>T|||||4249|	GT:AD:DP:GQ:PL	0/1:3,13:16:42:448,0,42	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55391	.	G	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-2.273;QD=0.65;ReadPosRankSum=0.821;SOR=1.049;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|6/13|c.811C>G|p.Leu271Val|811/1878|811/1878|271/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3293C>G|||||3293|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1565G>C|||||1565|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4239G>C|||||4239|	GT:AD:DP:GQ:PL	0/1:14,3:17:39:39,0,465	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55392	.	T	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-2.273;QD=0.65;ReadPosRankSum=0.821;SOR=1.049;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|6/13|c.810A>G|p.Leu270Leu|810/1878|810/1878|270/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3294A>G|||||3294|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1564T>C|||||1564|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4238T>C|||||4238|	GT:AD:DP:GQ:PL	0/1:14,3:17:39:39,0,478	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55397	.	T	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-2.273;QD=0.65;ReadPosRankSum=1.201;SOR=1.049;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|6/13|c.805A>G|p.Ile269Val|805/1878|805/1878|269/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3299A>G|||||3299|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1559T>C|||||1559|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4233T>C|||||4233|	GT:AD:DP:GQ:PL	0/1:14,3:17:39:39,0,496	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55408	.	G	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-2.371;QD=0.94;ReadPosRankSum=1.491;SOR=1.112;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|6/13|c.794C>T|p.Pro265Leu|794/1878|794/1878|265/625||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3310C>T|||||3310|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1548G>A|||||1548|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4222G>A|||||4222|	GT:AD:DP:GQ:PL	0/1:15,3:18:45:45,0,407	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55554	.	G	A	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.19;ReadPosRankSum=-0.611;SOR=0.714;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3456C>T|||||3456|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1402G>A|||||1402|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4076G>A|||||4076|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-57C>T||||||	GT:AD:DP:GQ:PL	0/1:10,15:25:99:483,0,346	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55569	.	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-1.099;QD=11.66;ReadPosRankSum=0.645;SOR=0.473;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3471C>T|||||3471|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1387G>A|||||1387|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-4061G>A|||||4061|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-72C>T||||||	GT:AD:DP:GQ:PL	0/1:14,10:24:99:308,0,475	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55647	.	G	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9976;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=0;MQRankSum=0.209;QD=12.22;ReadPosRankSum=-0.047;SOR=0.527;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3549C>G|||||3549|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1309G>C|||||1309|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3983G>C|||||3983|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4995C>G|||||4995|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-150C>G||||||	GT:AD:DP:GQ:PL	0/1:9,8:17:99:236,0,286	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55691	.	G	A	948.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.432;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.942;QD=33.88;ReadPosRankSum=-1.612;SOR=0.252;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3593C>T|||||3593|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1265G>A|||||1265|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3939G>A|||||3939|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4951C>T|||||4951|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-194C>T||||||	GT:AD:DP:GQ:PL	1/1:1,27:28:39:977,39,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55720	.	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=32.52;SOR=0.811;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3622A>G|||||3622|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1236T>C|||||1236|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3910T>C|||||3910|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4922A>G|||||4922|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-223A>G||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1134,81,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55726	.	A	G	1130.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=33.26;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3628T>C|||||3628|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1230A>G|||||1230|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3904A>G|||||3904|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4916T>C|||||4916|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-229T>C||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1159,84,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55740	.	C	A	1182.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=31.13;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3642G>T|||||3642|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1216C>A|||||1216|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3890C>A|||||3890|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4902G>T|||||4902|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-243G>T||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1211,87,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55778	.	C	T	1323.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=31.52;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3680G>A|||||3680|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1178C>T|||||1178|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3852C>T|||||3852|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4864G>A|||||4864|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-281G>A||||||	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1352,96,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55865	.	A	T	1276.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.60;SOR=0.798;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3767T>A|||||3767|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1091A>T|||||1091|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3765A>T|||||3765|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4777T>A|||||4777|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.705-368T>A||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1305,93,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55946	.	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.43;SOR=0.954;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3848A>G|||||3848|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-1010T>C|||||1010|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3684T>C|||||3684|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4696A>G|||||4696|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.704+302A>G||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1358,99,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	55975	.	G	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.454;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.60;ReadPosRankSum=-0.853;SOR=0.406;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3877C>T|||||3877|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-981G>A|||||981|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3655G>A|||||3655|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4667C>T|||||4667|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.704+273C>T||||||	GT:AD:DP:GQ:PL	0/1:20,23:43:99:527,0,612	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56055	.	A	C	1609.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.25;SOR=0.735;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-3957T>G|||||3957|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-901A>C|||||901|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3575A>C|||||3575|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4587T>G|||||4587|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.704+193T>G||||||	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1638,117,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56104	.	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=33.85;SOR=0.892;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4006T>C|||||4006|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-852A>G|||||852|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3526A>G|||||3526|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4538T>C|||||4538|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.704+144T>C||||||	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1450,105,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56182	.	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.49;SOR=0.780;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4084C>T|||||4084|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-774G>A|||||774|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3448G>A|||||3448|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4460C>T|||||4460|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.704+66C>T||||||	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1615,117,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56202	.	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.796;SOR=0.941;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4104T>C|||||4104|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-754A>G|||||754|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3428A>G|||||3428|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4440T>C|||||4440|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.704+46T>C||||||	GT:AD:DP:GQ:PL	0/1:30,16:46:99:401,0,944	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56206	.	C	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.189;SOR=0.576;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4108G>A|||||4108|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-750C>T|||||750|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3424C>T|||||3424|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4436G>A|||||4436|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/12|c.704+42G>A||||||	GT:AD:DP:GQ:PL	0/1:30,14:44:99:346,0,931	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56254	.	G	C	1377.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.80;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/13|c.698C>G|p.Thr233Ser|698/1878|698/1878|233/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4156C>G|||||4156|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-702G>C|||||702|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3376G>C|||||3376|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4388C>G|||||4388|	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1406,102,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56371	.	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.92;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|5/13|c.581T>C|p.Phe194Ser|581/1878|581/1878|194/625||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4273T>C|||||4273|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-585A>G|||||585|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3259A>G|||||3259|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4271T>C|||||4271|	GT:AD:DP:GQ:PL	1/1:0,34:34:87:1224,87,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56507	.	C	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.782;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.59;ReadPosRankSum=0.572;SOR=1.389;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|4/13|c.540G>A|p.Met180Ile|540/1878|540/1878|180/625||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4409G>A|||||4409|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-449C>T|||||449|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-3123C>T|||||3123|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*4135G>A|||||4135|	GT:AD:DP:GQ:PL	0/1:12,18:30:99:526,0,302	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56740	.	A	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.80;ReadPosRankSum=0.854;SOR=0.619;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4642T>C|||||4642|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-216A>G|||||216|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2890A>G|||||2890|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3902T>C|||||3902|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|3/12|c.343-36T>C||||||	GT:AD:DP:GQ:PL	0/1:20,17:37:99:539,0,500	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56933	.	G	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=0.847;QD=10.55;ReadPosRankSum=0.851;SOR=0.764;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|3/13|c.329C>T|p.Ser110Phe|329/1878|329/1878|110/625||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4835C>T|||||4835|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.-23G>A|||||23|,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2697G>A|||||2697|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3709C>T|||||3709|	GT:AD:DP:GQ:PL	0/1:21,13:34:99:387,0,548	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56971	.	G	C	1260.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=29.31;SOR=1.148;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|3/13|c.291C>G|p.Phe97Leu|291/1878|291/1878|97/625||,C|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/2|c.16G>C|p.Glu6Gln|16/216|16/216|6/71||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4873C>G|||||4873|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2659G>C|||||2659|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3671C>G|||||3671|	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1289,93,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	56971	.	G	C	1260.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=29.31;SOR=1.148;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|3/13|c.291C>G|p.Phe97Leu|291/1878|291/1878|97/625||,C|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/2|c.16G>C|p.Glu6Gln|16/216|16/216|6/71||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4873C>G|||||4873|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2659G>C|||||2659|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3671C>G|||||3671|	GT:AD:DP:GQ:PL	1/1:0,35:35:93:1289,93,0	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57045	.	G	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.918;HaplotypeScore=15.5502;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=1;MQRankSum=0.000;QD=14.20;ReadPosRankSum=1.199;SOR=1.371;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/2|c.90G>C|p.Leu30Leu|90/216|90/216|30/71||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4947C>G|||||4947|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2585G>C|||||2585|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3597C>G|||||3597|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-46C>G||||||	GT:AD:DP:GQ:PL	0/1:9,15:25:99:369,0,209	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57045	.	G	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.918;HaplotypeScore=15.5502;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=1;MQRankSum=0.000;QD=14.20;ReadPosRankSum=1.199;SOR=1.371;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/2|c.90G>C|p.Leu30Leu|90/216|90/216|30/71||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4947C>G|||||4947|,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2585G>C|||||2585|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3597C>G|||||3597|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-46C>G||||||	GT:AD:DP:GQ:PL	0/1:9,15:25:99:369,0,209	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57081	.	C	G,T	781.77	.	AC=1,1;AF=0.500,0.500;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=34.9038;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=26.96;SOR=1.255;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4983G>C|||||4983|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4983G>A|||||4983|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2549C>G|||||2549|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2549C>T|||||2549|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3561G>C|||||3561|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3561G>A|||||3561|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-82G>C||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-82G>A||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-12C>G||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-12C>T||||||	GT:AD:DP:GQ:PL	1/2:0,9,20:29:99:810,557,536,184,0,133	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57081	.	C	G,T	781.77	.	AC=1,1;AF=0.500,0.500;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=34.9038;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=26.96;SOR=1.255;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4983G>C|||||4983|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4983G>A|||||4983|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2549C>G|||||2549|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2549C>T|||||2549|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3561G>C|||||3561|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3561G>A|||||3561|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-82G>C||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-82G>A||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-12C>G||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-12C>T||||||	GT:AD:DP:GQ:PL	1/2:0,9,20:29:99:810,557,536,184,0,133	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57088	.	A	G	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.773;DP=36;Dels=0.00;ExcessHet=3.0103;FS=44.140;HaplotypeScore=35.8954;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-1.127;QD=10.91;ReadPosRankSum=-1.565;SOR=4.032;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-5A>G||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4990T>C|||||4990|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2542A>G|||||2542|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3554T>C|||||3554|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-89T>C||||||	GT:AD:DP:GQ:PL	0/1:21,15:36:99:421,0,296	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57088	.	A	G	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.773;DP=36;Dels=0.00;ExcessHet=3.0103;FS=44.140;HaplotypeScore=35.8954;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-1.127;QD=10.91;ReadPosRankSum=-1.565;SOR=4.032;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-5A>G||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4990T>C|||||4990|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2542A>G|||||2542|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3554T>C|||||3554|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-89T>C||||||	GT:AD:DP:GQ:PL	0/1:21,15:36:99:421,0,296	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57088	.	A	AG	917.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.99;RPA=6,7;RU=G;SOR=0.941;STR;ANN=AG|splice_region_variant&intron_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-5_109-4insG||||||,AG|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4991_-4990insC|||||4991|,AG|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2542_-2541insG|||||2541|,AG|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3553_*3554insC|||||3553|,AG|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-90_263-89insC||||||	GT:AD:DP:GQ:PL	1/1:0,34:36:99:955,100,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57088	.	A	AG	917.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.99;RPA=6,7;RU=G;SOR=0.941;STR;ANN=AG|splice_region_variant&intron_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|1/1|c.109-5_109-4insG||||||,AG|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_51251_51406|GENE_EXON_scaffold36387_cov62_51251_51406|transcript|Soaet10008586|protein_coding||c.-4991_-4990insC|||||4991|,AG|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2542_-2541insG|||||2541|,AG|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3553_*3554insC|||||3553|,AG|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.263-90_263-89insC||||||	GT:AD:DP:GQ:PL	1/1:0,34:36:99:955,100,0	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57131	.	C	A	1099.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=34.37;ReadPosRankSum=-0.108;SOR=0.249;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.147C>A|p.Ser49Arg|147/216|147/216|49/71||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2499C>A|||||2499|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3511G>T|||||3511|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.262+52G>T||||||	GT:AD:DP:GQ:PL	1/1:1,31:32:81:1128,81,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57131	.	C	A	1099.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=34.37;ReadPosRankSum=-0.108;SOR=0.249;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.147C>A|p.Ser49Arg|147/216|147/216|49/71||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2499C>A|||||2499|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3511G>T|||||3511|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.262+52G>T||||||	GT:AD:DP:GQ:PL	1/1:1,31:32:81:1128,81,0	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57156	.	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.604;SOR=0.758;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.172C>T|p.Arg58Trp|172/216|172/216|58/71||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2474C>T|||||2474|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3486G>A|||||3486|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.262+27G>A||||||	GT:AD:DP:GQ:PL	0/1:16,18:34:99:472,0,493	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57156	.	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.604;SOR=0.758;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.172C>T|p.Arg58Trp|172/216|172/216|58/71||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2474C>T|||||2474|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3486G>A|||||3486|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/12|c.262+27G>A||||||	GT:AD:DP:GQ:PL	0/1:16,18:34:99:472,0,493	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57187	.	T	G	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.64;ReadPosRankSum=1.155;SOR=0.503;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/13|c.258A>C|p.Lys86Asn|258/1878|258/1878|86/625||,G|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.203T>G|p.Phe68Cys|203/216|203/216|68/71||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2443T>G|||||2443|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3455A>C|||||3455|	GT:AD:DP:GQ:PL	0/1:18,19:37:99:533,0,527	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57187	.	T	G	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.64;ReadPosRankSum=1.155;SOR=0.503;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/13|c.258A>C|p.Lys86Asn|258/1878|258/1878|86/625||,G|missense_variant|MODERATE|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.203T>G|p.Phe68Cys|203/216|203/216|68/71||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2443T>G|||||2443|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3455A>C|||||3455|	GT:AD:DP:GQ:PL	0/1:18,19:37:99:533,0,527	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57197	.	T	G	1296.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.13;SOR=0.914;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/13|c.248A>C|p.Lys83Thr|248/1878|248/1878|83/625||,G|synonymous_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.213T>G|p.Ala71Ala|213/216|213/216|71/71||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2433T>G|||||2433|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3445A>C|||||3445|	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1325,93,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57197	.	T	G	1296.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.13;SOR=0.914;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/13|c.248A>C|p.Lys83Thr|248/1878|248/1878|83/625||,G|synonymous_variant|LOW|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding|2/2|c.213T>G|p.Ala71Ala|213/216|213/216|71/71||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2433T>G|||||2433|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3445A>C|||||3445|	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1325,93,0	scaffold36387_cov62	GLEAN	mRNA	56956	57200	1.00	+	.	ID=Soaet10008590
scaffold36387_cov62	57244	.	T	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-1.164;SOR=0.892;ANN=G|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|2/13|c.201A>C|p.Ser67Ser|201/1878|201/1878|67/625||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2386T>G|||||2386|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*44T>G|||||44|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3398A>C|||||3398|	GT:AD:DP:GQ:PL	0/1:20,20:40:99:556,0,549	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57403	.	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=30.04;SOR=0.739;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2227T>C|||||2227|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*203T>C|||||203|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3239A>G|||||3239|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/12|c.169-127A>G||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1320,99,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57548	.	T	C	938.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.45;SOR=0.752;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-2082T>C|||||2082|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*348T>C|||||348|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*3094A>G|||||3094|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/12|c.168+198A>G||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:72:967,72,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57687	.	G	A	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=0.105;QD=13.09;ReadPosRankSum=0.665;SOR=1.136;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-1943G>A|||||1943|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*487G>A|||||487|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*2955C>T|||||2955|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/12|c.168+59C>T||||||	GT:AD:DP:GQ:PL	0/1:20,21:41:99:565,0,540	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57749	.	T	G	1200.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=34.31;SOR=0.869;ANN=G|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/13|c.165A>C|p.Leu55Leu|165/1878|165/1878|55/625||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-1881T>G|||||1881|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*549T>G|||||549|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*2893A>C|||||2893|	GT:AD:DP:GQ:PL	1/1:0,35:35:90:1229,90,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57755	.	T	C	1084.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=31.90;SOR=1.085;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/13|c.159A>G|p.Arg53Arg|159/1878|159/1878|53/625||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-1875T>C|||||1875|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*555T>C|||||555|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*2887A>G|||||2887|	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1113,81,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57775	.	G	A	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.663;SOR=0.760;ANN=A|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/13|c.139C>T|p.Leu47Leu|139/1878|139/1878|47/625||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-1855G>A|||||1855|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*575G>A|||||575|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*2867C>T|||||2867|	GT:AD:DP:GQ:PL	0/1:16,19:35:99:623,0,420	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57789	.	G	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.80;ReadPosRankSum=0.961;SOR=0.566;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/13|c.125C>A|p.Ala42Glu|125/1878|125/1878|42/625||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-1841G>T|||||1841|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*589G>T|||||589|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*2853C>A|||||2853|	GT:AD:DP:GQ:PL	0/1:17,20:37:99:687,0,439	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57808	.	G	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.093;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=1;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.565;SOR=0.796;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/13|c.106C>T|p.Arg36Cys|106/1878|106/1878|36/625||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-1822G>A|||||1822|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*608G>A|||||608|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*2834C>T|||||2834|	GT:AD:DP:GQ:PL	0/1:19,15:34:99:442,0,620	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	57869	.	A	G	969.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.31;SOR=0.818;ANN=G|synonymous_variant|LOW|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding|1/13|c.45T>C|p.Ile15Ile|45/1878|45/1878|15/625||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.-1761A>G|||||1761|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*669A>G|||||669|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*2773T>C|||||2773|	GT:AD:DP:GQ:PL	1/1:0,32:32:75:998,75,0	scaffold36387_cov62	GLEAN	mRNA	53436	57913	0.11	-	.	ID=Soaet10008589
scaffold36387_cov62	59686	.	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=0.843;QD=10.15;ReadPosRankSum=0.000;SOR=0.916;ANN=T|synonymous_variant|LOW|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/4|c.57C>T|p.Ile19Ile|57/405|57/405|19/134||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-1773G>A|||||1773|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*2486C>T|||||2486|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*956G>A|||||956|	GT:AD:DP:GQ:PL	0/1:24,15:39:99:424,0,663	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	59740	.	T	A	1086.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.05;SOR=1.002;ANN=A|synonymous_variant|LOW|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/4|c.111T>A|p.Ile37Ile|111/405|111/405|37/134||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-1827A>T|||||1827|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*2540T>A|||||2540|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*902A>T|||||902|	GT:AD:DP:GQ:PL	1/1:0,35:36:84:1115,84,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	59764	.	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.76;SOR=0.826;ANN=C|synonymous_variant|LOW|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/4|c.135T>C|p.Leu45Leu|135/405|135/405|45/134||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-1851A>G|||||1851|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*2564T>C|||||2564|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*878A>G|||||878|	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1041,75,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	59825	.	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-0.706;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-1912G>A|||||1912|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*2625C>T|||||2625|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*817G>A|||||817|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+43C>T||||||	GT:AD:DP:GQ:PL	0/1:15,15:30:99:441,0,396	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60109	.	A	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-1.116;SOR=1.022;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2196T>A|||||2196|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*2909A>T|||||2909|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*533T>A|||||533|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+327A>T||||||	GT:AD:DP:GQ:PL	0/1:7,6:13:99:144,0,152	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60142	.	A	G	443.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.70;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2229T>C|||||2229|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*2942A>G|||||2942|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*500T>C|||||500|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+360A>G||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:472,33,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60444	.	A	T	187.9	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SOR=1.863;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2531T>A|||||2531|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3244A>T|||||3244|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*198T>A|||||198|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+662A>T||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:15:216,15,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60477	.	G	A	235.84	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SOR=1.085;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2564C>T|||||2564|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3277G>A|||||3277|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*165C>T|||||165|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+695G>A||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:18:264,18,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60598	.	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=9;MQRankSum=-1.921;QD=10.55;ReadPosRankSum=-0.080;SOR=0.169;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2685G>A|||||2685|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3398C>T|||||3398|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*44G>A|||||44|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+816C>T||||||	GT:AD:DP:GQ:PL	0/1:11,14:25:99:292,0,211	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60614	.	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=46.66;MQ0=9;MQRankSum=2.192;QD=8.56;ReadPosRankSum=-0.529;SOR=1.445;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2701T>C|||||2701|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3414A>G|||||3414|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.*28T>C|||||28|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+832A>G||||||	GT:AD:DP:GQ:PL	0/1:16,14:30:99:285,0,311	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60666	.	C	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=-2.282;QD=13.60;ReadPosRankSum=-0.073;SOR=0.770;ANN=T|synonymous_variant|LOW|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|3/3|c.255G>A|p.Ala85Ala|255/279|255/279|85/92||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2753G>A|||||2753|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3466C>T|||||3466|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+884C>T||||||	GT:AD:DP:GQ:PL	0/1:16,17:33:99:477,0,428	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60666	.	C	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=-2.282;QD=13.60;ReadPosRankSum=-0.073;SOR=0.770;ANN=T|synonymous_variant|LOW|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|3/3|c.255G>A|p.Ala85Ala|255/279|255/279|85/92||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2753G>A|||||2753|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3466C>T|||||3466|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+884C>T||||||	GT:AD:DP:GQ:PL	0/1:16,17:33:99:477,0,428	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	60791	.	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.819;QD=13.65;ReadPosRankSum=1.445;SOR=0.538;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|3/3|c.130C>T|p.Pro44Ser|130/279|130/279|44/92||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2878C>T|||||2878|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3591G>A|||||3591|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1009G>A||||||	GT:AD:DP:GQ:PL	0/1:14,18:32:99:465,0,428	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	60791	.	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.819;QD=13.65;ReadPosRankSum=1.445;SOR=0.538;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|3/3|c.130C>T|p.Pro44Ser|130/279|130/279|44/92||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-2878C>T|||||2878|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*3591G>A|||||3591|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1009G>A||||||	GT:AD:DP:GQ:PL	0/1:14,18:32:99:465,0,428	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61246	.	C	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=1.268;QD=16.07;ReadPosRankSum=-0.440;SOR=0.772;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3333G>A|||||3333|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4046C>T|||||4046|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1464C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-302G>A||||||	GT:AD:DP:GQ:PL	0/1:10,14:24:99:414,0,247	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61246	.	C	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=1.268;QD=16.07;ReadPosRankSum=-0.440;SOR=0.772;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3333G>A|||||3333|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4046C>T|||||4046|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1464C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-302G>A||||||	GT:AD:DP:GQ:PL	0/1:10,14:24:99:414,0,247	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61249	.	T	G	694.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.21;SOR=0.776;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3336A>C|||||3336|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4049T>G|||||4049|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1467T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-305A>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:723,51,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61249	.	T	G	694.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.21;SOR=0.776;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3336A>C|||||3336|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4049T>G|||||4049|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1467T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-305A>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:723,51,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61264	.	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-1.090;QD=8.49;ReadPosRankSum=-0.260;SOR=1.209;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3351A>G|||||3351|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4064T>C|||||4064|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1482T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-320A>G||||||	GT:AD:DP:GQ:PL	0/1:15,11:26:99:249,0,412	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61264	.	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-1.090;QD=8.49;ReadPosRankSum=-0.260;SOR=1.209;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3351A>G|||||3351|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4064T>C|||||4064|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1482T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-320A>G||||||	GT:AD:DP:GQ:PL	0/1:15,11:26:99:249,0,412	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61361	.	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-0.583;SOR=0.697;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3448G>A|||||3448|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4161C>T|||||4161|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1579C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-417G>A||||||	GT:AD:DP:GQ:PL	0/1:8,16:24:99:424,0,237	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61361	.	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-0.583;SOR=0.697;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3448G>A|||||3448|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4161C>T|||||4161|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1579C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-417G>A||||||	GT:AD:DP:GQ:PL	0/1:8,16:24:99:424,0,237	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61510	.	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-2.636;QD=2.10;ReadPosRankSum=-0.477;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3597C>A|||||3597|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4310G>T|||||4310|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1728G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-566C>A||||||	GT:AD:DP:GQ:PL	0/1:28,8:36:99:104,0,817	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61510	.	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-2.636;QD=2.10;ReadPosRankSum=-0.477;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3597C>A|||||3597|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4310G>T|||||4310|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1728G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-566C>A||||||	GT:AD:DP:GQ:PL	0/1:28,8:36:99:104,0,817	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61520	.	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-2.819;QD=1.33;ReadPosRankSum=-3.091;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3607C>T|||||3607|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4320G>A|||||4320|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1738G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-576C>T||||||	GT:AD:DP:GQ:PL	0/1:24,6:30:68:68,0,712	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61520	.	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-2.819;QD=1.33;ReadPosRankSum=-3.091;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3607C>T|||||3607|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4320G>A|||||4320|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1738G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-576C>T||||||	GT:AD:DP:GQ:PL	0/1:24,6:30:68:68,0,712	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61573	.	C	T	602.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SOR=1.179;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3660G>A|||||3660|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4373C>T|||||4373|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1791C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-629G>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:45:631,45,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61573	.	C	T	602.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SOR=1.179;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3660G>A|||||3660|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4373C>T|||||4373|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1791C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-629G>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:45:631,45,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61638	.	G	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-1.135;SOR=0.527;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3725C>T|||||3725|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4438G>A|||||4438|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1856G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-694C>T||||||	GT:AD:DP:GQ:PL	0/1:9,14:23:99:417,0,312	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61638	.	G	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-1.135;SOR=0.527;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3725C>T|||||3725|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4438G>A|||||4438|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1856G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-694C>T||||||	GT:AD:DP:GQ:PL	0/1:9,14:23:99:417,0,312	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61760	.	T	C	897.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.25;SOR=1.302;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3847A>G|||||3847|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4560T>C|||||4560|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1978T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-816A>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:66:926,66,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61760	.	T	C	897.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.25;SOR=1.302;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3847A>G|||||3847|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4560T>C|||||4560|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1978T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-816A>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:66:926,66,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61761	.	C	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.903;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.14;ReadPosRankSum=1.634;SOR=0.111;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3848G>A|||||3848|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4561C>T|||||4561|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1979C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-817G>A||||||	GT:AD:DP:GQ:PL	0/1:7,20:27:99:572,0,229	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61761	.	C	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.903;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.14;ReadPosRankSum=1.634;SOR=0.111;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3848G>A|||||3848|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4561C>T|||||4561|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1979C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-817G>A||||||	GT:AD:DP:GQ:PL	0/1:7,20:27:99:572,0,229	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61768	.	C	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.890;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.41;ReadPosRankSum=1.635;SOR=0.198;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3855G>C|||||3855|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4568C>G|||||4568|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1986C>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-824G>C||||||	GT:AD:DP:GQ:PL	0/1:8,21:29:99:591,0,260	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61768	.	C	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.890;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.41;ReadPosRankSum=1.635;SOR=0.198;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3855G>C|||||3855|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4568C>G|||||4568|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+1986C>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-824G>C||||||	GT:AD:DP:GQ:PL	0/1:8,21:29:99:591,0,260	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61811	.	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.64;SOR=0.859;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3898T>C|||||3898|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4611A>G|||||4611|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2029A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-867T>C||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1236,87,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61811	.	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.64;SOR=0.859;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3898T>C|||||3898|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4611A>G|||||4611|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2029A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-867T>C||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1236,87,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61857	.	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.681;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-0.455;SOR=1.665;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3944C>T|||||3944|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4657G>A|||||4657|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2075G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-913C>T||||||	GT:AD:DP:GQ:PL	0/1:21,17:38:99:398,0,537	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61857	.	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.681;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-0.455;SOR=1.665;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3944C>T|||||3944|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4657G>A|||||4657|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2075G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-913C>T||||||	GT:AD:DP:GQ:PL	0/1:21,17:38:99:398,0,537	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61890	.	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.446;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=2;MQRankSum=2.275;QD=7.42;ReadPosRankSum=-1.102;SOR=0.445;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3977G>A|||||3977|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4690C>T|||||4690|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2108C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-946G>A||||||	GT:AD:DP:GQ:PL	0/1:33,17:50:99:399,0,826	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61890	.	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.446;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=2;MQRankSum=2.275;QD=7.42;ReadPosRankSum=-1.102;SOR=0.445;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-3977G>A|||||3977|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4690C>T|||||4690|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2108C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-946G>A||||||	GT:AD:DP:GQ:PL	0/1:33,17:50:99:399,0,826	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	61930	.	C	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5279;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=5;MQRankSum=-7.796;QD=4.14;ReadPosRankSum=0.427;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4017G>C|||||4017|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4730C>G|||||4730|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2148C>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-986G>C||||||	GT:AD:DP:GQ:PL	0/1:42,29:71:99:322,0,1177	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	61930	.	C	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5279;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=5;MQRankSum=-7.796;QD=4.14;ReadPosRankSum=0.427;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4017G>C|||||4017|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4730C>G|||||4730|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2148C>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-986G>C||||||	GT:AD:DP:GQ:PL	0/1:42,29:71:99:322,0,1177	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62033	.	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=27.45;SOR=1.067;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4120T>C|||||4120|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4833A>G|||||4833|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2251A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1089T>C||||||	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1346,99,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62033	.	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=27.45;SOR=1.067;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4120T>C|||||4120|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4833A>G|||||4833|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2251A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1089T>C||||||	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1346,99,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62052	.	A	C	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;DP=38;Dels=0.00;ExcessHet=3.0103;FS=8.179;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=6.086;QD=24.39;ReadPosRankSum=3.124;SOR=0.052;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4139T>G|||||4139|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4852A>C|||||4852|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2270A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1108T>G||||||	GT:AD:DP:GQ:PL	0/1:6,32:38:76:955,0,76	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62052	.	A	C	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;DP=38;Dels=0.00;ExcessHet=3.0103;FS=8.179;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=6.086;QD=24.39;ReadPosRankSum=3.124;SOR=0.052;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4139T>G|||||4139|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4852A>C|||||4852|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.153+2270A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1108T>G||||||	GT:AD:DP:GQ:PL	0/1:6,32:38:76:955,0,76	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62158	.	A	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.96;ReadPosRankSum=1.509;SOR=0.551;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4245T>C|||||4245|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4958A>G|||||4958|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2356A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1214T>C||||||	GT:AD:DP:GQ:PL	0/1:11,20:31:99:492,0,262	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62158	.	A	G	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.96;ReadPosRankSum=1.509;SOR=0.551;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4245T>C|||||4245|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4958A>G|||||4958|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2356A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1214T>C||||||	GT:AD:DP:GQ:PL	0/1:11,20:31:99:492,0,262	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62176	.	T	C	892.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.80;SOR=0.756;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4263A>G|||||4263|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4976T>C|||||4976|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2338T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1232A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:66:921,66,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62176	.	T	C	892.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.80;SOR=0.756;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4263A>G|||||4263|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_56956_57063|GENE_EXON_scaffold36387_cov62_56956_57063|transcript|Soaet10008590|protein_coding||c.*4976T>C|||||4976|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2338T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1232A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:66:921,66,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62314	.	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.12;ReadPosRankSum=0.367;SOR=0.430;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4401G>A|||||4401|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2200C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1370G>A||||||	GT:AD:DP:GQ:PL	0/1:6,18:24:99:463,0,169	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62314	.	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.12;ReadPosRankSum=0.367;SOR=0.430;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4401G>A|||||4401|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2200C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1370G>A||||||	GT:AD:DP:GQ:PL	0/1:6,18:24:99:463,0,169	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62324	.	C	T	643.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SOR=1.022;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4411G>A|||||4411|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2190C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1380G>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:48:672,48,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62324	.	C	T	643.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SOR=1.022;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4411G>A|||||4411|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2190C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1380G>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:48:672,48,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62345	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-0.987;SOR=0.602;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4432C>T|||||4432|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2169G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1401C>T||||||	GT:AD:DP:GQ:PL	0/1:19,6:25:99:186,0,444	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62345	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-0.987;SOR=0.602;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4432C>T|||||4432|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2169G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1401C>T||||||	GT:AD:DP:GQ:PL	0/1:19,6:25:99:186,0,444	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62356	.	C	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.85;ReadPosRankSum=1.611;SOR=0.446;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4443G>A|||||4443|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2158C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1412G>A||||||	GT:AD:DP:GQ:PL	0/1:5,16:21:99:382,0,158	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62356	.	C	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.85;ReadPosRankSum=1.611;SOR=0.446;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4443G>A|||||4443|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2158C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1412G>A||||||	GT:AD:DP:GQ:PL	0/1:5,16:21:99:382,0,158	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62357	.	A	G	597.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.47;SOR=0.784;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4444T>C|||||4444|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2157A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1413T>C||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:45:626,45,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62357	.	A	G	597.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.47;SOR=0.784;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4444T>C|||||4444|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2157A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1413T>C||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:45:626,45,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62373	.	A	G	522.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SOR=0.793;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4460T>C|||||4460|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2141A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1429T>C||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:39:551,39,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62373	.	A	G	522.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SOR=0.793;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4460T>C|||||4460|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2141A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1429T>C||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:39:551,39,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62383	.	G	A	22.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.150;SOR=0.582;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4470C>T|||||4470|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2131G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1439C>T||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:51:51,0,391	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62383	.	G	A	22.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.150;SOR=0.582;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4470C>T|||||4470|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2131G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1439C>T||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:51:51,0,391	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62413	.	A	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.569;SOR=1.793;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4500T>G|||||4500|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2101A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1469T>G||||||	GT:AD:DP:GQ:PL	0/1:5,8:13:99:231,0,105	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62413	.	A	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.569;SOR=1.793;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4500T>G|||||4500|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-2101A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1469T>G||||||	GT:AD:DP:GQ:PL	0/1:5,8:13:99:231,0,105	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62525	.	T	C	330.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.07;SOR=1.270;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4612A>G|||||4612|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1989T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1581A>G||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:27:359,27,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62525	.	T	C	330.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.07;SOR=1.270;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4612A>G|||||4612|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1989T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1581A>G||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:27:359,27,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62578	.	C	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=0.998;QD=6.65;ReadPosRankSum=1.191;SOR=0.368;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4665G>T|||||4665|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1936C>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1634G>T||||||	GT:AD:DP:GQ:PL	0/1:7,5:12:99:108,0,179	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62578	.	C	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=0.998;QD=6.65;ReadPosRankSum=1.191;SOR=0.368;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4665G>T|||||4665|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1936C>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1634G>T||||||	GT:AD:DP:GQ:PL	0/1:7,5:12:99:108,0,179	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62585	.	T	C	272.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6632;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.28;SOR=1.085;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4672A>G|||||4672|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1929T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1641A>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:21:301,21,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62585	.	T	C	272.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6632;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=27.28;SOR=1.085;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4672A>G|||||4672|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1929T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1641A>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:21:301,21,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62638	.	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=2;MQRankSum=-0.615;QD=8.05;ReadPosRankSum=0.832;SOR=0.941;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4725C>T|||||4725|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1876G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1694C>T||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:99:149,0,181	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62638	.	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=2;MQRankSum=-0.615;QD=8.05;ReadPosRankSum=0.832;SOR=0.941;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4725C>T|||||4725|,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1876G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1694C>T||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:99:149,0,181	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62821	.	A	G	475.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SOR=1.179;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4908T>C|||||4908|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1693A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1877T>C||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:36:504,36,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62821	.	A	G	475.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SOR=1.179;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4908T>C|||||4908|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1693A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1877T>C||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:36:504,36,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62864	.	G	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.829;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-0.303;SOR=0.904;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4951C>A|||||4951|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1650G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1920C>A||||||	GT:AD:DP:GQ:PL	0/1:10,10:21:99:292,0,219	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62864	.	G	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.829;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-0.303;SOR=0.904;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4951C>A|||||4951|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1650G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1920C>A||||||	GT:AD:DP:GQ:PL	0/1:10,10:21:99:292,0,219	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62903	.	G	T	577.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SOR=0.963;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4990C>A|||||4990|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1611G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1959C>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:42:606,42,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62903	.	G	T	577.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SOR=0.963;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_53436_53700|GENE_EXON_scaffold36387_cov62_53436_53700|transcript|Soaet10008589|protein_coding||c.-4990C>A|||||4990|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1611G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-1959C>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:42:606,42,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	62965	.	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.26;ReadPosRankSum=2.001;SOR=1.863;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1549C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2021G>A||||||	GT:AD:DP:GQ:PL	0/1:10,8:18:99:213,0,259	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	62965	.	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.26;ReadPosRankSum=2.001;SOR=1.863;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1549C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2021G>A||||||	GT:AD:DP:GQ:PL	0/1:10,8:18:99:213,0,259	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	63133	.	A	G	177.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1381A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2189T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:206,15,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	63133	.	A	G	177.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1381A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2189T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:206,15,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	63295	.	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.52;ReadPosRankSum=0.778;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1219C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2351G>A||||||	GT:AD:DP:GQ:PL	0/1:3,8:11:57:232,0,57	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	63295	.	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.52;ReadPosRankSum=0.778;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-1219C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2351G>A||||||	GT:AD:DP:GQ:PL	0/1:3,8:11:57:232,0,57	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	63696	.	T	G	596.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=29.84;SOR=1.127;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-818T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2752A>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:625,45,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	63696	.	T	G	596.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=29.84;SOR=1.127;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-818T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2752A>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:625,45,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	63882	.	T	C	944.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=30.48;SOR=0.756;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-632T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2938A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:32:69:973,69,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	63882	.	T	C	944.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=30.48;SOR=0.756;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-632T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-2938A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:32:69:973,69,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64037	.	G	A	1111.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=28.51;SOR=0.743;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-477G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3093C>T||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:81:1140,81,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64037	.	G	A	1111.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=28.51;SOR=0.743;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-477G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3093C>T||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:81:1140,81,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64112	.	C	CACA	1694.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.65;SOR=1.071;ANN=CACA|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-402_154-401insACA||||||,CACA|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3169_97-3168insTGT||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1732,87,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64112	.	C	CACA	1694.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.65;SOR=1.071;ANN=CACA|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-402_154-401insACA||||||,CACA|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3169_97-3168insTGT||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1732,87,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64163	.	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-0.661;QD=14.26;ReadPosRankSum=0.546;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-351G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3219C>T||||||	GT:AD:DP:GQ:PL	0/1:8,14:22:99:342,0,242	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64163	.	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-0.661;QD=14.26;ReadPosRankSum=0.546;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-351G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3219C>T||||||	GT:AD:DP:GQ:PL	0/1:8,14:22:99:342,0,242	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64473	.	T	C	950.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.71;SOR=1.473;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-41T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3529A>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:979,69,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64473	.	T	C	950.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.71;SOR=1.473;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-41T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3529A>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:979,69,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64486	.	T	G	943.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.49;SOR=1.112;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-28T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3542A>C||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:972,69,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64486	.	T	G	943.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.49;SOR=1.112;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|1/3|c.154-28T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.97-3542A>C||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:972,69,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64722	.	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=0.965;QD=20.30;ReadPosRankSum=0.652;SOR=0.770;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+89G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3368C>T||||||	GT:AD:DP:GQ:PL	0/1:8,25:33:99:698,0,209	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64722	.	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=0.965;QD=20.30;ReadPosRankSum=0.652;SOR=0.770;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+89G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3368C>T||||||	GT:AD:DP:GQ:PL	0/1:8,25:33:99:698,0,209	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64767	.	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=30.38;SOR=1.209;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+134A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3323T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1122,81,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64767	.	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=30.38;SOR=1.209;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+134A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3323T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1122,81,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64848	.	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=31.49;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+215A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3242T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1162,84,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64848	.	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=31.49;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+215A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3242T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1162,84,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64889	.	G	A	1152.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.791;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=1;MQRankSum=-0.580;QD=27.45;ReadPosRankSum=-1.353;SOR=0.223;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+256G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3201C>T||||||	GT:AD:DP:GQ:PL	1/1:1,41:42:54:1181,54,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64889	.	G	A	1152.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.791;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=1;MQRankSum=-0.580;QD=27.45;ReadPosRankSum=-1.353;SOR=0.223;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+256G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3201C>T||||||	GT:AD:DP:GQ:PL	1/1:1,41:42:54:1181,54,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64943	.	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.138;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.303;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-2.171;QD=10.31;ReadPosRankSum=-0.912;SOR=0.633;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+310C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3147G>A||||||	GT:AD:DP:GQ:PL	0/1:23,15:38:99:420,0,716	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64943	.	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.138;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.303;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-2.171;QD=10.31;ReadPosRankSum=-0.912;SOR=0.633;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+310C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3147G>A||||||	GT:AD:DP:GQ:PL	0/1:23,15:38:99:420,0,716	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	64962	.	T	G	1189.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=29.74;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+329T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3128A>C||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:87:1218,87,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	64962	.	T	G	1189.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=29.74;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+329T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+3128A>C||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:87:1218,87,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65168	.	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;SOR=0.954;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+535T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2922A>G||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:84:1174,84,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65168	.	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;SOR=0.954;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+535T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2922A>G||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:84:1174,84,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65178	.	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.36;SOR=1.040;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+545A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2912T>C||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1220,87,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65178	.	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.36;SOR=1.040;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+545A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2912T>C||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1220,87,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65291	.	A	G	806.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=33.62;SOR=0.859;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+658A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2799T>C||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:835,60,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65291	.	A	G	806.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=33.62;SOR=0.859;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+658A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2799T>C||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:835,60,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65326	.	T	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-1.865;QD=6.96;ReadPosRankSum=0.928;SOR=0.824;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+693T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2764A>C||||||	GT:AD:DP:GQ:PL	0/1:21,9:30:99:237,0,530	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65326	.	T	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-1.865;QD=6.96;ReadPosRankSum=0.928;SOR=0.824;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+693T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2764A>C||||||	GT:AD:DP:GQ:PL	0/1:21,9:30:99:237,0,530	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65650	.	C	T	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=0;MQRankSum=-2.216;QD=15.32;ReadPosRankSum=-0.201;SOR=0.489;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1017C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2440G>A||||||	GT:AD:DP:GQ:PL	0/1:10,17:28:99:442,0,246	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65650	.	C	T	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=0;MQRankSum=-2.216;QD=15.32;ReadPosRankSum=-0.201;SOR=0.489;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1017C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2440G>A||||||	GT:AD:DP:GQ:PL	0/1:10,17:28:99:442,0,246	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65688	.	CT	C	563.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DP=28;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=0;MQRankSum=-3.062;QD=21.68;RPA=2,1;RU=T;ReadPosRankSum=0.738;SOR=0.330;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1056delT||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2401delA||||||	GT:AD:DP:GQ:PL	0/1:10,16:28:99:601,0,346	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65688	.	CT	C	563.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DP=28;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=0;MQRankSum=-3.062;QD=21.68;RPA=2,1;RU=T;ReadPosRankSum=0.738;SOR=0.330;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1056delT||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2401delA||||||	GT:AD:DP:GQ:PL	0/1:10,16:28:99:601,0,346	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65768	.	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=52.61;MQ0=1;MQRankSum=3.479;QD=10.55;ReadPosRankSum=-1.201;SOR=1.124;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1135G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2322C>T||||||	GT:AD:DP:GQ:PL	0/1:20,18:38:99:429,0,515	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65768	.	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=52.61;MQ0=1;MQRankSum=3.479;QD=10.55;ReadPosRankSum=-1.201;SOR=1.124;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1135G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2322C>T||||||	GT:AD:DP:GQ:PL	0/1:20,18:38:99:429,0,515	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65799	.	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.696;HaplotypeScore=1.4942;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=1;MQRankSum=-3.075;QD=10.65;ReadPosRankSum=-1.211;SOR=0.617;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1166C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2291G>A||||||	GT:AD:DP:GQ:PL	0/1:23,18:41:99:465,0,575	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65799	.	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.696;HaplotypeScore=1.4942;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=1;MQRankSum=-3.075;QD=10.65;ReadPosRankSum=-1.211;SOR=0.617;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1166C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2291G>A||||||	GT:AD:DP:GQ:PL	0/1:23,18:41:99:465,0,575	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65833	.	T	C	1258.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.816;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=2;MQRankSum=2.084;QD=27.97;ReadPosRankSum=-1.210;SOR=0.307;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1200T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2257A>G||||||	GT:AD:DP:GQ:PL	1/1:3,42:45:93:1287,93,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65833	.	T	C	1258.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.816;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=2;MQRankSum=2.084;QD=27.97;ReadPosRankSum=-1.210;SOR=0.307;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1200T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2257A>G||||||	GT:AD:DP:GQ:PL	1/1:3,42:45:93:1287,93,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	65916	.	A	C	1240.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=1;QD=28.86;SOR=0.892;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4967A>C|||||4967|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1283A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2174T>G||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:90:1269,90,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	65916	.	A	C	1240.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=1;QD=28.86;SOR=0.892;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4967A>C|||||4967|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1283A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2174T>G||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:90:1269,90,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66088	.	G	A	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-5.273;QD=0.73;ReadPosRankSum=0.550;SOR=0.609;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4795G>A|||||4795|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1455G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2002C>T||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:56:56,0,867	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66088	.	G	A	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-5.273;QD=0.73;ReadPosRankSum=0.550;SOR=0.609;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4795G>A|||||4795|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1455G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+2002C>T||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:56:56,0,867	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66092	.	C	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-5.273;QD=0.73;ReadPosRankSum=0.876;SOR=0.609;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4791C>T|||||4791|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1459C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1998G>A||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:56:56,0,884	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66092	.	C	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-5.273;QD=0.73;ReadPosRankSum=0.876;SOR=0.609;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4791C>T|||||4791|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1459C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1998G>A||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:56:56,0,884	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66094	.	A	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.890;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-5.273;QD=0.81;ReadPosRankSum=1.254;SOR=0.609;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4789A>C|||||4789|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1461A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1996T>G||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:59:59,0,838	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66094	.	A	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.890;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-5.273;QD=0.81;ReadPosRankSum=1.254;SOR=0.609;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4789A>C|||||4789|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1461A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1996T>G||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:59:59,0,838	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66137	.	C	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9885;MLEAC=1;MLEAF=0.500;MQ=52.92;MQ0=0;MQRankSum=-5.436;QD=1.17;ReadPosRankSum=1.267;SOR=1.085;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4746C>A|||||4746|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1504C>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1953G>T||||||	GT:AD:DP:GQ:PL	0/1:24,10:34:68:68,0,715	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66137	.	C	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9885;MLEAC=1;MLEAF=0.500;MQ=52.92;MQ0=0;MQRankSum=-5.436;QD=1.17;ReadPosRankSum=1.267;SOR=1.085;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4746C>A|||||4746|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1504C>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1953G>T||||||	GT:AD:DP:GQ:PL	0/1:24,10:34:68:68,0,715	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66138	.	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9885;MLEAC=1;MLEAF=0.500;MQ=52.69;MQ0=0;MQRankSum=-4.795;QD=1.14;ReadPosRankSum=1.355;SOR=0.722;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4745G>T|||||4745|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1505G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1952C>A||||||	GT:AD:DP:GQ:PL	0/1:24,9:33:66:66,0,688	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66138	.	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9885;MLEAC=1;MLEAF=0.500;MQ=52.69;MQ0=0;MQRankSum=-4.795;QD=1.14;ReadPosRankSum=1.355;SOR=0.722;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4745G>T|||||4745|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1505G>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1952C>A||||||	GT:AD:DP:GQ:PL	0/1:24,9:33:66:66,0,688	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66145	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4101;MLEAC=1;MLEAF=0.500;MQ=51.90;MQ0=0;MQRankSum=-4.506;QD=1.43;ReadPosRankSum=0.407;SOR=0.616;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4738G>A|||||4738|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1512G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1945C>T||||||	GT:AD:DP:GQ:PL	0/1:21,9:30:71:71,0,665	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66145	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4101;MLEAC=1;MLEAF=0.500;MQ=51.90;MQ0=0;MQRankSum=-4.506;QD=1.43;ReadPosRankSum=0.407;SOR=0.616;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4738G>A|||||4738|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.273+1512G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1945C>T||||||	GT:AD:DP:GQ:PL	0/1:21,9:30:71:71,0,665	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66443	.	A	G	789.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=34.34;SOR=0.776;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4440A>G|||||4440|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-1242A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1647T>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:60:818,60,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66443	.	A	G	789.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=34.34;SOR=0.776;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4440A>G|||||4440|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-1242A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1647T>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:60:818,60,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66493	.	A	C	528.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=29.38;SOR=1.179;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4390A>C|||||4390|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-1192A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1597T>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:42:557,42,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66493	.	A	C	528.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=29.38;SOR=1.179;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4390A>C|||||4390|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-1192A>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1597T>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:42:557,42,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66589	.	T	C	641.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=30.95;SOR=0.804;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4294T>C|||||4294|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-1096T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1501A>G||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:48:670,48,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66589	.	T	C	641.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=30.95;SOR=0.804;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-4294T>C|||||4294|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-1096T>C||||||,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1501A>G||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:48:670,48,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	66905	.	T	G	898.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=2;QD=28.99;SOR=1.255;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3978T>G|||||3978|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-780T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1185A>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:927,69,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	66905	.	T	G	898.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=2;QD=28.99;SOR=1.255;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3978T>G|||||3978|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-780T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+1185A>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:69:927,69,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67098	.	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=35;Dels=0.00;ExcessHet=3.0103;FS=13.627;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=1;MQRankSum=-4.711;QD=2.02;ReadPosRankSum=-1.630;SOR=3.595;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3785C>T|||||3785|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-587C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+992G>A||||||	GT:AD:DP:GQ:PL	0/1:29,6:35:99:99,0,913	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67098	.	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=35;Dels=0.00;ExcessHet=3.0103;FS=13.627;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=1;MQRankSum=-4.711;QD=2.02;ReadPosRankSum=-1.630;SOR=3.595;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3785C>T|||||3785|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-587C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+992G>A||||||	GT:AD:DP:GQ:PL	0/1:29,6:35:99:99,0,913	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67136	.	A	G	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;DP=46;Dels=0.00;ExcessHet=3.0103;FS=19.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=3;MQRankSum=5.623;QD=23.30;ReadPosRankSum=-1.877;SOR=0.433;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3747A>G|||||3747|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-549A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+954T>C||||||	GT:AD:DP:GQ:PL	0/1:9,37:46:99:1100,0,152	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67136	.	A	G	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;DP=46;Dels=0.00;ExcessHet=3.0103;FS=19.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=3;MQRankSum=5.623;QD=23.30;ReadPosRankSum=-1.877;SOR=0.433;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3747A>G|||||3747|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-549A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+954T>C||||||	GT:AD:DP:GQ:PL	0/1:9,37:46:99:1100,0,152	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67142	.	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DP=46;Dels=0.00;ExcessHet=3.0103;FS=19.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=3;MQRankSum=-5.578;QD=2.69;ReadPosRankSum=2.288;SOR=4.169;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3741A>G|||||3741|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-543A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+948T>C||||||	GT:AD:DP:GQ:PL	0/1:37,9:46:99:152,0,1105	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67142	.	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DP=46;Dels=0.00;ExcessHet=3.0103;FS=19.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQ0=3;MQRankSum=-5.578;QD=2.69;ReadPosRankSum=2.288;SOR=4.169;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3741A>G|||||3741|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-543A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+948T>C||||||	GT:AD:DP:GQ:PL	0/1:37,9:46:99:152,0,1105	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67190	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=2;MQRankSum=-5.345;QD=4.22;ReadPosRankSum=-0.251;SOR=1.022;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3693C>T|||||3693|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-495C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+900G>A||||||	GT:AD:DP:GQ:PL	0/1:30,14:44:99:214,0,871	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67190	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=2;MQRankSum=-5.345;QD=4.22;ReadPosRankSum=-0.251;SOR=1.022;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3693C>T|||||3693|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-495C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+900G>A||||||	GT:AD:DP:GQ:PL	0/1:30,14:44:99:214,0,871	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67253	.	A	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.845;HaplotypeScore=3.6900;MLEAC=1;MLEAF=0.500;MQ=51.62;MQ0=3;MQRankSum=-5.451;QD=4.78;ReadPosRankSum=0.949;SOR=2.187;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3630A>T|||||3630|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-432A>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+837T>A||||||	GT:AD:DP:GQ:PL	0/1:29,13:42:99:229,0,774	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67253	.	A	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.845;HaplotypeScore=3.6900;MLEAC=1;MLEAF=0.500;MQ=51.62;MQ0=3;MQRankSum=-5.451;QD=4.78;ReadPosRankSum=0.949;SOR=2.187;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3630A>T|||||3630|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-432A>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+837T>A||||||	GT:AD:DP:GQ:PL	0/1:29,13:42:99:229,0,774	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67266	.	T	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=42;Dels=0.00;ExcessHet=3.0103;FS=12.802;HaplotypeScore=4.7365;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=3;MQRankSum=-6.074;QD=4.33;ReadPosRankSum=1.468;SOR=3.046;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3617T>G|||||3617|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-419T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+824A>C||||||	GT:AD:DP:GQ:PL	0/1:30,12:42:99:210,0,889	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67266	.	T	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=42;Dels=0.00;ExcessHet=3.0103;FS=12.802;HaplotypeScore=4.7365;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=3;MQRankSum=-6.074;QD=4.33;ReadPosRankSum=1.468;SOR=3.046;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3617T>G|||||3617|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-419T>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+824A>C||||||	GT:AD:DP:GQ:PL	0/1:30,12:42:99:210,0,889	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67316	.	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.100;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.30;MQ0=2;MQRankSum=-5.575;QD=3.14;ReadPosRankSum=-0.573;SOR=2.584;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3567C>T|||||3567|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-369C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+774G>A||||||	GT:AD:DP:GQ:PL	0/1:26,9:35:99:138,0,885	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67316	.	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.100;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.30;MQ0=2;MQRankSum=-5.575;QD=3.14;ReadPosRankSum=-0.573;SOR=2.584;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3567C>T|||||3567|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-369C>T||||||,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+774G>A||||||	GT:AD:DP:GQ:PL	0/1:26,9:35:99:138,0,885	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67435	.	G	A	757.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SOR=0.859;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3448G>A|||||3448|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-250G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+655C>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:57:786,57,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67435	.	G	A	757.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SOR=0.859;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3448G>A|||||3448|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-250G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+655C>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:57:786,57,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67455	.	C	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.628;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=1.121;QD=13.99;ReadPosRankSum=-0.245;SOR=1.034;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3428C>A|||||3428|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-230C>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+635G>T||||||	GT:AD:DP:GQ:PL	0/1:12,13:25:99:378,0,373	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67455	.	C	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.628;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=1.121;QD=13.99;ReadPosRankSum=-0.245;SOR=1.034;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3428C>A|||||3428|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-230C>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+635G>T||||||	GT:AD:DP:GQ:PL	0/1:12,13:25:99:378,0,373	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67476	.	A	G	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-1.003;QD=12.46;ReadPosRankSum=-0.092;SOR=1.112;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3407A>G|||||3407|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-209A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+614T>C||||||	GT:AD:DP:GQ:PL	0/1:15,13:28:99:377,0,395	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67476	.	A	G	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-1.003;QD=12.46;ReadPosRankSum=-0.092;SOR=1.112;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3407A>G|||||3407|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|2/3|c.274-209A>G||||||,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+614T>C||||||	GT:AD:DP:GQ:PL	0/1:15,13:28:99:377,0,395	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67690	.	A	T	648.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.174;HaplotypeScore=5.5352;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=1.044;QD=23.17;ReadPosRankSum=1.735;SOR=0.568;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|3/4|c.279A>T|p.Gln93His|279/405|279/405|93/134||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3193A>T|||||3193|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+400T>A||||||	GT:AD:DP:GQ:PL	1/1:1,27:28:18:677,18,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67690	.	A	T	648.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.174;HaplotypeScore=5.5352;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=1.044;QD=23.17;ReadPosRankSum=1.735;SOR=0.568;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|3/4|c.279A>T|p.Gln93His|279/405|279/405|93/134||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3193A>T|||||3193|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+400T>A||||||	GT:AD:DP:GQ:PL	1/1:1,27:28:18:677,18,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67692	.	T	G	620.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.226;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=4.6193;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=0.982;QD=23.88;ReadPosRankSum=1.736;SOR=0.595;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|3/4|c.281T>G|p.Phe94Cys|281/405|281/405|94/134||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3191T>G|||||3191|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+398A>C||||||	GT:AD:DP:GQ:PL	1/1:1,25:28:14:649,14,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67692	.	T	G	620.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.226;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=4.6193;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=0.982;QD=23.88;ReadPosRankSum=1.736;SOR=0.595;ANN=G|missense_variant|MODERATE|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|3/4|c.281T>G|p.Phe94Cys|281/405|281/405|94/134||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3191T>G|||||3191|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+398A>C||||||	GT:AD:DP:GQ:PL	1/1:1,25:28:14:649,14,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67796	.	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.72;MQ0=0;MQRankSum=1.016;QD=10.18;ReadPosRankSum=0.776;SOR=0.293;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3087G>A|||||3087|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|3/3|c.287-50G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+294C>T||||||	GT:AD:DP:GQ:PL	0/1:10,11:21:99:242,0,257	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67796	.	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.72;MQ0=0;MQRankSum=1.016;QD=10.18;ReadPosRankSum=0.776;SOR=0.293;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3087G>A|||||3087|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|3/3|c.287-50G>A||||||,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+294C>T||||||	GT:AD:DP:GQ:PL	0/1:10,11:21:99:242,0,257	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67846	.	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.984;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.396;QD=7.41;ReadPosRankSum=-0.339;SOR=1.609;ANN=A|missense_variant&splice_region_variant|MODERATE|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|4/4|c.287G>A|p.Gly96Asp|287/405|287/405|96/134||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3037G>A|||||3037|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+244C>T||||||	GT:AD:DP:GQ:PL	0/1:12,7:19:99:169,0,301	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67846	.	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.984;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.396;QD=7.41;ReadPosRankSum=-0.339;SOR=1.609;ANN=A|missense_variant&splice_region_variant|MODERATE|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|4/4|c.287G>A|p.Gly96Asp|287/405|287/405|96/134||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-3037G>A|||||3037|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+244C>T||||||	GT:AD:DP:GQ:PL	0/1:12,7:19:99:169,0,301	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	67925	.	A	G	230.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SOR=1.402;ANN=G|synonymous_variant|LOW|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|4/4|c.366A>G|p.Arg122Arg|366/405|366/405|122/134||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-2958A>G|||||2958|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+165T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:259,18,0	scaffold36387_cov62	GLEAN	mRNA	59630	67964	0.77	+	.	ID=Soaet10008592
scaffold36387_cov62	67925	.	A	G	230.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SOR=1.402;ANN=G|synonymous_variant|LOW|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding|4/4|c.366A>G|p.Arg122Arg|366/405|366/405|122/134||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-2958A>G|||||2958|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+165T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:259,18,0	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	68042	.	C	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.09;ReadPosRankSum=1.383;SOR=0.368;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding||c.-2841C>T|||||2841|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.*78C>T|||||78|,T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding|1/2|c.96+48G>A||||||	GT:AD:DP:GQ:PL	0/1:2,7:9:58:227,0,58	scaffold36387_cov62	GLEAN	mRNA	60642	68185	0.45	-	.	ID=Soaet10008593
scaffold36387_cov62	71217	.	A	AT	857.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=31.41;RPA=2,3;RU=T;SOR=1.085;STR;ANN=AT|splice_region_variant&intron_variant|LOW|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding|1/1|c.330+5_330+6insT||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,AT|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.-3033_-3032insA|||||3033|,AT|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.*3253_*3254insT|||||3254|	GT:AD:DP:GQ:PL	1/1:0,22:22:66:895,66,0	scaffold36387_cov62	GLEAN	mRNA	70883	71471	0.99	+	.	ID=Soaet10008597
scaffold36387_cov62	71227	.	A	G	683.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=29.73;SOR=0.963;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.-3042T>C|||||3042|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.*3263A>G|||||3263|,G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding|1/1|c.330+15A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:51:712,51,0	scaffold36387_cov62	GLEAN	mRNA	70883	71471	0.99	+	.	ID=Soaet10008597
scaffold36387_cov62	71285	.	T	C	686.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=26.41;SOR=0.846;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.-3100A>G|||||3100|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.*3321T>C|||||3321|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding|1/1|c.331-37T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:51:715,51,0	scaffold36387_cov62	GLEAN	mRNA	70883	71471	0.99	+	.	ID=Soaet10008597
scaffold36387_cov62	71312	.	CT	C	672.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.03;RPA=8,7;RU=T;SOR=0.990;STR;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.-3128delA|||||3128|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.*3349delT|||||3349|,C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding|1/1|c.331-9delT||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:23:63:710,63,0	scaffold36387_cov62	GLEAN	mRNA	70883	71471	0.99	+	.	ID=Soaet10008597
scaffold36387_cov62	71466	.	A	T	214.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SOR=1.402;ANN=T|missense_variant|MODERATE|EXON_scaffold36387_cov62_70883_71212|GENE_EXON_scaffold36387_cov62_70883_71212|transcript|Soaet10008597|protein_coding|2/2|c.475A>T|p.Ile159Phe|475/480|475/480|159/159||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_60642_60797|GENE_EXON_scaffold36387_cov62_60642_60797|transcript|Soaet10008593|protein_coding||c.-3281T>A|||||3281|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36387_cov62_59630_59782|GENE_EXON_scaffold36387_cov62_59630_59782|transcript|Soaet10008592|protein_coding||c.*3502A>T|||||3502|	GT:AD:DP:GQ:PL	1/1:0,9:9:18:243,18,0	scaffold36387_cov62	GLEAN	mRNA	70883	71471	0.99	+	.	ID=Soaet10008597
scaffold36387_cov62	112181	.	TA	T	153.8	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.63;RPA=10,9;RU=A;SOR=1.329;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|9/9|c.759-542delT||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:18:191,18,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	112531	.	T	C	612.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.64;SOR=1.402;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|9/9|c.758+208A>G||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:641,45,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	112629	.	A	AT	221.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.64;RPA=9,10;RU=T;SOR=0.892;STR;ANN=AT|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|9/9|c.758+109_758+110insA||||||	GT:AD:DP:GQ:PL	1/1:0,9:11:27:259,27,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	112714	.	A	C	378.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=29.14;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|9/9|c.758+25T>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:30:407,30,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	113376	.	A	G	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.30;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|8/9|c.676-555T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	114016	.	T	C	104.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|8/9|c.675+297A>G||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:9:132,9,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	115546	.	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.23;MQ0=0;MQRankSum=-2.369;QD=4.72;ReadPosRankSum=-1.029;SOR=1.034;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.573-448A>G||||||	GT:AD:DP:GQ:PL	0/1:5,3:8:66:66,0,180	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	115557	.	A	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.57;MQ0=0;MQRankSum=-2.253;QD=3.34;ReadPosRankSum=-0.542;SOR=0.495;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.573-459T>A||||||	GT:AD:DP:GQ:PL	0/1:7,4:11:65:65,0,219	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	115579	.	C	T	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-3.118;QD=1.55;ReadPosRankSum=1.275;SOR=0.446;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.573-481G>A||||||	GT:AD:DP:GQ:PL	0/1:12,4:16:53:53,0,391	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	115607	.	A	G	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=-3.467;QD=1.30;ReadPosRankSum=1.552;SOR=0.582;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.573-509T>C||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:53:53,0,379	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	115609	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=-3.467;QD=1.30;ReadPosRankSum=1.651;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.573-511C>T||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:53:53,0,392	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	115631	.	T	C	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-3.043;QD=1.52;ReadPosRankSum=0.821;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.573-533A>G||||||	GT:AD:DP:GQ:PL	0/1:14,3:17:54:54,0,360	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	115919	.	A	C	138.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.572+383T>G||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:12:166,12,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	116152	.	A	G	426.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.48;SOR=1.765;ANN=G|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|6/9|c.572+150T>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:455,33,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	116870	.	A	T	795.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=34.60;SOR=0.776;ANN=T|intron_variant|MODIFIER|EXON_scaffold36387_cov62_111562_111640|GENE_EXON_scaffold36387_cov62_111562_111640|transcript|Soaet10008598|protein_coding|3/9|c.290+35T>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:24:60:824,60,0	scaffold36387_cov62	GLEAN	mRNA	111562	117898	0.85	-	.	ID=Soaet10008598
scaffold36387_cov62	181729	.	G	A	904.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=1;QD=31.20;SOR=0.997;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_181627_181761|GENE_EXON_scaffold36387_cov62_181627_181761|transcript|Soaet10008601|protein_coding|1/2|c.103G>A|p.Val35Met|103/363|103/363|35/120||	GT:AD:DP:GQ:PL	1/1:0,29:31:66:933,66,0	scaffold36387_cov62	GLEAN	mRNA	181627	182061	0.43	+	.	ID=Soaet10008601
scaffold36387_cov62	181918	.	T	C	555.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.69;SOR=2.179;ANN=C|missense_variant|MODERATE|EXON_scaffold36387_cov62_181627_181761|GENE_EXON_scaffold36387_cov62_181627_181761|transcript|Soaet10008601|protein_coding|2/2|c.220T>C|p.Cys74Arg|220/363|220/363|74/120||	GT:AD:DP:GQ:PL	1/1:0,17:17:42:584,42,0	scaffold36387_cov62	GLEAN	mRNA	181627	182061	0.43	+	.	ID=Soaet10008601
scaffold36387_cov62	181993	.	G	A	586.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SOR=0.776;ANN=A|missense_variant|MODERATE|EXON_scaffold36387_cov62_181627_181761|GENE_EXON_scaffold36387_cov62_181627_181761|transcript|Soaet10008601|protein_coding|2/2|c.295G>A|p.Gly99Ser|295/363|295/363|99/120||	GT:AD:DP:GQ:PL	1/1:0,23:23:45:615,45,0	scaffold36387_cov62	GLEAN	mRNA	181627	182061	0.43	+	.	ID=Soaet10008601
scaffold36387_cov62	182061	.	G	A	729.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=1;QD=28.07;SOR=1.136;ANN=A|splice_region_variant&stop_retained_variant|LOW|EXON_scaffold36387_cov62_181627_181761|GENE_EXON_scaffold36387_cov62_181627_181761|transcript|Soaet10008601|protein_coding|2/2|c.363G>A|p.Ter121Ter|363/363|363/363|121/120||	GT:AD:DP:GQ:PL	1/1:0,26:26:54:758,54,0	scaffold36387_cov62	GLEAN	mRNA	181627	182061	0.43	+	.	ID=Soaet10008601
scaffold36734_cov61	2124	.	C	T	2113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;DP=93;Dels=0.00;ExcessHet=3.0103;FS=6.152;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=-2.848;QD=22.73;ReadPosRankSum=-0.661;SOR=1.165;ANN=T|splice_region_variant&stop_retained_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|21/21|c.2303G>A|p.Ter768Ter|2303/2304|2303/2304|768/767||	GT:AD:DP:GQ:PL	0/1:14,79:93:99:2142,0,301	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2146	.	A	G	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DP=92;Dels=0.00;ExcessHet=3.0103;FS=14.639;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=55.30;MQ0=0;MQRankSum=-3.839;QD=20.36;ReadPosRankSum=-0.204;SOR=1.504;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|21/21|c.2281T>C|p.Cys761Arg|2281/2304|2281/2304|761/767||	GT:AD:DP:GQ:PL	0/1:27,64:92:99:1881,0,669	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2152	.	C	T	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DP=95;Dels=0.00;ExcessHet=3.0103;FS=14.050;HaplotypeScore=4.7308;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=-3.890;QD=18.87;ReadPosRankSum=0.163;SOR=1.376;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|21/21|c.2275G>A|p.Asp759Asn|2275/2304|2275/2304|759/767||	GT:AD:DP:GQ:PL	0/1:28,67:95:99:1821,0,684	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2165	.	A	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=88;Dels=0.00;ExcessHet=3.0103;FS=6.070;HaplotypeScore=2.9074;MLEAC=1;MLEAF=0.500;MQ=55.22;MQ0=0;MQRankSum=2.596;QD=2.97;ReadPosRankSum=-1.084;SOR=0.732;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|21/21|c.2262T>C|p.Arg754Arg|2262/2304|2262/2304|754/767||	GT:AD:DP:GQ:PL	0/1:74,14:88:99:290,0,2141	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2166	.	C	G	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.630;HaplotypeScore=2.9074;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=0;MQRankSum=-2.632;QD=24.50;ReadPosRankSum=1.290;SOR=0.905;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|21/21|c.2261G>C|p.Arg754Pro|2261/2304|2261/2304|754/767||	GT:AD:DP:GQ:PL	0/1:14,69:84:99:2062,0,288	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2168	.	A	C	2102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.113;HaplotypeScore=3.8232;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=-2.628;QD=24.45;ReadPosRankSum=1.153;SOR=0.845;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|21/21|c.2259T>G|p.Phe753Leu|2259/2304|2259/2304|753/767||	GT:AD:DP:GQ:PL	0/1:14,72:86:99:2131,0,288	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2284	.	G	A	2435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.911;HaplotypeScore=10.6846;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=1;MQRankSum=0.000;QD=23.20;ReadPosRankSum=1.250;SOR=0.597;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|21/21|c.2143C>T|p.Arg715Cys|2143/2304|2143/2304|715/767||	GT:AD:DP:GQ:PL	0/1:22,83:105:99:2464,0,404	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2301	.	C	T	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;DP=101;Dels=0.01;ExcessHet=3.0103;FS=2.629;HaplotypeScore=37.2319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-1.740;SOR=0.990;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|20/20|c.2132-6G>A||||||	GT:AD:DP:GQ:PL	0/1:54,44:100:99:1176,0,1578	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2516	.	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DP=99;Dels=0.00;ExcessHet=3.0103;FS=10.859;HaplotypeScore=22.4923;MLEAC=1;MLEAF=0.500;MQ=50.09;MQ0=0;MQRankSum=-1.693;QD=1.26;ReadPosRankSum=0.204;SOR=1.277;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|19/20|c.2099+26T>C||||||	GT:AD:DP:GQ:PL	0/1:87,12:99:99:153,0,2371	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2520	.	G	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=97;Dels=0.00;ExcessHet=3.0103;FS=5.113;HaplotypeScore=34.4054;MLEAC=1;MLEAF=0.500;MQ=49.34;MQ0=0;MQRankSum=-0.909;QD=9.99;ReadPosRankSum=0.480;SOR=0.353;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|19/20|c.2099+22C>G||||||	GT:AD:DP:GQ:PL	0/1:50,47:97:99:997,0,1486	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2525	.	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;DP=97;Dels=0.00;ExcessHet=3.0103;FS=10.959;HaplotypeScore=36.3969;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=2.209;QD=1.35;ReadPosRankSum=0.659;SOR=2.553;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|19/20|c.2099+17A>G||||||	GT:AD:DP:GQ:PL	0/1:88,9:97:99:159,0,2319	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2527	.	T	G	2172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.208;HaplotypeScore=24.7348;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=0;MQRankSum=-2.258;QD=22.40;ReadPosRankSum=0.899;SOR=0.482;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|19/20|c.2099+15A>C||||||	GT:AD:DP:GQ:PL	0/1:12,85:97:99:2201,0,245	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2610	.	G	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;DP=59;Dels=0.00;ExcessHet=3.0103;FS=4.452;HaplotypeScore=2.7472;MLEAC=1;MLEAF=0.500;MQ=44.42;MQ0=0;MQRankSum=2.833;QD=6.05;ReadPosRankSum=0.563;SOR=1.043;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|19/21|c.2031C>A|p.His677Gln|2031/2304|2031/2304|677/767||	GT:AD:DP:GQ:PL	0/1:43,16:59:99:385,0,961	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2628	.	G	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;DP=59;Dels=0.00;ExcessHet=3.0103;FS=6.357;HaplotypeScore=4.3282;MLEAC=1;MLEAF=0.500;MQ=45.25;MQ0=0;MQRankSum=-6.584;QD=10.06;ReadPosRankSum=-0.948;SOR=1.373;ANN=C|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|19/21|c.2013C>G|p.Thr671Thr|2013/2304|2013/2304|671/767||	GT:AD:DP:GQ:PL	0/1:29,30:59:99:622,0,675	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2642	.	T	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.168;HaplotypeScore=8.7820;MLEAC=1;MLEAF=0.500;MQ=47.06;MQ0=0;MQRankSum=3.109;QD=5.09;ReadPosRankSum=2.281;SOR=0.919;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|18/20|c.2005-6A>C||||||	GT:AD:DP:GQ:PL	0/1:41,14:55:99:308,0,942	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2658	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.0310;MLEAC=1;MLEAF=0.500;MQ=47.98;MQ0=0;MQRankSum=-1.248;QD=0.64;ReadPosRankSum=-0.582;SOR=0.877;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|18/20|c.2005-22C>T||||||	GT:AD:DP:GQ:PL	0/1:49,5:55:63:63,0,1340	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2683	.	G	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.379;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=49.81;MQ0=0;MQRankSum=-5.925;QD=13.27;ReadPosRankSum=-1.022;SOR=1.149;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|18/20|c.2004+43C>T||||||	GT:AD:DP:GQ:PL	0/1:28,26:55:99:745,0,717	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2704	.	C	G	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=64;Dels=0.00;ExcessHet=3.0103;FS=7.119;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=51.78;MQ0=0;MQRankSum=-4.689;QD=15.75;ReadPosRankSum=-1.829;SOR=1.348;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|18/20|c.2004+22G>C||||||	GT:AD:DP:GQ:PL	0/1:27,37:64:99:1036,0,653	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2770	.	G	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.760;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=1.430;QD=5.50;ReadPosRankSum=-1.891;SOR=1.122;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|18/21|c.1960C>T|p.Pro654Ser|1960/2304|1960/2304|654/767||	GT:AD:DP:GQ:PL	0/1:59,18:77:99:452,0,1703	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2807	.	G	A	2443.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.840;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.630;QD=29.80;ReadPosRankSum=0.482;SOR=0.620;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/20|c.1931-8C>T||||||	GT:AD:DP:GQ:PL	1/1:3,79:82:69:2472,69,0	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2877	.	T	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;DP=97;Dels=0.00;ExcessHet=3.0103;FS=3.889;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=0.478;QD=3.13;ReadPosRankSum=-1.810;SOR=0.735;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/20|c.1930+17A>T||||||	GT:AD:DP:GQ:PL	0/1:79,16:97:99:326,0,2396	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2884	.	A	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DP=100;Dels=0.00;ExcessHet=3.0103;FS=7.097;HaplotypeScore=8.3186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-1.719;SOR=1.034;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/20|c.1930+10T>A||||||	GT:AD:DP:GQ:PL	0/1:82,18:100:99:361,0,2497	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2910	.	C	T	2158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;DP=108;Dels=0.00;ExcessHet=3.0103;FS=7.037;HaplotypeScore=11.7277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.18;ReadPosRankSum=-1.589;SOR=1.156;ANN=T|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/21|c.1914G>A|p.Pro638Pro|1914/2304|1914/2304|638/767||	GT:AD:DP:GQ:PL	0/1:30,77:108:99:2187,0,750	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2955	.	C	A	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DP=119;Dels=0.00;ExcessHet=3.0103;FS=3.775;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.604;QD=20.35;ReadPosRankSum=0.579;SOR=0.737;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/21|c.1869G>T|p.Val623Val|1869/2304|1869/2304|623/767||	GT:AD:DP:GQ:PL	0/1:33,85:119:99:2429,0,748	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2978	.	A	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=120;Dels=0.00;ExcessHet=3.0103;FS=8.339;HaplotypeScore=16.7453;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=0.377;QD=1.64;ReadPosRankSum=0.290;SOR=1.545;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/21|c.1846T>A|p.Cys616Ser|1846/2304|1846/2304|616/767||	GT:AD:DP:GQ:PL	0/1:106,13:120:99:223,0,3125	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2979	.	A	C	2949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.7453;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-0.375;QD=25.43;ReadPosRankSum=2.299;SOR=0.775;ANN=C|stop_gained|HIGH|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/21|c.1845T>G|p.Tyr615*|1845/2304|1845/2304|615/767||;LOF=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00);NMD=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00)	GT:AD:DP:GQ:PL	0/1:16,100:116:99:2978,0,206	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	2980	.	T	C	2965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.7453;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-0.375;QD=25.57;ReadPosRankSum=2.338;SOR=0.775;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|17/21|c.1844A>G|p.Tyr615Cys|1844/2304|1844/2304|615/767||	GT:AD:DP:GQ:PL	0/1:16,100:116:99:2994,0,209	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3020	.	C	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=28.7428;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-1.405;QD=7.89;ReadPosRankSum=-0.291;SOR=0.665;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/20|c.1819-15G>A||||||	GT:AD:DP:GQ:PL	0/1:77,38:115:99:936,0,2051	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3021	.	G	T	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.8269;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=0.311;QD=0.17;ReadPosRankSum=-0.017;SOR=0.824;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/20|c.1819-16C>A||||||	GT:AD:DP:GQ:PL	0/1:105,8:113:47:47,0,2928	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3023	.	A	G	2937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;DP=115;Dels=0.00;ExcessHet=3.0103;FS=1.349;HaplotypeScore=27.8269;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-0.259;QD=25.55;ReadPosRankSum=-0.974;SOR=0.438;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/20|c.1819-18T>C||||||	GT:AD:DP:GQ:PL	0/1:9,106:115:39:2966,0,39	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3028	.	A	G	2859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;DP=113;Dels=0.00;ExcessHet=3.0103;FS=1.328;HaplotypeScore=27.8269;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-0.261;QD=25.31;ReadPosRankSum=-1.045;SOR=0.470;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/20|c.1819-23T>C||||||	GT:AD:DP:GQ:PL	0/1:9,104:113:55:2888,0,55	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3044	.	T	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DP=112;Dels=0.00;ExcessHet=3.0103;FS=4.926;HaplotypeScore=16.4092;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.022;QD=0.94;ReadPosRankSum=-1.204;SOR=0.899;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/20|c.1819-39A>G||||||	GT:AD:DP:GQ:PL	0/1:102,10:112:99:134,0,2769	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3053	.	T	C	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.6607;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=0.018;QD=4.17;ReadPosRankSum=-0.197;SOR=0.606;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/20|c.1818+36A>G||||||	GT:AD:DP:GQ:PL	0/1:78,21:99:99:441,0,2300	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3060	.	G	A	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.8307;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=0.027;QD=27.16;ReadPosRankSum=-0.210;SOR=0.712;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/20|c.1818+29C>T||||||	GT:AD:DP:GQ:PL	0/1:8,89:97:69:2663,0,69	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3119	.	A	G	1909.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-0.317;QD=28.08;ReadPosRankSum=-0.261;SOR=1.022;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|16/21|c.1788T>C|p.Val596Val|1788/2304|1788/2304|596/767||	GT:AD:DP:GQ:PL	0/1:4,64:68:1:1935,0,1	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3158	.	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;DP=49;Dels=0.00;ExcessHet=3.0103;FS=19.951;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=1.162;QD=5.77;ReadPosRankSum=0.336;SOR=0.741;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1755-6G>A||||||	GT:AD:DP:GQ:PL	0/1:34,15:49:99:311,0,1038	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3169	.	A	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;DP=44;Dels=0.00;ExcessHet=3.0103;FS=28.615;HaplotypeScore=20.3177;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-1.634;QD=14.20;ReadPosRankSum=0.858;SOR=3.331;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1755-17T>C||||||	GT:AD:DP:GQ:PL	0/1:21,23:44:99:653,0,553	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3179	.	T	TAGCA	920.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DP=41;ExcessHet=3.0103;FS=22.566;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-1.513;QD=18.66;ReadPosRankSum=0.884;SOR=3.365;ANN=TAGCA|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1755-28_1755-27insTGCT||||||	GT:AD:DP:GQ:PL	0/1:20,17:40:99:958,0,1197	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3180	.	A	G	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;DP=40;Dels=0.00;ExcessHet=3.0103;FS=19.517;HaplotypeScore=24.4014;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=0;MQRankSum=1.946;QD=10.64;ReadPosRankSum=-1.382;SOR=1.420;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1755-28T>C||||||	GT:AD:DP:GQ:PL	0/1:24,16:40:99:454,0,687	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3181	.	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=36;Dels=0.00;ExcessHet=3.0103;FS=28.198;HaplotypeScore=7.8311;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=-2.620;QD=12.19;ReadPosRankSum=2.023;SOR=4.166;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1755-29G>A||||||	GT:AD:DP:GQ:PL	0/1:20,16:36:99:467,0,602	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3189	.	T	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;DP=37;Dels=0.00;ExcessHet=3.0103;FS=32.099;HaplotypeScore=5.9994;MLEAC=1;MLEAF=0.500;MQ=56.87;MQ0=0;MQRankSum=-2.682;QD=12.02;ReadPosRankSum=1.273;SOR=4.165;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1755-37A>G||||||	GT:AD:DP:GQ:PL	0/1:21,16:37:99:473,0,600	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3205	.	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DP=33;Dels=0.00;ExcessHet=3.0103;FS=24.405;HaplotypeScore=3.6648;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=-2.744;QD=10.90;ReadPosRankSum=-1.440;SOR=3.903;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1754+52G>A||||||	GT:AD:DP:GQ:PL	0/1:19,14:33:99:388,0,617	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3219	.	A	C	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;DP=28;Dels=0.00;ExcessHet=3.0103;FS=16.577;HaplotypeScore=6.3244;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=0;MQRankSum=2.120;QD=11.60;ReadPosRankSum=1.093;SOR=1.200;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1754+38T>G||||||	GT:AD:DP:GQ:PL	0/1:16,12:28:99:353,0,483	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3220	.	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214;DP=27;Dels=0.00;ExcessHet=3.0103;FS=16.577;HaplotypeScore=6.3244;MLEAC=1;MLEAF=0.500;MQ=55.67;MQ0=0;MQRankSum=2.196;QD=10.14;ReadPosRankSum=0.806;SOR=1.204;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1754+37T>C||||||	GT:AD:DP:GQ:PL	0/1:15,12:27:99:302,0,457	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3227	.	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;DP=29;Dels=0.00;ExcessHet=3.0103;FS=9.748;HaplotypeScore=4.6594;MLEAC=1;MLEAF=0.500;MQ=55.97;MQ0=0;MQRankSum=-2.850;QD=1.75;ReadPosRankSum=-0.202;SOR=3.611;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1754+30T>C||||||	GT:AD:DP:GQ:PL	0/1:24,5:29:79:79,0,757	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3242	.	A	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DP=27;Dels=0.00;ExcessHet=3.0103;FS=10.193;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-3.960;QD=1.58;ReadPosRankSum=-1.812;SOR=3.603;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1754+15T>A||||||	GT:AD:DP:GQ:PL	0/1:22,5:27:71:71,0,669	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3243	.	C	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DP=26;Dels=0.00;ExcessHet=3.0103;FS=6.628;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=-4.493;QD=0.39;ReadPosRankSum=-1.601;SOR=3.247;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/20|c.1754+14G>A||||||	GT:AD:DP:GQ:PL	0/1:22,4:26:38:38,0,672	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3311	.	A	C	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.489;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=0;MQRankSum=-2.940;QD=16.83;ReadPosRankSum=1.466;SOR=0.368;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|15/21|c.1700T>G|p.Met567Arg|1700/2304|1700/2304|567/767||	GT:AD:DP:GQ:PL	0/1:10,26:36:99:634,0,220	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3379	.	T	C	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=-3.542;QD=20.28;ReadPosRankSum=-1.369;SOR=0.824;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|14/20|c.1688+28A>G||||||	GT:AD:DP:GQ:PL	0/1:10,29:39:99:819,0,214	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3383	.	A	C	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3335;MLEAC=1;MLEAF=0.500;MQ=50.45;MQ0=0;MQRankSum=-3.636;QD=19.21;ReadPosRankSum=-1.398;SOR=0.792;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|14/20|c.1688+24T>G||||||	GT:AD:DP:GQ:PL	0/1:10,31:41:99:816,0,211	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3426	.	T	C	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=49.25;MQ0=0;MQRankSum=-4.065;QD=18.76;ReadPosRankSum=1.761;SOR=0.623;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|14/21|c.1669A>G|p.Lys557Glu|1669/2304|1669/2304|557/767||	GT:AD:DP:GQ:PL	0/1:11,31:42:99:816,0,247	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3468	.	A	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=47.55;MQ0=0;MQRankSum=-3.550;QD=17.52;ReadPosRankSum=1.073;SOR=0.588;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|14/21|c.1627T>C|p.Leu543Leu|1627/2304|1627/2304|543/767||	GT:AD:DP:GQ:PL	0/1:7,25:32:99:589,0,163	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3559	.	C	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.629;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=49.42;MQ0=0;MQRankSum=-4.331;QD=11.99;ReadPosRankSum=-0.269;SOR=1.803;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|13/20|c.1558-22G>T||||||	GT:AD:DP:GQ:PL	0/1:12,15:28:99:352,0,351	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3622	.	A	AC	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;DP=27;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=50.53;MQ0=0;MQRankSum=-2.137;QD=10.70;RPA=2,3;RU=C;ReadPosRankSum=-0.149;SOR=1.268;STR;ANN=AC|splice_donor_variant&intron_variant|HIGH|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|13/20|c.1557+1_1557+2insG||||||;LOF=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00)	GT:AD:DP:GQ:PL	0/1:15,9:24:99:294,0,538	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3730	.	T	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.331;HaplotypeScore=8.5578;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=-0.459;QD=10.80;ReadPosRankSum=-0.738;SOR=0.619;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|13/21|c.1451A>T|p.Glu484Val|1451/2304|1451/2304|484/767||	GT:AD:DP:GQ:PL	0/1:21,15:36:99:417,0,613	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3732	.	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.366;HaplotypeScore=6.5685;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=-0.616;QD=9.49;ReadPosRankSum=-0.906;SOR=0.654;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|13/21|c.1449G>A|p.Met483Ile|1449/2304|1449/2304|483/767||	GT:AD:DP:GQ:PL	0/1:23,13:36:99:370,0,602	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3755	.	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9676;MLEAC=1;MLEAF=0.500;MQ=55.16;MQ0=0;MQRankSum=0.772;QD=10.72;ReadPosRankSum=-0.816;SOR=0.829;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|13/21|c.1426G>A|p.Gly476Ser|1426/2304|1426/2304|476/767||	GT:AD:DP:GQ:PL	0/1:23,20:43:99:489,0,618	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3783	.	G	A	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=14.4552;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=0.189;QD=12.20;ReadPosRankSum=0.197;SOR=0.333;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|12/20|c.1420-22C>T||||||	GT:AD:DP:GQ:PL	0/1:20,19:39:99:504,0,587	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3793	.	T	C	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=13.4473;MLEAC=1;MLEAF=0.500;MQ=56.12;MQ0=0;MQRankSum=-4.784;QD=0.64;ReadPosRankSum=-0.915;SOR=2.200;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|12/20|c.1420-32A>G||||||	GT:AD:DP:GQ:PL	0/1:33,6:39:53:53,0,966	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3796	.	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=9.5448;MLEAC=1;MLEAF=0.500;MQ=55.93;MQ0=0;MQRankSum=1.069;QD=11.80;ReadPosRankSum=0.943;SOR=0.446;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|12/20|c.1420-35T>C||||||	GT:AD:DP:GQ:PL	0/1:19,18:37:99:465,0,518	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3806	.	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=55.48;MQ0=0;MQRankSum=1.941;QD=13.33;ReadPosRankSum=0.991;SOR=0.804;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|12/20|c.1419+32C>T||||||	GT:AD:DP:GQ:PL	0/1:16,17:33:99:468,0,406	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3836	.	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=2.243;QD=11.64;ReadPosRankSum=0.017;SOR=0.233;ANN=A|splice_donor_variant&intron_variant|HIGH|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|12/20|c.1419+2C>T||||||;LOF=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:424,0,439	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3862	.	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.051;HaplotypeScore=3.8210;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=-5.175;QD=1.24;ReadPosRankSum=2.368;SOR=1.802;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|12/21|c.1395C>T|p.Asn465Asn|1395/2304|1395/2304|465/767||	GT:AD:DP:GQ:PL	0/1:26,6:32:68:68,0,790	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3957	.	A	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=0;MQRankSum=-1.746;QD=7.45;ReadPosRankSum=0.950;SOR=0.892;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/20|c.1307-7T>A||||||	GT:AD:DP:GQ:PL	0/1:16,8:24:99:207,0,469	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	3990	.	G	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=-2.679;QD=7.82;ReadPosRankSum=-1.043;SOR=0.832;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/20|c.1307-40C>A||||||	GT:AD:DP:GQ:PL	0/1:11,7:18:99:169,0,289	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4006	.	A	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5791;MLEAC=1;MLEAF=0.500;MQ=56.75;MQ0=0;MQRankSum=-1.977;QD=1.74;ReadPosRankSum=0.808;SOR=1.104;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/20|c.1307-56T>A||||||	GT:AD:DP:GQ:PL	0/1:13,3:16:56:56,0,311	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4010	.	A	T	394.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.734;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.460;QD=26.32;ReadPosRankSum=0.766;SOR=0.349;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/20|c.1307-60T>A||||||	GT:AD:DP:GQ:PL	1/1:2,13:15:30:423,30,0	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4012	.	A	T	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=56.27;MQ0=0;MQRankSum=-3.474;QD=1.91;ReadPosRankSum=2.187;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/20|c.1307-62T>A||||||	GT:AD:DP:GQ:PL	0/1:11,3:14:55:55,0,274	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4022	.	T	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=-3.577;QD=7.25;ReadPosRankSum=0.307;SOR=0.646;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/20|c.1306+58A>T||||||	GT:AD:DP:GQ:PL	0/1:10,5:15:99:137,0,259	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4034	.	A	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=-3.004;QD=15.03;ReadPosRankSum=-1.133;SOR=1.093;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/20|c.1306+46T>A||||||	GT:AD:DP:GQ:PL	0/1:11,13:24:99:389,0,311	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4115	.	A	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.51;MQ0=0;MQRankSum=-1.089;QD=6.61;ReadPosRankSum=-0.203;SOR=0.760;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1271T>A|p.Ile424Asn|1271/2304|1271/2304|424/767||	GT:AD:DP:GQ:PL	0/1:23,11:34:99:253,0,700	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4138	.	G	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=55.97;MQ0=0;MQRankSum=-2.361;QD=16.19;ReadPosRankSum=1.142;SOR=0.743;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1248C>T|p.Asp416Asp|1248/2304|1248/2304|416/767||	GT:AD:DP:GQ:PL	0/1:12,24:36:99:611,0,300	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4158	.	G	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.533;HaplotypeScore=8.1157;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=-0.393;QD=6.56;ReadPosRankSum=-0.407;SOR=0.399;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1228C>A|p.Leu410Met|1228/2304|1228/2304|410/767||	GT:AD:DP:GQ:PL	0/1:22,10:32:99:238,0,634	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4174	.	C	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.464;HaplotypeScore=6.2839;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=0;MQRankSum=-0.024;QD=3.49;ReadPosRankSum=-0.511;SOR=0.438;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1212G>T|p.Glu404Asp|1212/2304|1212/2304|404/767||	GT:AD:DP:GQ:PL	0/1:24,10:34:99:147,0,660	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4199	.	T	C	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2324;MLEAC=1;MLEAF=0.500;MQ=51.76;MQ0=0;MQRankSum=-2.847;QD=17.16;ReadPosRankSum=-1.250;SOR=0.527;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1187A>G|p.Tyr396Cys|1187/2304|1187/2304|396/767||	GT:AD:DP:GQ:PL	0/1:9,20:29:99:526,0,250	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4200	.	A	G	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2324;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=-2.924;QD=18.03;ReadPosRankSum=-1.427;SOR=0.602;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1186T>C|p.Tyr396His|1186/2304|1186/2304|396/767||	GT:AD:DP:GQ:PL	0/1:9,21:30:99:569,0,199	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4232	.	A	C,T	400.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.406;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.637;HaplotypeScore=6.4923;MLEAC=1,1;MLEAF=0.500,0.500;MQ=52.60;MQ0=0;MQRankSum=-2.536;QD=14.31;ReadPosRankSum=0.433;SOR=0.368;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1154T>G|p.Val385Gly|1154/2304|1154/2304|385/767||,T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1154T>A|p.Val385Asp|1154/2304|1154/2304|385/767||	GT:AD:DP:GQ:PL	1/2:8,9,11:29:74:429,157,349,74,0,260	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4236	.	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.4151;MLEAC=1;MLEAF=0.500;MQ=52.86;MQ0=0;MQRankSum=-2.782;QD=7.19;ReadPosRankSum=1.132;SOR=0.467;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1150T>C|p.Tyr384His|1150/2304|1150/2304|384/767||	GT:AD:DP:GQ:PL	0/1:21,9:30:99:244,0,594	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4238	.	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.709;HaplotypeScore=23.3310;MLEAC=1;MLEAF=0.500;MQ=53.55;MQ0=0;MQRankSum=-0.957;QD=5.17;ReadPosRankSum=0.547;SOR=0.916;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|11/21|c.1148C>T|p.Pro383Leu|1148/2304|1148/2304|383/767||	GT:AD:DP:GQ:PL	0/1:25,8:33:99:199,0,797	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4256	.	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;DP=34;Dels=0.00;ExcessHet=3.0103;FS=6.941;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=0;MQRankSum=-1.603;QD=3.93;ReadPosRankSum=2.125;SOR=1.136;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/20|c.1135-5T>C||||||	GT:AD:DP:GQ:PL	0/1:28,6:34:99:162,0,834	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4289	.	C	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.018;HaplotypeScore=4.3250;MLEAC=1;MLEAF=0.500;MQ=54.76;MQ0=0;MQRankSum=1.787;QD=3.23;ReadPosRankSum=2.311;SOR=2.833;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/20|c.1135-38G>T||||||	GT:AD:DP:GQ:PL	0/1:30,8:38:99:151,0,1009	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4305	.	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.276;HaplotypeScore=6.2382;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=0;MQRankSum=-1.030;QD=1.95;ReadPosRankSum=-0.177;SOR=0.595;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/20|c.1134+39T>C||||||	GT:AD:DP:GQ:PL	0/1:37,7:45:99:114,0,1227	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4322	.	A	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=-5.207;QD=3.80;ReadPosRankSum=-1.139;SOR=0.173;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/20|c.1134+22T>A||||||	GT:AD:DP:GQ:PL	0/1:31,10:41:99:184,0,1023	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4337	.	T	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;DP=43;Dels=0.00;ExcessHet=3.0103;FS=9.472;HaplotypeScore=8.3186;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-5.554;QD=5.09;ReadPosRankSum=-1.040;SOR=0.451;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/20|c.1134+7A>T||||||	GT:AD:DP:GQ:PL	0/1:32,9:43:99:237,0,1032	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4429	.	C	T	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.786;HaplotypeScore=15.4744;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-0.735;QD=15.30;ReadPosRankSum=-1.672;SOR=0.883;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/21|c.1049G>A|p.Arg350His|1049/2304|1049/2304|350/767||	GT:AD:DP:GQ:PL	0/1:16,26:43:99:671,0,459	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4439	.	T	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.269;HaplotypeScore=16.2819;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-1.468;QD=5.74;ReadPosRankSum=0.490;SOR=0.477;ANN=A|stop_gained|HIGH|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/21|c.1039A>T|p.Lys347*|1039/2304|1039/2304|347/767||;LOF=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00);NMD=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00)	GT:AD:DP:GQ:PL	0/1:30,13:44:99:275,0,848	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4441	.	A	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=-1.555;QD=4.88;ReadPosRankSum=0.922;SOR=0.560;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|10/21|c.1037T>A|p.Val346Glu|1037/2304|1037/2304|346/767||	GT:AD:DP:GQ:PL	0/1:31,12:44:99:238,0,942	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4461	.	CGTTGGCAAT	C	2660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DP=44;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.06;MQ0=0;MQRankSum=0.037;QD=22.17;ReadPosRankSum=0.112;SOR=1.426;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|9/20|c.1021-13_1021-5delATTGCCAAC||||||	GT:AD:DP:GQ:PL	0/1:15,25:44:99:2698,0,1505	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4483	.	C	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.351;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.06;MQ0=0;MQRankSum=-1.550;QD=5.07;ReadPosRankSum=0.201;SOR=0.454;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|9/20|c.1021-26G>A||||||	GT:AD:DP:GQ:PL	0/1:31,11:42:99:241,0,989	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4528	.	A	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=77;Dels=0.00;ExcessHet=3.0103;FS=12.573;HaplotypeScore=16.9095;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.212;QD=2.22;ReadPosRankSum=0.379;SOR=2.485;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|9/20|c.1020+22T>A||||||	GT:AD:DP:GQ:PL	0/1:66,11:77:99:199,0,2019	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4572	.	C	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9947;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=1;MQRankSum=-0.476;QD=0.77;ReadPosRankSum=-1.194;SOR=0.665;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|9/21|c.998G>T|p.Gly333Val|998/2304|998/2304|333/767||	GT:AD:DP:GQ:PL	0/1:68,8:76:87:87,0,1960	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4637	.	T	C	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.943;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=3;MQRankSum=0.000;QD=15.43;ReadPosRankSum=0.337;SOR=0.462;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/20|c.958-25A>G||||||	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1216,0,812	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4682	.	T	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3186;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=2;MQRankSum=0.699;QD=7.05;ReadPosRankSum=0.568;SOR=0.880;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/20|c.958-70A>G||||||	GT:AD:DP:GQ:PL	0/1:43,18:61:99:458,0,1219	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4713	.	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.2344;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-2.404;QD=0.57;ReadPosRankSum=-0.157;SOR=0.593;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/20|c.957+56A>G||||||	GT:AD:DP:GQ:PL	0/1:54,9:63:64:64,0,1623	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4739	.	T	C	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.208;HaplotypeScore=38.8094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.93;ReadPosRankSum=1.609;SOR=0.416;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/20|c.957+30A>G||||||	GT:AD:DP:GQ:PL	0/1:20,53:73:99:1483,0,384	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4746	.	G	A	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.040;HaplotypeScore=34.9874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.43;ReadPosRankSum=1.062;SOR=0.512;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/20|c.957+23C>T||||||	GT:AD:DP:GQ:PL	0/1:18,52:70:99:1458,0,406	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4749	.	C	T	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=35.9033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.19;ReadPosRankSum=2.401;SOR=0.594;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/20|c.957+20G>A||||||	GT:AD:DP:GQ:PL	0/1:40,31:71:99:823,0,1023	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4803	.	C	G	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.946;QD=13.33;ReadPosRankSum=-1.168;SOR=0.788;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/21|c.923G>C|p.Ser308Thr|923/2304|923/2304|308/767||	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1015,0,999	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4818	.	G	A	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=26.2238;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.562;QD=21.45;ReadPosRankSum=0.698;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/21|c.908C>T|p.Thr303Ile|908/2304|908/2304|303/767||	GT:AD:DP:GQ:PL	0/1:19,54:73:99:1594,0,497	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4826	.	C	T	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=27.1396;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-1.108;QD=11.84;ReadPosRankSum=-0.052;SOR=0.961;ANN=T|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|8/21|c.900G>A|p.Gly300Gly|900/2304|900/2304|300/767||	GT:AD:DP:GQ:PL	0/1:40,31:71:99:869,0,1126	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4884	.	T	C	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.6498;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=0.717;QD=5.95;ReadPosRankSum=-0.374;SOR=0.650;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|7/20|c.850-8A>G||||||	GT:AD:DP:GQ:PL	0/1:41,19:60:99:385,0,1189	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4889	.	A	G	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DP=60;Dels=0.00;ExcessHet=3.0103;FS=9.967;HaplotypeScore=20.6502;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.645;QD=20.15;ReadPosRankSum=-0.453;SOR=1.000;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|7/20|c.850-13T>C||||||	GT:AD:DP:GQ:PL	0/1:19,41:60:99:1237,0,456	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4944	.	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.524;HaplotypeScore=4.8148;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-1.351;QD=9.94;ReadPosRankSum=1.137;SOR=1.023;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|7/20|c.849+8C>T||||||	GT:AD:DP:GQ:PL	0/1:33,17:50:99:525,0,949	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	4965	.	T	C	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;DP=42;Dels=0.00;ExcessHet=3.0103;FS=15.429;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.267;QD=18.28;ReadPosRankSum=1.314;SOR=1.561;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|7/21|c.836A>G|p.Lys279Arg|836/2304|836/2304|279/767||	GT:AD:DP:GQ:PL	0/1:19,23:42:99:796,0,556	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5033	.	A	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.363;HaplotypeScore=10.9119;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=-3.909;QD=10.61;ReadPosRankSum=-1.461;SOR=0.412;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|7/21|c.768T>G|p.Asn256Lys|768/2304|768/2304|256/767||	GT:AD:DP:GQ:PL	0/1:22,12:43:99:389,0,589	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5039	.	A	G	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.709;HaplotypeScore=9.9961;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=-3.229;QD=15.75;ReadPosRankSum=-2.401;SOR=0.512;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|7/21|c.762T>C|p.Tyr254Tyr|762/2304|762/2304|254/767||	GT:AD:DP:GQ:PL	0/1:20,21:41:99:674,0,551	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5059	.	A	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.836;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=-4.668;QD=6.24;ReadPosRankSum=-0.154;SOR=0.355;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|7/21|c.742T>C|p.Leu248Leu|742/2304|742/2304|248/767||	GT:AD:DP:GQ:PL	0/1:31,13:44:99:303,0,962	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5077	.	C	G	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.439;HaplotypeScore=9.8300;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=-3.371;QD=13.90;ReadPosRankSum=0.608;SOR=0.718;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|6/20|c.733-9G>C||||||	GT:AD:DP:GQ:PL	0/1:22,21:44:99:626,0,628	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5078	.	C	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.618;HaplotypeScore=9.8300;MLEAC=1;MLEAF=0.500;MQ=56.31;MQ0=0;MQRankSum=0.756;QD=3.44;ReadPosRankSum=0.698;SOR=1.006;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|6/20|c.733-10G>T||||||	GT:AD:DP:GQ:PL	0/1:37,8:45:99:183,0,1073	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5083	.	A	G	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.133;HaplotypeScore=8.9141;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=0;MQRankSum=-3.198;QD=15.34;ReadPosRankSum=0.199;SOR=0.368;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|6/20|c.733-15T>C||||||	GT:AD:DP:GQ:PL	0/1:21,25:46:99:734,0,628	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5088	.	T	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.112;HaplotypeScore=7.9982;MLEAC=1;MLEAF=0.500;MQ=56.98;MQ0=0;MQRankSum=-2.934;QD=14.73;ReadPosRankSum=0.563;SOR=0.411;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|6/20|c.733-20A>T||||||	GT:AD:DP:GQ:PL	0/1:22,27:49:99:750,0,585	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5141	.	T	A	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.675;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=1.412;QD=6.03;ReadPosRankSum=-0.827;SOR=1.749;ANN=A|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|6/20|c.732+6A>T||||||	GT:AD:DP:GQ:PL	0/1:39,14:53:99:348,0,997	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5215	.	G	T	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6900;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.183;QD=14.74;ReadPosRankSum=-0.543;SOR=0.787;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|6/21|c.664C>A|p.Gln222Lys|664/2304|664/2304|222/767||	GT:AD:DP:GQ:PL	0/1:24,31:55:99:839,0,697	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5345	.	C	T	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.045;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=0.986;QD=13.34;ReadPosRankSum=-2.958;SOR=1.041;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|5/20|c.570-36G>A||||||	GT:AD:DP:GQ:PL	0/1:35,32:67:99:922,0,1074	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5407	.	T	C	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-1.488;QD=13.80;ReadPosRankSum=2.507;SOR=0.705;ANN=C|splice_region_variant&synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|5/21|c.567A>G|p.Gln189Gln|567/2304|567/2304|189/767||	GT:AD:DP:GQ:PL	0/1:37,33:70:99:994,0,1118	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5440	.	G	T	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.1561;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=-1.613;QD=5.38;ReadPosRankSum=-0.097;SOR=0.784;ANN=T|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|5/21|c.534C>A|p.Ile178Ile|534/2304|534/2304|178/767||	GT:AD:DP:GQ:PL	0/1:54,20:75:99:426,0,1538	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5492	.	A	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;DP=64;Dels=0.00;ExcessHet=3.0103;FS=4.351;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-2.519;QD=4.92;ReadPosRankSum=-0.178;SOR=1.438;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|5/21|c.482T>C|p.Met161Thr|482/2304|482/2304|161/767||	GT:AD:DP:GQ:PL	0/1:48,15:64:99:338,0,1461	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5630	.	C	T	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.273;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=-1.624;QD=23.30;ReadPosRankSum=0.514;SOR=1.209;ANN=T|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|4/21|c.414G>A|p.Val138Val|414/2304|414/2304|138/767||	GT:AD:DP:GQ:PL	0/1:15,50:66:99:1543,0,282	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5729	.	T	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-1.528;QD=7.78;ReadPosRankSum=0.237;SOR=0.773;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|3/20|c.373+16A>G||||||	GT:AD:DP:GQ:PL	0/1:30,12:42:99:355,0,901	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5807	.	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=1;MQRankSum=0.868;QD=9.23;ReadPosRankSum=-0.479;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|3/21|c.311C>T|p.Ser104Leu|311/2304|311/2304|104/767||	GT:AD:DP:GQ:PL	0/1:21,13:34:99:342,0,592	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5834	.	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9454;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=1;MQRankSum=-1.645;QD=10.02;ReadPosRankSum=0.701;SOR=0.458;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|3/21|c.284G>A|p.Ser95Asn|284/2304|284/2304|95/767||	GT:AD:DP:GQ:PL	0/1:18,14:32:99:349,0,465	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5942	.	A	AAG	824.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQ0=0;MQRankSum=1.568;QD=19.18;ReadPosRankSum=-1.986;SOR=0.859;ANN=AAG|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|2/20|c.236+13_236+14insCT||||||	GT:AD:DP:GQ:PL	0/1:23,20:43:99:862,0,970	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	5950	.	T	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQ0=0;MQRankSum=1.692;QD=9.70;ReadPosRankSum=-0.893;SOR=0.927;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|2/20|c.236+6A>G||||||	GT:AD:DP:GQ:PL	0/1:27,20:47:99:484,0,758	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6014	.	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;DP=68;Dels=0.00;ExcessHet=3.0103;FS=6.777;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=-3.729;QD=4.00;ReadPosRankSum=-0.206;SOR=1.899;ANN=A|stop_gained|HIGH|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|2/21|c.178C>T|p.Gln60*|178/2304|178/2304|60/767||;LOF=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00);NMD=(EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|1|1.00)	GT:AD:DP:GQ:PL	0/1:54,13:68:99:296,0,1511	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6032	.	G	A	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=1.914;QD=6.85;ReadPosRankSum=-0.733;SOR=0.536;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|2/21|c.160C>T|p.Arg54Cys|160/2304|160/2304|54/767||	GT:AD:DP:GQ:PL	0/1:46,23:69:99:501,0,1325	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6151	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=57;Dels=0.00;ExcessHet=3.0103;FS=3.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.759;QD=3.80;ReadPosRankSum=-1.081;SOR=1.802;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|2/21|c.41G>A|p.Gly14Glu|41/2304|41/2304|14/767||	GT:AD:DP:GQ:PL	0/1:47,10:57:99:245,0,1323	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6158	.	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.407;HaplotypeScore=19.8289;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=-0.796;QD=3.67;ReadPosRankSum=-0.920;SOR=1.956;ANN=C|missense_variant&splice_region_variant|MODERATE|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|2/21|c.34A>G|p.Ser12Gly|34/2304|34/2304|12/767||	GT:AD:DP:GQ:PL	0/1:49,10:59:99:245,0,1340	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6168	.	G	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.7037;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.296;QD=7.21;ReadPosRankSum=-1.130;SOR=0.722;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|1/20|c.32-8C>A||||||	GT:AD:DP:GQ:PL	0/1:38,17:55:99:425,0,1137	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6186	.	T	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.481;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-1.129;QD=11.69;ReadPosRankSum=-0.788;SOR=1.230;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|1/20|c.32-26A>G||||||	GT:AD:DP:GQ:PL	0/1:30,22:52:99:636,0,781	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6216	.	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-1.025;QD=10.64;ReadPosRankSum=-0.285;SOR=0.864;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|1/20|c.32-56C>T||||||	GT:AD:DP:GQ:PL	0/1:24,21:45:99:507,0,746	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6220	.	G	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-1.025;QD=10.64;ReadPosRankSum=0.148;SOR=0.686;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|1/20|c.32-60C>A||||||	GT:AD:DP:GQ:PL	0/1:24,21:45:99:507,0,744	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6241	.	T	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.59;MQ0=0;MQRankSum=0.989;QD=12.23;ReadPosRankSum=0.672;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|1/20|c.31+41A>G||||||	GT:AD:DP:GQ:PL	0/1:19,19:38:99:493,0,495	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	6307	.	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=1.744;QD=3.86;ReadPosRankSum=-0.364;SOR=0.105;ANN=T|synonymous_variant|LOW|EXON_scaffold36734_cov61_2123_2295|GENE_EXON_scaffold36734_cov61_2123_2295|transcript|Soaet10009349|protein_coding|1/21|c.6G>A|p.Leu2Leu|6/2304|6/2304|2/767||	GT:AD:DP:GQ:PL	0/1:12,4:16:90:90,0,366	scaffold36734_cov61	GLEAN	mRNA	2123	6312	0.43	-	.	ID=Soaet10009349
scaffold36734_cov61	86162	.	G	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;DP=43;Dels=0.00;ExcessHet=3.0103;FS=7.272;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.357;SOR=1.930;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.112G>A|p.Val38Met|112/1083|112/1083|38/360||	GT:AD:DP:GQ:PL	0/1:30,13:43:99:396,0,932	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86280	.	G	T	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.485;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.53;ReadPosRankSum=0.111;SOR=1.002;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.230G>T|p.Arg77Leu|230/1083|230/1083|77/360||	GT:AD:DP:GQ:PL	0/1:22,27:49:99:838,0,651	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86293	.	A	C	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.24;ReadPosRankSum=-0.505;SOR=0.683;ANN=C|synonymous_variant|LOW|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.243A>C|p.Thr81Thr|243/1083|243/1083|81/360||	GT:AD:DP:GQ:PL	0/1:20,30:50:99:940,0,578	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86301	.	G	A	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.56;ReadPosRankSum=-0.822;SOR=0.567;ANN=A|stop_gained|HIGH|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.251G>A|p.Trp84*|251/1083|251/1083|84/360||;LOF=(EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|1|1.00);NMD=(EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|1|1.00)	GT:AD:DP:GQ:PL	0/1:20,30:50:99:906,0,555	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86337	.	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.402;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.80;ReadPosRankSum=0.565;SOR=0.862;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.287G>A|p.Arg96Lys|287/1083|287/1083|96/360||	GT:AD:DP:GQ:PL	0/1:22,30:52:99:746,0,642	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86338	.	G	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.809;SOR=0.784;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.288G>T|p.Arg96Ser|288/1083|288/1083|96/360||	GT:AD:DP:GQ:PL	0/1:22,29:51:99:654,0,605	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86339	.	C	A	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.402;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.575;SOR=0.862;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.289C>A|p.Leu97Met|289/1083|289/1083|97/360||	GT:AD:DP:GQ:PL	0/1:22,30:52:99:690,0,643	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86382	.	T	C	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.946;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-0.131;SOR=0.310;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.332T>C|p.Phe111Ser|332/1083|332/1083|111/360||	GT:AD:DP:GQ:PL	0/1:20,35:55:99:935,0,485	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86427	.	G	A	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.185;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.505;QD=16.92;ReadPosRankSum=-0.542;SOR=0.298;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.377G>A|p.Arg126His|377/1083|377/1083|126/360||	GT:AD:DP:GQ:PL	0/1:18,36:54:99:942,0,461	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86510	.	T	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5683;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=0;MQRankSum=-1.706;QD=3.90;ReadPosRankSum=-1.019;SOR=0.586;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.460T>A|p.Leu154Met|460/1083|460/1083|154/360||	GT:AD:DP:GQ:PL	0/1:17,5:22:99:114,0,499	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	86545	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=56.42;MQ0=0;MQRankSum=-1.974;QD=3.49;ReadPosRankSum=-1.347;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_86051_86570|GENE_EXON_scaffold36734_cov61_86051_86570|transcript|Soaet10009350|protein_coding|1/4|c.495A>G|p.Ala165Ala|495/1083|495/1083|165/360||	GT:AD:DP:GQ:PL	0/1:13,3:16:84:84,0,402	scaffold36734_cov61	GLEAN	mRNA	86051	87382	0.89	+	.	ID=Soaet10009350
scaffold36734_cov61	131979	.	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=10;MQRankSum=-3.838;QD=5.10;ReadPosRankSum=-0.050;SOR=0.330;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|3/3|c.733G>A|p.Gly245Arg|733/804|733/804|245/267||	GT:AD:DP:GQ:PL	0/1:11,16:27:99:166,0,227	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132195	.	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.84;MQ0=1;MQRankSum=-1.313;QD=4.32;ReadPosRankSum=0.715;SOR=0.845;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|3/3|c.517C>T|p.Leu173Leu|517/804|517/804|173/267||	GT:AD:DP:GQ:PL	0/1:14,7:21:99:119,0,345	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132326	.	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=34.41;MQ0=0;MQRankSum=-1.510;QD=3.15;ReadPosRankSum=-0.922;SOR=1.265;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|2/2|c.463+28C>G||||||	GT:AD:DP:GQ:PL	0/1:13,6:19:88:88,0,357	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132329	.	G	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=34.41;MQ0=0;MQRankSum=-1.510;QD=2.62;ReadPosRankSum=-0.571;SOR=1.265;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|2/2|c.463+25C>A||||||	GT:AD:DP:GQ:PL	0/1:13,6:19:78:78,0,357	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132381	.	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.332;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=33.11;MQ0=0;MQRankSum=-0.963;QD=5.75;ReadPosRankSum=2.830;SOR=0.674;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|2/3|c.436T>C|p.Phe146Leu|436/804|436/804|146/267||	GT:AD:DP:GQ:PL	0/1:8,5:13:99:103,0,187	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132384	.	T	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.332;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=33.11;MQ0=0;MQRankSum=-0.963;QD=5.75;ReadPosRankSum=2.830;SOR=0.674;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|2/3|c.433A>T|p.Ile145Phe|433/804|433/804|145/267||	GT:AD:DP:GQ:PL	0/1:8,5:13:99:103,0,187	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132481	.	G	C	265.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;QD=24.16;SOR=1.270;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|2/3|c.336C>G|p.Asp112Glu|336/804|336/804|112/267||	GT:AD:DP:GQ:PL	1/1:0,11:11:24:294,24,0	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132517	.	A	G	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=49.16;MQ0=0;MQRankSum=-1.230;QD=0.85;ReadPosRankSum=-0.430;SOR=0.223;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|2/3|c.300T>C|p.Phe100Phe|300/804|300/804|100/267||	GT:AD:DP:GQ:PL	0/1:10,2:12:38:38,0,312	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132588	.	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=-3.511;QD=4.85;ReadPosRankSum=-0.588;SOR=0.836;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|2/3|c.229G>A|p.Ala77Thr|229/804|229/804|77/267||	GT:AD:DP:GQ:PL	0/1:17,5:22:99:135,0,523	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132650	.	T	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.06;MQ0=0;MQRankSum=-5.219;QD=3.65;ReadPosRankSum=0.780;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/2|c.199-32A>G||||||	GT:AD:DP:GQ:PL	0/1:24,5:29:99:134,0,591	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132653	.	G	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-5.121;QD=3.56;ReadPosRankSum=0.720;SOR=0.922;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/2|c.198+35C>G||||||	GT:AD:DP:GQ:PL	0/1:23,5:28:99:128,0,572	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132655	.	A	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-4.570;QD=3.99;ReadPosRankSum=0.924;SOR=1.329;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/2|c.198+33T>G||||||	GT:AD:DP:GQ:PL	0/1:22,6:28:99:140,0,510	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132659	.	G	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-5.121;QD=3.78;ReadPosRankSum=0.420;SOR=0.922;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/2|c.198+29C>G||||||	GT:AD:DP:GQ:PL	0/1:23,5:28:99:134,0,573	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132662	.	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=57.24;MQ0=0;MQRankSum=-5.293;QD=3.33;ReadPosRankSum=-0.785;SOR=0.846;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/2|c.198+26T>C||||||	GT:AD:DP:GQ:PL	0/1:23,7:30:99:128,0,566	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132675	.	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=53.90;MQ0=0;MQRankSum=-4.281;QD=6.68;ReadPosRankSum=-1.548;SOR=0.683;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/2|c.198+13T>C||||||	GT:AD:DP:GQ:PL	0/1:29,12:41:99:302,0,796	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132695	.	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.435;HaplotypeScore=16.1329;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-5.549;QD=7.35;ReadPosRankSum=-0.761;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/3|c.191C>T|p.Thr64Ile|191/804|191/804|64/267||	GT:AD:DP:GQ:PL	0/1:28,14:42:99:337,0,798	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132696	.	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.2170;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-4.145;QD=4.64;ReadPosRankSum=0.153;SOR=0.914;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/3|c.190A>G|p.Thr64Ala|190/804|190/804|64/267||	GT:AD:DP:GQ:PL	0/1:33,9:42:99:223,0,947	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132700	.	C	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.614;HaplotypeScore=15.2170;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=0;MQRankSum=-5.023;QD=6.16;ReadPosRankSum=0.219;SOR=1.089;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/3|c.186G>T|p.Trp62Cys|186/804|186/804|62/267||	GT:AD:DP:GQ:PL	0/1:27,9:41:99:250,0,833	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132702	.	A	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.2170;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=0;MQRankSum=-4.147;QD=4.81;ReadPosRankSum=0.852;SOR=0.866;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/3|c.184T>G|p.Trp62Gly|184/804|184/804|62/267||	GT:AD:DP:GQ:PL	0/1:34,9:43:99:235,0,994	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132704	.	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.2170;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-3.871;QD=4.26;ReadPosRankSum=1.350;SOR=0.922;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/3|c.182G>A|p.Arg61His|182/804|182/804|61/267||	GT:AD:DP:GQ:PL	0/1:36,9:45:99:220,0,1024	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132705	.	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.560;HaplotypeScore=15.2170;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-4.394;QD=3.68;ReadPosRankSum=1.475;SOR=1.123;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/3|c.181C>T|p.Arg61Cys|181/804|181/804|61/267||	GT:AD:DP:GQ:PL	0/1:35,10:45:99:194,0,968	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	132847	.	G	T	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=83;Dels=0.00;ExcessHet=3.0103;FS=5.770;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=1;MQRankSum=1.264;QD=17.29;ReadPosRankSum=0.927;SOR=0.616;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_131908_132248|GENE_EXON_scaffold36734_cov61_131908_132248|transcript|Soaet10009353|protein_coding|1/3|c.39C>A|p.Asp13Glu|39/804|39/804|13/267||	GT:AD:DP:GQ:PL	0/1:32,50:83:99:1446,0,721	scaffold36734_cov61	GLEAN	mRNA	131908	132885	0.12	-	.	ID=Soaet10009353
scaffold36734_cov61	143914	.	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.812;QD=13.53;ReadPosRankSum=-0.732;SOR=0.368;ANN=T|splice_region_variant&stop_retained_variant|LOW|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.660G>A|p.Ter220Ter|660/660|660/660|220/219||,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*2163G>A|||||2163|	GT:AD:DP:GQ:PL	0/1:3,6:9:69:150,0,69	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	143929	.	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=1;MQRankSum=0.589;QD=8.28;ReadPosRankSum=-1.309;SOR=0.148;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.645T>C|p.Cys215Cys|645/660|645/660|215/219||,G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*2148T>C|||||2148|	GT:AD:DP:GQ:PL	0/1:6,4:10:99:111,0,111	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	143993	.	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-3.087;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.581T>C|p.Phe194Ser|581/660|581/660|194/219||,G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*2084T>C|||||2084|	GT:AD:DP:GQ:PL	0/1:8,4:12:99:131,0,176	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144031	.	GA	G	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DP=17;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.315;QD=9.16;RPA=7,6;RU=A;ReadPosRankSum=0.928;SOR=1.402;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.542delT|p.Phe181fs|542/660|542/660|181/219||,G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*2045delT|||||2045|;LOF=(EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|1|1.00)	GT:AD:DP:GQ:PL	0/1:10,7:17:99:193,0,289	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144045	.	A	G	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=0.674;QD=12.65;ReadPosRankSum=1.493;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.529T>C|p.Phe177Leu|529/660|529/660|177/219||,G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*2032T>C|||||2032|	GT:AD:DP:GQ:PL	0/1:9,9:18:99:256,0,250	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144050	.	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=0.912;QD=13.99;ReadPosRankSum=0.408;SOR=0.495;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.524C>T|p.Thr175Ile|524/660|524/660|175/219||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*2027C>T|||||2027|	GT:AD:DP:GQ:PL	0/1:7,11:18:99:280,0,196	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144055	.	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.959;QD=13.62;ReadPosRankSum=1.118;SOR=0.385;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.519C>T|p.Ser173Ser|519/660|519/660|173/219||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*2022C>T|||||2022|	GT:AD:DP:GQ:PL	0/1:8,11:19:99:287,0,201	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144107	.	A	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=0.861;QD=14.28;ReadPosRankSum=-0.329;SOR=0.883;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.467T>G|p.Val156Gly|467/660|467/660|156/219||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*1970T>G|||||1970|	GT:AD:DP:GQ:PL	0/1:9,15:24:99:371,0,241	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144121	.	C	T	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=0.861;QD=13.20;ReadPosRankSum=-0.836;SOR=0.883;ANN=T|synonymous_variant|LOW|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.453G>A|p.Pro151Pro|453/660|453/660|151/219||,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*1956G>A|||||1956|	GT:AD:DP:GQ:PL	0/1:9,15:24:99:345,0,253	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144177	.	G	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=1.100;QD=14.44;ReadPosRankSum=-0.227;SOR=0.412;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.397C>A|p.Arg133Ser|397/660|397/660|133/219||,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*1900C>A|||||1900|	GT:AD:DP:GQ:PL	0/1:10,10:20:99:317,0,363	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144360	.	T	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.199;SOR=1.371;ANN=A|missense_variant&splice_region_variant|MODERATE|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|2/2|c.214A>T|p.Ile72Phe|214/660|214/660|72/219||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*1717A>T|||||1717|	GT:AD:DP:GQ:PL	0/1:8,3:12:89:89,0,227	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144585	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.000;SOR=0.693;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*1492C>A|||||1492|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|1/1|c.211+30C>A||||||	GT:AD:DP:GQ:PL	0/1:6,2:8:60:60,0,221	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144632	.	A	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.183;SOR=0.495;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|1/2|c.194T>A|p.Leu65His|194/660|194/660|65/219||,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*1445T>A|||||1445|	GT:AD:DP:GQ:PL	0/1:7,4:11:99:102,0,229	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	144649	.	C	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.566;QD=7.63;ReadPosRankSum=-0.501;SOR=0.368;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding|1/2|c.177G>T|p.Ala59Ala|177/660|177/660|59/219||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding||c.*1428G>T|||||1428|	GT:AD:DP:GQ:PL	0/1:8,6:14:99:135,0,259	scaffold36734_cov61	GLEAN	mRNA	143914	144825	0.88	-	.	ID=Soaet10009354
scaffold36734_cov61	146138	.	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.608;SOR=0.105;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|6/6|c.1682C>T|p.Ala561Val|1682/1743|1682/1743|561/580||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-1313C>T|||||1313|	GT:AD:DP:GQ:PL	0/1:6,4:10:97:97,0,187	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	146270	.	T	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-1445A>T|||||1445|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|5/5|c.1678-128A>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	147870	.	A	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.181;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=-1.595;QD=6.53;ReadPosRankSum=0.829;SOR=1.214;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|5/6|c.1644T>C|p.Asn548Asn|1644/1743|1644/1743|548/580||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3045T>C|||||3045|	GT:AD:DP:GQ:PL	0/1:16,8:24:99:185,0,439	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	147977	.	A	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=0.165;QD=14.48;ReadPosRankSum=1.085;SOR=0.582;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|5/6|c.1537T>C|p.Tyr513His|1537/1743|1537/1743|513/580||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3152T>C|||||3152|	GT:AD:DP:GQ:PL	0/1:15,18:33:99:506,0,431	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	147998	.	G	T	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-0.328;QD=15.84;ReadPosRankSum=-1.524;SOR=0.656;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|5/6|c.1516C>A|p.His506Asn|1516/1743|1516/1743|506/580||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3173C>A|||||3173|	GT:AD:DP:GQ:PL	0/1:15,23:38:99:630,0,410	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148066	.	G	A	1260.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=32.88;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|5/6|c.1448C>T|p.Ser483Leu|1448/1743|1448/1743|483/580||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3241C>T|||||3241|	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1289,96,0	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148074	.	A	C	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.01;MQ0=0;MQRankSum=-1.577;QD=17.99;ReadPosRankSum=-0.658;SOR=0.683;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|5/6|c.1440T>G|p.Phe480Leu|1440/1743|1440/1743|480/580||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3249T>G|||||3249|	GT:AD:DP:GQ:PL	0/1:15,21:37:99:676,0,406	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148202	.	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.428;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.707;QD=18.21;ReadPosRankSum=-0.749;SOR=0.934;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|4/6|c.1348G>A|p.Val450Ile|1348/1743|1348/1743|450/580||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3377G>A|||||3377|	GT:AD:DP:GQ:PL	0/1:13,19:32:99:611,0,294	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148246	.	G	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-3.452;QD=11.91;ReadPosRankSum=0.308;SOR=0.712;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|4/6|c.1304C>T|p.Thr435Met|1304/1743|1304/1743|435/580||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3421C>T|||||3421|	GT:AD:DP:GQ:PL	0/1:21,17:38:99:481,0,542	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148285	.	C	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-3.774;QD=10.75;ReadPosRankSum=0.449;SOR=0.684;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|4/6|c.1265G>C|p.Cys422Ser|1265/1743|1265/1743|422/580||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3460G>C|||||3460|	GT:AD:DP:GQ:PL	0/1:22,15:37:99:426,0,641	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148303	.	A	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-3.643;QD=10.41;ReadPosRankSum=-0.474;SOR=0.412;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|4/6|c.1247T>C|p.Phe416Ser|1247/1743|1247/1743|416/580||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3478T>C|||||3478|	GT:AD:DP:GQ:PL	0/1:22,16:38:99:424,0,647	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148304	.	A	G	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.290;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-3.643;QD=11.34;ReadPosRankSum=-0.533;SOR=0.412;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|4/6|c.1246T>C|p.Phe416Leu|1246/1743|1246/1743|416/580||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3479T>C|||||3479|	GT:AD:DP:GQ:PL	0/1:22,16:38:99:459,0,647	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148382	.	C	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.110;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-1.867;QD=8.63;ReadPosRankSum=1.022;SOR=1.053;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|4/6|c.1168G>T|p.Asp390Tyr|1168/1743|1168/1743|390/580||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-3557G>T|||||3557|	GT:AD:DP:GQ:PL	0/1:23,13:36:99:339,0,607	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148928	.	C	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=53.90;MQ0=0;MQRankSum=-4.557;QD=2.92;ReadPosRankSum=1.158;SOR=0.892;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|4/6|c.622G>T|p.Val208Leu|622/1743|622/1743|208/580||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-4103G>T|||||4103|	GT:AD:DP:GQ:PL	0/1:18,9:27:99:107,0,480	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	148975	.	C	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=19;Dels=0.00;ExcessHet=3.0103;FS=9.234;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=53.84;MQ0=0;MQRankSum=-4.127;QD=3.78;ReadPosRankSum=-0.139;SOR=3.611;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-4150G>C|||||4150|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|3/5|c.613+25G>C||||||	GT:AD:DP:GQ:PL	0/1:14,5:19:99:100,0,388	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	149006	.	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;DP=22;Dels=0.00;ExcessHet=3.0103;FS=10.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-3.854;QD=2.17;ReadPosRankSum=0.170;SOR=3.245;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|3/6|c.607A>G|p.Met203Val|607/1743|607/1743|203/580||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-4181A>G|||||4181|	GT:AD:DP:GQ:PL	0/1:18,4:22:76:76,0,535	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	149009	.	G	C	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-3.854;QD=1.17;ReadPosRankSum=0.255;SOR=3.245;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|3/6|c.604C>G|p.Pro202Ala|604/1743|604/1743|202/580||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-4184C>G|||||4184|	GT:AD:DP:GQ:PL	0/1:18,4:22:54:54,0,542	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	149012	.	T	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;DP=22;Dels=0.00;ExcessHet=3.0103;FS=9.840;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-3.854;QD=3.03;ReadPosRankSum=0.511;SOR=3.245;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_146077_146142|GENE_EXON_scaffold36734_cov61_146077_146142|transcript|Soaet10009355|protein_coding|3/6|c.601A>C|p.Ile201Leu|601/1743|601/1743|201/580||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_143914_144362|GENE_EXON_scaffold36734_cov61_143914_144362|transcript|Soaet10009354|protein_coding||c.-4187A>C|||||4187|	GT:AD:DP:GQ:PL	0/1:18,4:22:95:95,0,495	scaffold36734_cov61	GLEAN	mRNA	146077	149758	0.38	-	.	ID=Soaet10009355
scaffold36734_cov61	164196	.	G	A	729.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_163785_163991|GENE_EXON_scaffold36734_cov61_163785_163991|transcript|Soaet10009357|protein_coding|1/2|c.208-28G>A||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:54:758,54,0	scaffold36734_cov61	GLEAN	mRNA	163785	164445	1.00	+	.	ID=Soaet10009357
scaffold36734_cov61	170739	.	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.329;QD=10.67;ReadPosRankSum=-0.801;SOR=0.664;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_170455_170763|GENE_EXON_scaffold36734_cov61_170455_170763|transcript|Soaet10009359|protein_coding|1/1|c.285G>A|p.Lys95Lys|285/309|285/309|95/102||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_171844_172104|GENE_EXON_scaffold36734_cov61_171844_172104|transcript|Soaet10009361|protein_coding||c.*1105C>T|||||1105|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_174556_174792|GENE_EXON_scaffold36734_cov61_174556_174792|transcript|Soaet10009362|protein_coding||c.*3817C>T|||||3817|	GT:AD:DP:GQ:PL	0/1:30,19:49:99:551,0,852	scaffold36734_cov61	GLEAN	mRNA	170455	170763	1.00	+	.	ID=Soaet10009359
scaffold36734_cov61	174615	.	A	ATCCGCCTCCGCC	871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DP=20;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=1.370;QD=16.76;RPA=3,5;RU=TCCGCC;ReadPosRankSum=-1.777;SOR=0.704;STR;ANN=ATCCGCCTCCGCC|conservative_inframe_insertion|MODERATE|EXON_scaffold36734_cov61_174556_174792|GENE_EXON_scaffold36734_cov61_174556_174792|transcript|Soaet10009362|protein_coding|1/1|c.166_177dupGGCGGAGGCGGA|p.Gly56_Gly59dup|177/237|177/237|59/78||,ATCCGCCTCCGCC|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_171844_172104|GENE_EXON_scaffold36734_cov61_171844_172104|transcript|Soaet10009361|protein_coding||c.-2523_-2512dupGGCGGAGGCGGA|||||2512|,ATCCGCCTCCGCC|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_170455_170763|GENE_EXON_scaffold36734_cov61_170455_170763|transcript|Soaet10009359|protein_coding||c.*3852_*3853insTCCGCCTCCGCC|||||3853|,ATCCGCCTCCGCC|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.*1783_*1794dupGGCGGAGGCGGA|||||1794|,ATCCGCCTCCGCC|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding||c.*4294_*4305dupGGCGGAGGCGGA|||||4305|	GT:AD:DP:GQ:PL	0/1:3,10:18:99:909,0,382	scaffold36734_cov61	GLEAN	mRNA	174556	174792	1.00	-	.	ID=Soaet10009362
scaffold36734_cov61	179853	.	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.366;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.124;SOR=1.552;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3201T>C|||||3201|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1078-375T>C||||||	GT:AD:DP:GQ:PL	0/1:24,11:35:99:301,0,635	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	179943	.	G	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.228;QD=9.72;ReadPosRankSum=-2.495;SOR=1.179;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3291C>G|||||3291|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1078-465C>G||||||	GT:AD:DP:GQ:PL	0/1:14,8:22:99:242,0,339	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	179992	.	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4084;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.854;SOR=0.495;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3340C>T|||||3340|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1078-514C>T||||||	GT:AD:DP:GQ:PL	0/1:14,5:21:99:118,0,419	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	180012	.	T	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.193;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-0.776;QD=6.86;ReadPosRankSum=0.206;SOR=0.532;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3360A>T|||||3360|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1078-534A>T||||||	GT:AD:DP:GQ:PL	0/1:9,7:16:99:138,0,265	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	180016	.	G	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.193;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=0.776;QD=14.80;ReadPosRankSum=-0.103;SOR=2.048;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3364C>T|||||3364|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1078-538C>T||||||	GT:AD:DP:GQ:PL	0/1:7,9:16:99:265,0,178	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	180072	.	G	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.32;ReadPosRankSum=-0.327;SOR=1.270;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3420C>G|||||3420|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1077+504C>G||||||	GT:AD:DP:GQ:PL	0/1:4,11:15:99:303,0,131	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	180210	.	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=1.091;QD=12.13;ReadPosRankSum=0.657;SOR=0.740;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3558C>T|||||3558|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1077+366C>T||||||	GT:AD:DP:GQ:PL	0/1:11,11:22:99:295,0,284	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	180442	.	A	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.509;SOR=0.512;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3790T>C|||||3790|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|8/9|c.1077+134T>C||||||	GT:AD:DP:GQ:PL	0/1:18,12:30:99:351,0,445	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	180650	.	T	C	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=1;MQRankSum=0.000;QD=13.72;ReadPosRankSum=0.000;SOR=0.357;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-3998A>G|||||3998|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|7/9|c.1024-21A>G||||||	GT:AD:DP:GQ:PL	0/1:14,22:36:99:522,0,302	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	180704	.	A	G	1005.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.94;ReadPosRankSum=-1.348;SOR=0.311;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|7/9|c.1023+4T>C||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-4052T>C|||||4052|	GT:AD:DP:GQ:PL	1/1:1,35:36:38:1034,38,0	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	181491	.	C	A	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.993;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-1.496;SOR=2.833;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_176410_176652|GENE_EXON_scaffold36734_cov61_176410_176652|transcript|Soaet10009363|protein_coding||c.-4839G>T|||||4839|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|5/9|c.771+45G>T||||||	GT:AD:DP:GQ:PL	0/1:13,12:25:99:385,0,356	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	182292	.	A	C	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-0.169;SOR=0.633;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|2/9|c.333-12T>G||||||	GT:AD:DP:GQ:PL	0/1:21,18:39:99:456,0,557	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	183029	.	G	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-1.131;SOR=0.732;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding|1/10|c.42C>T|p.Asp14Asp|42/1419|42/1419|14/472||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.-4402G>A|||||4402|	GT:AD:DP:GQ:PL	0/1:16,20:37:99:511,0,512	scaffold36734_cov61	GLEAN	mRNA	178921	183070	0.48	-	.	ID=Soaet10009364
scaffold36734_cov61	187441	.	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-0.141;SOR=0.477;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding|1/3|c.11C>T|p.Ser4Leu|11/1158|11/1158|4/385||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding||c.-4371G>A|||||4371|,T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.-4152C>T|||||4152|	GT:AD:DP:GQ:PL	0/1:10,11:21:99:328,0,280	scaffold36734_cov61	GLEAN	mRNA	187431	189980	1.00	+	.	ID=Soaet10009365
scaffold36734_cov61	187545	.	T	G	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.790;SOR=0.627;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding|1/3|c.115T>G|p.Ser39Ala|115/1158|115/1158|39/385||,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_178921_179145|GENE_EXON_scaffold36734_cov61_178921_179145|transcript|Soaet10009364|protein_coding||c.-4475A>C|||||4475|,G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.-4048T>G|||||4048|	GT:AD:DP:GQ:PL	0/1:16,11:27:99:356,0,451	scaffold36734_cov61	GLEAN	mRNA	187431	189980	1.00	+	.	ID=Soaet10009365
scaffold36734_cov61	188741	.	A	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.561;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-1.171;SOR=0.399;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.-2852A>T|||||2852|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.*4309T>A|||||4309|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding|2/2|c.1002+213A>T||||||	GT:AD:DP:GQ:PL	0/1:19,10:29:99:238,0,538	scaffold36734_cov61	GLEAN	mRNA	187431	189980	1.00	+	.	ID=Soaet10009365
scaffold36734_cov61	189644	.	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.720;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.561;SOR=1.095;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.-1949G>A|||||1949|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.*3406C>T|||||3406|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding|2/2|c.1003-181G>A||||||	GT:AD:DP:GQ:PL	0/1:22,6:28:99:185,0,622	scaffold36734_cov61	GLEAN	mRNA	187431	189980	1.00	+	.	ID=Soaet10009365
scaffold36734_cov61	189973	.	G	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.763;SOR=0.776;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding|3/3|c.1151G>T|p.Arg384Leu|1151/1158|1151/1158|384/385||,T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.-1620G>T|||||1620|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.*3077C>A|||||3077|	GT:AD:DP:GQ:PL	0/1:29,13:42:99:404,0,762	scaffold36734_cov61	GLEAN	mRNA	187431	189980	1.00	+	.	ID=Soaet10009365
scaffold36734_cov61	191920	.	A	G	520.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.93;SOR=0.914;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding|1/1|c.328A>G|p.Thr110Ala|328/393|328/393|110/130||,G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.*1940A>G|||||1940|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.*1130T>C|||||1130|	GT:AD:DP:GQ:PL	1/1:0,18:18:39:549,39,0	scaffold36734_cov61	GLEAN	mRNA	191593	191985	1.00	+	.	ID=Soaet10009366
scaffold36734_cov61	193947	.	T	C	644.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.70;SOR=0.784;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.*3967T>C|||||3967|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*1962T>C|||||1962|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|6/8|c.1219-155A>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:48:673,48,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	193990	.	T	G	634.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.74;SOR=0.892;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.*4010T>G|||||4010|,G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*2005T>G|||||2005|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|6/8|c.1219-198A>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:48:663,48,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	194674	.	C	T	900.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.06;SOR=0.760;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.*4694C>T|||||4694|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*2689C>T|||||2689|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*4551G>A|||||4551|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|6/8|c.1218+128G>A||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:66:929,66,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	194724	.	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.05;SOR=0.804;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.*4744T>C|||||4744|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*2739T>C|||||2739|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*4501A>G|||||4501|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|6/8|c.1218+78A>G||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1146,81,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	194744	.	G	GT	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;DP=31;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.52;RPA=3,4;RU=T;ReadPosRankSum=-2.799;SOR=0.895;STR;ANN=GT|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.*4764_*4765insT|||||4765|,GT|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*2759_*2760insT|||||2760|,GT|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*4480_*4481insA|||||4480|,GT|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|6/8|c.1218+57_1218+58insA||||||	GT:AD:DP:GQ:PL	0/1:18,12:31:99:383,0,619	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	194933	.	C	T	858.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=33.03;SOR=0.846;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_187431_188362|GENE_EXON_scaffold36734_cov61_187431_188362|transcript|Soaet10009365|protein_coding||c.*4953C>T|||||4953|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*2948C>T|||||2948|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*4292G>A|||||4292|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|5/8|c.1107-20G>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:27:63:887,63,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	195230	.	A	C	684.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.77;SOR=0.963;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*3245A>C|||||3245|,C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*3995T>G|||||3995|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|4/8|c.1003-108T>G||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:54:713,54,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	195512	.	C	T	1152.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.12;SOR=0.954;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|4/9|c.997G>A|p.Val333Met|997/1554|997/1554|333/517||,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*3527C>T|||||3527|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*3713G>A|||||3713|	GT:AD:DP:GQ:PL	1/1:0,41:41:84:1181,84,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	196171	.	TTGCATCCCAAATAAAA	T	5064.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=33.92;SOR=0.997;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*4187_*4202delTGCATCCCAAATAAAA|||||4187|,T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*3038_*3053delTTTTATTTGGGATGCA|||||3053|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|2/8|c.553-138_553-123delTTTTATTTGGGATGCA||||||	GT:AD:DP:GQ:PL	1/1:0,28:31:84:5102,84,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	196406	.	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.277;SOR=0.459;ANN=A|synonymous_variant|LOW|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|2/9|c.492C>T|p.Asn164Asn|492/1554|492/1554|164/517||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*4421G>A|||||4421|,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*2819C>T|||||2819|	GT:AD:DP:GQ:PL	0/1:15,10:25:99:295,0,481	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	196831	.	C	CT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.87;RPA=10,11;RU=T;ReadPosRankSum=-0.215;SOR=0.693;STR;ANN=CT|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_191593_191985|GENE_EXON_scaffold36734_cov61_191593_191985|transcript|Soaet10009366|protein_coding||c.*4846_*4847insT|||||4847|,CT|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*2393_*2394insA|||||2393|,CT|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|1/8|c.256-190_256-189insA||||||	GT:AD:DP:GQ:PL	0/1:9,9:19:99:197,0,153	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	197175	.	T	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.477;QD=7.93;ReadPosRankSum=-0.050;SOR=1.256;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*2050A>G|||||2050|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|1/8|c.255+215A>G||||||	GT:AD:DP:GQ:PL	0/1:11,6:17:99:163,0,337	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	197248	.	TCCGATAA	T	1754.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=26.02;SOR=0.804;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*1970_*1976delTTATCGG|||||1976|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|1/8|c.255+135_255+141delTTATCGG||||||	GT:AD:DP:GQ:PL	1/1:0,17:19:51:1792,51,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	197282	.	G	GAAAAAA	1170.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;RPA=2,8;RU=A;SOR=0.976;STR;ANN=GAAAAAA|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*1942_*1943insTTTTTT|||||1942|,GAAAAAA|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|1/8|c.255+107_255+108insTTTTTT||||||	GT:AD:DP:GQ:PL	1/1:0,14:16:42:1208,42,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	197286	.	TTTTTTA	T	1293.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=31.21;SOR=0.976;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*1933_*1938delTAAAAA|||||1938|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|1/8|c.255+98_255+103delTAAAAA||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:42:1331,42,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	197550	.	T	C	924.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.90;SOR=1.112;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding|1/9|c.95A>G|p.Lys32Arg|95/1554|95/1554|32/517||,C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding||c.*1675A>G|||||1675|	GT:AD:DP:GQ:PL	1/1:0,32:32:69:953,69,0	scaffold36734_cov61	GLEAN	mRNA	193050	197644	0.78	-	.	ID=Soaet10009367
scaffold36734_cov61	199529	.	A	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.19;ReadPosRankSum=1.034;SOR=0.631;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-1885T>A|||||1885|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|6/6|c.508-176T>A||||||	GT:AD:DP:GQ:PL	0/1:20,15:36:99:420,0,634	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	199603	.	C	A	1209.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=1;QD=28.13;SOR=0.892;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-1959G>T|||||1959|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|6/6|c.507+147G>T||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:87:1238,87,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	199788	.	A	G	1069.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;SOR=0.749;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2144T>C|||||2144|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|5/6|c.494-25T>C||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1098,78,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	199839	.	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.34;SOR=0.818;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2195T>C|||||2195|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|5/6|c.493+40T>C||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1095,78,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	199876	.	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.22;SOR=0.892;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|5/6|c.493+3A>G||||||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2232A>G|||||2232|	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1058,75,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	199927	.	T	C	966.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.30;SOR=0.880;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|5/7|c.445A>G|p.Met149Val|445/636|445/636|149/211||,C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2283A>G|||||2283|	GT:AD:DP:GQ:PL	1/1:0,33:33:72:995,72,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200144	.	AAC	A	472.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.32;RPA=4,3;RU=AC;SOR=1.802;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2502_-2501delGT|||||2501|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.424-198_424-197delGT||||||	GT:AD:DP:GQ:PL	1/1:0,11:12:33:510,33,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200156	.	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.77;ReadPosRankSum=0.566;SOR=0.593;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2512T>C|||||2512|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.424-208T>C||||||	GT:AD:DP:GQ:PL	0/1:6,8:14:99:221,0,178	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200301	.	A	G	438.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.859;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.81;ReadPosRankSum=1.736;SOR=0.481;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2657T>C|||||2657|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.424-353T>C||||||	GT:AD:DP:GQ:PL	1/1:1,16:17:33:467,33,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200333	.	T	C	643.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.99;SOR=1.179;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2689A>G|||||2689|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.423+341A>G||||||	GT:AD:DP:GQ:PL	1/1:0,23:24:48:672,48,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200414	.	CA	C	654.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.57;RPA=5,4;RU=A;SOR=0.693;STR;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2771delT|||||2771|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.423+259delT||||||	GT:AD:DP:GQ:PL	1/1:0,18:19:54:692,54,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200421	.	T	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.045;SOR=0.694;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2777A>T|||||2777|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.423+253A>T||||||	GT:AD:DP:GQ:PL	0/1:7,11:18:99:258,0,188	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200436	.	AATATATATATGTATATATATATAT	AAT,A	3507.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=28.60;SOR=0.941;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2816_-2793delATATATATATATACATATATATAT|||||2793|,AAT|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-2816_-2795delATATATATATATACATATATAT|||||2795|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.423+214_423+237delATATATATATATACATATATATAT||||||,AAT|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|4/6|c.423+214_423+235delATATATATATATACATATATAT||||||	GT:AD:DP:GQ:PL	1/2:0,6,10:17:99:3545,427,379,259,0,211	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200934	.	A	C	793.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.07;SOR=1.270;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-3290T>G|||||3290|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|3/6|c.219-56T>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:822,60,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200986	.	G	A	830.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.738;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=82.8665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.65;ReadPosRankSum=-0.599;SOR=0.356;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-3342C>T|||||3342|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|3/6|c.218+32C>T||||||	GT:AD:DP:GQ:PL	1/1:1,28:29:27:859,27,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	200992	.	GACATAAAGAATAAGA	G	4750.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=0.378;QD=32.76;ReadPosRankSum=-0.180;SOR=0.356;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-3363_-3349delTCTTATTCTTTATGT|||||3349|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|3/6|c.218+11_218+25delTCTTATTCTTTATGT||||||	GT:AD:DP:GQ:PL	0/1:1,28:30:92:4788,0,92	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	201099	.	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=-0.463;QD=3.35;ReadPosRankSum=-0.355;SOR=1.148;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|3/7|c.137C>T|p.Ser46Phe|137/636|137/636|46/211||,A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-3455C>T|||||3455|	GT:AD:DP:GQ:PL	0/1:24,7:31:99:132,0,661	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	201147	.	G	A	687.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.782;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;MQRankSum=0.392;QD=25.48;ReadPosRankSum=-1.421;SOR=0.368;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-3503C>T|||||3503|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|2/6|c.132-43C>T||||||	GT:AD:DP:GQ:PL	1/1:1,26:27:15:716,15,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	201353	.	A	T	1095.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.23;SOR=1.085;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-3709T>A|||||3709|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|2/6|c.131+31T>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1124,84,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	201568	.	A	T	1115.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.16;SOR=0.859;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-3924T>A|||||3924|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|1/6|c.49-102T>A||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1144,84,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	201677	.	C	A	1067.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.37;SOR=1.473;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_193050_193166|GENE_EXON_scaffold36734_cov61_193050_193166|transcript|Soaet10009367|protein_coding||c.-4033G>T|||||4033|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_199225_199353|GENE_EXON_scaffold36734_cov61_199225_199353|transcript|Soaet10009368|protein_coding|1/6|c.48+45G>T||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:78:1096,78,0	scaffold36734_cov61	GLEAN	mRNA	199225	201769	0.28	-	.	ID=Soaet10009368
scaffold36734_cov61	222510	.	C	T	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|1/8|c.230+125C>T||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	222741	.	C	A	201.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.83;SOR=2.584;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|1/8|c.231-139C>A||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:18:230,18,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	222786	.	A	C	248.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.64;SOR=2.093;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|1/8|c.231-94A>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:21:277,21,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	222812	.	A	G	277.8	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|1/8|c.231-68A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:21:306,21,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	223899	.	T	C	221.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.69;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|4/8|c.960+37T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:18:250,18,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	223979	.	G	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-1.180;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|4/8|c.960+117G>T||||||	GT:AD:DP:GQ:PL	0/1:4,5:9:74:117,0,74	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	224576	.	T	A	146.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SOR=0.941;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*4568A>T|||||4568|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|4/8|c.961-201T>A||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:12:174,12,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	224699	.	A	G	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*4445T>C|||||4445|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|4/8|c.961-78A>G||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	224950	.	T	A	99.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SOR=1.609;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*4194A>T|||||4194|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|5/8|c.1044+90T>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:127,9,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	224966	.	A	G	56.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SOR=2.303;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*4178T>C|||||4178|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|5/8|c.1044+106A>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	225546	.	T	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.033;SOR=0.941;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*3598A>T|||||3598|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|6/8|c.1124-42T>A||||||	GT:AD:DP:GQ:PL	0/1:16,7:23:99:132,0,395	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	225549	.	T	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.201;SOR=0.941;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*3595A>T|||||3595|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|6/8|c.1124-39T>A||||||	GT:AD:DP:GQ:PL	0/1:16,7:23:99:128,0,395	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	225549	.	T	TTAA	570.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;DP=23;ExcessHet=3.0103;FS=2.271;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.58;RPA=5,6;RU=TAA;ReadPosRankSum=-0.632;SOR=1.336;STR;ANN=TTAA|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*3594_*3595insTTA|||||3594|,TTAA|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|6/8|c.1124-39_1124-38insTAA||||||	GT:AD:DP:GQ:PL	1/1:5,12:23:15:608,15,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226119	.	A	ACACAAAATGCTTTTAAG	1898.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.51;SOR=0.693;ANN=ACACAAAATGCTTTTAAG|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*3024_*3025insCTTAAAAGCATTTTGTG|||||3024|,ACACAAAATGCTTTTAAG|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-237_1231-236insCACAAAATGCTTTTAAG||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:30:1936,30,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226126	.	A	C	224.84	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SOR=0.859;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*3018T>G|||||3018|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-230A>C||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:18:253,18,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226179	.	T	C	313.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SOR=0.693;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2965A>G|||||2965|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-177T>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:24:342,24,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226213	.	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.84;ReadPosRankSum=0.710;SOR=0.207;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2931G>A|||||2931|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-143C>T||||||	GT:AD:DP:GQ:PL	0/1:5,9:14:99:222,0,167	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226227	.	T	C	490.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=1.371;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2917A>G|||||2917|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-129T>C||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:36:519,36,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226237	.	G	C	491.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.88;SOR=1.292;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2907C>G|||||2907|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-119G>C||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:36:520,36,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226264	.	A	C	456.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SOR=1.127;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2880T>G|||||2880|,C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-92A>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:33:485,33,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226304	.	A	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.592;SOR=0.561;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2840T>A|||||2840|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-52A>T||||||	GT:AD:DP:GQ:PL	0/1:11,11:22:99:267,0,224	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226319	.	A	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.653;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.232;SOR=0.760;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2825T>C|||||2825|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|7/8|c.1231-37A>G||||||	GT:AD:DP:GQ:PL	0/1:14,12:26:99:260,0,323	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226573	.	A	G	235.84	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SOR=0.859;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2571T>C|||||2571|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1352+96A>G||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:18:264,18,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226604	.	T	G	277.8	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SOR=0.859;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2540A>C|||||2540|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1352+127T>G||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:21:306,21,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226609	.	A	G	272.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SOR=0.693;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2535T>C|||||2535|,G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1352+132A>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:21:301,21,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226720	.	T	TA	223.8	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.37;SOR=0.693;ANN=TA|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2423_*2424insT|||||2423|,TA|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1352+243_1352+244insA||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:18:261,18,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226727	.	A	T	104.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SOR=1.022;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2417T>A|||||2417|,T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1352+250A>T||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:9:132,9,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226760	.	G	A	143.03	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.61;SOR=1.022;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2384C>T|||||2384|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1353-245G>A||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:12:171,12,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226861	.	C	CGA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.59;RPA=2,3;RU=GA;ReadPosRankSum=-0.157;SOR=0.582;STR;ANN=CGA|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2282_*2283insTC|||||2282|,CGA|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1353-144_1353-143insGA||||||	GT:AD:DP:GQ:PL	0/1:3,5:8:99:218,0,121	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	226951	.	T	A	303.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.62;SOR=1.270;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding||c.*2193A>T|||||2193|,A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding|8/8|c.1353-54T>A||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:24:332,24,0	scaffold36734_cov61	GLEAN	mRNA	222156	227098	1.00	+	.	ID=Soaet10009369
scaffold36734_cov61	229230	.	T	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.534;SOR=1.051;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|11/11|c.2182A>T|p.Thr728Ser|2182/2268|2182/2268|728/755||,A|downstream_gene_variant|MODIFIER|EXON_scaffold36734_cov61_222156_222385|GENE_EXON_scaffold36734_cov61_222156_222385|transcript|Soaet10009369|protein_coding||c.*2132T>A|||||2132|	GT:AD:DP:GQ:PL	0/1:18,6:24:99:147,0,558	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	232200	.	T	C	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.861;SOR=0.829;ANN=C|missense_variant|MODERATE|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|5/11|c.508A>G|p.Thr170Ala|508/2268|508/2268|170/755||	GT:AD:DP:GQ:PL	0/1:19,16:35:99:420,0,558	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	232592	.	G	A	777.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.81;SOR=0.922;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|4/10|c.416-300C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:57:806,57,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	233127	.	T	C	333.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.68;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|4/10|c.416-835A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:27:362,27,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	233393	.	T	C	146.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SOR=1.329;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|4/10|c.415+711A>G||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:12:174,12,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	233554	.	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.674;SOR=0.916;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|4/10|c.415+550C>T||||||	GT:AD:DP:GQ:PL	0/1:1,3:4:31:76,0,31	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	233734	.	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-1.291;SOR=0.674;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|4/10|c.415+370T>C||||||	GT:AD:DP:GQ:PL	0/1:8,5:13:99:139,0,226	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	233930	.	T	A	265.8	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.23;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|4/10|c.415+174A>T||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:21:294,21,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	234352	.	T	C	910.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SOR=0.892;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|3/10|c.248-81A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:66:939,66,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	234623	.	T	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.92;ReadPosRankSum=-0.676;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|2/10|c.150-38A>G||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:99:252,0,215	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	234888	.	TA	T	205.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.64;MQ0=0;QD=17.14;RPA=17,16;RU=A;SOR=1.022;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|1/10|c.36+53delT||||||	GT:AD:DP:GQ:PL	1/1:0,12:13:35:243,35,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	234896	.	A	T	399.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;QD=28.56;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|1/10|c.36+46T>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:428,30,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	234897	.	A	G	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQ0=0;MQRankSum=1.047;QD=19.34;ReadPosRankSum=0.213;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|1/10|c.36+45T>C||||||	GT:AD:DP:GQ:PL	0/1:4,10:14:96:299,0,96	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	234913	.	C	T	435.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.13;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_229144_229679|GENE_EXON_scaffold36734_cov61_229144_229679|transcript|Soaet10009370|protein_coding|1/10|c.36+29G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:464,33,0	scaffold36734_cov61	GLEAN	mRNA	229144	234977	0.86	-	.	ID=Soaet10009370
scaffold36734_cov61	255024	.	A	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.623;SOR=0.458;ANN=T|missense_variant|MODERATE|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|3/3|c.376T>A|p.Ser126Thr|376/387|376/387|126/128||	GT:AD:DP:GQ:PL	0/1:35,8:43:99:190,0,964	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255026	.	C	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.392;SOR=0.813;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|3/3|c.374G>T|p.Cys125Phe|374/387|374/387|125/128||	GT:AD:DP:GQ:PL	0/1:34,10:44:99:224,0,974	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255185	.	C	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.780;SOR=0.685;ANN=A|missense_variant|MODERATE|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|3/3|c.215G>T|p.Ser72Ile|215/387|215/387|72/128||	GT:AD:DP:GQ:PL	0/1:27,31:58:99:772,0,740	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255221	.	C	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.185;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.918;SOR=0.465;ANN=G|missense_variant|MODERATE|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|3/3|c.179G>C|p.Cys60Ser|179/387|179/387|60/128||	GT:AD:DP:GQ:PL	0/1:44,14:59:99:320,0,1373	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255247	.	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.189;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.851;SOR=0.432;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|3/3|c.153T>C|p.His51His|153/387|153/387|51/128||	GT:AD:DP:GQ:PL	0/1:41,15:56:99:394,0,1176	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255271	.	A	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.681;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.630;SOR=0.359;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|3/3|c.129T>C|p.Tyr43Tyr|129/387|129/387|43/128||	GT:AD:DP:GQ:PL	0/1:32,17:49:99:467,0,997	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255322	.	G	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.206;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.66;ReadPosRankSum=0.796;SOR=0.293;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|2/2|c.92-14C>G||||||	GT:AD:DP:GQ:PL	0/1:28,11:40:99:249,0,838	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255338	.	C	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.202;SOR=0.484;ANN=G|intron_variant|MODIFIER|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|2/2|c.92-30G>C||||||	GT:AD:DP:GQ:PL	0/1:27,13:40:99:285,0,857	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255369	.	A	T	1282.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.29;SOR=1.347;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|2/2|c.91+6T>A||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:93:1311,93,0	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255400	.	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.445;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.580;SOR=1.270;ANN=G|synonymous_variant|LOW|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|2/3|c.66T>C|p.Ala22Ala|66/387|66/387|22/128||	GT:AD:DP:GQ:PL	0/1:26,11:37:99:287,0,762	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255480	.	T	C	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.828;SOR=0.622;ANN=C|intron_variant|MODIFIER|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|1/2|c.7-21A>G||||||	GT:AD:DP:GQ:PL	0/1:25,12:37:99:301,0,695	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255502	.	T	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.017;HaplotypeScore=8.9147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.26;ReadPosRankSum=1.760;SOR=1.237;ANN=A|intron_variant|MODIFIER|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|1/2|c.7-43A>T||||||	GT:AD:DP:GQ:PL	0/1:31,11:42:99:249,0,815	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold36734_cov61	255561	.	C	T	1438.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.97;SOR=0.776;ANN=T|intron_variant|MODIFIER|EXON_scaffold36734_cov61_255013_255308|GENE_EXON_scaffold36734_cov61_255013_255308|transcript|Soaet10009371|protein_coding|1/2|c.6+32G>A||||||	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1467,105,0	scaffold36734_cov61	GLEAN	mRNA	255013	255598	1.00	-	.	ID=Soaet10009371
scaffold143731_cov64	55346	.	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.107;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold143731_cov64_55240_55446|GENE_EXON_scaffold143731_cov64_55240_55446|transcript|Soaet10008292|protein_coding|1/1|c.101T>C|p.Val34Ala|101/207|101/207|34/68||	GT:AD:DP:GQ:PL	0/1:12,9:21:99:278,0,367	scaffold143731_cov64	GLEAN	mRNA	55240	55446	0.97	-	.	ID=Soaet10008292
scaffold143731_cov64	55373	.	A	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.956;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-0.874;SOR=2.424;ANN=G|missense_variant|MODERATE|EXON_scaffold143731_cov64_55240_55446|GENE_EXON_scaffold143731_cov64_55240_55446|transcript|Soaet10008292|protein_coding|1/1|c.74T>C|p.Met25Thr|74/207|74/207|25/68||	GT:AD:DP:GQ:PL	0/1:13,12:25:99:393,0,364	scaffold143731_cov64	GLEAN	mRNA	55240	55446	0.97	-	.	ID=Soaet10008292
scaffold143731_cov64	163218	.	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.83;ReadPosRankSum=0.297;SOR=0.892;ANN=C|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.4122A>G|p.Arg1374Arg|4122/4218|4122/4218|1374/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:195,0,105	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	163485	.	A	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.908;QD=6.98;ReadPosRankSum=-0.179;SOR=0.495;ANN=C|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3855T>G|p.Phe1285Leu|3855/4218|3855/4218|1285/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:105,0,190	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	163844	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=0.674;QD=5.72;ReadPosRankSum=-0.309;SOR=0.693;ANN=A|stop_gained|HIGH|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3496C>T|p.Gln1166*|3496/4218|3496/4218|1166/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,4:8:74:74,0,114	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	163893	.	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.674;QD=8.28;ReadPosRankSum=0.906;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3447C>T|p.Phe1149Phe|3447/4218|3447/4218|1149/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:111,0,150	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164059	.	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-1.501;SOR=0.991;ANN=C|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3281A>G|p.Glu1094Gly|3281/4218|3281/4218|1094/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:3,8:12:99:177,0,103	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164130	.	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.464;SOR=0.446;ANN=G|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3210T>C|p.Phe1070Phe|3210/4218|3210/4218|1070/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,4:9:99:111,0,114	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164138	.	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.231;SOR=0.446;ANN=G|stop_lost|HIGH|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3202T>C|p.Ter1068Glnext*?|3202/4218|3202/4218|1068/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,4:9:99:111,0,114	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164186	.	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-0.712;SOR=0.850;ANN=C|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3154A>G|p.Thr1052Ala|3154/4218|3154/4218|1052/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:144,0,111	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164227	.	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.180;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.3113T>C|p.Leu1038Ser|3113/4218|3113/4218|1038/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:111,0,153	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164341	.	G	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.674;SOR=1.034;ANN=T|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.2999C>A|p.Ala1000Asp|2999/4218|2999/4218|1000/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,114	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164515	.	T	TGAG	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.23;RPA=1,2;RU=GAG;ReadPosRankSum=-1.383;SOR=0.368;STR;ANN=TGAG|conservative_inframe_insertion|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.2822_2824dupCTC|p.Thr941_His942insPro|2824/4218|2824/4218|942/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,5:6:41:279,0,41	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	164675	.	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-0.409;SOR=1.492;ANN=C|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.2665A>G|p.Ile889Val|2665/4218|2665/4218|889/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,4:12:99:100,0,217	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	165125	.	A	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.67;MQ0=2;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.029;SOR=1.034;ANN=T|stop_lost|HIGH|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.2215T>A|p.Ter739Lysext*?|2215/4218|2215/4218|739/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,3:10:69:69,0,151	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	165146	.	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.40;ReadPosRankSum=1.465;SOR=0.446;ANN=T|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.2194C>A|p.Gln732Lys|2194/4218|2194/4218|732/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,2:7:66:66,0,149	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	165990	.	T	G	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.04;ReadPosRankSum=1.631;SOR=1.002;ANN=G|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.1350A>C|p.Thr450Thr|1350/4218|1350/4218|450/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,8:21:99:281,0,335	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	166368	.	T	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-0.861;SOR=0.340;ANN=G|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.972A>C|p.Ala324Ala|972/4218|972/4218|324/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:390,0,482	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	166643	.	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.95;ReadPosRankSum=-0.180;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.697G>A|p.Ala233Thr|697/4218|697/4218|233/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:391,0,325	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	166662	.	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-0.415;SOR=0.765;ANN=T|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.678G>A|p.Met226Ile|678/4218|678/4218|226/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:367,0,324	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	167060	.	T	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.400;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-0.886;SOR=0.790;ANN=C|missense_variant|MODERATE|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.280A>G|p.Ile94Val|280/4218|280/4218|94/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:486,0,332	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	167067	.	T	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.815;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.24;ReadPosRankSum=-0.928;SOR=1.034;ANN=C|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.273A>G|p.Leu91Leu|273/4218|273/4218|91/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:481,0,413	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	167130	.	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.000;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.210T>C|p.Val70Val|210/4218|210/4218|70/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,8:26:99:189,0,452	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143731_cov64	167292	.	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=1.822;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold143731_cov64_163122_167339|GENE_EXON_scaffold143731_cov64_163122_167339|transcript|Soaet10008293|protein_coding|1/1|c.48A>G|p.Glu16Glu|48/4218|48/4218|16/1405||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,8:18:99:222,0,206	scaffold143731_cov64	GLEAN	mRNA	163122	167339	0.97	-	.	ID=Soaet10008293
scaffold143745_cov62	27151	.	T	C	725.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.91;SOR=0.846;ANN=C|intron_variant|MODIFIER|EXON_scaffold143745_cov62_26303_26480|GENE_EXON_scaffold143745_cov62_26303_26480|transcript|Soaet10008805|protein_coding|2/4|c.209+232A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:54:754,54,0	scaffold143745_cov62	GLEAN	mRNA	26303	27678	0.93	-	.	ID=Soaet10008805
scaffold143745_cov62	218470	.	G	C	648.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.15;SOR=0.793;ANN=C|missense_variant|MODERATE|EXON_scaffold143745_cov62_218425_218598|GENE_EXON_scaffold143745_cov62_218425_218598|transcript|Soaet10008807|protein_coding|1/1|c.129C>G|p.Ile43Met|129/174|129/174|43/57||	GT:AD:DP:GQ:PL	1/1:0,19:19:48:677,48,0	scaffold143745_cov62	GLEAN	mRNA	218425	218598	0.97	-	.	ID=Soaet10008807
scaffold144779_cov63	21505	.	T	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=6.3596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.82;ReadPosRankSum=-0.609;SOR=1.445;ANN=A|missense_variant|MODERATE|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|9/9|c.2081A>T|p.Asn694Ile|2081/2337|2081/2337|694/778||	GT:AD:DP:GQ:PL	0/1:6,12:18:97:349,0,97	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	22400	.	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.718;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.674;SOR=1.244;ANN=C|missense_variant|MODERATE|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|8/9|c.1330A>G|p.Arg444Gly|1330/2337|1330/2337|444/778||	GT:AD:DP:GQ:PL	0/1:10,14:25:99:431,0,266	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	22598	.	A	C	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.819;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-1.047;SOR=0.328;ANN=C|missense_variant|MODERATE|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|8/9|c.1132T>G|p.Ser378Ala|1132/2337|1132/2337|378/778||	GT:AD:DP:GQ:PL	0/1:18,25:43:99:631,0,560	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	23047	.	G	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.561;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-1.128;SOR=2.276;ANN=C|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|6/8|c.970-223C>G||||||	GT:AD:DP:GQ:PL	0/1:11,10:21:99:311,0,311	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	23616	.	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-0.378;SOR=0.678;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|5/8|c.711-30C>T||||||	GT:AD:DP:GQ:PL	0/1:20,22:42:99:540,0,550	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	24523	.	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.964;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-2.436;SOR=0.119;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-495C>T||||||	GT:AD:DP:GQ:PL	0/1:9,11:20:99:344,0,299	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26160	.	C	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;DP=31;Dels=0.00;ExcessHet=3.0103;FS=12.067;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=-4.483;QD=5.57;ReadPosRankSum=-1.764;SOR=3.932;ANN=G|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2132G>C||||||	GT:AD:DP:GQ:PL	0/1:23,8:31:99:201,0,674	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26164	.	A	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DP=32;Dels=0.00;ExcessHet=3.0103;FS=15.862;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=0;MQRankSum=-3.910;QD=5.31;ReadPosRankSum=-1.079;SOR=4.804;ANN=T|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2136T>A||||||	GT:AD:DP:GQ:PL	0/1:22,10:32:99:198,0,721	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26166	.	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DP=32;Dels=0.00;ExcessHet=3.0103;FS=10.335;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=0;MQRankSum=-4.299;QD=5.37;ReadPosRankSum=-1.345;SOR=3.258;ANN=T|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2138G>A||||||	GT:AD:DP:GQ:PL	0/1:22,10:32:99:200,0,703	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26179	.	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.245;HaplotypeScore=3.8722;MLEAC=1;MLEAF=0.500;MQ=55.60;MQ0=0;MQRankSum=-4.794;QD=5.39;ReadPosRankSum=-0.727;SOR=2.494;ANN=C|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2151A>G||||||	GT:AD:DP:GQ:PL	0/1:22,11:33:99:206,0,691	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26190	.	G	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.561;HaplotypeScore=5.7039;MLEAC=1;MLEAF=0.500;MQ=53.93;MQ0=0;MQRankSum=-4.809;QD=5.78;ReadPosRankSum=0.074;SOR=2.147;ANN=T|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2162C>A||||||	GT:AD:DP:GQ:PL	0/1:20,13:33:99:219,0,588	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26194	.	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.525;HaplotypeScore=4.6626;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=0;MQRankSum=-4.904;QD=5.61;ReadPosRankSum=0.781;SOR=2.129;ANN=T|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2166G>A||||||	GT:AD:DP:GQ:PL	0/1:21,13:34:99:219,0,603	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26205	.	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=52.63;MQ0=0;MQRankSum=-4.880;QD=5.73;ReadPosRankSum=1.007;SOR=1.432;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2177C>T||||||	GT:AD:DP:GQ:PL	0/1:19,15:34:99:223,0,546	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26216	.	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-4.611;QD=4.82;ReadPosRankSum=2.014;SOR=0.988;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2188C>T||||||	GT:AD:DP:GQ:PL	0/1:19,15:35:99:192,0,488	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26223	.	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-4.994;QD=4.42;ReadPosRankSum=2.190;SOR=1.204;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2195C>T||||||	GT:AD:DP:GQ:PL	0/1:21,14:35:99:183,0,592	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26224	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-4.994;QD=4.51;ReadPosRankSum=2.157;SOR=1.204;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2196C>T||||||	GT:AD:DP:GQ:PL	0/1:21,14:35:99:186,0,563	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26234	.	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-4.994;QD=4.51;ReadPosRankSum=2.410;SOR=1.204;ANN=C|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2206A>G||||||	GT:AD:DP:GQ:PL	0/1:21,14:35:99:186,0,578	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26241	.	A	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=53.75;MQ0=0;MQRankSum=-4.716;QD=5.34;ReadPosRankSum=1.894;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2213T>G||||||	GT:AD:DP:GQ:PL	0/1:22,16:39:99:231,0,521	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26275	.	T	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=54.33;MQ0=0;MQRankSum=-5.132;QD=5.13;ReadPosRankSum=0.038;SOR=0.627;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.432-2247A>T||||||	GT:AD:DP:GQ:PL	0/1:27,16:43:99:249,0,724	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26534	.	A	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.725;SOR=0.971;ANN=G|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.431+2270T>C||||||	GT:AD:DP:GQ:PL	0/1:11,13:24:99:291,0,334	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26569	.	T	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.21;ReadPosRankSum=0.222;SOR=0.694;ANN=G|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.431+2235A>C||||||	GT:AD:DP:GQ:PL	0/1:16,11:27:99:250,0,380	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26930	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.431+1874T>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	26966	.	C	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.431+1838G>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	27597	.	T	TC	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.43;ReadPosRankSum=0.709;SOR=1.802;ANN=TC|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.431+1206_431+1207insG||||||	GT:AD:DP:GQ:PL	0/1:5,6:11:99:218,0,194	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	27644	.	G	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.605;QD=10.62;ReadPosRankSum=-1.248;SOR=0.446;ANN=C|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.431+1160C>G||||||	GT:AD:DP:GQ:PL	0/1:5,6:11:99:145,0,108	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	28334	.	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;DP=9;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.242;SOR=0.959;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_21249_22085|GENE_EXON_scaffold144779_cov63_21249_22085|transcript|Soaet10009003|protein_coding|3/8|c.431+470A>T||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:60:60,0,182	scaffold144779_cov63	GLEAN	mRNA	21249	30180	0.45	-	.	ID=Soaet10009003
scaffold144779_cov63	95506	.	AG	A	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DP=17;ExcessHet=3.0103;FS=5.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.98;RPA=4,3;RU=G;ReadPosRankSum=0.049;SOR=0.078;STR;ANN=A|frameshift_variant|HIGH|EXON_scaffold144779_cov63_95399_95529|GENE_EXON_scaffold144779_cov63_95399_95529|transcript|Soaet10009004|protein_coding|4/4|c.153delC|p.Tyr52fs|153/261|153/261|51/86||;LOF=(EXON_scaffold144779_cov63_95399_95529|GENE_EXON_scaffold144779_cov63_95399_95529|1|1.00)	GT:AD:DP:GQ:PL	0/1:7,10:17:99:343,0,225	scaffold144779_cov63	GLEAN	mRNA	95399	96166	0.45	-	.	ID=Soaet10009004
scaffold144779_cov63	95513	.	A	C	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=20;Dels=0.00;ExcessHet=3.0103;FS=8.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.757;SOR=0.039;ANN=C|synonymous_variant|LOW|EXON_scaffold144779_cov63_95399_95529|GENE_EXON_scaffold144779_cov63_95399_95529|transcript|Soaet10009004|protein_coding|4/4|c.147T>G|p.Thr49Thr|147/261|147/261|49/86||	GT:AD:DP:GQ:PL	0/1:10,10:20:99:248,0,326	scaffold144779_cov63	GLEAN	mRNA	95399	96166	0.45	-	.	ID=Soaet10009004
scaffold144779_cov63	95702	.	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.07;ReadPosRankSum=2.051;SOR=0.943;ANN=T|intron_variant|MODIFIER|EXON_scaffold144779_cov63_95399_95529|GENE_EXON_scaffold144779_cov63_95399_95529|transcript|Soaet10009004|protein_coding|2/3|c.103-53G>A||||||	GT:AD:DP:GQ:PL	0/1:15,12:27:99:327,0,446	scaffold144779_cov63	GLEAN	mRNA	95399	96166	0.45	-	.	ID=Soaet10009004
scaffold144779_cov63	102039	.	G	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.32;ReadPosRankSum=-0.641;SOR=1.112;ANN=A|synonymous_variant|LOW|EXON_scaffold144779_cov63_101991_102138|GENE_EXON_scaffold144779_cov63_101991_102138|transcript|Soaet10009005|protein_coding|7/7|c.474C>T|p.Ser158Ser|474/522|474/522|158/173||	GT:AD:DP:GQ:PL	0/1:9,12:21:99:329,0,244	scaffold144779_cov63	GLEAN	mRNA	101991	103691	0.18	-	.	ID=Soaet10009005
scaffold144779_cov63	102422	.	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=1;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.109;SOR=0.394;ANN=G|intron_variant|MODIFIER|EXON_scaffold144779_cov63_101991_102138|GENE_EXON_scaffold144779_cov63_101991_102138|transcript|Soaet10009005|protein_coding|5/6|c.303+38T>C||||||	GT:AD:DP:GQ:PL	0/1:15,15:31:99:372,0,503	scaffold144779_cov63	GLEAN	mRNA	101991	103691	0.18	-	.	ID=Soaet10009005
scaffold144779_cov63	102839	.	A	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.465;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.134;SOR=0.399;ANN=G|missense_variant|MODERATE|EXON_scaffold144779_cov63_101991_102138|GENE_EXON_scaffold144779_cov63_101991_102138|transcript|Soaet10009005|protein_coding|4/7|c.221T>C|p.Val74Ala|221/522|221/522|74/173||	GT:AD:DP:GQ:PL	0/1:22,11:33:99:226,0,570	scaffold144779_cov63	GLEAN	mRNA	101991	103691	0.18	-	.	ID=Soaet10009005
scaffold144779_cov63	102886	.	A	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.949;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.440;SOR=0.188;ANN=G|intron_variant|MODIFIER|EXON_scaffold144779_cov63_101991_102138|GENE_EXON_scaffold144779_cov63_101991_102138|transcript|Soaet10009005|protein_coding|3/6|c.218-44T>C||||||	GT:AD:DP:GQ:PL	0/1:14,10:24:99:275,0,408	scaffold144779_cov63	GLEAN	mRNA	101991	103691	0.18	-	.	ID=Soaet10009005
scaffold144779_cov63	103266	.	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.722;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.49;ReadPosRankSum=1.248;SOR=1.770;ANN=A|missense_variant&splice_region_variant|MODERATE|EXON_scaffold144779_cov63_101991_102138|GENE_EXON_scaffold144779_cov63_101991_102138|transcript|Soaet10009005|protein_coding|3/7|c.215C>T|p.Pro72Leu|215/522|215/522|72/173||	GT:AD:DP:GQ:PL	0/1:17,11:28:99:266,0,515	scaffold144779_cov63	GLEAN	mRNA	101991	103691	0.18	-	.	ID=Soaet10009005
scaffold144779_cov63	103472	.	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.592;SOR=0.711;ANN=G|intron_variant|MODIFIER|EXON_scaffold144779_cov63_101991_102138|GENE_EXON_scaffold144779_cov63_101991_102138|transcript|Soaet10009005|protein_coding|2/6|c.109+36T>C||||||	GT:AD:DP:GQ:PL	0/1:16,11:27:99:313,0,509	scaffold144779_cov63	GLEAN	mRNA	101991	103691	0.18	-	.	ID=Soaet10009005
scaffold144779_cov63	103634	.	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=1.180;QD=11.90;ReadPosRankSum=0.657;SOR=0.734;ANN=A|intron_variant|MODIFIER|EXON_scaffold144779_cov63_101991_102138|GENE_EXON_scaffold144779_cov63_101991_102138|transcript|Soaet10009005|protein_coding|1/6|c.36+22C>T||||||	GT:AD:DP:GQ:PL	0/1:18,23:42:99:516,0,491	scaffold144779_cov63	GLEAN	mRNA	101991	103691	0.18	-	.	ID=Soaet10009005
scaffold144779_cov63	110334	.	C	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.17;ReadPosRankSum=0.204;SOR=0.368;ANN=G|missense_variant|MODERATE|EXON_scaffold144779_cov63_109622_109690|GENE_EXON_scaffold144779_cov63_109622_109690|transcript|Soaet10009006|protein_coding|3/6|c.1822G>C|p.Val608Leu|1822/2292|1822/2292|608/763||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:223,0,186	scaffold144779_cov63	GLEAN	mRNA	109622	112464	0.76	-	.	ID=Soaet10009006
scaffold144779_cov63	112053	.	G	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.027;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-1.614;SOR=1.329;ANN=T|missense_variant|MODERATE|EXON_scaffold144779_cov63_109622_109690|GENE_EXON_scaffold144779_cov63_109622_109690|transcript|Soaet10009006|protein_coding|1/6|c.412C>A|p.Gln138Lys|412/2292|412/2292|138/763||	GT:AD:DP:GQ:PL	0/1:8,6:15:99:208,0,259	scaffold144779_cov63	GLEAN	mRNA	109622	112464	0.76	-	.	ID=Soaet10009006
scaffold148511_cov63	23168	.	A	G	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=31;Dels=0.03;ExcessHet=3.0103;FS=9.748;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=42.92;MQ0=4;MQRankSum=-3.155;QD=0.46;ReadPosRankSum=1.981;SOR=3.252;ANN=G|synonymous_variant|LOW|EXON_scaffold148511_cov63_21896_25063|GENE_EXON_scaffold148511_cov63_21896_25063|transcript|Soaet10008699|protein_coding|1/1|c.1896T>C|p.Phe632Phe|1896/3168|1896/3168|632/1055||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold148511_cov63_27485_27718|GENE_EXON_scaffold148511_cov63_27485_27718|transcript|Soaet10008700|protein_coding||c.*4317T>C|||||4317|	GT:AD:DP:GQ:PL	0/1:23,7:30:42:42,0,692	scaffold148511_cov63	GLEAN	mRNA	21896	25063	0.86	-	.	ID=Soaet10008699
scaffold148511_cov63	23656	.	A	G	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.682;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=48.78;MQ0=3;MQRankSum=-3.255;QD=0.78;ReadPosRankSum=-0.630;SOR=2.093;ANN=G|missense_variant|MODERATE|EXON_scaffold148511_cov63_21896_25063|GENE_EXON_scaffold148511_cov63_21896_25063|transcript|Soaet10008699|protein_coding|1/1|c.1408T>C|p.Tyr470His|1408/3168|1408/3168|470/1055||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold148511_cov63_27485_27718|GENE_EXON_scaffold148511_cov63_27485_27718|transcript|Soaet10008700|protein_coding||c.*3829T>C|||||3829|	GT:AD:DP:GQ:PL	0/1:21,7:29:50:50,0,621	scaffold148511_cov63	GLEAN	mRNA	21896	25063	0.86	-	.	ID=Soaet10008699
scaffold148511_cov63	24854	.	T	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=0;MQRankSum=-2.108;QD=24.52;ReadPosRankSum=1.692;SOR=1.473;ANN=G|synonymous_variant|LOW|EXON_scaffold148511_cov63_21896_25063|GENE_EXON_scaffold148511_cov63_21896_25063|transcript|Soaet10008699|protein_coding|1/1|c.210A>C|p.Gly70Gly|210/3168|210/3168|70/1055||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold148511_cov63_27485_27718|GENE_EXON_scaffold148511_cov63_27485_27718|transcript|Soaet10008700|protein_coding||c.*2631A>C|||||2631|	GT:AD:DP:GQ:PL	0/1:2,11:14:49:347,0,49	scaffold148511_cov63	GLEAN	mRNA	21896	25063	0.86	-	.	ID=Soaet10008699
scaffold148511_cov63	24913	.	C	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4868;MLEAC=1;MLEAF=0.500;MQ=49.63;MQ0=0;MQRankSum=-0.789;QD=3.17;ReadPosRankSum=-0.869;SOR=0.269;ANN=A|missense_variant|MODERATE|EXON_scaffold148511_cov63_21896_25063|GENE_EXON_scaffold148511_cov63_21896_25063|transcript|Soaet10008699|protein_coding|1/1|c.151G>T|p.Gly51Cys|151/3168|151/3168|51/1055||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold148511_cov63_27485_27718|GENE_EXON_scaffold148511_cov63_27485_27718|transcript|Soaet10008700|protein_coding||c.*2572G>T|||||2572|	GT:AD:DP:GQ:PL	0/1:22,6:28:99:117,0,578	scaffold148511_cov63	GLEAN	mRNA	21896	25063	0.86	-	.	ID=Soaet10008699
scaffold148511_cov63	24962	.	A	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.911;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.93;MQ0=0;MQRankSum=-0.387;QD=4.76;ReadPosRankSum=-0.777;SOR=0.321;ANN=T|synonymous_variant|LOW|EXON_scaffold148511_cov63_21896_25063|GENE_EXON_scaffold148511_cov63_21896_25063|transcript|Soaet10008699|protein_coding|1/1|c.102T>A|p.Ala34Ala|102/3168|102/3168|34/1055||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold148511_cov63_27485_27718|GENE_EXON_scaffold148511_cov63_27485_27718|transcript|Soaet10008700|protein_coding||c.*2523T>A|||||2523|	GT:AD:DP:GQ:PL	0/1:32,14:46:99:247,0,847	scaffold148511_cov63	GLEAN	mRNA	21896	25063	0.86	-	.	ID=Soaet10008699
scaffold148511_cov63	25007	.	A	C	1243.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-0.234;QD=27.64;ReadPosRankSum=-0.939;SOR=0.538;ANN=C|missense_variant|MODERATE|EXON_scaffold148511_cov63_21896_25063|GENE_EXON_scaffold148511_cov63_21896_25063|transcript|Soaet10008699|protein_coding|1/1|c.57T>G|p.Ile19Met|57/3168|57/3168|19/1055||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold148511_cov63_27485_27718|GENE_EXON_scaffold148511_cov63_27485_27718|transcript|Soaet10008700|protein_coding||c.*2478T>G|||||2478|	GT:AD:DP:GQ:PL	0/1:4,41:45:19:1272,0,19	scaffold148511_cov63	GLEAN	mRNA	21896	25063	0.86	-	.	ID=Soaet10008699
scaffold148511_cov63	25056	.	A	C	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=-1.244;QD=22.59;ReadPosRankSum=0.600;SOR=0.762;ANN=C|missense_variant|MODERATE|EXON_scaffold148511_cov63_21896_25063|GENE_EXON_scaffold148511_cov63_21896_25063|transcript|Soaet10008699|protein_coding|1/1|c.8T>G|p.Ile3Arg|8/3168|8/3168|3/1055||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold148511_cov63_27485_27718|GENE_EXON_scaffold148511_cov63_27485_27718|transcript|Soaet10008700|protein_coding||c.*2429T>G|||||2429|	GT:AD:DP:GQ:PL	0/1:8,58:66:99:1519,0,123	scaffold148511_cov63	GLEAN	mRNA	21896	25063	0.86	-	.	ID=Soaet10008699
scaffold149008_cov62	109049	.	A	G	391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=35;MQRankSum=3.927;QD=7.39;ReadPosRankSum=-2.191;SOR=1.802;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|1/8|c.282+254A>G||||||	GT:AD:DP:GQ:PL	1/1:41,12:54:30:420,30,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	109173	.	T	G	846.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.87;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|1/8|c.282+378T>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:63:875,63,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	110373	.	A	G	702.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.94;SOR=0.874;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|2/8|c.546+144A>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:731,51,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	110374	.	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.73;ReadPosRankSum=2.052;SOR=0.784;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|2/8|c.546+145G>A||||||	GT:AD:DP:GQ:PL	0/1:18,5:23:99:160,0,471	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	110410	.	G	C	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.96;ReadPosRankSum=0.717;SOR=0.733;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|2/8|c.546+181G>C||||||	GT:AD:DP:GQ:PL	0/1:7,21:28:99:503,0,162	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	110932	.	G	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.65;ReadPosRankSum=0.455;SOR=1.416;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|2/8|c.547-236G>T||||||	GT:AD:DP:GQ:PL	0/1:14,21:35:99:681,0,339	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	111768	.	T	C	907.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.26;SOR=0.826;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|3/8|c.896+251T>C||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:69:936,69,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	112653	.	G	T	765.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.45;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-4277G>T|||||4277|,T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|5/8|c.1088+70G>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:794,60,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	113072	.	T	G	1198.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.25;SOR=1.308;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-3858T>G|||||3858|,G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|6/8|c.1253+133T>G||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1227,87,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	113978	.	C	T	523.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SOR=0.990;ANN=T|missense_variant|MODERATE|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|8/9|c.1471C>T|p.Pro491Ser|1471/2001|1471/2001|491/666||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-2952C>T|||||2952|	GT:AD:DP:GQ:PL	1/1:0,21:21:39:552,39,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	114026	.	G	T	475.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SOR=1.493;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|8/8|c.1511+8G>T||||||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-2904G>T|||||2904|	GT:AD:DP:GQ:PL	1/1:0,18:18:36:504,36,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	114089	.	A	G	226.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.3997;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-0.126;QD=22.65;ReadPosRankSum=-1.036;SOR=0.569;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-2841A>G|||||2841|,G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|8/8|c.1511+71A>G||||||	GT:AD:DP:GQ:PL	0/1:1,9:10:3:253,0,3	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	114158	.	T	G	176.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.21;SOR=1.981;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-2772T>G|||||2772|,G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|8/8|c.1511+140T>G||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	114551	.	G	T	675.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.16;SOR=0.859;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-2379G>T|||||2379|,T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|8/8|c.1511+533G>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:51:704,51,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	114568	.	A	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.61;ReadPosRankSum=-0.594;SOR=0.657;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-2362A>T|||||2362|,T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|8/8|c.1511+550A>T||||||	GT:AD:DP:GQ:PL	0/1:9,17:27:99:460,0,168	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	114768	.	T	A	436.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.60;SOR=1.179;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding||c.-2162T>A|||||2162|,A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding|8/8|c.1512-539T>A||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:33:465,33,0	scaffold149008_cov62	GLEAN	mRNA	108514	115796	0.09	+	.	ID=Soaet10009238
scaffold149008_cov62	117045	.	G	C	435.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.05;SOR=0.818;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding||c.*1249G>C|||||1249|,C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|1/11|c.105+11G>C||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:464,33,0	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	117450	.	A	G	701.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SOR=1.721;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding||c.*1654A>G|||||1654|,G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|1/11|c.105+416A>G||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:54:730,54,0	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	118386	.	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.85;ReadPosRankSum=0.761;SOR=0.215;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding||c.*2590G>A|||||2590|,A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|2/11|c.207+244G>A||||||	GT:AD:DP:GQ:PL	0/1:8,13:21:99:403,0,207	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	118417	.	C	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.589;SOR=1.402;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding||c.*2621C>G|||||2621|,G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|2/11|c.207+275C>G||||||	GT:AD:DP:GQ:PL	0/1:13,10:23:99:267,0,445	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	118778	.	C	CA	1416.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=22.69;SOR=0.818;ANN=CA|downstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding||c.*2982_*2983insA|||||2983|,CA|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|2/11|c.208-119_208-118insA||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1454,96,0	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	119062	.	A	G	814.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.34;SOR=1.220;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding||c.*3266A>G|||||3266|,G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|3/11|c.259-102A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:843,60,0	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	119658	.	T	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.49;ReadPosRankSum=1.780;SOR=1.802;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149008_cov62_108514_108795|GENE_EXON_scaffold149008_cov62_108514_108795|transcript|Soaet10009238|protein_coding||c.*3862T>A|||||3862|,A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|5/11|c.541+54T>A||||||	GT:AD:DP:GQ:PL	0/1:12,6:18:99:181,0,258	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	121000	.	C	T	477.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.86;ReadPosRankSum=-0.869;SOR=0.610;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|9/11|c.927-102C>T||||||	GT:AD:DP:GQ:PL	1/1:1,15:16:36:506,36,0	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	121375	.	C	T	877.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=1.136;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|10/11|c.1152+48C>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:66:906,66,0	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	121393	.	G	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.442;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-0.805;SOR=0.505;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|10/11|c.1153-48G>T||||||	GT:AD:DP:GQ:PL	0/1:11,15:26:99:457,0,339	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	121964	.	A	G	1333.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=34.20;SOR=1.096;ANN=G|synonymous_variant|LOW|EXON_scaffold149008_cov62_116930_117034|GENE_EXON_scaffold149008_cov62_116930_117034|transcript|Soaet10009239|protein_coding|12/12|c.1374A>G|p.Lys458Lys|1374/1635|1374/1635|458/544||	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1362,99,0	scaffold149008_cov62	GLEAN	mRNA	116930	122225	0.61	+	.	ID=Soaet10009239
scaffold149008_cov62	162008	.	CA	C	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.34;RPA=5,4;RU=A;ReadPosRankSum=-0.236;SOR=0.559;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_160133_160408|GENE_EXON_scaffold149008_cov62_160133_160408|transcript|Soaet10009240|protein_coding|3/5|c.641+16delT||||||	GT:AD:DP:GQ:PL	0/1:12,26:40:99:886,0,322	scaffold149008_cov62	GLEAN	mRNA	160133	162925	0.79	-	.	ID=Soaet10009240
scaffold149008_cov62	199087	.	A	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.761;QD=16.99;ReadPosRankSum=-1.055;SOR=0.883;ANN=G|missense_variant|MODERATE|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|2/2|c.235T>C|p.Tyr79His|235/366|235/366|79/121||	GT:AD:DP:GQ:PL	0/1:10,14:24:99:436,0,317	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	199132	.	T	C	650.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.54;SOR=1.127;ANN=C|missense_variant|MODERATE|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|2/2|c.190A>G|p.Asn64Asp|190/366|190/366|64/121||	GT:AD:DP:GQ:PL	1/1:0,20:20:48:679,48,0	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	200255	.	G	A	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=6;MQRankSum=-3.833;QD=0.58;ReadPosRankSum=0.466;SOR=0.882;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-1079C>T||||||	GT:AD:DP:GQ:PL	0/1:23,13:37:49:49,0,759	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	200300	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=48.87;MQ0=6;MQRankSum=-4.281;QD=0.56;ReadPosRankSum=1.300;SOR=0.869;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-1124C>T||||||	GT:AD:DP:GQ:PL	0/1:31,13:44:53:53,0,883	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	200543	.	G	A	755.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=27.99;SOR=1.101;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-1367C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:57:784,57,0	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201094	.	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=23;Dels=0.00;ExcessHet=3.0103;FS=6.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=1.044;QD=12.77;ReadPosRankSum=-0.677;SOR=1.054;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-1918C>T||||||	GT:AD:DP:GQ:PL	0/1:12,11:23:99:322,0,361	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201274	.	G	A	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.053;HaplotypeScore=3.7692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-1.234;SOR=0.883;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-2098C>T||||||	GT:AD:DP:GQ:PL	0/1:25,12:37:99:334,0,593	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201580	.	G	A	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;DP=21;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.87;MQ0=0;MQRankSum=-4.374;QD=0.99;ReadPosRankSum=-0.151;SOR=2.800;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-2404C>T||||||	GT:AD:DP:GQ:PL	0/1:18,3:21:49:49,0,572	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201685	.	T	C	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=-5.018;QD=0.62;ReadPosRankSum=-1.389;SOR=0.631;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-2509A>G||||||	GT:AD:DP:GQ:PL	0/1:24,3:27:45:45,0,652	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201687	.	A	G	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-4.340;QD=0.40;ReadPosRankSum=-1.937;SOR=0.330;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-2511T>C||||||	GT:AD:DP:GQ:PL	0/1:24,4:28:39:39,0,652	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201698	.	G	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-5.123;QD=2.03;ReadPosRankSum=-2.660;SOR=1.148;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.146-2522C>G||||||	GT:AD:DP:GQ:PL	0/1:24,4:28:85:85,0,629	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201722	.	G	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-4.428;QD=1.23;ReadPosRankSum=-1.138;SOR=1.270;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2536C>G||||||	GT:AD:DP:GQ:PL	0/1:25,4:29:64:64,0,671	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201776	.	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=-3.308;QD=5.71;ReadPosRankSum=-1.192;SOR=0.684;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2482C>T||||||	GT:AD:DP:GQ:PL	0/1:26,13:39:99:251,0,724	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201793	.	C	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-3.180;QD=5.69;ReadPosRankSum=0.404;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2465G>C||||||	GT:AD:DP:GQ:PL	0/1:30,16:46:99:290,0,876	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201800	.	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=-3.226;QD=6.26;ReadPosRankSum=1.168;SOR=0.629;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2458G>A||||||	GT:AD:DP:GQ:PL	0/1:33,17:50:99:341,0,873	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201828	.	C	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-2.090;QD=7.64;ReadPosRankSum=0.629;SOR=0.388;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2430G>T||||||	GT:AD:DP:GQ:PL	0/1:29,21:50:99:410,0,827	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201856	.	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.098;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=-2.421;QD=8.04;ReadPosRankSum=1.266;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2402C>T||||||	GT:AD:DP:GQ:PL	0/1:28,20:48:99:414,0,829	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201871	.	C	T	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=-2.277;QD=8.63;ReadPosRankSum=-0.064;SOR=0.663;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2387G>A||||||	GT:AD:DP:GQ:PL	0/1:26,21:47:99:434,0,768	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201933	.	A	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQ0=0;MQRankSum=-3.150;QD=6.00;ReadPosRankSum=0.999;SOR=1.051;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2325T>A||||||	GT:AD:DP:GQ:PL	0/1:35,13:48:99:316,0,952	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201969	.	C	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.441;HaplotypeScore=2.8309;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-4.326;QD=5.76;ReadPosRankSum=1.061;SOR=1.390;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2289G>C||||||	GT:AD:DP:GQ:PL	0/1:28,10:38:99:247,0,795	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	201972	.	A	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.622;HaplotypeScore=3.7468;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-4.326;QD=5.89;ReadPosRankSum=1.111;SOR=1.390;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2286T>A||||||	GT:AD:DP:GQ:PL	0/1:28,10:38:99:252,0,821	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202009	.	T	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DP=49;Dels=0.02;ExcessHet=3.0103;FS=6.465;HaplotypeScore=7.4283;MLEAC=1;MLEAF=0.500;MQ=56.81;MQ0=0;MQRankSum=-4.899;QD=7.70;ReadPosRankSum=-0.620;SOR=1.739;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2249A>T||||||	GT:AD:DP:GQ:PL	0/1:30,17:48:99:390,0,864	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202010	.	T	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;DP=49;Dels=0.02;ExcessHet=3.0103;FS=4.546;HaplotypeScore=7.4283;MLEAC=1;MLEAF=0.500;MQ=56.81;MQ0=0;MQRankSum=-4.899;QD=8.04;ReadPosRankSum=-0.731;SOR=1.739;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2248A>T||||||	GT:AD:DP:GQ:PL	0/1:30,17:48:99:406,0,885	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202021	.	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.073;HaplotypeScore=5.5767;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=-4.851;QD=8.31;ReadPosRankSum=0.441;SOR=1.333;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2237A>G||||||	GT:AD:DP:GQ:PL	0/1:36,18:54:99:477,0,1004	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202039	.	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.124;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-4.789;QD=8.11;ReadPosRankSum=0.658;SOR=0.965;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2219G>A||||||	GT:AD:DP:GQ:PL	0/1:35,18:53:99:458,0,934	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202070	.	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.145;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=57.15;MQ0=0;MQRankSum=-4.017;QD=9.92;ReadPosRankSum=0.947;SOR=1.436;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2188G>T||||||	GT:AD:DP:GQ:PL	0/1:34,19:53:99:554,0,915	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202085	.	T	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.555;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-3.257;QD=9.58;ReadPosRankSum=0.263;SOR=1.292;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2173A>G||||||	GT:AD:DP:GQ:PL	0/1:32,19:51:99:517,0,875	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202086	.	C	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-3.205;QD=9.56;ReadPosRankSum=0.080;SOR=1.206;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2172G>A||||||	GT:AD:DP:GQ:PL	0/1:31,19:51:99:506,0,886	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202126	.	G	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-1.805;QD=13.17;ReadPosRankSum=-1.082;SOR=0.473;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2132C>T||||||	GT:AD:DP:GQ:PL	0/1:30,28:58:99:792,0,884	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202157	.	C	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.410;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.24;ReadPosRankSum=1.769;SOR=0.921;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2101G>T||||||	GT:AD:DP:GQ:PL	0/1:34,28:62:99:725,0,861	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202167	.	A	G	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.212;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.36;ReadPosRankSum=3.108;SOR=0.916;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2091T>C||||||	GT:AD:DP:GQ:PL	0/1:35,26:61:99:660,0,970	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202194	.	T	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.466;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-1.887;QD=11.58;ReadPosRankSum=1.125;SOR=1.000;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2064A>G||||||	GT:AD:DP:GQ:PL	0/1:34,29:63:99:758,0,965	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202218	.	G	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.293;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.898;QD=12.15;ReadPosRankSum=-0.898;SOR=1.244;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2040C>T||||||	GT:AD:DP:GQ:PL	0/1:32,27:59:99:745,0,881	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202238	.	G	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.640;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-2.005;QD=10.27;ReadPosRankSum=-2.175;SOR=1.281;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2020C>T||||||	GT:AD:DP:GQ:PL	0/1:33,25:58:99:624,0,966	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202241	.	G	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=58;Dels=0.00;ExcessHet=3.0103;FS=7.156;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-2.427;QD=10.05;ReadPosRankSum=-1.824;SOR=1.163;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2017C>T||||||	GT:AD:DP:GQ:PL	0/1:34,24:58:99:611,0,1029	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202249	.	G	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;DP=61;Dels=0.00;ExcessHet=3.0103;FS=7.060;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-3.119;QD=11.26;ReadPosRankSum=-1.230;SOR=1.168;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+2009C>A||||||	GT:AD:DP:GQ:PL	0/1:36,24:61:99:704,0,1102	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202288	.	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.732;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-4.121;QD=7.48;ReadPosRankSum=1.135;SOR=0.837;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1970G>A||||||	GT:AD:DP:GQ:PL	0/1:36,14:50:99:402,0,1207	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202290	.	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.337;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-4.462;QD=6.22;ReadPosRankSum=1.977;SOR=0.354;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1968C>T||||||	GT:AD:DP:GQ:PL	0/1:36,12:49:99:327,0,1018	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202293	.	T	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.855;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=-4.793;QD=5.98;ReadPosRankSum=1.611;SOR=0.560;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1965A>G||||||	GT:AD:DP:GQ:PL	0/1:38,13:51:99:333,0,1067	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202300	.	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.886;HaplotypeScore=8.3186;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-4.676;QD=6.34;ReadPosRankSum=1.382;SOR=0.549;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1958G>A||||||	GT:AD:DP:GQ:PL	0/1:36,13:49:99:339,0,1155	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202352	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.185;HaplotypeScore=10.2318;MLEAC=1;MLEAF=0.500;MQ=56.57;MQ0=0;MQRankSum=-5.827;QD=5.57;ReadPosRankSum=-2.037;SOR=0.910;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1906G>A||||||	GT:AD:DP:GQ:PL	0/1:35,14:49:99:301,0,1084	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202363	.	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2728;MLEAC=1;MLEAF=0.500;MQ=56.42;MQ0=0;MQRankSum=-5.989;QD=6.82;ReadPosRankSum=-1.666;SOR=0.608;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1895G>A||||||	GT:AD:DP:GQ:PL	0/1:34,13:47:99:349,0,1020	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202379	.	A	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.481;HaplotypeScore=12.4025;MLEAC=1;MLEAF=0.500;MQ=56.17;MQ0=0;MQRankSum=-6.054;QD=4.59;ReadPosRankSum=-0.954;SOR=1.436;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1879T>C||||||	GT:AD:DP:GQ:PL	0/1:34,10:44:99:230,0,996	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202391	.	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=-5.441;QD=3.66;ReadPosRankSum=0.153;SOR=0.826;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1867G>A||||||	GT:AD:DP:GQ:PL	0/1:33,9:42:99:182,0,1108	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202397	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-5.367;QD=3.85;ReadPosRankSum=0.914;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1861C>T||||||	GT:AD:DP:GQ:PL	0/1:32,9:41:99:186,0,1008	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202412	.	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-6.266;QD=3.22;ReadPosRankSum=2.184;SOR=0.813;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1846C>T||||||	GT:AD:DP:GQ:PL	0/1:43,10:54:99:199,0,1361	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202443	.	G	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=56.11;MQ0=0;MQRankSum=-6.190;QD=3.84;ReadPosRankSum=0.514;SOR=0.999;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1815C>A||||||	GT:AD:DP:GQ:PL	0/1:44,15:59:99:255,0,1469	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202460	.	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=-6.247;QD=4.76;ReadPosRankSum=-0.512;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1798C>T||||||	GT:AD:DP:GQ:PL	0/1:43,16:59:99:309,0,1510	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202464	.	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=-6.247;QD=4.95;ReadPosRankSum=-0.495;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1794C>T||||||	GT:AD:DP:GQ:PL	0/1:43,16:59:99:320,0,1458	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202467	.	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=-6.308;QD=4.21;ReadPosRankSum=-0.493;SOR=0.655;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1791C>T||||||	GT:AD:DP:GQ:PL	0/1:44,16:60:99:281,0,1502	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202475	.	T	C	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=-6.128;QD=4.41;ReadPosRankSum=-0.844;SOR=0.737;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1783A>G||||||	GT:AD:DP:GQ:PL	0/1:43,15:58:99:284,0,1430	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202478	.	C	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9124;MLEAC=1;MLEAF=0.500;MQ=56.11;MQ0=0;MQRankSum=-6.190;QD=4.20;ReadPosRankSum=-0.801;SOR=0.698;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1780G>T||||||	GT:AD:DP:GQ:PL	0/1:44,15:59:99:276,0,1511	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202504	.	T	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.153;HaplotypeScore=6.4384;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=-6.444;QD=2.48;ReadPosRankSum=1.487;SOR=0.460;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1754A>G||||||	GT:AD:DP:GQ:PL	0/1:58,14:72:99:207,0,1718	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202537	.	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.053;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=55.82;MQ0=0;MQRankSum=-6.816;QD=2.34;ReadPosRankSum=-0.895;SOR=0.981;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1721G>A||||||	GT:AD:DP:GQ:PL	0/1:62,17:79:99:213,0,1710	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202565	.	A	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=54.23;MQ0=0;MQRankSum=-7.064;QD=2.24;ReadPosRankSum=-1.317;SOR=0.728;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1693T>G||||||	GT:AD:DP:GQ:PL	0/1:51,16:68:99:178,0,1429	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	202573	.	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=54.93;MQ0=0;MQRankSum=-7.550;QD=0.73;ReadPosRankSum=-0.114;SOR=0.715;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1685G>A||||||	GT:AD:DP:GQ:PL	0/1:51,12:63:74:74,0,1432	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	203075	.	G	A	1181.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.467;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8316;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.000;QD=28.82;ReadPosRankSum=1.395;SOR=0.264;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1183C>T||||||	GT:AD:DP:GQ:PL	1/1:1,40:41:51:1210,51,0	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	203215	.	T	C	956.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.490;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.000;QD=28.99;ReadPosRankSum=1.577;SOR=0.829;ANN=C|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+1043A>G||||||	GT:AD:DP:GQ:PL	1/1:1,32:33:36:985,36,0	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	203286	.	G	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-1.517;SOR=0.813;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_198956_199176|GENE_EXON_scaffold149008_cov62_198956_199176|transcript|Soaet10009241|protein_coding|1/1|c.145+972C>T||||||	GT:AD:DP:GQ:PL	0/1:27,9:36:99:253,0,806	scaffold149008_cov62	GLEAN	mRNA	198956	204402	1.00	-	.	ID=Soaet10009241
scaffold149008_cov62	210910	.	A	G	312.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.28;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_210289_210424|GENE_EXON_scaffold149008_cov62_210289_210424|transcript|Soaet10009243|protein_coding|2/6|c.369+195A>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:24:341,24,0	scaffold149008_cov62	GLEAN	mRNA	210289	212601	0.62	+	.	ID=Soaet10009243
scaffold149008_cov62	210922	.	C	T	175.9	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_210289_210424|GENE_EXON_scaffold149008_cov62_210289_210424|transcript|Soaet10009243|protein_coding|2/6|c.369+207C>T||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:15:204,15,0	scaffold149008_cov62	GLEAN	mRNA	210289	212601	0.62	+	.	ID=Soaet10009243
scaffold149008_cov62	211139	.	C	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.64;ReadPosRankSum=1.325;SOR=1.402;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_210289_210424|GENE_EXON_scaffold149008_cov62_210289_210424|transcript|Soaet10009243|protein_coding|2/6|c.370-241C>A||||||	GT:AD:DP:GQ:PL	0/1:14,9:23:99:250,0,342	scaffold149008_cov62	GLEAN	mRNA	210289	212601	0.62	+	.	ID=Soaet10009243
scaffold149008_cov62	211262	.	C	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-1.622;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149008_cov62_210289_210424|GENE_EXON_scaffold149008_cov62_210289_210424|transcript|Soaet10009243|protein_coding|2/6|c.370-118C>A||||||	GT:AD:DP:GQ:PL	0/1:14,12:26:99:216,0,449	scaffold149008_cov62	GLEAN	mRNA	210289	212601	0.62	+	.	ID=Soaet10009243
scaffold149008_cov62	212142	.	A	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=22;Dels=0.00;ExcessHet=3.0103;FS=7.765;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.751;SOR=0.061;ANN=G|synonymous_variant|LOW|EXON_scaffold149008_cov62_210289_210424|GENE_EXON_scaffold149008_cov62_210289_210424|transcript|Soaet10009243|protein_coding|5/7|c.948A>G|p.Arg316Arg|948/1215|948/1215|316/404||	GT:AD:DP:GQ:PL	0/1:8,14:22:99:398,0,238	scaffold149008_cov62	GLEAN	mRNA	210289	212601	0.62	+	.	ID=Soaet10009243
scaffold149008_cov62	262391	.	A	C	1188.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.72;SOR=0.793;ANN=C|stop_gained|HIGH|EXON_scaffold149008_cov62_262367_262485|GENE_EXON_scaffold149008_cov62_262367_262485|transcript|Soaet10009245|protein_coding|3/3|c.159T>G|p.Tyr53*|159/183|159/183|53/60||	GT:AD:DP:GQ:PL	1/1:0,40:40:87:1217,87,0	scaffold149008_cov62	GLEAN	mRNA	262367	263137	0.49	-	.	ID=Soaet10009245
scaffold149008_cov62	262523	.	C	T	1176.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=31.80;SOR=1.432;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_262367_262485|GENE_EXON_scaffold149008_cov62_262367_262485|transcript|Soaet10009245|protein_coding|2/2|c.65-38G>A||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1205,87,0	scaffold149008_cov62	GLEAN	mRNA	262367	263137	0.49	-	.	ID=Soaet10009245
scaffold149008_cov62	262554	.	C	T	1148.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=28.72;SOR=1.151;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_262367_262485|GENE_EXON_scaffold149008_cov62_262367_262485|transcript|Soaet10009245|protein_coding|2/2|c.65-69G>A||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:84:1177,84,0	scaffold149008_cov62	GLEAN	mRNA	262367	263137	0.49	-	.	ID=Soaet10009245
scaffold149008_cov62	262718	.	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.05;SOR=0.811;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_262367_262485|GENE_EXON_scaffold149008_cov62_262367_262485|transcript|Soaet10009245|protein_coding|1/2|c.32-40T>C||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1186,84,0	scaffold149008_cov62	GLEAN	mRNA	262367	263137	0.49	-	.	ID=Soaet10009245
scaffold149008_cov62	262903	.	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.07;ReadPosRankSum=-0.473;SOR=0.914;ANN=T|intron_variant|MODIFIER|EXON_scaffold149008_cov62_262367_262485|GENE_EXON_scaffold149008_cov62_262367_262485|transcript|Soaet10009245|protein_coding|1/2|c.31+204G>A||||||	GT:AD:DP:GQ:PL	0/1:8,18:26:99:498,0,266	scaffold149008_cov62	GLEAN	mRNA	262367	263137	0.49	-	.	ID=Soaet10009245
scaffold149008_cov62	263068	.	A	G	831.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.83;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149008_cov62_262367_262485|GENE_EXON_scaffold149008_cov62_262367_262485|transcript|Soaet10009245|protein_coding|1/2|c.31+39T>C||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:63:860,63,0	scaffold149008_cov62	GLEAN	mRNA	262367	263137	0.49	-	.	ID=Soaet10009245
scaffold149008_cov62	263129	.	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.21;ReadPosRankSum=1.420;SOR=1.075;ANN=C|synonymous_variant|LOW|EXON_scaffold149008_cov62_262367_262485|GENE_EXON_scaffold149008_cov62_262367_262485|transcript|Soaet10009245|protein_coding|1/3|c.9A>G|p.Gln3Gln|9/183|9/183|3/60||	GT:AD:DP:GQ:PL	0/1:9,14:23:99:516,0,272	scaffold149008_cov62	GLEAN	mRNA	262367	263137	0.49	-	.	ID=Soaet10009245
scaffold149126_cov61	5101	.	A	G	771.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.87;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold149126_cov61_4850_5140|GENE_EXON_scaffold149126_cov61_4850_5140|transcript|Soaet10008846|protein_coding|1/1|c.40T>C|p.Cys14Arg|40/291|40/291|14/96||	GT:AD:DP:GQ:PL	1/1:0,25:25:57:800,57,0	scaffold149126_cov61	GLEAN	mRNA	4850	5140	0.49	-	.	ID=Soaet10008846
scaffold149126_cov61	49347	.	C	CTT	434.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.08;RPA=1,3;RU=T;SOR=1.402;STR;ANN=CTT|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|1/5|c.34+18_34+19insTT||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:27:472,27,0	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	49864	.	C	T	312.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SOR=0.836;ANN=T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|3/5|c.222+16C>T||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:24:341,24,0	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	49932	.	T	C	185.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|3/5|c.222+84T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:214,15,0	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	49963	.	C	T	146.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|3/5|c.222+115C>T||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:12:174,12,0	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	50216	.	A	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|3/5|c.222+368A>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	50503	.	C	T	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|3/5|c.222+655C>T||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	51823	.	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=8;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.816;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|4/5|c.317+162C>T||||||	GT:AD:DP:GQ:PL	0/1:4,4:8:99:111,0,111	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	51841	.	T	C	272.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.31;SOR=2.093;ANN=C|intron_variant|MODIFIER|EXON_scaffold149126_cov61_49296_49329|GENE_EXON_scaffold149126_cov61_49296_49329|transcript|Soaet10008847|protein_coding|4/5|c.317+180T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:21:301,21,0	scaffold149126_cov61	GLEAN	mRNA	49296	52636	0.88	+	.	ID=Soaet10008847
scaffold149126_cov61	132108	.	T	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.76;ReadPosRankSum=0.157;SOR=0.385;ANN=A|missense_variant|MODERATE|EXON_scaffold149126_cov61_132060_137137|GENE_EXON_scaffold149126_cov61_132060_137137|transcript|Soaet10008852|protein_coding|2/2|c.5184A>T|p.Leu1728Phe|5184/5232|5184/5232|1728/1743||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,17:22:99:463,0,123	scaffold149126_cov61	GLEAN	mRNA	132060	137379	0.52	-	.	ID=Soaet10008852
scaffold149126_cov61	132733	.	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.298;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149126_cov61_132060_137137|GENE_EXON_scaffold149126_cov61_132060_137137|transcript|Soaet10008852|protein_coding|2/2|c.4559T>C|p.Leu1520Ser|4559/5232|4559/5232|1520/1743||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:135,0,108	scaffold149126_cov61	GLEAN	mRNA	132060	137379	0.52	-	.	ID=Soaet10008852
scaffold149126_cov61	132890	.	CA	C	112.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.82;RPA=8,7;RU=A;ReadPosRankSum=0.210;SOR=0.707;STR;ANN=C|frameshift_variant|HIGH|EXON_scaffold149126_cov61_132060_137137|GENE_EXON_scaffold149126_cov61_132060_137137|transcript|Soaet10008852|protein_coding|2/2|c.4401delT|p.Phe1467fs|4401/5232|4401/5232|1467/1743||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149126_cov61_132060_137137|GENE_EXON_scaffold149126_cov61_132060_137137|1|1.00)	GT:AD:DP:GQ:PL	0/1:1,5:6:14:150,0,14	scaffold149126_cov61	GLEAN	mRNA	132060	137379	0.52	-	.	ID=Soaet10008852
scaffold149126_cov61	136999	.	C	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-3.361;QD=8.44;ReadPosRankSum=-0.428;SOR=2.030;ANN=G|missense_variant|MODERATE|EXON_scaffold149126_cov61_132060_137137|GENE_EXON_scaffold149126_cov61_132060_137137|transcript|Soaet10008852|protein_coding|2/2|c.293G>C|p.Arg98Pro|293/5232|293/5232|98/1743||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,5:13:99:138,0,224	scaffold149126_cov61	GLEAN	mRNA	132060	137379	0.52	-	.	ID=Soaet10008852
scaffold149126_cov61	153887	.	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-0.907;SOR=0.307;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149126_cov61_158870_159067|GENE_EXON_scaffold149126_cov61_158870_159067|transcript|Soaet10008857|protein_coding||c.-4983C>T|||||4983|,T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_152869_153120|GENE_EXON_scaffold149126_cov61_152869_153120|transcript|Soaet10008856|protein_coding|3/12|c.493+67C>T||||||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:198,0,454	scaffold149126_cov61	GLEAN	mRNA	152869	158781	0.01	+	.	ID=Soaet10008856
scaffold149126_cov61	153888	.	T	G	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-0.963;SOR=0.307;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149126_cov61_158870_159067|GENE_EXON_scaffold149126_cov61_158870_159067|transcript|Soaet10008857|protein_coding||c.-4982T>G|||||4982|,G|intron_variant|MODIFIER|EXON_scaffold149126_cov61_152869_153120|GENE_EXON_scaffold149126_cov61_152869_153120|transcript|Soaet10008856|protein_coding|3/12|c.493+68T>G||||||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:202,0,445	scaffold149126_cov61	GLEAN	mRNA	152869	158781	0.01	+	.	ID=Soaet10008856
scaffold149126_cov61	159434	.	G	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-4.017;QD=0.62;ReadPosRankSum=0.949;SOR=1.112;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149126_cov61_152869_153120|GENE_EXON_scaffold149126_cov61_152869_153120|transcript|Soaet10008856|protein_coding||c.*653G>T|||||653|,T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_158870_159067|GENE_EXON_scaffold149126_cov61_158870_159067|transcript|Soaet10008857|protein_coding|1/1|c.199-180G>T||||||	GT:AD:DP:GQ:PL	0/1:15,3:18:39:39,0,470	scaffold149126_cov61	GLEAN	mRNA	158870	159889	0.50	+	.	ID=Soaet10008857
scaffold149126_cov61	159443	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=-4.139;QD=1.15;ReadPosRankSum=0.651;SOR=0.399;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149126_cov61_152869_153120|GENE_EXON_scaffold149126_cov61_152869_153120|transcript|Soaet10008856|protein_coding||c.*662C>T|||||662|,T|intron_variant|MODIFIER|EXON_scaffold149126_cov61_158870_159067|GENE_EXON_scaffold149126_cov61_158870_159067|transcript|Soaet10008857|protein_coding|1/1|c.199-171C>T||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:50:50,0,436	scaffold149126_cov61	GLEAN	mRNA	158870	159889	0.50	+	.	ID=Soaet10008857
scaffold149126_cov61	159456	.	A	G	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=0;MQRankSum=-4.261;QD=0.79;ReadPosRankSum=0.898;SOR=0.495;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149126_cov61_152869_153120|GENE_EXON_scaffold149126_cov61_152869_153120|transcript|Soaet10008856|protein_coding||c.*675A>G|||||675|,G|intron_variant|MODIFIER|EXON_scaffold149126_cov61_158870_159067|GENE_EXON_scaffold149126_cov61_158870_159067|transcript|Soaet10008857|protein_coding|1/1|c.199-158A>G||||||	GT:AD:DP:GQ:PL	0/1:16,4:20:44:44,0,491	scaffold149126_cov61	GLEAN	mRNA	158870	159889	0.50	+	.	ID=Soaet10008857
scaffold149126_cov61	159471	.	T	A	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=-4.139;QD=0.99;ReadPosRankSum=0.902;SOR=0.399;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149126_cov61_152869_153120|GENE_EXON_scaffold149126_cov61_152869_153120|transcript|Soaet10008856|protein_coding||c.*690T>A|||||690|,A|intron_variant|MODIFIER|EXON_scaffold149126_cov61_158870_159067|GENE_EXON_scaffold149126_cov61_158870_159067|transcript|Soaet10008857|protein_coding|1/1|c.199-143T>A||||||	GT:AD:DP:GQ:PL	0/1:15,4:19:47:47,0,464	scaffold149126_cov61	GLEAN	mRNA	158870	159889	0.50	+	.	ID=Soaet10008857
scaffold149136_cov64	56354	.	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=31.25;SOR=0.732;ANN=G|missense_variant|MODERATE|EXON_scaffold149136_cov64_56206_56397|GENE_EXON_scaffold149136_cov64_56206_56397|transcript|Soaet10009066|protein_coding|1/1|c.44T>C|p.Val15Ala|44/192|44/192|15/63||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149136_cov64_56686_56871|GENE_EXON_scaffold149136_cov64_56686_56871|transcript|Soaet10009067|protein_coding||c.*332T>C|||||332|	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1622,117,0	scaffold149136_cov64	GLEAN	mRNA	56206	56397	1.00	-	.	ID=Soaet10009066
scaffold149136_cov64	56900	.	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DP=43;Dels=0.00;ExcessHet=3.0103;FS=9.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=0;MQRankSum=-5.639;QD=7.53;ReadPosRankSum=-0.547;SOR=2.179;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149136_cov64_56206_56397|GENE_EXON_scaffold149136_cov64_56206_56397|transcript|Soaet10009066|protein_coding||c.-503C>T|||||503|,A|intron_variant|MODIFIER|EXON_scaffold149136_cov64_56686_56871|GENE_EXON_scaffold149136_cov64_56686_56871|transcript|Soaet10009067|protein_coding|1/1|c.202-29C>T||||||	GT:AD:DP:GQ:PL	0/1:26,17:43:99:352,0,703	scaffold149136_cov64	GLEAN	mRNA	56686	57173	0.98	-	.	ID=Soaet10009067
scaffold149136_cov64	56944	.	A	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=46;Dels=0.00;ExcessHet=3.0103;FS=11.926;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=0;MQRankSum=-4.930;QD=2.13;ReadPosRankSum=-0.790;SOR=4.612;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149136_cov64_56206_56397|GENE_EXON_scaffold149136_cov64_56206_56397|transcript|Soaet10009066|protein_coding||c.-547T>G|||||547|,C|intron_variant|MODIFIER|EXON_scaffold149136_cov64_56686_56871|GENE_EXON_scaffold149136_cov64_56686_56871|transcript|Soaet10009067|protein_coding|1/1|c.201+29T>G||||||	GT:AD:DP:GQ:PL	0/1:37,9:46:99:126,0,1045	scaffold149136_cov64	GLEAN	mRNA	56686	57173	0.98	-	.	ID=Soaet10009067
scaffold149147_cov63	105848	.	T	C	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.481;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.05;ReadPosRankSum=0.567;SOR=0.444;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_104817_105057|GENE_EXON_scaffold149147_cov63_104817_105057|transcript|Soaet10008267|protein_coding|9/10|c.1368A>G|p.Ser456Ser|1368/1746|1368/1746|456/581||	GT:AD:DP:GQ:PL	0/1:9,28:37:99:807,0,242	scaffold149147_cov63	GLEAN	mRNA	104817	108552	1.00	-	.	ID=Soaet10008267
scaffold149147_cov63	106743	.	A	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.540;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-0.206;SOR=0.412;ANN=C|intron_variant|MODIFIER|EXON_scaffold149147_cov63_104817_105057|GENE_EXON_scaffold149147_cov63_104817_105057|transcript|Soaet10008267|protein_coding|5/9|c.803+16T>G||||||	GT:AD:DP:GQ:PL	0/1:12,14:26:99:339,0,329	scaffold149147_cov63	GLEAN	mRNA	104817	108552	1.00	-	.	ID=Soaet10008267
scaffold149147_cov63	106968	.	CA	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.46;RPA=12,11;RU=A;ReadPosRankSum=-0.035;SOR=0.495;STR;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold149147_cov63_104817_105057|GENE_EXON_scaffold149147_cov63_104817_105057|transcript|Soaet10008267|protein_coding|4/9|c.598-5delT||||||	GT:AD:DP:GQ:PL	0/1:10,11:23:99:236,0,202	scaffold149147_cov63	GLEAN	mRNA	104817	108552	1.00	-	.	ID=Soaet10008267
scaffold149147_cov63	108235	.	A	G	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.37;ReadPosRankSum=0.592;SOR=1.402;ANN=G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_104817_105057|GENE_EXON_scaffold149147_cov63_104817_105057|transcript|Soaet10008267|protein_coding|1/9|c.176-32T>C||||||	GT:AD:DP:GQ:PL	0/1:4,9:13:99:228,0,130	scaffold149147_cov63	GLEAN	mRNA	104817	108552	1.00	-	.	ID=Soaet10008267
scaffold149147_cov63	108441	.	T	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.19;ReadPosRankSum=-1.629;SOR=0.531;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_104817_105057|GENE_EXON_scaffold149147_cov63_104817_105057|transcript|Soaet10008267|protein_coding|1/10|c.112A>G|p.Thr38Ala|112/1746|112/1746|38/581||	GT:AD:DP:GQ:PL	0/1:10,21:31:99:499,0,275	scaffold149147_cov63	GLEAN	mRNA	104817	108552	1.00	-	.	ID=Soaet10008267
scaffold149147_cov63	108469	.	A	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-0.317;SOR=0.729;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_104817_105057|GENE_EXON_scaffold149147_cov63_104817_105057|transcript|Soaet10008267|protein_coding|1/10|c.84T>G|p.Asn28Lys|84/1746|84/1746|28/581||	GT:AD:DP:GQ:PL	0/1:10,16:26:99:438,0,281	scaffold149147_cov63	GLEAN	mRNA	104817	108552	1.00	-	.	ID=Soaet10008267
scaffold149147_cov63	150180	.	C	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-1.313;SOR=0.743;ANN=G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.802-137G>C||||||	GT:AD:DP:GQ:PL	0/1:14,20:34:99:554,0,396	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	150256	.	T	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.33;ReadPosRankSum=-0.225;SOR=0.603;ANN=C|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.802-213A>G||||||	GT:AD:DP:GQ:PL	0/1:15,21:36:99:580,0,497	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	150391	.	AAAAAG	A	879.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;DP=31;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=52.60;MQ0=0;MQRankSum=-3.751;QD=18.85;RPA=2,1;RU=AAAAG;ReadPosRankSum=-0.414;SOR=0.294;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.802-353_802-349delCTTTT||||||	GT:AD:DP:GQ:PL	0/1:14,14:30:99:917,0,993	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	150408	.	G	A	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.365;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-4.387;QD=12.87;ReadPosRankSum=-0.529;SOR=0.223;ANN=A|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.802-365C>T||||||	GT:AD:DP:GQ:PL	0/1:14,19:33:99:453,0,452	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	150869	.	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.12;MQ0=0;MQRankSum=-3.138;QD=6.68;ReadPosRankSum=1.099;SOR=1.044;ANN=G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.801+376T>C||||||	GT:AD:DP:GQ:PL	0/1:21,8:29:99:222,0,604	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	150942	.	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;DP=39;Dels=0.00;ExcessHet=3.0103;FS=6.927;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-4.070;QD=3.57;ReadPosRankSum=-0.283;SOR=2.472;ANN=C|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.801+303A>G||||||	GT:AD:DP:GQ:PL	0/1:31,7:39:99:164,0,914	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	151006	.	C	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=-4.075;QD=2.65;ReadPosRankSum=-0.047;SOR=0.957;ANN=G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.801+239G>C||||||	GT:AD:DP:GQ:PL	0/1:37,12:49:99:158,0,1141	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	151139	.	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;DP=41;Dels=0.00;ExcessHet=3.0103;FS=6.236;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-1.613;SOR=1.817;ANN=T|intron_variant|MODIFIER|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|2/3|c.801+106G>A||||||	GT:AD:DP:GQ:PL	0/1:33,8:41:99:157,0,967	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	152108	.	T	G	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.565;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-0.240;SOR=0.556;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_149737_149828|GENE_EXON_scaffold149147_cov63_149737_149828|transcript|Soaet10008270|protein_coding|1/4|c.345A>C|p.Ala115Ala|345/1011|345/1011|115/336||	GT:AD:DP:GQ:PL	0/1:13,18:31:99:521,0,289	scaffold149147_cov63	GLEAN	mRNA	149737	152452	0.76	-	.	ID=Soaet10008270
scaffold149147_cov63	238061	.	G	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.003;HaplotypeScore=3.8770;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=16;MQRankSum=-3.436;QD=3.29;ReadPosRankSum=0.712;SOR=0.223;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.1179C>G|p.Ala393Ala|1179/1755|1179/1755|393/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-1087G>C|||||1087|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*1563C>G|||||1563|	GT:AD:DP:GQ:PL	0/1:10,13:36:99:104,0,261	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238450	.	A	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-4.136;QD=1.83;ReadPosRankSum=0.701;SOR=0.582;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.790T>G|p.Phe264Val|790/1755|790/1755|264/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-698A>C|||||698|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*1174T>G|||||1174|	GT:AD:DP:GQ:PL	0/1:15,4:19:63:63,0,405	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238502	.	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=20;Dels=0.00;ExcessHet=3.0103;FS=5.180;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.07;MQ0=1;MQRankSum=-2.425;QD=5.54;ReadPosRankSum=-1.901;SOR=1.925;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.738A>G|p.Ser246Ser|738/1755|738/1755|246/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-646T>C|||||646|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*1122A>G|||||1122|	GT:AD:DP:GQ:PL	0/1:14,6:20:99:139,0,365	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238581	.	A	AT	414.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=1.000;QD=25.92;RPA=8,9;RU=T;ReadPosRankSum=1.086;SOR=0.416;STR;ANN=AT|frameshift_variant|HIGH|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.658dupA|p.Ile220fs|658/1755|658/1755|220/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,AT|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-567_-566insT|||||566|,AT|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*1042dupA|||||1042|;LOF=(EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|1|1.00)	GT:AD:DP:GQ:PL	1/1:1,15:20:36:452,36,0	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238653	.	A	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=12;MQRankSum=0.333;QD=3.40;ReadPosRankSum=-1.372;SOR=1.479;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.587T>G|p.Ile196Arg|587/1755|587/1755|196/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-495A>C|||||495|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*971T>G|||||971|	GT:AD:DP:GQ:PL	0/1:23,4:27:99:120,0,296	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238680	.	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DP=26;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=12;MQRankSum=-0.319;QD=2.26;ReadPosRankSum=0.000;SOR=2.817;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.560G>A|p.Cys187Tyr|560/1755|560/1755|187/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-468C>T|||||468|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*944G>A|||||944|	GT:AD:DP:GQ:PL	0/1:23,3:26:87:87,0,275	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238755	.	C	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=8;MQRankSum=-0.352;QD=2.76;ReadPosRankSum=-1.001;SOR=0.916;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.485G>T|p.Gly162Val|485/1755|485/1755|162/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-393C>A|||||393|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*869G>T|||||869|	GT:AD:DP:GQ:PL	0/1:15,3:18:78:78,0,192	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238785	.	T	G	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.97;MQ0=2;MQRankSum=-1.242;QD=2.38;ReadPosRankSum=-1.068;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.455A>C|p.Lys152Thr|455/1755|455/1755|152/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-363T>G|||||363|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*839A>C|||||839|	GT:AD:DP:GQ:PL	0/1:6,4:10:52:52,0,175	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238933	.	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DP=41;Dels=0.00;ExcessHet=3.0103;FS=6.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=22;MQRankSum=0.571;QD=1.26;ReadPosRankSum=0.056;SOR=2.812;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.307C>T|p.His103Tyr|307/1755|307/1755|103/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-215G>A|||||215|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*691C>T|||||691|	GT:AD:DP:GQ:PL	0/1:37,4:41:80:80,0,416	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	238992	.	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=45.02;MQ0=2;MQRankSum=-0.358;QD=7.04;ReadPosRankSum=-0.402;SOR=1.256;ANN=C|stop_retained_variant|LOW|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.248A>G|p.Ter83Ter|248/1755|248/1755|83/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-156T>C|||||156|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*632A>G|||||632|	GT:AD:DP:GQ:PL	0/1:11,8:19:99:162,0,327	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239019	.	T	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.29;MQ0=1;MQRankSum=-0.522;QD=6.45;ReadPosRankSum=-0.625;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.221A>C|p.Lys74Thr|221/1755|221/1755|74/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-129T>G|||||129|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*605A>C|||||605|	GT:AD:DP:GQ:PL	0/1:8,7:15:99:125,0,246	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239107	.	G	A	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4537;MLEAC=1;MLEAF=0.500;MQ=53.46;MQ0=0;MQRankSum=1.443;QD=10.41;ReadPosRankSum=1.249;SOR=0.473;ANN=A|synonymous_variant|LOW|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.133C>T|p.Leu45Leu|133/1755|133/1755|45/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-41G>A|||||41|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*517C>T|||||517|	GT:AD:DP:GQ:PL	0/1:13,11:24:99:278,0,247	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239143	.	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;DP=77;Dels=0.00;ExcessHet=3.0103;FS=18.337;HaplotypeScore=13.2771;MLEAC=1;MLEAF=0.500;MQ=30.42;MQ0=8;MQRankSum=-3.644;QD=6.71;ReadPosRankSum=-2.418;SOR=4.938;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.97A>G|p.Ser33Gly|97/1755|97/1755|33/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-5T>C|||||5|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*481A>G|||||481|	GT:AD:DP:GQ:PL	0/1:7,70:77:99:545,0,148	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239145	.	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DP=78;Dels=0.00;ExcessHet=3.0103;FS=13.365;HaplotypeScore=13.2771;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=9;MQRankSum=-6.184;QD=1.08;ReadPosRankSum=-2.828;SOR=7.864;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.95C>T|p.Ser32Phe|95/1755|95/1755|32/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding||c.-3G>A|||||3|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*479C>T|||||479|	GT:AD:DP:GQ:PL	0/1:17,59:78:99:110,0,528	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239157	.	A	T	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=144;Dels=0.00;ExcessHet=3.0103;FS=53.734;HaplotypeScore=16.7071;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=13;MQRankSum=-6.634;QD=8.91;ReadPosRankSum=-3.414;SOR=9.190;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.83T>A|p.Met28Lys|83/1755|83/1755|28/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|1/6|c.10A>T|p.Met4Leu|10/1446|10/1446|4/481||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*467T>A|||||467|	GT:AD:DP:GQ:PL	0/1:17,122:144:99:1267,0,416	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239157	.	A	T	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=144;Dels=0.00;ExcessHet=3.0103;FS=53.734;HaplotypeScore=16.7071;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=13;MQRankSum=-6.634;QD=8.91;ReadPosRankSum=-3.414;SOR=9.190;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|2/2|c.83T>A|p.Met28Lys|83/1755|83/1755|28/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|1/6|c.10A>T|p.Met4Leu|10/1446|10/1446|4/481||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*467T>A|||||467|	GT:AD:DP:GQ:PL	0/1:17,122:144:99:1267,0,416	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239263	.	A	C	3252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=237;Dels=0.00;ExcessHet=3.0103;FS=38.653;HaplotypeScore=30.1781;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=62;MQRankSum=-5.915;QD=13.90;ReadPosRankSum=4.211;SOR=8.202;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*361T>G|||||361|,C|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-58T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|1/5|c.83+33A>C||||||	GT:AD:DP:GQ:PL	0/1:16,218:237:99:3281,0,246	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239263	.	A	C	3252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=237;Dels=0.00;ExcessHet=3.0103;FS=38.653;HaplotypeScore=30.1781;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=62;MQRankSum=-5.915;QD=13.90;ReadPosRankSum=4.211;SOR=8.202;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*361T>G|||||361|,C|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-58T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|1/5|c.83+33A>C||||||	GT:AD:DP:GQ:PL	0/1:16,218:237:99:3281,0,246	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239277	.	A	G	3451.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=226;Dels=0.00;ExcessHet=3.0103;FS=13.769;HaplotypeScore=23.7566;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=55;MQRankSum=-4.132;QD=15.27;ReadPosRankSum=3.429;SOR=4.952;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*347T>C|||||347|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-72T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|1/5|c.84-25A>G||||||	GT:AD:DP:GQ:PL	1/1:12,214:226:21:3480,21,0	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239277	.	A	G	3451.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=226;Dels=0.00;ExcessHet=3.0103;FS=13.769;HaplotypeScore=23.7566;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=55;MQRankSum=-4.132;QD=15.27;ReadPosRankSum=3.429;SOR=4.952;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*347T>C|||||347|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-72T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|1/5|c.84-25A>G||||||	GT:AD:DP:GQ:PL	1/1:12,214:226:21:3480,21,0	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239307	.	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DP=250;Dels=0.00;ExcessHet=3.0103;FS=18.410;HaplotypeScore=21.5515;MLEAC=1;MLEAF=0.500;MQ=19.76;MQ0=160;MQRankSum=3.322;QD=0.29;ReadPosRankSum=1.535;SOR=0.002;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|2/6|c.89C>T|p.Pro30Leu|89/1446|89/1446|30/481||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*317G>A|||||317|,T|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-102G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:242,8:250:99:100,0,1612	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239307	.	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DP=250;Dels=0.00;ExcessHet=3.0103;FS=18.410;HaplotypeScore=21.5515;MLEAC=1;MLEAF=0.500;MQ=19.76;MQ0=160;MQRankSum=3.322;QD=0.29;ReadPosRankSum=1.535;SOR=0.002;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|2/6|c.89C>T|p.Pro30Leu|89/1446|89/1446|30/481||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*317G>A|||||317|,T|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-102G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:242,8:250:99:100,0,1612	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239322	.	C	G	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.517;DP=250;Dels=0.00;ExcessHet=3.0103;FS=34.574;HaplotypeScore=19.4349;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=145;MQRankSum=-5.942;QD=3.25;ReadPosRankSum=-5.374;SOR=6.529;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|2/6|c.104C>G|p.Ala35Gly|104/1446|104/1446|35/481||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*302G>C|||||302|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-117G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,228:250:99:837,0,455	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239322	.	C	G	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.517;DP=250;Dels=0.00;ExcessHet=3.0103;FS=34.574;HaplotypeScore=19.4349;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=145;MQRankSum=-5.942;QD=3.25;ReadPosRankSum=-5.374;SOR=6.529;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|2/6|c.104C>G|p.Ala35Gly|104/1446|104/1446|35/481||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*302G>C|||||302|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-117G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,228:250:99:837,0,455	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239332	.	A	G	2869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.415;DP=250;Dels=0.00;ExcessHet=3.0103;FS=1.277;HaplotypeScore=16.0268;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=43;MQRankSum=-4.291;QD=11.53;ReadPosRankSum=-6.681;SOR=1.121;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|2/6|c.114A>G|p.Gln38Gln|114/1446|114/1446|38/481||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*292T>C|||||292|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-127T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,226:250:99:2898,0,285	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239332	.	A	G	2869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.415;DP=250;Dels=0.00;ExcessHet=3.0103;FS=1.277;HaplotypeScore=16.0268;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=43;MQRankSum=-4.291;QD=11.53;ReadPosRankSum=-6.681;SOR=1.121;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|2/6|c.114A>G|p.Gln38Gln|114/1446|114/1446|38/481||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*292T>C|||||292|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.35-127T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,226:250:99:2898,0,285	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239518	.	A	G	1992.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.480;DP=181;Dels=0.00;ExcessHet=3.0103;FS=23.882;HaplotypeScore=10.8196;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=50;MQRankSum=-5.101;QD=11.01;ReadPosRankSum=0.218;SOR=5.994;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.215A>G|p.Asp72Gly|215/1446|215/1446|72/481||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*106T>C|||||106|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.34+50T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,171:181:5:2020,0,5	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239518	.	A	G	1992.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.480;DP=181;Dels=0.00;ExcessHet=3.0103;FS=23.882;HaplotypeScore=10.8196;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=50;MQRankSum=-5.101;QD=11.01;ReadPosRankSum=0.218;SOR=5.994;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.215A>G|p.Asp72Gly|215/1446|215/1446|72/481||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*106T>C|||||106|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/1|c.34+50T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,171:181:5:2020,0,5	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239571	.	T	C	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;DP=144;Dels=0.00;ExcessHet=3.0103;FS=34.815;HaplotypeScore=7.7090;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=35;MQRankSum=-5.052;QD=10.23;ReadPosRankSum=-5.298;SOR=6.294;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/2|c.31A>G|p.Ile11Val|31/1755|31/1755|11/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.268T>C|p.Trp90Arg|268/1446|268/1446|90/481||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*53A>G|||||53|	GT:AD:DP:GQ:PL	0/1:14,129:144:99:1491,0,231	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239571	.	T	C	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;DP=144;Dels=0.00;ExcessHet=3.0103;FS=34.815;HaplotypeScore=7.7090;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=35;MQRankSum=-5.052;QD=10.23;ReadPosRankSum=-5.298;SOR=6.294;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/2|c.31A>G|p.Ile11Val|31/1755|31/1755|11/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.268T>C|p.Trp90Arg|268/1446|268/1446|90/481||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*53A>G|||||53|	GT:AD:DP:GQ:PL	0/1:14,129:144:99:1491,0,231	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239581	.	T	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;DP=108;Dels=0.00;ExcessHet=3.0103;FS=12.401;HaplotypeScore=5.8772;MLEAC=1;MLEAF=0.500;MQ=30.34;MQ0=28;MQRankSum=-5.305;QD=7.34;ReadPosRankSum=-4.992;SOR=4.580;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.278T>C|p.Leu93Ser|278/1446|278/1446|93/481||,C|synonymous_variant|LOW|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/2|c.21A>G|p.Ala7Ala|21/1755|21/1755|7/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*43A>G|||||43|	GT:AD:DP:GQ:PL	0/1:18,90:108:99:821,0,358	scaffold149147_cov63	GLEAN	mRNA	237485	239601	0.42	-	.	ID=Soaet10008271
scaffold149147_cov63	239581	.	T	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;DP=108;Dels=0.00;ExcessHet=3.0103;FS=12.401;HaplotypeScore=5.8772;MLEAC=1;MLEAF=0.500;MQ=30.34;MQ0=28;MQRankSum=-5.305;QD=7.34;ReadPosRankSum=-4.992;SOR=4.580;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.278T>C|p.Leu93Ser|278/1446|278/1446|93/481||,C|synonymous_variant|LOW|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding|1/2|c.21A>G|p.Ala7Ala|21/1755|21/1755|7/584||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*43A>G|||||43|	GT:AD:DP:GQ:PL	0/1:18,90:108:99:821,0,358	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239604	.	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.239;HaplotypeScore=14.8091;MLEAC=1;MLEAF=0.500;MQ=50.48;MQ0=1;MQRankSum=0.451;QD=7.88;ReadPosRankSum=0.070;SOR=0.693;ANN=T|stop_gained|HIGH|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.301C>T|p.Gln101*|301/1446|301/1446|101/481||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-3G>A|||||3|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.*20G>A|||||20|;LOF=(EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|1|1.00);NMD=(EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|1|1.00)	GT:AD:DP:GQ:PL	0/1:24,12:37:99:312,0,439	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239679	.	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420;DP=79;Dels=0.00;ExcessHet=3.0103;FS=36.885;HaplotypeScore=45.7269;MLEAC=1;MLEAF=0.500;MQ=44.02;MQ0=3;MQRankSum=-7.253;QD=3.93;ReadPosRankSum=4.521;SOR=5.670;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.376A>G|p.Lys126Glu|376/1446|376/1446|126/481||,G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.164T>C|p.Leu55Ser|164/219|164/219|55/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-78T>C|||||78|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,37:79:99:327,0,933	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239679	.	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420;DP=79;Dels=0.00;ExcessHet=3.0103;FS=36.885;HaplotypeScore=45.7269;MLEAC=1;MLEAF=0.500;MQ=44.02;MQ0=3;MQRankSum=-7.253;QD=3.93;ReadPosRankSum=4.521;SOR=5.670;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.376A>G|p.Lys126Glu|376/1446|376/1446|126/481||,G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.164T>C|p.Leu55Ser|164/219|164/219|55/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-78T>C|||||78|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,37:79:99:327,0,933	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239689	.	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=75;Dels=0.00;ExcessHet=3.0103;FS=33.027;HaplotypeScore=31.7771;MLEAC=1;MLEAF=0.500;MQ=45.01;MQ0=3;MQRankSum=-6.999;QD=3.21;ReadPosRankSum=4.210;SOR=4.390;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.386A>G|p.Gln129Arg|386/1446|386/1446|129/481||,G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.154T>C|p.Trp52Arg|154/219|154/219|52/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-88T>C|||||88|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,35:75:99:266,0,926	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239689	.	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=75;Dels=0.00;ExcessHet=3.0103;FS=33.027;HaplotypeScore=31.7771;MLEAC=1;MLEAF=0.500;MQ=45.01;MQ0=3;MQRankSum=-6.999;QD=3.21;ReadPosRankSum=4.210;SOR=4.390;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.386A>G|p.Gln129Arg|386/1446|386/1446|129/481||,G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.154T>C|p.Trp52Arg|154/219|154/219|52/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-88T>C|||||88|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:39,35:75:99:266,0,926	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239722	.	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;DP=62;Dels=0.00;ExcessHet=3.0103;FS=21.203;HaplotypeScore=29.0773;MLEAC=1;MLEAF=0.500;MQ=49.88;MQ0=3;MQRankSum=-6.853;QD=2.96;ReadPosRankSum=0.384;SOR=5.594;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.419T>C|p.Met140Thr|419/1446|419/1446|140/481||,C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.121A>G|p.Ile41Val|121/219|121/219|41/72||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-121A>G|||||121|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:40,20:62:99:206,0,1099	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239722	.	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;DP=62;Dels=0.00;ExcessHet=3.0103;FS=21.203;HaplotypeScore=29.0773;MLEAC=1;MLEAF=0.500;MQ=49.88;MQ0=3;MQRankSum=-6.853;QD=2.96;ReadPosRankSum=0.384;SOR=5.594;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.419T>C|p.Met140Thr|419/1446|419/1446|140/481||,C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.121A>G|p.Ile41Val|121/219|121/219|41/72||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-121A>G|||||121|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:40,20:62:99:206,0,1099	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239724	.	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DP=60;Dels=0.00;ExcessHet=3.0103;FS=18.390;HaplotypeScore=28.4122;MLEAC=1;MLEAF=0.500;MQ=50.09;MQ0=3;MQRankSum=-6.520;QD=1.88;ReadPosRankSum=-0.583;SOR=5.584;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.421A>G|p.Thr141Ala|421/1446|421/1446|141/481||,G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.119T>C|p.Val40Ala|119/219|119/219|40/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-123T>C|||||123|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,20:60:99:137,0,1135	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239724	.	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DP=60;Dels=0.00;ExcessHet=3.0103;FS=18.390;HaplotypeScore=28.4122;MLEAC=1;MLEAF=0.500;MQ=50.09;MQ0=3;MQRankSum=-6.520;QD=1.88;ReadPosRankSum=-0.583;SOR=5.584;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.421A>G|p.Thr141Ala|421/1446|421/1446|141/481||,G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.119T>C|p.Val40Ala|119/219|119/219|40/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-123T>C|||||123|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,20:60:99:137,0,1135	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239731	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;DP=60;Dels=0.00;ExcessHet=3.0103;FS=8.619;HaplotypeScore=30.1204;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=3;MQRankSum=-5.098;QD=0.42;ReadPosRankSum=-0.165;SOR=4.034;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.428G>A|p.Arg143His|428/1446|428/1446|143/481||,A|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.112C>T|p.Arg38Trp|112/219|112/219|38/72||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-130C>T|||||130|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:45,14:60:53:53,0,1094	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239731	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;DP=60;Dels=0.00;ExcessHet=3.0103;FS=8.619;HaplotypeScore=30.1204;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=3;MQRankSum=-5.098;QD=0.42;ReadPosRankSum=-0.165;SOR=4.034;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.428G>A|p.Arg143His|428/1446|428/1446|143/481||,A|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.112C>T|p.Arg38Trp|112/219|112/219|38/72||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-130C>T|||||130|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:45,14:60:53:53,0,1094	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239775	.	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.1574;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=1;MQRankSum=-2.212;QD=12.82;ReadPosRankSum=-0.932;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.472T>C|p.Cys158Arg|472/1446|472/1446|158/481||,C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.68A>G|p.His23Arg|68/219|68/219|23/72||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-174A>G|||||174|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:477,0,350	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239775	.	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.1574;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=1;MQRankSum=-2.212;QD=12.82;ReadPosRankSum=-0.932;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.472T>C|p.Cys158Arg|472/1446|472/1446|158/481||,C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.68A>G|p.His23Arg|68/219|68/219|23/72||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-174A>G|||||174|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,19:35:99:477,0,350	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239819	.	A	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.510;HaplotypeScore=8.2429;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-2.997;QD=13.44;ReadPosRankSum=-0.514;SOR=0.986;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.516A>G|p.Pro172Pro|516/1446|516/1446|172/481||,G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.24T>C|p.Asn8Asn|24/219|24/219|8/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-218T>C|||||218|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:445,0,336	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239819	.	A	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.510;HaplotypeScore=8.2429;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-2.997;QD=13.44;ReadPosRankSum=-0.514;SOR=0.986;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.516A>G|p.Pro172Pro|516/1446|516/1446|172/481||,G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.24T>C|p.Asn8Asn|24/219|24/219|8/72||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-218T>C|||||218|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:445,0,336	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239833	.	C	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=5.1314;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=1;MQRankSum=-2.332;QD=13.88;ReadPosRankSum=0.163;SOR=1.388;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.530C>T|p.Pro177Leu|530/1446|530/1446|177/481||,T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.10G>A|p.Gly4Ser|10/219|10/219|4/72||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-232G>A|||||232|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:389,0,325	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239833	.	C	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=5.1314;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=1;MQRankSum=-2.332;QD=13.88;ReadPosRankSum=0.163;SOR=1.388;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.530C>T|p.Pro177Leu|530/1446|530/1446|177/481||,T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding|1/1|c.10G>A|p.Gly4Ser|10/219|10/219|4/72||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-232G>A|||||232|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:389,0,325	scaffold149147_cov63	GLEAN	mRNA	239624	239842	0.41	-	.	ID=Soaet10008273
scaffold149147_cov63	239843	.	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.172;HaplotypeScore=4.7676;MLEAC=1;MLEAF=0.500;MQ=55.35;MQ0=1;MQRankSum=-2.018;QD=17.77;ReadPosRankSum=-0.650;SOR=1.322;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.540T>C|p.Ile180Ile|540/1446|540/1446|180/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-242A>G|||||242|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-1A>G|||||1|	GT:AD:DP:GQ:PL	0/1:11,16:27:99:508,0,257	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239871	.	C	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.921;HaplotypeScore=12.4127;MLEAC=1;MLEAF=0.500;MQ=48.25;MQ0=2;MQRankSum=2.345;QD=12.95;ReadPosRankSum=0.613;SOR=1.329;ANN=T|stop_gained|HIGH|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.568C>T|p.Gln190*|568/1446|568/1446|190/481||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-270G>A|||||270|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-29G>A|||||29|;LOF=(EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|1|1.00);NMD=(EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|1|1.00)	GT:AD:DP:GQ:PL	0/1:24,18:42:99:572,0,318	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	239904	.	T	G	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.4666;MLEAC=1;MLEAF=0.500;MQ=49.27;MQ0=1;MQRankSum=-1.726;QD=16.35;ReadPosRankSum=1.271;SOR=1.460;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/6|c.601T>G|p.Phe201Val|601/1446|601/1446|201/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-303A>C|||||303|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-62A>C|||||62|	GT:AD:DP:GQ:PL	0/1:6,30:36:99:617,0,118	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240037	.	T	C	1872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;DP=250;Dels=0.00;ExcessHet=3.0103;FS=15.047;HaplotypeScore=24.3965;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=59;MQRankSum=-4.581;QD=7.49;ReadPosRankSum=-1.292;SOR=4.309;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|3/5|c.652-6T>C||||||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-436A>G|||||436|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-195A>G|||||195|	GT:AD:DP:GQ:PL	0/1:13,237:250:99:1901,0,184	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240049	.	A	G	3228.29	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DP=249;Dels=0.00;ExcessHet=3.0103;FS=61.611;HaplotypeScore=15.9884;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=42;MQRankSum=-5.629;QD=13.02;ReadPosRankSum=-4.452;SOR=5.716;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|4/6|c.658A>G|p.Ser220Gly|658/1446|658/1446|220/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-448T>C|||||448|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-207T>C|||||207|	GT:AD:DP:GQ:PL	0/1:25,223:248:99:3257,0,393	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240157	.	A	G	3144.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.247;DP=250;Dels=0.00;ExcessHet=3.0103;FS=62.758;HaplotypeScore=9.0905;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=25;MQRankSum=-5.358;QD=12.58;ReadPosRankSum=-0.080;SOR=5.677;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|4/6|c.766A>G|p.Asn256Asp|766/1446|766/1446|256/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-556T>C|||||556|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-315T>C|||||315|	GT:AD:DP:GQ:PL	1/1:10,240:250:23:3173,23,0	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240192	.	A	G	2782.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.724;DP=250;Dels=0.00;ExcessHet=3.0103;FS=47.257;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=20;MQRankSum=-4.818;QD=11.13;ReadPosRankSum=-1.732;SOR=7.186;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-591T>C|||||591|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-350T>C|||||350|,G|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|4/5|c.789+12A>G||||||	GT:AD:DP:GQ:PL	1/1:8,242:250:58:2811,58,0	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240209	.	C	T	3524.88	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.414;DP=250;Dels=0.00;ExcessHet=3.0103;FS=49.000;HaplotypeScore=7.5577;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=12;MQRankSum=-5.275;QD=14.10;ReadPosRankSum=-1.910;SOR=8.336;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-608G>A|||||608|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-367G>A|||||367|,T|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|4/5|c.789+29C>T||||||	GT:AD:DP:GQ:PL	1/1:17,233:250:16:3553,16,0	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240302	.	T	C	3856.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.594;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.2546;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=14;MQRankSum=-4.098;QD=15.49;ReadPosRankSum=-2.338;SOR=0.619;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.840T>C|p.Gly280Gly|840/1446|840/1446|280/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-701A>G|||||701|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-460A>G|||||460|	GT:AD:DP:GQ:PL	1/1:9,240:250:64:3885,64,0	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240309	.	C	G	4385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.223;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.2116;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=12;MQRankSum=-3.831;QD=17.68;ReadPosRankSum=-1.038;SOR=0.619;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.847C>G|p.Leu283Val|847/1446|847/1446|283/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-708G>C|||||708|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-467G>C|||||467|	GT:AD:DP:GQ:PL	1/1:5,243:250:99:4414,230,0	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240322	.	A	G	3994.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.5138;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=15;MQRankSum=-3.850;QD=15.98;ReadPosRankSum=-2.441;SOR=0.363;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.860A>G|p.His287Arg|860/1446|860/1446|287/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-721T>C|||||721|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-480T>C|||||480|	GT:AD:DP:GQ:PL	1/1:7,243:250:99:4023,158,0	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240393	.	A	G	2762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DP=194;Dels=0.00;ExcessHet=3.0103;FS=26.780;HaplotypeScore=32.5458;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=13;MQRankSum=-5.392;QD=14.31;ReadPosRankSum=4.496;SOR=2.976;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.931A>G|p.Met311Val|931/1446|931/1446|311/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-792T>C|||||792|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-551T>C|||||551|	GT:AD:DP:GQ:PL	0/1:16,177:194:99:2791,0,259	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240398	.	T	C	2652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=191;Dels=0.00;ExcessHet=3.0103;FS=26.401;HaplotypeScore=29.0639;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=13;MQRankSum=-5.446;QD=13.96;ReadPosRankSum=4.839;SOR=3.231;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.936T>C|p.Asp312Asp|936/1446|936/1446|312/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-797A>G|||||797|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-556A>G|||||556|	GT:AD:DP:GQ:PL	0/1:18,172:191:99:2681,0,264	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240401	.	A	G	2613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;DP=190;Dels=0.00;ExcessHet=3.0103;FS=37.483;HaplotypeScore=22.2329;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=13;MQRankSum=-5.711;QD=13.76;ReadPosRankSum=5.743;SOR=3.476;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.939A>G|p.Ser313Ser|939/1446|939/1446|313/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-800T>C|||||800|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-559T>C|||||559|	GT:AD:DP:GQ:PL	0/1:20,170:190:99:2642,0,336	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240416	.	A	G	2696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.605;DP=188;Dels=0.00;ExcessHet=3.0103;FS=37.332;HaplotypeScore=11.8606;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=14;MQRankSum=-6.239;QD=14.34;ReadPosRankSum=3.752;SOR=3.866;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.954A>G|p.Pro318Pro|954/1446|954/1446|318/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-815T>C|||||815|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-574T>C|||||574|	GT:AD:DP:GQ:PL	0/1:19,169:188:99:2725,0,295	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240450	.	T	C	2144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.432;DP=166;Dels=0.00;ExcessHet=3.0103;FS=43.281;HaplotypeScore=11.8578;MLEAC=1;MLEAF=0.500;MQ=29.44;MQ0=11;MQRankSum=-6.829;QD=13.00;ReadPosRankSum=-4.513;SOR=5.815;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.988T>C|p.Ser330Pro|988/1446|988/1446|330/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-849A>G|||||849|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-608A>G|||||608|	GT:AD:DP:GQ:PL	0/1:21,144:166:99:2173,0,428	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240472	.	G	C	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.995;DP=85;Dels=0.00;ExcessHet=3.0103;FS=51.626;HaplotypeScore=34.8714;MLEAC=1;MLEAF=0.500;MQ=35.60;MQ0=5;MQRankSum=-4.870;QD=8.31;ReadPosRankSum=-7.249;SOR=5.790;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1010G>C|p.Gly337Ala|1010/1446|1010/1446|337/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-871C>G|||||871|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-630C>G|||||630|	GT:AD:DP:GQ:PL	0/1:32,53:85:99:735,0,630	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240474	.	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=24.2959;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=2;MQRankSum=-3.924;QD=6.43;ReadPosRankSum=-3.027;SOR=1.920;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1012A>G|p.Arg338Gly|1012/1446|1012/1446|338/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-873T>C|||||873|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-632T>C|||||632|	GT:AD:DP:GQ:PL	0/1:16,25:41:99:292,0,359	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240479	.	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.173;HaplotypeScore=21.5664;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=5;MQRankSum=-5.212;QD=8.23;ReadPosRankSum=-3.998;SOR=3.126;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1017A>G|p.Ala339Ala|1017/1446|1017/1446|339/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-878T>C|||||878|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-637T>C|||||637|	GT:AD:DP:GQ:PL	0/1:14,59:73:99:629,0,323	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240517	.	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=250;Dels=0.00;ExcessHet=3.0103;FS=49.894;HaplotypeScore=39.3734;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=14;MQRankSum=5.301;QD=0.26;ReadPosRankSum=1.089;SOR=0.812;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1055C>T|p.Pro352Leu|1055/1446|1055/1446|352/481||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-916G>A|||||916|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-675G>A|||||675|	GT:AD:DP:GQ:PL	0/1:236,13:250:92:92,0,2898	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240521	.	T	C	2094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;DP=250;Dels=0.00;ExcessHet=3.0103;FS=80.842;HaplotypeScore=36.8776;MLEAC=1;MLEAF=0.500;MQ=25.02;MQ0=15;MQRankSum=-8.666;QD=8.48;ReadPosRankSum=-1.197;SOR=8.159;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1059T>C|p.Asp353Asp|1059/1446|1059/1446|353/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-920A>G|||||920|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-679A>G|||||679|	GT:AD:DP:GQ:PL	0/1:30,217:250:99:2123,0,615	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240565	.	A	G	2277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;DP=246;Dels=0.00;ExcessHet=3.0103;FS=17.956;HaplotypeScore=29.7798;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=16;MQRankSum=-4.062;QD=9.26;ReadPosRankSum=4.846;SOR=4.308;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1103A>G|p.Glu368Gly|1103/1446|1103/1446|368/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-964T>C|||||964|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-723T>C|||||723|	GT:AD:DP:GQ:PL	0/1:17,229:246:99:2306,0,177	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240571	.	A	G	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;DP=250;Dels=0.00;ExcessHet=3.0103;FS=73.549;HaplotypeScore=26.9420;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=16;MQRankSum=-8.608;QD=7.04;ReadPosRankSum=5.490;SOR=8.429;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1109A>G|p.Tyr370Cys|1109/1446|1109/1446|370/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-970T>C|||||970|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-729T>C|||||729|	GT:AD:DP:GQ:PL	0/1:30,220:250:99:1789,0,719	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240585	.	C	G	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DP=243;Dels=0.00;ExcessHet=3.0103;FS=97.063;HaplotypeScore=19.9368;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=14;MQRankSum=-8.307;QD=7.73;ReadPosRankSum=3.189;SOR=9.210;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1123C>G|p.Leu375Val|1123/1446|1123/1446|375/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-984G>C|||||984|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-743G>C|||||743|	GT:AD:DP:GQ:PL	0/1:26,214:243:99:1883,0,669	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240646	.	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.722;HaplotypeScore=15.4725;MLEAC=1;MLEAF=0.500;MQ=32.04;MQ0=8;MQRankSum=-8.785;QD=0.40;ReadPosRankSum=-3.778;SOR=6.518;ANN=G|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1184A>G|p.His395Arg|1184/1446|1184/1446|395/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1045T>C|||||1045|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-804T>C|||||804|	GT:AD:DP:GQ:PL	0/1:37,87:125:78:78,0,951	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240674	.	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=26.6210;MLEAC=1;MLEAF=0.500;MQ=43.04;MQ0=3;MQRankSum=0.095;QD=1.41;ReadPosRankSum=2.750;SOR=0.223;ANN=A|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1212G>A|p.Pro404Pro|1212/1446|1212/1446|404/481||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1073C>T|||||1073|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-832C>T|||||832|	GT:AD:DP:GQ:PL	0/1:58,10:68:99:124,0,850	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240677	.	T	C	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=33.5756;MLEAC=1;MLEAF=0.500;MQ=45.92;MQ0=3;MQRankSum=-6.327;QD=3.92;ReadPosRankSum=0.782;SOR=1.926;ANN=C|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1215T>C|p.Pro405Pro|1215/1446|1215/1446|405/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1076A>G|||||1076|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-835A>G|||||835|	GT:AD:DP:GQ:PL	0/1:31,31:62:99:271,0,752	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240686	.	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=48.6035;MLEAC=1;MLEAF=0.500;MQ=48.01;MQ0=2;MQRankSum=-1.087;QD=1.60;ReadPosRankSum=2.108;SOR=0.446;ANN=T|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1224C>T|p.Pro408Pro|1224/1446|1224/1446|408/481||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1085G>A|||||1085|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-844G>A|||||844|	GT:AD:DP:GQ:PL	0/1:48,8:56:99:118,0,905	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240689	.	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=35.7353;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=2;MQRankSum=-5.908;QD=0.87;ReadPosRankSum=0.133;SOR=2.133;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1227A>G|p.Ala409Ala|1227/1446|1227/1446|409/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1088T>C|||||1088|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-847T>C|||||847|	GT:AD:DP:GQ:PL	0/1:36,19:55:76:76,0,891	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240704	.	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.8187;MLEAC=1;MLEAF=0.500;MQ=47.87;MQ0=2;MQRankSum=3.083;QD=6.09;ReadPosRankSum=0.693;SOR=0.265;ANN=A|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1242G>A|p.Ala414Ala|1242/1446|1242/1446|414/481||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1103C>T|||||1103|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-862C>T|||||862|	GT:AD:DP:GQ:PL	0/1:40,13:53:99:351,0,711	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240739	.	T	C	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.624;HaplotypeScore=7.7560;MLEAC=1;MLEAF=0.500;MQ=52.44;MQ0=2;MQRankSum=-4.801;QD=4.49;ReadPosRankSum=-1.167;SOR=1.329;ANN=C|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/6|c.1277T>C|p.Leu426Ser|1277/1446|1277/1446|426/481||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1138A>G|||||1138|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-897A>G|||||897|	GT:AD:DP:GQ:PL	0/1:26,12:38:99:199,0,715	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240786	.	C	CG	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=0;MQRankSum=-2.593;QD=19.08;ReadPosRankSum=-0.031;SOR=0.818;ANN=CG|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1186_-1185insC|||||1186|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,CG|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-945_-944insC|||||945|,CG|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/5|c.1285+39_1285+40insG||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:476,0,420	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240815	.	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.63;MQ0=0;MQRankSum=-0.854;QD=9.45;ReadPosRankSum=0.688;SOR=0.223;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1214C>T|||||1214|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-973C>T|||||973|,A|intron_variant|MODIFIER|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|5/5|c.1286-27G>A||||||	GT:AD:DP:GQ:PL	0/1:15,9:24:99:255,0,395	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240850	.	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.98;MQ0=0;MQRankSum=-2.926;QD=13.99;ReadPosRankSum=0.572;SOR=0.859;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|6/6|c.1294G>A|p.Asp432Asn|1294/1446|1294/1446|432/481||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1249C>T|||||1249|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-1008C>T|||||1008|	GT:AD:DP:GQ:PL	0/1:9,10:19:99:294,0,216	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240932	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.56;MQ0=0;MQRankSum=-2.838;QD=4.40;ReadPosRankSum=-0.435;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|6/6|c.1376G>A|p.Arg459His|1376/1446|1376/1446|459/481||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1331C>T|||||1331|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-1090C>T|||||1090|	GT:AD:DP:GQ:PL	0/1:9,3:12:81:81,0,281	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240936	.	A	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=-2.744;QD=4.80;ReadPosRankSum=-0.980;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|6/6|c.1380A>T|p.Glu460Asp|1380/1446|1380/1446|460/481||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1335T>A|||||1335|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-1094T>A|||||1094|	GT:AD:DP:GQ:PL	0/1:8,3:11:81:81,0,251	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240950	.	T	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.38;MQ0=0;MQRankSum=-3.361;QD=7.67;ReadPosRankSum=-1.924;SOR=0.582;ANN=A|missense_variant|MODERATE|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|6/6|c.1394T>A|p.Val465Glu|1394/1446|1394/1446|465/481||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1349A>T|||||1349|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-1108A>T|||||1108|	GT:AD:DP:GQ:PL	0/1:8,5:13:99:128,0,203	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240963	.	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.89;MQ0=0;MQRankSum=-3.719;QD=5.55;ReadPosRankSum=-0.680;SOR=0.836;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|6/6|c.1407A>G|p.Ser469Ser|1407/1446|1407/1446|469/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1362T>C|||||1362|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-1121T>C|||||1121|	GT:AD:DP:GQ:PL	0/1:11,5:16:99:117,0,301	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149147_cov63	240999	.	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.27;MQ0=0;MQRankSum=-3.880;QD=10.71;ReadPosRankSum=-1.068;SOR=0.765;ANN=G|synonymous_variant|LOW|EXON_scaffold149147_cov63_239148_239230|GENE_EXON_scaffold149147_cov63_239148_239230|transcript|Soaet10008272|protein_coding|6/6|c.1443A>G|p.Arg481Arg|1443/1446|1443/1446|481/481||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_237485_239205|GENE_EXON_scaffold149147_cov63_237485_239205|transcript|Soaet10008271|protein_coding||c.-1398T>C|||||1398|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149147_cov63_239624_239842|GENE_EXON_scaffold149147_cov63_239624_239842|transcript|Soaet10008273|protein_coding||c.-1157T>C|||||1157|	GT:AD:DP:GQ:PL	0/1:10,8:18:99:221,0,255	scaffold149147_cov63	GLEAN	mRNA	239148	241002	0.62	+	.	ID=Soaet10008272
scaffold149170_cov63	35756	.	C	T	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=93;Dels=0.00;ExcessHet=3.0103;FS=40.227;HaplotypeScore=5.2409;MLEAC=1;MLEAF=0.500;MQ=55.37;MQ0=0;MQRankSum=-3.495;QD=14.52;ReadPosRankSum=-4.242;SOR=2.588;ANN=T|missense_variant|MODERATE|EXON_scaffold149170_cov63_34985_35251|GENE_EXON_scaffold149170_cov63_34985_35251|transcript|Soaet10008355|protein_coding|2/2|c.379C>T|p.His127Tyr|379/393|379/393|127/130||	GT:AD:DP:GQ:PL	0/1:35,58:93:99:1379,0,859	scaffold149170_cov63	GLEAN	mRNA	34985	35770	0.43	+	.	ID=Soaet10008355
scaffold149170_cov63	35768	.	T	C	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=103;Dels=0.00;ExcessHet=3.0103;FS=26.684;HaplotypeScore=4.5279;MLEAC=1;MLEAF=0.500;MQ=55.96;MQ0=0;MQRankSum=-3.309;QD=14.28;ReadPosRankSum=-2.513;SOR=2.015;ANN=C|stop_lost&splice_region_variant|HIGH|EXON_scaffold149170_cov63_34985_35251|GENE_EXON_scaffold149170_cov63_34985_35251|transcript|Soaet10008355|protein_coding|2/2|c.391T>C|p.Ter131Glnext*?|391/393|391/393|131/130||	GT:AD:DP:GQ:PL	0/1:35,68:103:99:1499,0,853	scaffold149170_cov63	GLEAN	mRNA	34985	35770	0.43	+	.	ID=Soaet10008355
scaffold149170_cov63	63827	.	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.31;SOR=0.749;ANN=C|synonymous_variant|LOW|EXON_scaffold149170_cov63_63792_63931|GENE_EXON_scaffold149170_cov63_63792_63931|transcript|Soaet10008357|protein_coding|1/3|c.36T>C|p.Thr12Thr|36/387|36/387|12/128||	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1194,84,0	scaffold149170_cov63	GLEAN	mRNA	63792	64419	0.61	+	.	ID=Soaet10008357
scaffold149170_cov63	63832	.	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.85;SOR=0.804;ANN=G|missense_variant|MODERATE|EXON_scaffold149170_cov63_63792_63931|GENE_EXON_scaffold149170_cov63_63792_63931|transcript|Soaet10008357|protein_coding|1/3|c.41A>G|p.His14Arg|41/387|41/387|14/128||	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1211,87,0	scaffold149170_cov63	GLEAN	mRNA	63792	64419	0.61	+	.	ID=Soaet10008357
scaffold149170_cov63	63870	.	G	A	1299.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=34.20;SOR=0.798;ANN=A|missense_variant|MODERATE|EXON_scaffold149170_cov63_63792_63931|GENE_EXON_scaffold149170_cov63_63792_63931|transcript|Soaet10008357|protein_coding|1/3|c.79G>A|p.Glu27Lys|79/387|79/387|27/128||	GT:AD:DP:GQ:PL	1/1:0,38:38:96:1328,96,0	scaffold149170_cov63	GLEAN	mRNA	63792	64419	0.61	+	.	ID=Soaet10008357
scaffold149170_cov63	63989	.	C	T	1027.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.12;SOR=0.957;ANN=T|intron_variant|MODIFIER|EXON_scaffold149170_cov63_63792_63931|GENE_EXON_scaffold149170_cov63_63792_63931|transcript|Soaet10008357|protein_coding|1/2|c.140+58C>T||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1056,75,0	scaffold149170_cov63	GLEAN	mRNA	63792	64419	0.61	+	.	ID=Soaet10008357
scaffold149170_cov63	64236	.	G	A	849.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.47;SOR=0.922;ANN=A|intron_variant|MODIFIER|EXON_scaffold149170_cov63_63792_63931|GENE_EXON_scaffold149170_cov63_63792_63931|transcript|Soaet10008357|protein_coding|2/2|c.301+12G>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:878,63,0	scaffold149170_cov63	GLEAN	mRNA	63792	64419	0.61	+	.	ID=Soaet10008357
scaffold149170_cov63	64367	.	T	A	711.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.89;SOR=0.784;ANN=A|stop_gained|HIGH|EXON_scaffold149170_cov63_63792_63931|GENE_EXON_scaffold149170_cov63_63792_63931|transcript|Soaet10008357|protein_coding|3/3|c.335T>A|p.Leu112*|335/387|335/387|112/128||	GT:AD:DP:GQ:PL	1/1:0,21:21:54:740,54,0	scaffold149170_cov63	GLEAN	mRNA	63792	64419	0.61	+	.	ID=Soaet10008357
scaffold149170_cov63	107085	.	G	A	989.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.13;SOR=0.760;ANN=A|missense_variant|MODERATE|EXON_scaffold149170_cov63_107018_107506|GENE_EXON_scaffold149170_cov63_107018_107506|transcript|Soaet10008358|protein_coding|1/1|c.68G>A|p.Cys23Tyr|68/489|68/489|23/162||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:72:1018,72,0	scaffold149170_cov63	GLEAN	mRNA	107018	107506	0.24	+	.	ID=Soaet10008358
scaffold149170_cov63	107107	.	T	G	888.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.18;SOR=0.846;ANN=G|missense_variant|MODERATE|EXON_scaffold149170_cov63_107018_107506|GENE_EXON_scaffold149170_cov63_107018_107506|transcript|Soaet10008358|protein_coding|1/1|c.90T>G|p.Phe30Leu|90/489|90/489|30/162||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:66:917,66,0	scaffold149170_cov63	GLEAN	mRNA	107018	107506	0.24	+	.	ID=Soaet10008358
scaffold149170_cov63	107268	.	G	C	1074.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=32.57;SOR=0.752;ANN=C|missense_variant|MODERATE|EXON_scaffold149170_cov63_107018_107506|GENE_EXON_scaffold149170_cov63_107018_107506|transcript|Soaet10008358|protein_coding|1/1|c.251G>C|p.Ser84Thr|251/489|251/489|84/162||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1103,78,0	scaffold149170_cov63	GLEAN	mRNA	107018	107506	0.24	+	.	ID=Soaet10008358
scaffold149170_cov63	107393	.	C	T	898.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=1;QD=29.96;SOR=0.760;ANN=T|stop_gained|HIGH|EXON_scaffold149170_cov63_107018_107506|GENE_EXON_scaffold149170_cov63_107018_107506|transcript|Soaet10008358|protein_coding|1/1|c.376C>T|p.Arg126*|376/489|376/489|126/162||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:66:927,66,0	scaffold149170_cov63	GLEAN	mRNA	107018	107506	0.24	+	.	ID=Soaet10008358
scaffold149170_cov63	107453	.	G	A	553.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.15;SOR=1.292;ANN=A|missense_variant|MODERATE|EXON_scaffold149170_cov63_107018_107506|GENE_EXON_scaffold149170_cov63_107018_107506|transcript|Soaet10008358|protein_coding|1/1|c.436G>A|p.Gly146Ser|436/489|436/489|146/162||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:582,42,0	scaffold149170_cov63	GLEAN	mRNA	107018	107506	0.24	+	.	ID=Soaet10008358
scaffold149170_cov63	141285	.	T	C	496.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.11;SOR=2.147;ANN=C|synonymous_variant|LOW|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|3/3|c.102A>G|p.Thr34Thr|102/162|102/162|34/53||	GT:AD:DP:GQ:PL	1/1:0,13:13:39:525,39,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141386	.	A	C	734.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=27.21;SOR=0.922;ANN=C|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.82-81T>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:54:763,54,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141394	.	T	C	721.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.76;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.82-89A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:54:750,54,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141473	.	C	T	617.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.42;SOR=1.230;ANN=T|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.82-168G>A||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:48:646,48,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141498	.	C	G	379.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.13;SOR=1.329;ANN=G|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.82-193G>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:408,30,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141693	.	C	T	269.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.98;SOR=0.892;ANN=T|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.81+245G>A||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:21:298,21,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141871	.	A	G	401.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.81+67T>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:430,30,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141877	.	G	A	393.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.13;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.81+61C>T||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:422,30,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141922	.	C	T	436.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.20;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|2/2|c.81+16G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:465,33,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149170_cov63	141985	.	G	A	401.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SOR=0.976;ANN=A|intron_variant|MODIFIER|EXON_scaffold149170_cov63_141225_141305|GENE_EXON_scaffold149170_cov63_141225_141305|transcript|Soaet10008360|protein_coding|1/2|c.52-18C>T||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:430,30,0	scaffold149170_cov63	GLEAN	mRNA	141225	142081	0.96	-	.	ID=Soaet10008360
scaffold149182_cov71	102003	.	G	A	612.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.25;SOR=0.793;ANN=A|synonymous_variant|LOW|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/3|c.177G>A|p.Ala59Ala|177/318|177/318|59/105||	GT:AD:DP:GQ:PL	1/1:0,19:19:45:641,45,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102018	.	C	T	557.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.36;SOR=0.793;ANN=T|synonymous_variant|LOW|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/3|c.192C>T|p.Ser64Ser|192/318|192/318|64/105||	GT:AD:DP:GQ:PL	1/1:0,19:19:42:586,42,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102132	.	T	C	741.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.67;SOR=0.770;ANN=C|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.213+93T>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:54:770,54,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102133	.	G	A	735.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.66;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.213+94G>A||||||	GT:AD:DP:GQ:PL	1/1:0,24:25:54:764,54,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102267	.	C	T	640.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.51;SOR=0.990;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.213+228C>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:48:669,48,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102302	.	C	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;DP=17;Dels=0.00;ExcessHet=3.0103;FS=8.141;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.469;SOR=0.872;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.213+263C>A||||||	GT:AD:DP:GQ:PL	0/1:9,8:17:99:250,0,259	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102385	.	G	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.81;ReadPosRankSum=2.505;SOR=1.085;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-215G>A||||||	GT:AD:DP:GQ:PL	0/1:15,7:22:99:244,0,366	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102392	.	C	T	711.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.35;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-208C>T||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:740,54,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102422	.	G	A	630.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.20;SOR=1.292;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-178G>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:48:659,48,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102445	.	G	A	742.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=30.95;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-155G>A||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:54:771,54,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102457	.	C	T	731.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=28.14;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-143C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:54:760,54,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102515	.	G	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.49;ReadPosRankSum=0.841;SOR=0.412;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-85G>A||||||	GT:AD:DP:GQ:PL	0/1:11,13:25:99:376,0,278	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102530	.	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.744;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.590;SOR=1.402;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-70G>A||||||	GT:AD:DP:GQ:PL	0/1:13,10:23:99:268,0,404	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102540	.	C	T	805.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.57;SOR=1.270;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|1/2|c.214-60C>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:834,60,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102687	.	C	T	453.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.41;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+55C>T||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:36:482,36,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102718	.	T	C	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+86T>C||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102813	.	C	T	434.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=31.05;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+181C>T||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:463,33,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102856	.	G	A	425.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.38;SOR=1.112;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+224G>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:16:33:454,33,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102885	.	T	A	393.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.29;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+253T>A||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:30:422,30,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	102979	.	C	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=0.502;QD=8.67;ReadPosRankSum=-1.144;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+347C>A||||||	GT:AD:DP:GQ:PL	0/1:8,5:13:99:141,0,215	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	103155	.	C	T	482.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=30.17;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+523C>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:511,36,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	103185	.	C	T	446.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.28;ReadPosRankSum=0.513;SOR=0.223;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+553C>T||||||	GT:AD:DP:GQ:PL	1/1:1,16:17:33:475,33,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	103249	.	C	T	442.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.67;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+617C>T||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:33:471,33,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	103442	.	G	A	686.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.22;SOR=0.874;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+810G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:715,54,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	103632	.	A	G	852.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.200;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.34;ReadPosRankSum=1.563;SOR=0.537;ANN=G|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+1000A>G||||||	GT:AD:DP:GQ:PL	0/1:3,32:35:12:880,0,12	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	103690	.	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-1.229;SOR=0.512;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+1058G>A||||||	GT:AD:DP:GQ:PL	0/1:18,12:30:99:315,0,537	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	103719	.	G	C	730.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.10;ReadPosRankSum=-0.818;SOR=0.473;ANN=C|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.246+1087G>C||||||	GT:AD:DP:GQ:PL	0/1:3,25:28:18:759,0,18	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104005	.	G	A	655.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=1;QD=28.51;SOR=0.874;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-1111G>A||||||	GT:AD:DP:GQ:PL	1/1:1,22:23:48:684,48,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104016	.	A	G	615.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.79;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-1100A>G||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:644,45,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104050	.	T	C	637.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.57;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-1066T>C||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:48:666,48,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104059	.	A	G	585.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.54;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-1057A>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:45:614,45,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104321	.	A	G	795.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SOR=1.044;ANN=G|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-795A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:57:824,57,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104324	.	T	G	828.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.73;SOR=1.044;ANN=G|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-792T>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:60:857,60,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104347	.	A	G	967.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.16;SOR=0.746;ANN=G|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-769A>G||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:69:996,69,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104482	.	G	A	811.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.47;SOR=1.136;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-634G>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:63:840,63,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104518	.	A	G	597.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.21;SOR=0.914;ANN=G|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-598A>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:45:626,45,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104686	.	C	A	525.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.86;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-430C>A||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:554,39,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104852	.	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-0.381;QD=20.70;ReadPosRankSum=-0.563;SOR=0.925;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-264G>A||||||	GT:AD:DP:GQ:PL	0/1:5,22:27:99:587,0,114	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	104948	.	G	A	636.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.32;SOR=1.230;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-168G>A||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:48:665,48,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	105015	.	G	A	711.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=28.47;SOR=0.770;ANN=A|intron_variant|MODIFIER|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|2/2|c.247-101G>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:54:740,54,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	105152	.	T	A	767.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.42;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold149182_cov71_101827_102039|GENE_EXON_scaffold149182_cov71_101827_102039|transcript|Soaet10008231|protein_coding|3/3|c.283T>A|p.Phe95Ile|283/318|283/318|95/105||	GT:AD:DP:GQ:PL	1/1:0,28:28:57:796,57,0	scaffold149182_cov71	GLEAN	mRNA	101827	105187	0.92	+	.	ID=Soaet10008231
scaffold149182_cov71	150550	.	T	C	586.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.88;SOR=1.981;ANN=C|synonymous_variant|LOW|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding|1/1|c.321A>G|p.Leu107Leu|321/387|321/387|107/128||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding||c.*3019A>G|||||3019|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*4487A>G|||||4487|	GT:AD:DP:GQ:PL	1/1:0,19:19:45:615,45,0	scaffold149182_cov71	GLEAN	mRNA	150484	150870	0.97	-	.	ID=Soaet10008232
scaffold149182_cov71	150575	.	T	C	539.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.75;SOR=2.179;ANN=C|missense_variant|MODERATE|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding|1/1|c.296A>G|p.Lys99Arg|296/387|296/387|99/128||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding||c.*2994A>G|||||2994|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*4462A>G|||||4462|	GT:AD:DP:GQ:PL	1/1:0,17:17:42:568,42,0	scaffold149182_cov71	GLEAN	mRNA	150484	150870	0.97	-	.	ID=Soaet10008232
scaffold149182_cov71	150593	.	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.325;SOR=0.368;ANN=T|missense_variant|MODERATE|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding|1/1|c.278G>A|p.Arg93Lys|278/387|278/387|93/128||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding||c.*2976G>A|||||2976|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*4444G>A|||||4444|	GT:AD:DP:GQ:PL	0/1:8,4:13:99:136,0,257	scaffold149182_cov71	GLEAN	mRNA	150484	150870	0.97	-	.	ID=Soaet10008232
scaffold149182_cov71	150734	.	G	A	707.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.31;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding|1/1|c.137C>T|p.Ala46Val|137/387|137/387|46/128||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding||c.*2835C>T|||||2835|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*4303C>T|||||4303|	GT:AD:DP:GQ:PL	1/1:0,25:25:51:736,51,0	scaffold149182_cov71	GLEAN	mRNA	150484	150870	0.97	-	.	ID=Soaet10008232
scaffold149182_cov71	150801	.	G	T	823.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.51;SOR=1.302;ANN=T|missense_variant|MODERATE|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding|1/1|c.70C>A|p.Gln24Lys|70/387|70/387|24/128||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding||c.*2768C>A|||||2768|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*4236C>A|||||4236|	GT:AD:DP:GQ:PL	1/1:0,27:27:60:852,60,0	scaffold149182_cov71	GLEAN	mRNA	150484	150870	0.97	-	.	ID=Soaet10008232
scaffold149182_cov71	153581	.	C	G	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=0.320;SOR=0.704;ANN=G|missense_variant|MODERATE|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding|2/2|c.276G>C|p.Trp92Cys|276/288|276/288|92/95||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding||c.-2711G>C|||||2711|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*1456G>C|||||1456|	GT:AD:DP:GQ:PL	0/1:14,21:35:99:527,0,295	scaffold149182_cov71	GLEAN	mRNA	153569	153960	0.79	-	.	ID=Soaet10008234
scaffold149182_cov71	153879	.	T	C	921.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.81;SOR=0.957;ANN=C|missense_variant|MODERATE|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding|1/2|c.82A>G|p.Thr28Ala|82/288|82/288|28/95||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding||c.-3009A>G|||||3009|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*1158A>G|||||1158|	GT:AD:DP:GQ:PL	1/1:0,32:32:66:950,66,0	scaffold149182_cov71	GLEAN	mRNA	153569	153960	0.79	-	.	ID=Soaet10008234
scaffold149182_cov71	153881	.	G	A	876.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding|1/2|c.80C>T|p.Ala27Val|80/288|80/288|27/95||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding||c.-3011C>T|||||3011|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|downstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding||c.*1156C>T|||||1156|	GT:AD:DP:GQ:PL	1/1:0,33:33:63:905,63,0	scaffold149182_cov71	GLEAN	mRNA	153569	153960	0.79	-	.	ID=Soaet10008234
scaffold149182_cov71	155103	.	T	C	6144.77	.	AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1998;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=32.34;SOR=2.858;ANN=C|synonymous_variant|LOW|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding|1/1|c.216A>G|p.Leu72Leu|216/282|216/282|72/93||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding||c.-4233A>G|||||4233|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding||c.-1143A>G|||||1143|	GT:AD:DP:GQ:PL	1/1:0,190:191:99:6173,445,0	scaffold149182_cov71	GLEAN	mRNA	155037	155318	0.85	-	.	ID=Soaet10008236
scaffold149182_cov71	155152	.	G	T	332.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=33.28;SOR=4.804;ANN=T|missense_variant|MODERATE|EXON_scaffold149182_cov71_155037_155318|GENE_EXON_scaffold149182_cov71_155037_155318|transcript|Soaet10008236|protein_coding|1/1|c.167C>A|p.Ala56Glu|167/282|167/282|56/93||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_150484_150870|GENE_EXON_scaffold149182_cov71_150484_150870|transcript|Soaet10008232|protein_coding||c.-4282C>A|||||4282|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149182_cov71_153569_153710|GENE_EXON_scaffold149182_cov71_153569_153710|transcript|Soaet10008234|protein_coding||c.-1192C>A|||||1192|	GT:AD:DP:GQ:PL	1/1:0,10:10:30:361,30,0	scaffold149182_cov71	GLEAN	mRNA	155037	155318	0.85	-	.	ID=Soaet10008236
scaffold149193_cov59	54691	.	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.524;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149193_cov59_53272_54091|GENE_EXON_scaffold149193_cov59_53272_54091|transcript|Soaet10008746|protein_coding|1/1|c.581+588C>T||||||	GT:AD:DP:GQ:PL	0/1:2,3:5:72:73,0,72	scaffold149193_cov59	GLEAN	mRNA	53272	55859	1.00	-	.	ID=Soaet10008746
scaffold149193_cov59	108875	.	T	G	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.523;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.22;ReadPosRankSum=0.063;SOR=0.531;ANN=G|synonymous_variant|LOW|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|4/4|c.963A>C|p.Pro321Pro|963/1335|963/1335|321/444||	GT:AD:DP:GQ:PL	0/1:10,21:31:99:500,0,275	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	109103	.	TGTATATA	T	1068.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.94;RPA=2,1;RU=GTATATA;ReadPosRankSum=0.264;SOR=0.250;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|3/3|c.870+9_870+15delTATATAC||||||	GT:AD:DP:GQ:PL	0/1:5,12:18:99:1106,0,388	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	109502	.	C	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.31;ReadPosRankSum=-1.014;SOR=0.601;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|2/3|c.793+198G>A||||||	GT:AD:DP:GQ:PL	0/1:14,24:38:99:686,0,359	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	109521	.	C	T	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.106;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.48;ReadPosRankSum=-0.891;SOR=1.202;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|2/3|c.793+179G>A||||||	GT:AD:DP:GQ:PL	0/1:13,24:37:99:675,0,363	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	109529	.	C	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.326;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.76;ReadPosRankSum=0.567;SOR=1.454;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|2/3|c.793+171G>A||||||	GT:AD:DP:GQ:PL	0/1:13,21:34:99:598,0,379	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	109552	.	A	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.984;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.45;ReadPosRankSum=1.742;SOR=1.003;ANN=C|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|2/3|c.793+148T>G||||||	GT:AD:DP:GQ:PL	0/1:13,22:35:99:534,0,385	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	109623	.	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DP=29;Dels=0.00;ExcessHet=3.0103;FS=8.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.03;ReadPosRankSum=-0.321;SOR=0.278;ANN=A|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|2/3|c.793+77C>T||||||	GT:AD:DP:GQ:PL	0/1:10,19:29:99:551,0,336	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	109664	.	CA	C	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DP=30;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.58;RPA=7,6;RU=A;ReadPosRankSum=-0.562;SOR=0.801;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|2/3|c.793+35delT||||||	GT:AD:DP:GQ:PL	0/1:11,18:30:99:547,0,287	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	110352	.	C	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.220;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-0.133;SOR=1.049;ANN=G|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|1/3|c.206-65G>C||||||	GT:AD:DP:GQ:PL	0/1:14,18:32:99:489,0,395	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	110354	.	C	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.220;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.076;SOR=1.049;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|1/3|c.206-67G>A||||||	GT:AD:DP:GQ:PL	0/1:14,18:32:99:485,0,400	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	110492	.	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.29;ReadPosRankSum=1.003;SOR=0.446;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|1/3|c.206-205G>A||||||	GT:AD:DP:GQ:PL	0/1:12,8:20:99:174,0,335	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	110583	.	TAAC	T	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.42;RPA=2,1;RU=AAC;ReadPosRankSum=1.304;SOR=1.002;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|1/3|c.206-299_206-297delGTT||||||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:382,0,684	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	110645	.	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.163;SOR=0.631;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_108503_108967|GENE_EXON_scaffold149193_cov59_108503_108967|transcript|Soaet10008750|protein_coding|1/3|c.205+258G>A||||||	GT:AD:DP:GQ:PL	0/1:12,16:28:99:400,0,321	scaffold149193_cov59	GLEAN	mRNA	108503	111107	0.99	-	.	ID=Soaet10008750
scaffold149193_cov59	128179	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.135;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.18;ReadPosRankSum=1.932;SOR=1.286;ANN=T|missense_variant|MODERATE|EXON_scaffold149193_cov59_128103_128207|GENE_EXON_scaffold149193_cov59_128103_128207|transcript|Soaet10008751|protein_coding|1/6|c.77C>T|p.Pro26Leu|77/714|77/714|26/237||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149193_cov59_132198_133700|GENE_EXON_scaffold149193_cov59_132198_133700|transcript|Soaet10008752|protein_coding||c.-4019C>T|||||4019|	GT:AD:DP:GQ:PL	0/1:26,12:38:99:301,0,723	scaffold149193_cov59	GLEAN	mRNA	128103	129616	0.77	+	.	ID=Soaet10008751
scaffold149193_cov59	128219	.	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.52;MQ0=2;MQRankSum=-1.416;QD=5.40;ReadPosRankSum=0.409;SOR=1.091;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149193_cov59_132198_133700|GENE_EXON_scaffold149193_cov59_132198_133700|transcript|Soaet10008752|protein_coding||c.-3979C>T|||||3979|,T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_128103_128207|GENE_EXON_scaffold149193_cov59_128103_128207|transcript|Soaet10008751|protein_coding|1/5|c.105+12C>T||||||	GT:AD:DP:GQ:PL	0/1:24,13:37:99:228,0,700	scaffold149193_cov59	GLEAN	mRNA	128103	129616	0.77	+	.	ID=Soaet10008751
scaffold149193_cov59	128888	.	C	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.621;SOR=0.815;ANN=A|synonymous_variant|LOW|EXON_scaffold149193_cov59_128103_128207|GENE_EXON_scaffold149193_cov59_128103_128207|transcript|Soaet10008751|protein_coding|4/6|c.250C>A|p.Arg84Arg|250/714|250/714|84/237||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149193_cov59_132198_133700|GENE_EXON_scaffold149193_cov59_132198_133700|transcript|Soaet10008752|protein_coding||c.-3310C>A|||||3310|	GT:AD:DP:GQ:PL	0/1:13,18:31:99:412,0,352	scaffold149193_cov59	GLEAN	mRNA	128103	129616	0.77	+	.	ID=Soaet10008751
scaffold149193_cov59	150218	.	C	A	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.30;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149193_cov59_145243_146129|GENE_EXON_scaffold149193_cov59_145243_146129|transcript|Soaet10008754|protein_coding|1/10|c.192-1447G>T||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold149193_cov59	GLEAN	mRNA	145243	151911	1.00	-	.	ID=Soaet10008754
scaffold149193_cov59	151657	.	G	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.58;ReadPosRankSum=0.935;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold149193_cov59_145243_146129|GENE_EXON_scaffold149193_cov59_145243_146129|transcript|Soaet10008754|protein_coding|1/10|c.191+64C>G||||||	GT:AD:DP:GQ:PL	0/1:2,13:15:51:337,0,51	scaffold149193_cov59	GLEAN	mRNA	145243	151911	1.00	-	.	ID=Soaet10008754
scaffold149193_cov59	197745	.	T	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.545;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-1.106;SOR=1.911;ANN=G|intron_variant|MODIFIER|EXON_scaffold149193_cov59_197420_197708|GENE_EXON_scaffold149193_cov59_197420_197708|transcript|Soaet10008757|protein_coding|1/4|c.289+37T>G||||||	GT:AD:DP:GQ:PL	0/1:16,6:22:99:196,0,422	scaffold149193_cov59	GLEAN	mRNA	197420	201364	1.00	+	.	ID=Soaet10008757
scaffold149193_cov59	197762	.	C	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.524;SOR=1.051;ANN=A|intron_variant|MODIFIER|EXON_scaffold149193_cov59_197420_197708|GENE_EXON_scaffold149193_cov59_197420_197708|transcript|Soaet10008757|protein_coding|1/4|c.289+54C>A||||||	GT:AD:DP:GQ:PL	0/1:15,5:20:99:113,0,453	scaffold149193_cov59	GLEAN	mRNA	197420	201364	1.00	+	.	ID=Soaet10008757
scaffold149193_cov59	199373	.	A	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.75;ReadPosRankSum=-0.687;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold149193_cov59_197420_197708|GENE_EXON_scaffold149193_cov59_197420_197708|transcript|Soaet10008757|protein_coding|2/4|c.513+167A>G||||||	GT:AD:DP:GQ:PL	0/1:4,5:9:68:188,0,68	scaffold149193_cov59	GLEAN	mRNA	197420	201364	1.00	+	.	ID=Soaet10008757
scaffold149193_cov59	200548	.	G	A	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=1;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.188;SOR=1.928;ANN=A|intron_variant|MODIFIER|EXON_scaffold149193_cov59_197420_197708|GENE_EXON_scaffold149193_cov59_197420_197708|transcript|Soaet10008757|protein_coding|4/4|c.1209+19G>A||||||	GT:AD:DP:GQ:PL	0/1:18,11:29:99:353,0,408	scaffold149193_cov59	GLEAN	mRNA	197420	201364	1.00	+	.	ID=Soaet10008757
scaffold149193_cov59	200630	.	G	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=0;MQRankSum=-0.524;QD=9.48;ReadPosRankSum=-0.108;SOR=0.527;ANN=T|intron_variant|MODIFIER|EXON_scaffold149193_cov59_197420_197708|GENE_EXON_scaffold149193_cov59_197420_197708|transcript|Soaet10008757|protein_coding|4/4|c.1209+101G>T||||||	GT:AD:DP:GQ:PL	0/1:4,6:10:99:123,0,139	scaffold149193_cov59	GLEAN	mRNA	197420	201364	1.00	+	.	ID=Soaet10008757
scaffold149193_cov59	200755	.	A	G	174.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.48;ReadPosRankSum=-1.036;SOR=0.525;ANN=G|intron_variant|MODIFIER|EXON_scaffold149193_cov59_197420_197708|GENE_EXON_scaffold149193_cov59_197420_197708|transcript|Soaet10008757|protein_coding|4/4|c.1210-154A>G||||||	GT:AD:DP:GQ:PL	0/1:1,9:10:24:203,0,24	scaffold149193_cov59	GLEAN	mRNA	197420	201364	1.00	+	.	ID=Soaet10008757
scaffold149193_cov59	212983	.	TC	T	158.8	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;QD=26.47;SOR=1.329;ANN=T|frameshift_variant&splice_region_variant|HIGH|EXON_scaffold149193_cov59_212786_212926|GENE_EXON_scaffold149193_cov59_212786_212926|transcript|Soaet10008758|protein_coding|3/4|c.104delG|p.Arg35fs|104/288|104/288|35/95||;LOF=(EXON_scaffold149193_cov59_212786_212926|GENE_EXON_scaffold149193_cov59_212786_212926|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,6:6:18:196,18,0	scaffold149193_cov59	GLEAN	mRNA	212786	213154	0.12	-	.	ID=Soaet10008758
scaffold149212_cov62	166910	.	A	C	519.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.57;SOR=0.804;ANN=C|missense_variant|MODERATE|EXON_scaffold149212_cov62_166708_166917|GENE_EXON_scaffold149212_cov62_166708_166917|transcript|Soaet10008863|protein_coding|1/1|c.8T>G|p.Ile3Ser|8/210|8/210|3/69||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149212_cov62_167285_167394|GENE_EXON_scaffold149212_cov62_167285_167394|transcript|Soaet10008864|protein_coding||c.*375T>G|||||375|	GT:AD:DP:GQ:PL	1/1:0,17:17:39:548,39,0	scaffold149212_cov62	GLEAN	mRNA	166708	166917	0.97	-	.	ID=Soaet10008863
scaffold149212_cov62	167353	.	C	T	441.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.99;SOR=0.804;ANN=T|missense_variant|MODERATE|EXON_scaffold149212_cov62_167285_167394|GENE_EXON_scaffold149212_cov62_167285_167394|transcript|Soaet10008864|protein_coding|2/2|c.154G>A|p.Asp52Asn|154/222|154/222|52/73||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149212_cov62_166708_166917|GENE_EXON_scaffold149212_cov62_166708_166917|transcript|Soaet10008863|protein_coding||c.-436G>A|||||436|	GT:AD:DP:GQ:PL	1/1:0,17:17:33:470,33,0	scaffold149212_cov62	GLEAN	mRNA	167285	167609	1.00	-	.	ID=Soaet10008864
scaffold149212_cov62	217889	.	C	T	815.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.21;SOR=1.302;ANN=T|intron_variant|MODIFIER|EXON_scaffold149212_cov62_215167_217428|GENE_EXON_scaffold149212_cov62_215167_217428|transcript|Soaet10008865|protein_coding|2/10|c.2350-191C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:844,63,0	scaffold149212_cov62	GLEAN	mRNA	215167	221796	0.61	+	.	ID=Soaet10008865
scaffold149212_cov62	220505	.	A	T	728.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.70;SOR=0.784;ANN=T|intron_variant|MODIFIER|EXON_scaffold149212_cov62_215167_217428|GENE_EXON_scaffold149212_cov62_215167_217428|transcript|Soaet10008865|protein_coding|7/10|c.3768+68A>T||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:54:757,54,0	scaffold149212_cov62	GLEAN	mRNA	215167	221796	0.61	+	.	ID=Soaet10008865
scaffold149212_cov62	220914	.	C	T	679.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=30.90;SOR=1.329;ANN=T|synonymous_variant|LOW|EXON_scaffold149212_cov62_215167_217428|GENE_EXON_scaffold149212_cov62_215167_217428|transcript|Soaet10008865|protein_coding|8/11|c.4011C>T|p.Phe1337Phe|4011/4491|4011/4491|1337/1496||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:708,51,0	scaffold149212_cov62	GLEAN	mRNA	215167	221796	0.61	+	.	ID=Soaet10008865
scaffold149212_cov62	231052	.	A	G	991.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;QD=33.06;SOR=0.826;ANN=G|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|2/7|c.279+375A>G||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:72:1020,72,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	231104	.	ACATCCC	A	2280.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=28.22;RPA=2,1;RU=CATCCC;SOR=1.179;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|2/7|c.280-416_280-411delCATCCC||||||	GT:AD:DP:GQ:PL	1/1:0,28:31:84:2318,84,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	231852	.	C	T	901.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.68;SOR=0.846;ANN=T|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|3/7|c.528+83C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:69:930,69,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	232065	.	A	G	602.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.72;SOR=0.793;ANN=G|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|3/7|c.528+296A>G||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:45:631,45,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	232411	.	T	C	798.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.28;SOR=0.859;ANN=C|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|3/7|c.529-53T>C||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:60:827,60,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	232433	.	A	T	836.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.87;SOR=1.051;ANN=T|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|3/7|c.529-31A>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:63:865,63,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	232655	.	G	GTAC	1477.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.46;SOR=0.770;ANN=GTAC|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|4/7|c.672+48_672+49insTAC||||||	GT:AD:DP:GQ:PL	1/1:0,25:26:75:1515,75,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	232989	.	CTCT	C	1169.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.36;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|5/7|c.840+44_840+46delTCT||||||	GT:AD:DP:GQ:PL	1/1:0,19:20:57:1207,57,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	233022	.	A	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-1.296;SOR=0.368;ANN=C|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|5/7|c.840+76A>C||||||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:233,0,217	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	233278	.	A	T	562.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.62;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|5/7|c.840+332A>T||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:42:591,42,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	233539	.	T	TG	1511.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.85;MQ0=0;QD=31.23;RPA=1,2;RU=G;SOR=0.798;STR;ANN=TG|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|5/7|c.841-266_841-265insG||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1549,113,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149212_cov62	233568	.	T	C	1152.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=34.93;SOR=0.752;ANN=C|intron_variant|MODIFIER|EXON_scaffold149212_cov62_230282_230365|GENE_EXON_scaffold149212_cov62_230282_230365|transcript|Soaet10008866|protein_coding|5/7|c.841-237T>C||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:84:1181,84,0	scaffold149212_cov62	GLEAN	mRNA	230282	235106	0.78	+	.	ID=Soaet10008866
scaffold149229_cov62	3182	.	G	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.552;HaplotypeScore=46.9216;MLEAC=1;MLEAF=0.500;MQ=49.59;MQ0=3;MQRankSum=-1.742;QD=10.73;ReadPosRankSum=-0.765;SOR=1.075;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1510C>G|p.His504Asp|1510/1746|1510/1746|504/581||	GT:AD:DP:GQ:PL	0/1:10,24:34:99:393,0,281	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3461	.	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=1;MQRankSum=-4.150;QD=1.99;ReadPosRankSum=-1.352;SOR=1.567;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1231T>C|p.Ser411Pro|1231/1746|1231/1746|411/581||	GT:AD:DP:GQ:PL	0/1:15,5:20:68:68,0,467	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3524	.	T	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-0.605;SOR=0.412;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1168A>G|p.Ile390Val|1168/1746|1168/1746|390/581||	GT:AD:DP:GQ:PL	0/1:10,10:20:99:258,0,276	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3541	.	G	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.309;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-1.702;QD=13.53;ReadPosRankSum=-5.518;SOR=1.069;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1151C>G|p.Ala384Gly|1151/1746|1151/1746|384/581||	GT:AD:DP:GQ:PL	0/1:19,20:39:99:556,0,436	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3558	.	C	A	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=-1.811;QD=12.85;ReadPosRankSum=-2.357;SOR=0.776;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1134G>T|p.Ala378Ala|1134/1746|1134/1746|378/581||	GT:AD:DP:GQ:PL	0/1:18,23:41:99:555,0,499	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3571	.	A	C	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=-1.913;QD=14.07;ReadPosRankSum=-1.397;SOR=0.678;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1121T>G|p.Met374Arg|1121/1746|1121/1746|374/581||	GT:AD:DP:GQ:PL	0/1:17,25:42:99:619,0,493	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3577	.	C	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=-1.799;QD=14.79;ReadPosRankSum=-0.982;SOR=0.668;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1115G>A|p.Gly372Asp|1115/1746|1115/1746|372/581||	GT:AD:DP:GQ:PL	0/1:15,25:40:99:620,0,447	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3578	.	C	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=-1.799;QD=14.79;ReadPosRankSum=-0.968;SOR=0.668;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1114G>A|p.Gly372Ser|1114/1746|1114/1746|372/581||	GT:AD:DP:GQ:PL	0/1:15,25:40:99:620,0,451	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3586	.	T	C	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=-1.799;QD=14.82;ReadPosRankSum=0.741;SOR=0.668;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1106A>G|p.Glu369Gly|1106/1746|1106/1746|369/581||	GT:AD:DP:GQ:PL	0/1:15,25:40:99:621,0,342	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3587	.	C	G	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=-1.799;QD=14.84;ReadPosRankSum=1.069;SOR=0.668;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1105G>C|p.Glu369Gln|1105/1746|1105/1746|369/581||	GT:AD:DP:GQ:PL	0/1:15,25:40:99:622,0,382	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3590	.	G	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7467;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=-1.799;QD=14.79;ReadPosRankSum=1.733;SOR=0.668;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.1102C>G|p.Gln368Glu|1102/1746|1102/1746|368/581||	GT:AD:DP:GQ:PL	0/1:15,25:40:99:620,0,388	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3810	.	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.923;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=46.90;MQ0=3;MQRankSum=-4.362;QD=5.63;ReadPosRankSum=0.958;SOR=2.064;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.882C>T|p.His294His|882/1746|882/1746|294/581||	GT:AD:DP:GQ:PL	0/1:13,12:25:99:169,0,321	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3974	.	T	C	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.465;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.68;MQ0=0;MQRankSum=-4.704;QD=1.16;ReadPosRankSum=0.071;SOR=1.819;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.718A>G|p.Asn240Asp|718/1746|718/1746|240/581||	GT:AD:DP:GQ:PL	0/1:19,5:24:56:56,0,536	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	3976	.	A	G	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.693;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.44;MQ0=0;MQRankSum=-4.594;QD=1.21;ReadPosRankSum=0.112;SOR=1.981;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.716T>C|p.Val239Ala|716/1746|716/1746|239/581||	GT:AD:DP:GQ:PL	0/1:18,5:23:56:56,0,537	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4014	.	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;DP=25;Dels=0.00;ExcessHet=3.0103;FS=5.653;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.38;MQ0=0;MQRankSum=-4.797;QD=3.79;ReadPosRankSum=0.191;SOR=2.973;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.678C>T|p.Asp226Asp|678/1746|678/1746|226/581||	GT:AD:DP:GQ:PL	0/1:19,6:25:99:123,0,529	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4026	.	A	C	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.817;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-4.488;QD=1.08;ReadPosRankSum=0.000;SOR=1.954;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.666T>G|p.Pro222Pro|666/1746|666/1746|222/581||	GT:AD:DP:GQ:PL	0/1:19,3:22:52:52,0,505	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4027	.	G	A	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.817;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-4.488;QD=0.99;ReadPosRankSum=0.096;SOR=1.954;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.665C>T|p.Pro222Leu|665/1746|665/1746|222/581||	GT:AD:DP:GQ:PL	0/1:19,3:22:50:50,0,546	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4034	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-4.488;QD=1.13;ReadPosRankSum=0.574;SOR=2.303;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.658C>T|p.Arg220Cys|658/1746|658/1746|220/581||	GT:AD:DP:GQ:PL	0/1:19,3:22:53:53,0,506	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4037	.	G	A	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;DP=24;Dels=0.00;ExcessHet=3.0103;FS=6.520;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=-4.707;QD=0.91;ReadPosRankSum=0.962;SOR=2.824;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.655C>T|p.Arg219Cys|655/1746|655/1746|219/581||	GT:AD:DP:GQ:PL	0/1:21,3:24:50:50,0,556	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4042	.	T	C	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DP=24;Dels=0.00;ExcessHet=3.0103;FS=6.520;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=-4.707;QD=0.91;ReadPosRankSum=0.787;SOR=2.824;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.650A>G|p.Glu217Gly|650/1746|650/1746|217/581||	GT:AD:DP:GQ:PL	0/1:21,3:24:50:50,0,523	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4043	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=23;Dels=0.00;ExcessHet=3.0103;FS=6.397;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=-4.599;QD=0.95;ReadPosRankSum=0.640;SOR=2.833;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.649G>A|p.Glu217Lys|649/1746|649/1746|217/581||	GT:AD:DP:GQ:PL	0/1:20,3:23:50:50,0,531	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4051	.	G	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.483;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=-3.634;QD=2.30;ReadPosRankSum=-0.196;SOR=1.833;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.641C>A|p.Ala214Asp|641/1746|641/1746|214/581||	GT:AD:DP:GQ:PL	0/1:21,5:26:88:88,0,568	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4059	.	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.066;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=-3.549;QD=2.55;ReadPosRankSum=0.238;SOR=1.385;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.633C>T|p.Leu211Leu|633/1746|633/1746|211/581||	GT:AD:DP:GQ:PL	0/1:20,5:25:92:92,0,534	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4064	.	T	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.965;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-3.717;QD=1.88;ReadPosRankSum=0.719;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.628A>T|p.Met210Leu|628/1746|628/1746|210/581||	GT:AD:DP:GQ:PL	0/1:22,5:28:79:79,0,683	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4066	.	A	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-3.797;QD=1.85;ReadPosRankSum=1.081;SOR=1.091;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.626T>A|p.Leu209Gln|626/1746|626/1746|209/581||	GT:AD:DP:GQ:PL	0/1:23,5:28:80:80,0,695	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4174	.	G	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-6.224;QD=7.35;ReadPosRankSum=-2.948;SOR=0.688;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.518C>G|p.Thr173Arg|518/1746|518/1746|173/581||	GT:AD:DP:GQ:PL	0/1:38,19:57:99:447,0,1059	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4179	.	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=-6.357;QD=6.44;ReadPosRankSum=-1.881;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.513C>T|p.Gly171Gly|513/1746|513/1746|171/581||	GT:AD:DP:GQ:PL	0/1:40,19:59:99:408,0,1108	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4186	.	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4091;MLEAC=1;MLEAF=0.500;MQ=56.61;MQ0=0;MQRankSum=-6.291;QD=7.24;ReadPosRankSum=-0.259;SOR=0.643;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.506G>A|p.Arg169Gln|506/1746|506/1746|169/581||	GT:AD:DP:GQ:PL	0/1:39,19:58:99:448,0,1044	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4193	.	T	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7384;MLEAC=1;MLEAF=0.500;MQ=56.73;MQ0=0;MQRankSum=-6.537;QD=7.62;ReadPosRankSum=0.295;SOR=0.557;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.499A>G|p.Met167Val|499/1746|499/1746|167/581||	GT:AD:DP:GQ:PL	0/1:39,22:61:99:493,0,989	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4229	.	G	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.043;HaplotypeScore=21.2632;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=-6.256;QD=9.03;ReadPosRankSum=3.405;SOR=0.473;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.463C>A|p.Leu155Ile|463/1746|463/1746|155/581||	GT:AD:DP:GQ:PL	0/1:33,24:57:99:543,0,988	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4253	.	G	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8489;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=0;MQRankSum=-5.284;QD=5.19;ReadPosRankSum=1.954;SOR=0.511;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.439C>G|p.Pro147Ala|439/1746|439/1746|147/581||	GT:AD:DP:GQ:PL	0/1:34,13:47:99:272,0,1063	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4283	.	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4091;MLEAC=1;MLEAF=0.500;MQ=57.19;MQ0=0;MQRankSum=-5.527;QD=7.07;ReadPosRankSum=1.486;SOR=0.657;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.409G>A|p.Glu137Lys|409/1746|409/1746|137/581||	GT:AD:DP:GQ:PL	0/1:37,15:54:99:396,0,1058	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4284	.	T	G	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4091;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=0;MQRankSum=-5.598;QD=6.86;ReadPosRankSum=1.532;SOR=0.614;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.408A>C|p.Pro136Pro|408/1746|408/1746|136/581||	GT:AD:DP:GQ:PL	0/1:38,15:53:99:392,0,1108	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4290	.	T	G	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4091;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-5.455;QD=7.23;ReadPosRankSum=1.210;SOR=0.512;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.402A>C|p.Glu134Asp|402/1746|402/1746|134/581||	GT:AD:DP:GQ:PL	0/1:36,15:51:99:397,0,1048	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4295	.	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-5.455;QD=7.13;ReadPosRankSum=0.951;SOR=0.512;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.397G>A|p.Val133Met|397/1746|397/1746|133/581||	GT:AD:DP:GQ:PL	0/1:36,15:51:99:392,0,1041	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4322	.	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.654;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=0;MQRankSum=-6.243;QD=8.76;ReadPosRankSum=-0.841;SOR=0.897;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.370A>G|p.Lys124Glu|370/1746|370/1746|124/581||	GT:AD:DP:GQ:PL	0/1:33,17:50:99:466,0,1057	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4329	.	C	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.126;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=0;MQRankSum=-6.640;QD=9.82;ReadPosRankSum=-1.350;SOR=0.572;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.363G>A|p.Met121Ile|363/1746|363/1746|121/581||	GT:AD:DP:GQ:PL	0/1:33,19:52:99:539,0,962	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4344	.	C	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.30;MQ0=0;MQRankSum=-6.617;QD=9.65;ReadPosRankSum=-2.108;SOR=0.260;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.348G>C|p.Lys116Asn|348/1746|348/1746|116/581||	GT:AD:DP:GQ:PL	0/1:32,20:52:99:530,0,1045	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4349	.	C	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.893;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-6.672;QD=10.07;ReadPosRankSum=-2.238;SOR=0.397;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.343G>A|p.Val115Ile|343/1746|343/1746|115/581||	GT:AD:DP:GQ:PL	0/1:32,21:53:99:562,0,1024	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4380	.	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.096;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=0;MQRankSum=-6.277;QD=10.03;ReadPosRankSum=-0.642;SOR=0.438;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.312C>T|p.Thr104Thr|312/1746|312/1746|104/581||	GT:AD:DP:GQ:PL	0/1:30,21:51:99:540,0,967	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4406	.	G	A	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.202;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=56.05;MQ0=0;MQRankSum=-6.298;QD=8.65;ReadPosRankSum=2.089;SOR=0.434;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.286C>T|p.Leu96Phe|286/1746|286/1746|96/581||	GT:AD:DP:GQ:PL	0/1:31,16:47:99:435,0,952	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4410	.	ATTGTGCTCATCCTT	A	2455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DP=46;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-6.231;QD=11.44;ReadPosRankSum=2.685;SOR=0.593;ANN=A|frameshift_variant|HIGH|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.268_281delAAGGATGAGCACAA|p.Lys90fs|281/1746|268/1746|90/581||;LOF=(EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|1|1.00)	GT:AD:DP:GQ:PL	0/1:31,15:46:99:2493,0,4974	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4444	.	C	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=53.45;MQ0=1;MQRankSum=-5.280;QD=9.04;ReadPosRankSum=0.897;SOR=0.674;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.248G>T|p.Arg83Ile|248/1746|248/1746|83/581||	GT:AD:DP:GQ:PL	0/1:31,17:48:99:462,0,731	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4456	.	C	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=52.87;MQ0=1;MQRankSum=-4.901;QD=8.91;ReadPosRankSum=-0.558;SOR=0.839;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.236G>A|p.Arg79His|236/1746|236/1746|79/581||	GT:AD:DP:GQ:PL	0/1:30,18:48:99:456,0,809	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4486	.	C	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.237;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=1;MQRankSum=-3.961;QD=8.83;ReadPosRankSum=-3.220;SOR=0.139;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.206G>T|p.Arg69Met|206/1746|206/1746|69/581||	GT:AD:DP:GQ:PL	0/1:24,18:42:99:399,0,762	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4491	.	C	A	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=0;MQRankSum=-3.036;QD=7.60;ReadPosRankSum=-2.001;SOR=0.536;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.201G>T|p.Gln67His|201/1746|201/1746|67/581||	GT:AD:DP:GQ:PL	0/1:25,13:38:99:317,0,773	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4493	.	G	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.591;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.82;MQ0=0;MQRankSum=-3.615;QD=7.91;ReadPosRankSum=-2.492;SOR=0.245;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.199C>A|p.Gln67Lys|199/1746|199/1746|67/581||	GT:AD:DP:GQ:PL	0/1:23,14:37:99:321,0,796	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4494	.	G	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.432;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=53.82;MQ0=0;MQRankSum=-3.615;QD=8.53;ReadPosRankSum=-2.507;SOR=0.245;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.198C>A|p.Ala66Ala|198/1746|198/1746|66/581||	GT:AD:DP:GQ:PL	0/1:23,14:37:99:344,0,781	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4507	.	A	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.563;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.82;MQ0=0;MQRankSum=-3.526;QD=7.80;ReadPosRankSum=-1.549;SOR=0.202;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.185T>G|p.Leu62Trp|185/1746|185/1746|62/581||	GT:AD:DP:GQ:PL	0/1:23,13:36:99:309,0,753	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4525	.	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.26;MQ0=0;MQRankSum=-2.072;QD=1.74;ReadPosRankSum=0.821;SOR=0.582;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.167C>G|p.Thr56Ser|167/1746|167/1746|56/581||	GT:AD:DP:GQ:PL	0/1:24,4:28:77:77,0,780	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4563	.	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=53.76;MQ0=0;MQRankSum=-3.547;QD=7.90;ReadPosRankSum=0.682;SOR=0.674;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.129T>C|p.Tyr43Tyr|129/1746|129/1746|43/581||	GT:AD:DP:GQ:PL	0/1:20,11:31:99:273,0,617	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4567	.	G	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.16;MQ0=0;MQRankSum=-3.120;QD=8.32;ReadPosRankSum=0.766;SOR=0.674;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.125C>G|p.Thr42Arg|125/1746|125/1746|42/581||	GT:AD:DP:GQ:PL	0/1:20,11:31:99:286,0,593	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4572	.	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-2.994;QD=8.29;ReadPosRankSum=1.185;SOR=0.735;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.120C>T|p.His40His|120/1746|120/1746|40/581||	GT:AD:DP:GQ:PL	0/1:19,11:30:99:277,0,544	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4606	.	C	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7313;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-1.923;QD=0.64;ReadPosRankSum=1.430;SOR=0.392;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.86G>A|p.Cys29Tyr|86/1746|86/1746|29/581||	GT:AD:DP:GQ:PL	0/1:14,2:16:38:38,0,409	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4607	.	A	G	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6978;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-1.923;QD=0.64;ReadPosRankSum=1.590;SOR=0.392;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.85T>C|p.Cys29Arg|85/1746|85/1746|29/581||	GT:AD:DP:GQ:PL	0/1:14,2:16:38:38,0,409	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	4638	.	A	G	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=-1.503;QD=1.08;ReadPosRankSum=0.430;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_2946_4691|GENE_EXON_scaffold149229_cov62_2946_4691|transcript|Soaet10008908|protein_coding|1/1|c.54T>C|p.Tyr18Tyr|54/1746|54/1746|18/581||	GT:AD:DP:GQ:PL	0/1:10,2:12:41:41,0,269	scaffold149229_cov62	GLEAN	mRNA	2946	4691	1.00	-	.	ID=Soaet10008908
scaffold149229_cov62	10354	.	A	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=3;MQRankSum=-5.218;QD=11.40;ReadPosRankSum=-3.015;SOR=1.532;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.509T>G|p.Leu170Arg|509/582|509/582|170/193||	GT:AD:DP:GQ:PL	0/1:17,20:37:99:450,0,515	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10362	.	A	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=46.27;MQ0=2;MQRankSum=-5.324;QD=11.70;ReadPosRankSum=-3.023;SOR=0.836;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.501T>C|p.Asn167Asn|501/582|501/582|167/193||	GT:AD:DP:GQ:PL	0/1:17,21:38:99:473,0,508	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10383	.	T	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.411;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.38;MQ0=2;MQRankSum=-5.517;QD=12.19;ReadPosRankSum=1.077;SOR=1.202;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.480A>G|p.Gln160Gln|480/582|480/582|160/193||	GT:AD:DP:GQ:PL	0/1:18,23:41:99:528,0,447	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10384	.	T	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.411;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.38;MQ0=2;MQRankSum=-5.517;QD=11.68;ReadPosRankSum=1.425;SOR=1.202;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.479A>C|p.Gln160Pro|479/582|479/582|160/193||	GT:AD:DP:GQ:PL	0/1:18,23:41:99:507,0,452	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10389	.	G	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.005;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=46.75;MQ0=2;MQRankSum=-5.622;QD=11.59;ReadPosRankSum=2.307;SOR=1.396;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.474C>G|p.Asp158Glu|474/582|474/582|158/193||	GT:AD:DP:GQ:PL	0/1:19,23:42:99:515,0,512	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10404	.	TACCGGCAAGTACTC	T	2107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.27;MQ0=0;MQRankSum=-5.206;QD=14.11;ReadPosRankSum=3.764;SOR=0.616;ANN=T|frameshift_variant|HIGH|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.445_458delGAGTACTTGCCGGT|p.Glu149fs|458/582|445/582|149/193||;LOF=(EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|1|1.00)	GT:AD:DP:GQ:PL	0/1:19,13:36:99:2145,0,2833	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10430	.	C	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=48.71;MQ0=0;MQRankSum=-5.010;QD=14.85;ReadPosRankSum=0.342;SOR=0.483;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.433G>C|p.Val145Leu|433/582|433/582|145/193||	GT:AD:DP:GQ:PL	0/1:13,22:35:99:548,0,376	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10451	.	A	C	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.295;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=48.15;MQ0=0;MQRankSum=-4.793;QD=16.02;ReadPosRankSum=0.637;SOR=0.425;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.412T>G|p.Leu138Val|412/582|412/582|138/193||	GT:AD:DP:GQ:PL	0/1:15,26:42:99:685,0,397	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10493	.	C	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.44;MQ0=0;MQRankSum=-5.472;QD=14.38;ReadPosRankSum=1.504;SOR=1.493;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.370G>C|p.Val124Leu|370/582|370/582|124/193||	GT:AD:DP:GQ:PL	0/1:18,18:36:99:546,0,610	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10496	.	G	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.44;MQ0=0;MQRankSum=-5.472;QD=14.02;ReadPosRankSum=1.552;SOR=1.493;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.367C>A|p.Gln123Lys|367/582|367/582|123/193||	GT:AD:DP:GQ:PL	0/1:18,18:36:99:533,0,594	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10499	.	CTCGGATGT	C	1416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DP=32;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=51.15;MQ0=0;MQRankSum=-5.076;QD=16.60;ReadPosRankSum=1.077;SOR=1.201;ANN=C|frameshift_variant|HIGH|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.356_363delACATCCGA|p.Asn119fs|363/582|356/582|119/193||;LOF=(EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|1|1.00)	GT:AD:DP:GQ:PL	0/1:15,17:32:99:1454,0,1564	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10509	.	C	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.093;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=51.44;MQ0=0;MQRankSum=-5.197;QD=15.21;ReadPosRankSum=1.262;SOR=1.371;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.354G>C|p.Gln118His|354/582|354/582|118/193||	GT:AD:DP:GQ:PL	0/1:16,17:33:99:530,0,569	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10511	.	G	A	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.093;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=51.44;MQ0=0;MQRankSum=-5.197;QD=15.08;ReadPosRankSum=1.153;SOR=1.371;ANN=A|stop_gained|HIGH|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.352C>T|p.Gln118*|352/582|352/582|118/193||	GT:AD:DP:GQ:PL	0/1:16,17:33:99:526,0,562	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10536	.	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.002;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=52.44;MQ0=0;MQRankSum=-5.403;QD=15.35;ReadPosRankSum=-0.698;SOR=1.154;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.327T>C|p.Leu109Leu|327/582|327/582|109/193||	GT:AD:DP:GQ:PL	0/1:17,19:36:99:581,0,593	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10542	.	A	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.976;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=-4.717;QD=10.63;ReadPosRankSum=-0.368;SOR=1.243;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.321T>C|p.Cys107Cys|321/582|321/582|107/193||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:294,0,549	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10545	.	T	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.862;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-4.754;QD=9.43;ReadPosRankSum=0.409;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.318A>T|p.Lys106Asn|318/582|318/582|106/193||	GT:AD:DP:GQ:PL	0/1:17,8:25:99:264,0,582	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10548	.	T	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-4.864;QD=8.88;ReadPosRankSum=0.778;SOR=1.071;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.315A>G|p.Pro105Pro|315/582|315/582|105/193||	GT:AD:DP:GQ:PL	0/1:18,8:26:99:259,0,639	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10549	.	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.771;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.49;MQ0=0;MQRankSum=-4.971;QD=8.51;ReadPosRankSum=0.957;SOR=1.034;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.314C>T|p.Pro105Leu|314/582|314/582|105/193||	GT:AD:DP:GQ:PL	0/1:19,8:27:99:258,0,668	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10557	.	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-4.864;QD=9.07;ReadPosRankSum=0.779;SOR=1.071;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.306A>G|p.Lys102Lys|306/582|306/582|102/193||	GT:AD:DP:GQ:PL	0/1:18,8:26:99:264,0,604	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10563	.	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-4.864;QD=8.95;ReadPosRankSum=1.085;SOR=1.071;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.300G>A|p.Ala100Ala|300/582|300/582|100/193||	GT:AD:DP:GQ:PL	0/1:18,8:26:99:261,0,643	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10565	.	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=-4.118;QD=7.72;ReadPosRankSum=1.783;SOR=1.044;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.298G>A|p.Ala100Thr|298/582|298/582|100/193||	GT:AD:DP:GQ:PL	0/1:21,8:29:99:252,0,716	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10570	.	T	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.634;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=-4.326;QD=7.09;ReadPosRankSum=2.056;SOR=1.053;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.293A>C|p.Lys98Thr|293/582|293/582|98/193||	GT:AD:DP:GQ:PL	0/1:23,8:31:99:248,0,759	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10575	.	C	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQ0=0;MQRankSum=-4.425;QD=6.93;ReadPosRankSum=2.025;SOR=1.093;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.288G>T|p.Ala96Ala|288/582|288/582|96/193||	GT:AD:DP:GQ:PL	0/1:24,8:32:99:250,0,766	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10578	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-4.798;QD=6.02;ReadPosRankSum=2.342;SOR=1.002;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.285G>A|p.Lys95Lys|285/582|285/582|95/193||	GT:AD:DP:GQ:PL	0/1:28,8:36:99:245,0,807	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10579	.	T	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.547;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.30;MQ0=0;MQRankSum=-4.708;QD=6.16;ReadPosRankSum=2.221;SOR=1.085;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.284A>C|p.Lys95Thr|284/582|284/582|95/193||	GT:AD:DP:GQ:PL	0/1:27,8:35:99:244,0,774	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10580	.	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.547;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.30;MQ0=0;MQRankSum=-4.708;QD=6.19;ReadPosRankSum=2.142;SOR=1.085;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.283A>G|p.Lys95Glu|283/582|283/582|95/193||	GT:AD:DP:GQ:PL	0/1:27,8:35:99:245,0,761	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10585	.	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=0;MQRankSum=-5.709;QD=7.28;ReadPosRankSum=0.639;SOR=1.582;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.278T>C|p.Ile93Thr|278/582|278/582|93/193||	GT:AD:DP:GQ:PL	0/1:25,10:35:99:283,0,670	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10639	.	C	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.670;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.76;MQ0=0;MQRankSum=-5.468;QD=6.09;ReadPosRankSum=-0.458;SOR=1.140;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.224G>C|p.Trp75Ser|224/582|224/582|75/193||	GT:AD:DP:GQ:PL	0/1:24,8:32:99:223,0,700	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10641	.	C	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.691;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.86;MQ0=0;MQRankSum=-5.562;QD=5.66;ReadPosRankSum=0.042;SOR=1.274;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.222G>T|p.Lys74Asn|222/582|222/582|74/193||	GT:AD:DP:GQ:PL	0/1:25,8:33:99:215,0,733	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10646	.	T	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.691;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.86;MQ0=0;MQRankSum=-5.562;QD=5.66;ReadPosRankSum=0.547;SOR=1.274;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.217A>C|p.Ile73Leu|217/582|217/582|73/193||	GT:AD:DP:GQ:PL	0/1:25,8:33:99:215,0,730	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10650	.	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.658;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=-5.743;QD=5.31;ReadPosRankSum=1.259;SOR=1.525;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.213C>T|p.Asp71Asp|213/582|213/582|71/193||	GT:AD:DP:GQ:PL	0/1:27,8:35:99:214,0,797	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10654	.	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.528;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-5.653;QD=5.46;ReadPosRankSum=1.707;SOR=1.402;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.209C>T|p.Pro70Leu|209/582|209/582|70/193||	GT:AD:DP:GQ:PL	0/1:26,8:34:99:214,0,800	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10675	.	G	C	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.76;MQ0=0;MQRankSum=-5.468;QD=5.84;ReadPosRankSum=3.204;SOR=1.368;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.188C>G|p.Ala63Gly|188/582|188/582|63/193||	GT:AD:DP:GQ:PL	0/1:24,8:32:99:215,0,736	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10740	.	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DP=31;Dels=0.00;ExcessHet=3.0103;FS=9.160;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.93;MQ0=1;MQRankSum=-4.851;QD=8.32;ReadPosRankSum=-3.812;SOR=2.480;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.123A>G|p.Arg41Arg|123/582|123/582|41/193||	GT:AD:DP:GQ:PL	0/1:19,12:31:99:286,0,588	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10745	.	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;DP=29;Dels=0.00;ExcessHet=3.0103;FS=13.085;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=1;MQRankSum=-4.661;QD=7.89;ReadPosRankSum=-3.642;SOR=3.048;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.118T>C|p.Leu40Leu|118/582|118/582|40/193||	GT:AD:DP:GQ:PL	0/1:19,10:29:99:257,0,600	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10747	.	G	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=29;Dels=0.00;ExcessHet=3.0103;FS=13.085;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=1;MQRankSum=-4.661;QD=7.89;ReadPosRankSum=-3.592;SOR=3.048;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.116C>A|p.Thr39Asn|116/582|116/582|39/193||	GT:AD:DP:GQ:PL	0/1:19,10:29:99:257,0,591	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10761	.	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;DP=27;Dels=0.00;ExcessHet=3.0103;FS=10.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=0;MQRankSum=-4.524;QD=5.99;ReadPosRankSum=-3.073;SOR=2.561;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.102G>A|p.Ser34Ser|102/582|102/582|34/193||	GT:AD:DP:GQ:PL	0/1:20,7:27:99:190,0,587	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10770	.	G	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;DP=25;Dels=0.00;ExcessHet=3.0103;FS=12.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-4.205;QD=4.71;ReadPosRankSum=-2.142;SOR=3.603;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.93C>G|p.Val31Val|93/582|93/582|31/193||	GT:AD:DP:GQ:PL	0/1:20,5:25:99:146,0,536	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10775	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=24;Dels=0.00;ExcessHet=3.0103;FS=10.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-3.978;QD=3.41;ReadPosRankSum=-1.589;SOR=3.238;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.88G>A|p.Val30Ile|88/582|88/582|30/193||	GT:AD:DP:GQ:PL	0/1:20,4:24:99:110,0,571	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	10782	.	T	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;DP=23;Dels=0.00;ExcessHet=3.0103;FS=10.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-3.644;QD=1.56;ReadPosRankSum=-0.959;SOR=2.802;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_10281_10862|GENE_EXON_scaffold149229_cov62_10281_10862|transcript|Soaet10008909|protein_coding|1/1|c.81A>T|p.Ile27Ile|81/582|81/582|27/193||	GT:AD:DP:GQ:PL	0/1:20,3:23:64:64,0,586	scaffold149229_cov62	GLEAN	mRNA	10281	10862	0.78	-	.	ID=Soaet10008909
scaffold149229_cov62	20871	.	A	G	22.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-2.451;QD=0.62;ReadPosRankSum=0.111;SOR=0.877;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.855T>C|p.His285His|855/885|855/885|285/294||	GT:AD:DP:GQ:PL	0/1:32,5:37:51:51,0,924	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	20875	.	G	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-2.531;QD=0.29;ReadPosRankSum=0.000;SOR=0.760;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.851C>G|p.Pro284Arg|851/885|851/885|284/294||	GT:AD:DP:GQ:PL	0/1:34,5:39:39:39,0,1033	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	20949	.	G	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.26;ReadPosRankSum=0.650;SOR=0.782;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.777C>T|p.Asp259Asp|777/885|777/885|259/294||	GT:AD:DP:GQ:PL	0/1:15,22:37:99:667,0,474	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	20959	.	G	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.59;ReadPosRankSum=0.660;SOR=0.990;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.767C>T|p.Ala256Val|767/885|767/885|256/294||	GT:AD:DP:GQ:PL	0/1:16,21:38:99:642,0,483	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	20990	.	T	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.09;ReadPosRankSum=0.264;SOR=1.270;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.736A>G|p.Ser246Gly|736/885|736/885|246/294||	GT:AD:DP:GQ:PL	0/1:16,16:32:99:511,0,471	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	20991	.	T	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.189;SOR=1.270;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.735A>T|p.Ala245Ala|735/885|735/885|245/294||	GT:AD:DP:GQ:PL	0/1:16,16:32:99:431,0,480	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	20992	.	G	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.132;SOR=1.270;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.734C>T|p.Ala245Val|734/885|734/885|245/294||	GT:AD:DP:GQ:PL	0/1:16,16:32:99:497,0,429	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21038	.	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.625;SOR=0.677;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.688G>A|p.Ala230Thr|688/885|688/885|230/294||	GT:AD:DP:GQ:PL	0/1:17,20:37:99:553,0,442	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21093	.	C	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.22;ReadPosRankSum=1.701;SOR=0.593;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.633G>A|p.Lys211Lys|633/885|633/885|211/294||	GT:AD:DP:GQ:PL	0/1:19,20:39:99:622,0,539	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21108	.	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.11;ReadPosRankSum=0.137;SOR=0.663;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.618C>T|p.Asn206Asn|618/885|618/885|206/294||	GT:AD:DP:GQ:PL	0/1:17,26:43:99:635,0,490	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21151	.	T	A	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.87;ReadPosRankSum=0.000;SOR=0.482;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.575A>T|p.Tyr192Phe|575/885|575/885|192/294||	GT:AD:DP:GQ:PL	0/1:15,24:39:99:647,0,379	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21168	.	C	T	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.221;SOR=0.765;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|5/5|c.558G>A|p.Lys186Lys|558/885|558/885|186/294||	GT:AD:DP:GQ:PL	0/1:13,20:33:99:511,0,380	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21183	.	G	GTTCACAAAAAAATGACT	2966.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.70;ReadPosRankSum=0.186;SOR=0.804;ANN=GTTCACAAAAAAATGACT|splice_region_variant&intron_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.546-4_546-3insAGTCATTTTTTTGTGAA||||||	GT:AD:DP:GQ:PL	0/1:12,16:30:99:3004,0,1880	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21187	.	T	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.199;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.54;ReadPosRankSum=3.054;SOR=1.781;ANN=C|splice_region_variant&intron_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.546-7A>G||||||	GT:AD:DP:GQ:PL	0/1:12,8:20:99:279,0,353	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21197	.	A	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.41;ReadPosRankSum=1.842;SOR=1.532;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.546-17T>G||||||	GT:AD:DP:GQ:PL	0/1:10,9:19:99:321,0,287	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21210	.	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.870;SOR=0.368;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.546-30G>A||||||	GT:AD:DP:GQ:PL	0/1:16,5:22:99:117,0,518	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21266	.	T	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-0.674;QD=11.90;ReadPosRankSum=1.342;SOR=0.307;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+61A>T||||||	GT:AD:DP:GQ:PL	0/1:6,6:12:99:171,0,208	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21267	.	T	TAAG	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-0.674;QD=12.81;ReadPosRankSum=1.763;SOR=0.307;ANN=TAAG|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+59_545+60insCTT||||||	GT:AD:DP:GQ:PL	0/1:6,6:12:99:191,0,345	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21269	.	T	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-0.674;QD=5.40;ReadPosRankSum=1.691;SOR=0.307;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+58A>T||||||	GT:AD:DP:GQ:PL	0/1:6,6:12:93:93,0,226	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21270	.	TA	T	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-0.674;QD=9.56;ReadPosRankSum=1.763;SOR=0.307;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+56delT||||||	GT:AD:DP:GQ:PL	0/1:6,6:12:99:152,0,237	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21276	.	A	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-0.674;QD=10.20;ReadPosRankSum=1.526;SOR=0.790;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+51T>A||||||	GT:AD:DP:GQ:PL	0/1:7,7:14:99:171,0,175	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21296	.	A	G	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.5875;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=1;MQRankSum=-0.684;QD=13.30;ReadPosRankSum=0.182;SOR=0.970;ANN=G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+31T>C||||||	GT:AD:DP:GQ:PL	0/1:7,12:19:99:281,0,162	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21301	.	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=10.5033;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=1;MQRankSum=-0.684;QD=14.25;ReadPosRankSum=0.863;SOR=1.163;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+26C>T||||||	GT:AD:DP:GQ:PL	0/1:7,12:20:99:299,0,168	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21312	.	G	A	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.70;MQ0=1;MQRankSum=-0.740;QD=13.29;ReadPosRankSum=0.602;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|4/4|c.545+15C>T||||||	GT:AD:DP:GQ:PL	0/1:9,14:23:99:334,0,206	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21421	.	A	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.806;SOR=1.890;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-15T>A||||||	GT:AD:DP:GQ:PL	0/1:15,9:24:99:166,0,379	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21423	.	C	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;DP=23;Dels=0.00;ExcessHet=3.0103;FS=6.415;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.410;SOR=2.093;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-17G>T||||||	GT:AD:DP:GQ:PL	0/1:14,9:23:99:237,0,345	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21465	.	G	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-1.251;SOR=0.883;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-59C>A||||||	GT:AD:DP:GQ:PL	0/1:10,6:16:99:136,0,259	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21567	.	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DP=5;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.15;ReadPosRankSum=-1.036;SOR=0.859;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-161C>T||||||	GT:AD:DP:GQ:PL	0/1:2,3:5:69:69,0,72	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21579	.	A	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DP=5;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.524;SOR=0.859;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-173T>A||||||	GT:AD:DP:GQ:PL	0/1:2,3:5:72:73,0,72	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21590	.	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=6;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.46;ReadPosRankSum=0.000;SOR=1.414;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-184G>A||||||	GT:AD:DP:GQ:PL	0/1:2,4:6:69:103,0,69	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21603	.	C	T	128.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;DP=7;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.40;ReadPosRankSum=-0.366;SOR=1.108;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-197G>A||||||	GT:AD:DP:GQ:PL	0/1:1,6:7:27:157,0,27	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21606	.	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DP=7;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.68;ReadPosRankSum=-0.366;SOR=1.108;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-200G>A||||||	GT:AD:DP:GQ:PL	0/1:1,6:7:30:117,0,30	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21641	.	A	G	216.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-235T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:245,18,0	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21658	.	A	T	216.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SOR=0.892;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-252T>A||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:245,18,0	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21664	.	T	A	230.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-258A>T||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:259,18,0	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21670	.	G	A	230.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.65;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-264C>T||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:259,18,0	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21686	.	TTA	T	365.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.67;ReadPosRankSum=1.645;SOR=0.569;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-282_466-281delTA||||||	GT:AD:DP:GQ:PL	0/1:1,9:11:25:403,0,25	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21691	.	A	G	189.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.99;ReadPosRankSum=1.645;SOR=0.569;ANN=G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-285T>C||||||	GT:AD:DP:GQ:PL	0/1:1,9:10:15:218,0,15	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21695	.	T	C	172.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.28;ReadPosRankSum=1.645;SOR=0.569;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.466-289A>G||||||	GT:AD:DP:GQ:PL	0/1:1,9:10:24:201,0,24	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21800	.	T	TAA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.36;RPA=7,9;RU=A;ReadPosRankSum=0.358;SOR=0.368;STR;ANN=TAA|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+249_465+250insTT||||||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:283,0,301	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21816	.	A	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-0.956;SOR=0.385;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+234T>G||||||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:225,0,225	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21821	.	G	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-0.249;SOR=0.593;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+229C>G||||||	GT:AD:DP:GQ:PL	0/1:12,9:21:99:222,0,269	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21832	.	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.768;SOR=0.991;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+218G>A||||||	GT:AD:DP:GQ:PL	0/1:11,10:21:99:218,0,264	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21876	.	A	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.211;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+174T>G||||||	GT:AD:DP:GQ:PL	0/1:12,5:17:99:99,0,315	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21888	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.793;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+162G>A||||||	GT:AD:DP:GQ:PL	0/1:12,5:17:96:96,0,345	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21908	.	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.132;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+142C>T||||||	GT:AD:DP:GQ:PL	0/1:13,6:19:99:130,0,386	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21925	.	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.60;ReadPosRankSum=1.541;SOR=0.473;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+125G>A||||||	GT:AD:DP:GQ:PL	0/1:14,4:18:93:93,0,348	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21928	.	T	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.417;SOR=0.569;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+122A>G||||||	GT:AD:DP:GQ:PL	0/1:13,4:17:93:93,0,354	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21964	.	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-1.191;SOR=0.569;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+86C>T||||||	GT:AD:DP:GQ:PL	0/1:13,4:17:99:124,0,349	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	21988	.	C	T	22.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.106;SOR=1.118;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+62G>A||||||	GT:AD:DP:GQ:PL	0/1:17,3:20:51:51,0,395	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22017	.	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.554;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+33T>C||||||	GT:AD:DP:GQ:PL	0/1:18,4:22:87:87,0,440	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22024	.	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.041;SOR=1.574;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/4|c.465+26C>T||||||	GT:AD:DP:GQ:PL	0/1:19,4:23:87:87,0,443	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22052	.	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.039;SOR=0.663;ANN=A|missense_variant&splice_region_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/5|c.463C>T|p.Pro155Ser|463/885|463/885|155/294||	GT:AD:DP:GQ:PL	0/1:17,5:22:90:90,0,438	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22070	.	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.595;SOR=0.697;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/5|c.445A>G|p.Lys149Glu|445/885|445/885|149/294||	GT:AD:DP:GQ:PL	0/1:13,7:20:99:135,0,345	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22081	.	G	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.171;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.488;SOR=0.223;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/5|c.434C>A|p.Ala145Glu|434/885|434/885|145/294||	GT:AD:DP:GQ:PL	0/1:10,6:16:99:138,0,291	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22105	.	T	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.115;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.206;SOR=0.636;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/5|c.410A>T|p.Lys137Ile|410/885|410/885|137/294||	GT:AD:DP:GQ:PL	0/1:9,7:16:99:180,0,265	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22114	.	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.598;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.000;SOR=0.946;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/5|c.401G>A|p.Arg134Lys|401/885|401/885|134/294||	GT:AD:DP:GQ:PL	0/1:9,8:17:99:217,0,255	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22132	.	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.49;ReadPosRankSum=0.412;SOR=0.732;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/5|c.383C>T|p.Thr128Ile|383/885|383/885|128/294||	GT:AD:DP:GQ:PL	0/1:7,9:16:99:260,0,180	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22149	.	A	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.331;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.42;ReadPosRankSum=-0.849;SOR=0.223;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|3/5|c.366T>C|p.Asp122Asp|366/885|366/885|122/294||	GT:AD:DP:GQ:PL	0/1:4,12:16:99:275,0,136	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	22877	.	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-0.618;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_20841_21180|GENE_EXON_scaffold149229_cov62_20841_21180|transcript|Soaet10008910|protein_coding|1/4|c.113-73G>A||||||	GT:AD:DP:GQ:PL	0/1:6,5:11:99:147,0,150	scaffold149229_cov62	GLEAN	mRNA	20841	23076	0.38	-	.	ID=Soaet10008910
scaffold149229_cov62	41479	.	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.21;MQ0=0;MQRankSum=-3.946;QD=2.99;ReadPosRankSum=0.000;SOR=0.839;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_34461_34572|GENE_EXON_scaffold149229_cov62_34461_34572|transcript|Soaet10008913|protein_coding|2/2|c.648-977T>C||||||	GT:AD:DP:GQ:PL	0/1:21,7:28:99:112,0,547	scaffold149229_cov62	GLEAN	mRNA	34461	42948	0.45	+	.	ID=Soaet10008913
scaffold149229_cov62	41691	.	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=14;MQRankSum=-0.664;QD=2.03;ReadPosRankSum=-0.393;SOR=0.330;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_34461_34572|GENE_EXON_scaffold149229_cov62_34461_34572|transcript|Soaet10008913|protein_coding|2/2|c.648-765G>A||||||	GT:AD:DP:GQ:PL	0/1:25,4:29:87:87,0,372	scaffold149229_cov62	GLEAN	mRNA	34461	42948	0.45	+	.	ID=Soaet10008913
scaffold149229_cov62	41992	.	G	A	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.6121;MLEAC=1;MLEAF=0.500;MQ=49.30;MQ0=1;MQRankSum=-3.779;QD=0.62;ReadPosRankSum=2.839;SOR=0.476;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding||c.-4870G>A|||||4870|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_34461_34572|GENE_EXON_scaffold149229_cov62_34461_34572|transcript|Soaet10008913|protein_coding|2/2|c.648-464G>A||||||	GT:AD:DP:GQ:PL	0/1:25,7:33:48:48,0,656	scaffold149229_cov62	GLEAN	mRNA	34461	42948	0.45	+	.	ID=Soaet10008913
scaffold149229_cov62	49625	.	A	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-1.135;SOR=0.889;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding|2/2|c.2316A>G|p.Gln772Gln|2316/3084|2316/3084|772/1027||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_52219_52782|GENE_EXON_scaffold149229_cov62_52219_52782|transcript|Soaet10008915|protein_coding||c.*2594T>C|||||2594|	GT:AD:DP:GQ:PL	0/1:8,8:16:99:254,0,245	scaffold149229_cov62	GLEAN	mRNA	46862	50393	0.67	+	.	ID=Soaet10008914
scaffold149229_cov62	50177	.	C	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=1;MQRankSum=-2.300;QD=4.46;ReadPosRankSum=-2.161;SOR=0.582;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding|2/2|c.2868C>G|p.Thr956Thr|2868/3084|2868/3084|956/1027||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_52219_52782|GENE_EXON_scaffold149229_cov62_52219_52782|transcript|Soaet10008915|protein_coding||c.*2042G>C|||||2042|	GT:AD:DP:GQ:PL	0/1:32,13:45:99:229,0,1017	scaffold149229_cov62	GLEAN	mRNA	46862	50393	0.67	+	.	ID=Soaet10008914
scaffold149229_cov62	52495	.	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;DP=38;Dels=0.00;ExcessHet=3.0103;FS=9.779;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=-5.712;QD=1.18;ReadPosRankSum=-1.639;SOR=4.170;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_52219_52782|GENE_EXON_scaffold149229_cov62_52219_52782|transcript|Soaet10008915|protein_coding|1/1|c.288G>A|p.Pro96Pro|288/564|288/564|96/187||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding||c.*2102C>T|||||2102|	GT:AD:DP:GQ:PL	0/1:31,7:38:73:73,0,1005	scaffold149229_cov62	GLEAN	mRNA	52219	52782	0.97	-	.	ID=Soaet10008915
scaffold149229_cov62	52532	.	G	C	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DP=44;Dels=0.00;ExcessHet=3.0103;FS=5.923;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQ0=0;MQRankSum=-5.654;QD=4.63;ReadPosRankSum=-1.317;SOR=2.303;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_52219_52782|GENE_EXON_scaffold149229_cov62_52219_52782|transcript|Soaet10008915|protein_coding|1/1|c.251C>G|p.Pro84Arg|251/564|251/564|84/187||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding||c.*2139G>C|||||2139|	GT:AD:DP:GQ:PL	0/1:34,10:44:99:232,0,998	scaffold149229_cov62	GLEAN	mRNA	52219	52782	0.97	-	.	ID=Soaet10008915
scaffold149229_cov62	52581	.	T	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=2.219;QD=7.57;ReadPosRankSum=1.323;SOR=0.478;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_52219_52782|GENE_EXON_scaffold149229_cov62_52219_52782|transcript|Soaet10008915|protein_coding|1/1|c.202A>C|p.Lys68Gln|202/564|202/564|68/187||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding||c.*2188T>G|||||2188|	GT:AD:DP:GQ:PL	0/1:37,15:52:99:422,0,1065	scaffold149229_cov62	GLEAN	mRNA	52219	52782	0.97	-	.	ID=Soaet10008915
scaffold149229_cov62	52738	.	C	T	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.562;HaplotypeScore=8.2429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.181;SOR=1.127;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_52219_52782|GENE_EXON_scaffold149229_cov62_52219_52782|transcript|Soaet10008915|protein_coding|1/1|c.45G>A|p.Val15Val|45/564|45/564|15/187||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding||c.*2345C>T|||||2345|	GT:AD:DP:GQ:PL	0/1:30,18:48:99:473,0,1012	scaffold149229_cov62	GLEAN	mRNA	52219	52782	0.97	-	.	ID=Soaet10008915
scaffold149229_cov62	52739	.	A	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.562;HaplotypeScore=8.2429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-0.149;SOR=1.127;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_52219_52782|GENE_EXON_scaffold149229_cov62_52219_52782|transcript|Soaet10008915|protein_coding|1/1|c.44T>C|p.Val15Ala|44/564|44/564|15/187||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_46862_47395|GENE_EXON_scaffold149229_cov62_46862_47395|transcript|Soaet10008914|protein_coding||c.*2346A>G|||||2346|	GT:AD:DP:GQ:PL	0/1:30,18:48:99:467,0,968	scaffold149229_cov62	GLEAN	mRNA	52219	52782	0.97	-	.	ID=Soaet10008915
scaffold149229_cov62	68858	.	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.75;ReadPosRankSum=-0.812;SOR=0.941;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.32871G>A|p.Val10957Val|32871/33153|32871/33153|10957/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,7:9:30:161,0,30	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	68886	.	C	T	161.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.18;ReadPosRankSum=-0.728;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.32843G>A|p.Arg10948Lys|32843/33153|32843/33153|10948/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,8:10:27:190,0,27	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	70387	.	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.524;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.31342T>C|p.Phe10448Leu|31342/33153|31342/33153|10448/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,4:6:66:78,0,66	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72224	.	C	T	57.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=14.44;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29505G>A|p.Glu9835Glu|29505/33153|29505/33153|9835/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:85,6,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72226	.	C	G	59.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=14.94;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29503G>C|p.Glu9835Gln|29503/33153|29503/33153|9835/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:87,6,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72231	.	T	C	59.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=14.94;SOR=0.693;ANN=C|stop_retained_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29498A>G|p.Ter9833Ter|29498/33153|29498/33153|9833/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:87,6,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72285	.	C	T	62.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=15.69;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29444G>A|p.Ser9815Asn|29444/33153|29444/33153|9815/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:90,6,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72288	.	T	A	62.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=15.69;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29441A>T|p.Lys9814Met|29441/33153|29441/33153|9814/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:90,6,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72300	.	T	A	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=-0.674;QD=2.78;ReadPosRankSum=1.383;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29429A>T|p.Lys9810Ile|29429/33153|29429/33153|9810/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,2:4:39:39,0,39	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72301	.	T	A	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=0.674;QD=2.78;ReadPosRankSum=-1.383;SOR=0.693;ANN=A|stop_gained|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29428A>T|p.Lys9810*|29428/33153|29428/33153|9810/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,2:4:39:39,0,39	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72321	.	A	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.92;MQ0=0;MQRankSum=-0.431;QD=3.71;ReadPosRankSum=0.967;SOR=0.223;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29408T>A|p.Ile9803Lys|29408/33153|29408/33153|9803/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,2:3:34:39,0,34	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72325	.	A	G	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.500;MQ=54.92;MQ0=0;MQRankSum=-0.431;QD=3.71;ReadPosRankSum=0.967;SOR=0.223;ANN=G|stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29404T>C|p.Ter9802Glnext*?|29404/33153|29404/33153|9802/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:39,0,36	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72331	.	C	G	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=54.92;MQ0=0;MQRankSum=-0.431;QD=3.71;ReadPosRankSum=0.000;SOR=0.223;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29398G>C|p.Ala9800Pro|29398/33153|29398/33153|9800/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:39,0,36	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72420	.	T	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;DP=9;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.64;ReadPosRankSum=0.241;SOR=1.981;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.29309A>C|p.Gln9770Pro|29309/33153|29309/33153|9770/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,5:9:71:151,0,71	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72950	.	T	C	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.967;SOR=0.223;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.28779A>G|p.Val9593Val|28779/33153|28779/33153|9593/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,2:3:36:39,0,36	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	72998	.	A	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.10;ReadPosRankSum=-1.242;SOR=1.329;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.28731T>C|p.Phe9577Phe|28731/33153|28731/33153|9577/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,6:8:30:157,0,30	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	73050	.	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.25;ReadPosRankSum=0.060;SOR=1.981;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.28679T>C|p.Leu9560Ser|28679/33153|28679/33153|9560/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,5:7:30:156,0,30	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	75276	.	C	T	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.99;ReadPosRankSum=1.470;SOR=0.976;ANN=T|stop_gained|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.26453G>A|p.Trp8818*|26453/33153|26453/33153|8818/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:314,0,169	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	75353	.	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-0.789;SOR=0.368;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.26376C>T|p.Tyr8792Tyr|26376/33153|26376/33153|8792/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:3,8:11:66:189,0,66	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	75848	.	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.375;SOR=0.412;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.25881A>G|p.Ile8627Met|25881/33153|25881/33153|8627/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,6:15:99:164,0,258	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	75879	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-1.248;SOR=0.760;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.25850C>T|p.Thr8617Ile|25850/33153|25850/33153|8617/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:148,0,111	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	76743	.	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-0.776;QD=6.86;ReadPosRankSum=0.567;SOR=0.814;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.24986T>C|p.Phe8329Ser|24986/33153|24986/33153|8329/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:138,0,265	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	78006	.	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-2.223;SOR=0.477;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.23723C>T|p.Thr7908Ile|23723/33153|23723/33153|7908/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:273,0,99	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	78030	.	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.60;ReadPosRankSum=-0.375;SOR=0.525;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.23699G>A|p.Ser7900Asn|23699/33153|23699/33153|7900/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:231,0,102	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	78041	.	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.920;SOR=0.223;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.23688G>A|p.Leu7896Leu|23688/33153|23688/33153|7896/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,10:14:99:231,0,102	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	78704	.	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.25;ReadPosRankSum=-0.258;SOR=0.760;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.23025G>A|p.Met7675Ile|23025/33153|23025/33153|7675/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:108,0,190	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	79421	.	C	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.290;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-2.740;QD=7.45;ReadPosRankSum=0.112;SOR=1.406;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.22308G>T|p.Leu7436Leu|22308/33153|22308/33153|7436/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,12:33:99:274,0,501	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	80215	.	T	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-2.046;QD=8.66;ReadPosRankSum=-0.667;SOR=0.410;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.21514A>T|p.Asn7172Tyr|21514/33153|21514/33153|7172/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,19:45:99:418,0,712	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	81182	.	CACA	C	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQ0=0;MQRankSum=0.208;QD=29.34;RPA=7,6;RU=ACA;ReadPosRankSum=0.834;SOR=0.608;STR;ANN=C|disruptive_inframe_deletion|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.20544_20546delTGT|p.Val6849del|20546/33153|20544/33153|6848/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,13:21:99:624,0,308	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	81316	.	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=53.11;MQ0=0;MQRankSum=-3.087;QD=11.17;ReadPosRankSum=-2.497;SOR=0.368;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.20413G>A|p.Gly6805Ser|20413/33153|20413/33153|6805/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:207,0,126	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	81476	.	G	A	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=49.30;MQ0=0;MQRankSum=-2.746;QD=0.88;ReadPosRankSum=-0.063;SOR=1.460;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.20253C>T|p.Tyr6751Tyr|20253/33153|20253/33153|6751/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,3:17:43:43,0,429	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	81640	.	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.29;MQ0=0;MQRankSum=-4.252;QD=1.03;ReadPosRankSum=-0.098;SOR=1.579;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.20089A>G|p.Asn6697Asp|20089/33153|20089/33153|6697/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,7:30:59:59,0,698	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	81778	.	A	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.916;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.47;MQ0=0;MQRankSum=-1.240;QD=13.09;ReadPosRankSum=-1.522;SOR=0.523;ANN=G|stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.19951T>C|p.Ter6651Argext*?|19951/33153|19951/33153|6651/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:290,0,234	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	82863	.	T	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.40;ReadPosRankSum=-0.114;SOR=0.446;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.18866A>T|p.His6289Leu|18866/33153|18866/33153|6289/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,13:17:51:392,0,51	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	83287	.	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.61;MQ0=0;MQRankSum=-2.965;QD=6.98;ReadPosRankSum=-0.456;SOR=0.495;ANN=A|stop_gained|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.18442C>T|p.Arg6148*|18442/33153|18442/33153|6148/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:105,0,186	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	83351	.	C	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQ0=0;MQRankSum=-1.641;QD=6.75;ReadPosRankSum=0.879;SOR=0.330;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.18378G>C|p.Leu6126Phe|18378/33153|18378/33153|6126/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:143,0,257	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	83606	.	T	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.108;SOR=1.108;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.18123A>T|p.Val6041Val|18123/33153|18123/33153|6041/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:114,0,105	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	83668	.	T	G	122.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.319;SOR=0.330;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.18061A>C|p.Ile6021Leu|18061/33153|18061/33153|6021/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,7:8:27:151,0,27	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	84251	.	A	T	135.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.09;ReadPosRankSum=0.000;SOR=0.223;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.17478T>A|p.Asn5826Lys|17478/33153|17478/33153|5826/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,8:9:27:164,0,27	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	86661	.	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-1.113;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.15068A>G|p.Lys5023Arg|15068/33153|15068/33153|5023/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:105,0,150	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	87520	.	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.193;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.146;SOR=0.532;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.14209G>A|p.Ala4737Thr|14209/33153|14209/33153|4737/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,7:16:99:116,0,298	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	87645	.	G	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=-2.165;QD=1.94;ReadPosRankSum=-1.120;SOR=2.812;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.14084C>A|p.Thr4695Asn|14084/33153|14084/33153|4695/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,3:19:65:65,0,398	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	88365	.	T	A	68.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;DP=9;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=8.4147;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=1.383;QD=7.59;ReadPosRankSum=-0.687;SOR=0.707;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.13364A>T|p.Lys4455Ile|13364/33153|13364/33153|4455/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:4,5:9:9:96,9,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	88367	.	T	G	139.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4147;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=2.200;QD=15.45;ReadPosRankSum=0.549;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.13362A>C|p.Lys4454Asn|13362/33153|13362/33153|4454/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,7:9:12:167,12,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	88375	.	A	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.608;SOR=0.368;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.13354T>G|p.Trp4452Gly|13354/33153|13354/33153|4452/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:3,4:7:33:111,0,33	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	90127	.	TA	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.97;RPA=10,9;RU=A;ReadPosRankSum=0.687;SOR=1.022;STR;ANN=T|frameshift_variant|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.11601delT|p.Phe3867fs|11601/33153|11601/33153|3867/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:4,5:12:89:127,0,89	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	91823	.	G	A	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.906;SOR=0.836;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9906C>T|p.Ser3302Ser|9906/33153|9906/33153|3302/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:346,0,363	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92092	.	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-2.240;QD=2.69;ReadPosRankSum=0.159;SOR=1.118;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9637A>G|p.Ile3213Val|9637/33153|9637/33153|3213/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,3:20:82:82,0,470	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92128	.	G	A	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9474;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-2.353;QD=0.93;ReadPosRankSum=-0.170;SOR=0.223;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9601C>T|p.Pro3201Ser|9601/33153|9601/33153|3201/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,2:16:42:42,0,465	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92130	.	G	A	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.1587;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-2.353;QD=1.12;ReadPosRankSum=-0.170;SOR=0.368;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9599C>T|p.Ser3200Leu|9599/33153|9599/33153|3200/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,2:16:45:45,0,418	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92163	.	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6630;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=-1.455;QD=11.36;ReadPosRankSum=0.327;SOR=0.551;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9566T>C|p.Ile3189Thr|9566/33153|9566/33153|3189/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:244,0,365	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92216	.	A	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.890;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=57.71;MQ0=0;MQRankSum=-3.854;QD=5.89;ReadPosRankSum=-0.781;SOR=1.718;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9513T>C|p.Asp3171Asp|9513/33153|9513/33153|3171/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,8:30:99:199,0,510	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92237	.	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.091;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-3.697;QD=5.68;ReadPosRankSum=1.225;SOR=1.551;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9492C>T|p.Phe3164Phe|9492/33153|9492/33153|3164/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,7:29:99:193,0,503	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92262	.	A	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=0;MQRankSum=-2.865;QD=6.31;ReadPosRankSum=0.596;SOR=0.763;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9467T>G|p.Ile3156Ser|9467/33153|9467/33153|3156/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,11:33:99:230,0,617	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92284	.	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.387;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=-3.057;QD=7.71;ReadPosRankSum=0.188;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9445C>T|p.His3149Tyr|9445/33153|9445/33153|3149/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,13:35:99:298,0,639	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92320	.	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-2.803;QD=6.37;ReadPosRankSum=0.159;SOR=0.673;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9409C>T|p.His3137Tyr|9409/33153|9409/33153|3137/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,13:37:99:264,0,742	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92340	.	CCT	C	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.283;QD=15.94;ReadPosRankSum=-0.337;SOR=0.622;ANN=C|frameshift_variant|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9387_9388delAG|p.Gly3130fs|9388/33153|9387/33153|3129/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:659,0,1269	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92422	.	T	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.744;SOR=0.602;ANN=A|stop_gained|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9307A>T|p.Arg3103*|9307/33153|9307/33153|3103/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,8:27:99:162,0,541	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92436	.	C	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.611;SOR=0.793;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9293G>T|p.Cys3098Phe|9293/33153|9293/33153|3098/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,9:30:99:193,0,573	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92580	.	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.485;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=-1.529;QD=6.99;ReadPosRankSum=0.517;SOR=0.654;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9149G>A|p.Arg3050His|9149/33153|9149/33153|3050/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,11:30:99:238,0,536	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92584	.	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.485;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=-1.594;QD=6.73;ReadPosRankSum=0.723;SOR=0.610;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9145A>G|p.Thr3049Ala|9145/33153|9145/33153|3049/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,11:31:99:237,0,556	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92622	.	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-2.746;QD=11.85;ReadPosRankSum=-0.070;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9107T>C|p.Ile3036Thr|9107/33153|9107/33153|3036/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:360,0,441	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92650	.	T	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-3.391;QD=10.11;ReadPosRankSum=0.844;SOR=0.956;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9079A>G|p.Arg3027Gly|9079/33153|9079/33153|3027/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,10:26:99:291,0,500	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92656	.	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-3.927;QD=8.11;ReadPosRankSum=1.866;SOR=0.593;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9073G>A|p.Gly3025Arg|9073/33153|9073/33153|3025/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,8:25:99:231,0,540	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92659	.	T	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-3.927;QD=7.95;ReadPosRankSum=1.808;SOR=0.593;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9070A>G|p.Met3024Val|9070/33153|9070/33153|3024/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,8:25:99:227,0,545	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92661	.	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-3.927;QD=8.03;ReadPosRankSum=1.692;SOR=0.593;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9068A>G|p.Lys3023Arg|9068/33153|9068/33153|3023/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,8:25:99:229,0,563	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92672	.	G	C	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-3.391;QD=9.30;ReadPosRankSum=0.501;SOR=0.495;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9057C>G|p.Phe3019Leu|9057/33153|9057/33153|3019/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,10:26:99:270,0,512	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92680	.	ATGT	A	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.06;MQ0=0;MQRankSum=-3.129;QD=19.41;RPA=3,2;RU=TGT;ReadPosRankSum=0.000;SOR=0.730;STR;ANN=A|conservative_inframe_deletion|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9046_9048delACA|p.Thr3016del|9048/33153|9046/33153|3016/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,11:28:99:542,0,768	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92702	.	T	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.06;MQ0=0;MQRankSum=-3.073;QD=9.17;ReadPosRankSum=-1.139;SOR=0.495;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.9027A>T|p.Ile3009Ile|9027/33153|9027/33153|3009/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,12:28:99:285,0,477	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92765	.	GCA	G	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=-0.961;QD=17.11;RPA=6,5;RU=CA;ReadPosRankSum=0.299;SOR=0.593;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.8962_8963delTG|p.Cys2988fs|8963/33153|8962/33153|2988/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:13,12:26:99:465,0,496	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92769	.	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=-1.003;QD=9.68;ReadPosRankSum=0.927;SOR=0.773;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.8960T>C|p.Val2987Ala|8960/33153|8960/33153|2987/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:280,0,404	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92797	.	CACACAT	C	817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.78;ReadPosRankSum=2.547;SOR=0.425;ANN=C|conservative_inframe_deletion|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.8926_8931delATGTGT|p.Met2976_Cys2977del|8931/33153|8926/33153|2976/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,10:25:99:855,0,1016	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	92870	.	G	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-2.153;SOR=0.646;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.8859C>A|p.Ser2953Arg|8859/33153|8859/33153|2953/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,5:15:93:93,0,269	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	94531	.	A	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-0.497;SOR=0.850;ANN=T|stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.7198T>A|p.Ter2400Lysext*?|7198/33153|7198/33153|2400/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:111,0,144	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95091	.	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=-1.979;QD=6.95;ReadPosRankSum=2.439;SOR=0.446;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.6638A>G|p.Tyr2213Cys|6638/33153|6638/33153|2213/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,8:24:99:195,0,554	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95164	.	C	T	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-0.572;QD=0.94;ReadPosRankSum=-1.010;SOR=0.473;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.6565G>A|p.Gly2189Arg|6565/33153|6565/33153|2189/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,4:18:45:45,0,433	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95589	.	T	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.447;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.27;MQ0=1;MQRankSum=2.162;QD=8.99;ReadPosRankSum=-1.597;SOR=0.998;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.6140A>C|p.Gln2047Pro|6140/33153|6140/33153|2047/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,12:30:99:298,0,494	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95729	.	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=0;MQRankSum=-3.638;QD=15.87;ReadPosRankSum=-0.438;SOR=0.498;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.6000G>A|p.Ser2000Ser|6000/33153|6000/33153|2000/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,14:25:99:425,0,286	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95737	.	T	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=0;MQRankSum=-4.149;QD=14.20;ReadPosRankSum=0.549;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5992A>T|p.Thr1998Ser|5992/33153|5992/33153|1998/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,12:24:99:369,0,317	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95851	.	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQ0=0;MQRankSum=-3.607;QD=11.51;ReadPosRankSum=0.367;SOR=0.818;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5878A>G|p.Lys1960Glu|5878/33153|5878/33153|1960/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,15:35:99:431,0,554	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95892	.	G	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.15;MQ0=0;MQRankSum=-2.158;QD=8.99;ReadPosRankSum=-0.253;SOR=0.660;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5837C>T|p.Ala1946Val|5837/33153|5837/33153|1946/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:325,0,448	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95920	.	G	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.549;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=54.42;MQ0=0;MQRankSum=-2.857;QD=8.90;ReadPosRankSum=1.210;SOR=0.522;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5809C>A|p.Pro1937Thr|5809/33153|5809/33153|1937/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,13:32:99:313,0,488	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	95955	.	C	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=0;MQRankSum=-4.404;QD=13.93;ReadPosRankSum=-0.732;SOR=0.513;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5774G>T|p.Ser1925Ile|5774/33153|5774/33153|1925/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,15:31:99:460,0,442	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96200	.	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=1.973;QD=13.67;ReadPosRankSum=-0.783;SOR=0.941;ANN=C|stop_retained_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5529A>G|p.Ter1843Ter|5529/33153|5529/33153|1843/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:411,0,361	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96211	.	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.598;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=1.246;QD=14.99;ReadPosRankSum=-0.960;SOR=1.021;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5518C>T|p.Leu1840Leu|5518/33153|5518/33153|1840/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:418,0,286	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96242	.	A	G	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.660;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.24;ReadPosRankSum=0.725;SOR=1.093;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5487T>C|p.Cys1829Cys|5487/33153|5487/33153|1829/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:370,0,252	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96384	.	T	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-2.998;QD=11.44;ReadPosRankSum=-0.991;SOR=1.179;ANN=G|stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5345A>C|p.Ter1782Serext*?|5345/33153|5345/33153|1782/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:280,0,269	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96491	.	A	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-0.992;QD=16.53;ReadPosRankSum=1.051;SOR=0.339;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5238T>C|p.Ser1746Ser|5238/33153|5238/33153|1746/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,17:27:99:458,0,188	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96713	.	A	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-2.880;QD=17.72;ReadPosRankSum=0.278;SOR=0.509;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.5016T>A|p.Ser1672Ser|5016/33153|5016/33153|1672/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,18:26:99:489,0,265	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96752	.	T	C	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=0;MQRankSum=-2.111;QD=20.16;ReadPosRankSum=-0.067;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4977A>G|p.Pro1659Pro|4977/33153|4977/33153|1659/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,16:23:99:492,0,189	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96778	.	GATGCTAAC	G	1579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=-3.942;QD=25.76;ReadPosRankSum=0.291;SOR=0.818;ANN=G|frameshift_variant&stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4943_4950delGTTAGCAT|p.Cys1648fs|4950/33153|4943/33153|1648/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:8,15:24:99:1617,0,830	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96886	.	G	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.598;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=0;MQRankSum=-2.610;QD=12.05;ReadPosRankSum=-1.531;SOR=0.946;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4843C>G|p.Arg1615Gly|4843/33153|4843/33153|1615/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,8:17:99:233,0,309	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96966	.	T	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=0;MQRankSum=-2.886;QD=5.76;ReadPosRankSum=0.937;SOR=0.934;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4763A>C|p.Gln1588Pro|4763/33153|4763/33153|1588/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,5:18:99:132,0,342	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96971	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.37;MQ0=0;MQRankSum=-2.991;QD=4.20;ReadPosRankSum=1.391;SOR=1.022;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4758C>T|p.Asn1586Asn|4758/33153|4758/33153|1586/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,5:19:99:108,0,354	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	96984	.	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=0;MQRankSum=-2.886;QD=5.65;ReadPosRankSum=0.642;SOR=0.859;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4745G>A|p.Cys1582Tyr|4745/33153|4745/33153|1582/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,5:18:99:130,0,337	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97071	.	A	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.690;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=0;MQRankSum=-2.027;QD=4.32;ReadPosRankSum=0.000;SOR=0.814;ANN=T|stop_gained|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4658T>A|p.Leu1553*|4658/33153|4658/33153|1553/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,7:27:99:145,0,677	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97074	.	C	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.98;MQ0=0;MQRankSum=-2.426;QD=2.95;ReadPosRankSum=0.438;SOR=0.610;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4655G>T|p.Cys1552Phe|4655/33153|4655/33153|1552/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,6:28:99:108,0,697	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97108	.	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=0;MQRankSum=-0.309;QD=7.03;ReadPosRankSum=-0.345;SOR=0.784;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4621T>C|p.Trp1541Arg|4621/33153|4621/33153|1541/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,9:28:99:225,0,539	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97202	.	A	G	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.460;QD=7.07;ReadPosRankSum=-0.319;SOR=0.616;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4527T>C|p.Ser1509Ser|4527/33153|4527/33153|1509/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,8:27:99:219,0,627	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97227	.	A	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-2.870;QD=8.47;ReadPosRankSum=-0.551;SOR=1.460;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4502T>C|p.Val1501Ala|4502/33153|4502/33153|1501/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,10:29:99:274,0,561	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97228	.	C	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-2.941;QD=7.99;ReadPosRankSum=-0.331;SOR=1.329;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4501G>C|p.Val1501Leu|4501/33153|4501/33153|1501/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,10:30:99:268,0,640	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97386	.	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=-3.463;QD=8.40;ReadPosRankSum=-0.774;SOR=0.793;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4343A>G|p.Gln1448Arg|4343/33153|4343/33153|1448/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,15:37:99:339,0,675	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97591	.	G	A	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.099;SOR=0.551;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4138C>T|p.Leu1380Leu|4138/33153|4138/33153|1380/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4901G>A|||||4901|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,2:13:57:57,0,270	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97598	.	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.593;SOR=0.765;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4131G>A|p.Pro1377Pro|4131/33153|4131/33153|1377/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4894C>T|||||4894|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,3:13:60:60,0,272	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97631	.	GTA	G	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-1.033;SOR=0.883;ANN=G|frameshift_variant|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.4096_4097delTA|p.Tyr1366fs|4097/33153|4096/33153|1366/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4860_-4859delTA|||||4860|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:7,5:12:99:241,0,352	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97780	.	C	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.35;ReadPosRankSum=-2.100;SOR=1.329;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3949G>T|p.Gly1317Cys|3949/33153|3949/33153|1317/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4712C>A|||||4712|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,6:8:30:159,0,30	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97792	.	T	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.97;ReadPosRankSum=-1.981;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3937A>T|p.Ile1313Phe|3937/33153|3937/33153|1313/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4700T>A|||||4700|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,5:7:30:154,0,30	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97850	.	A	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.82;ReadPosRankSum=0.566;SOR=1.022;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3879T>G|p.Ile1293Met|3879/33153|3879/33153|1293/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4642A>C|||||4642|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,5:7:66:153,0,66	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97873	.	A	AT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.53;ReadPosRankSum=1.122;SOR=0.160;ANN=AT|frameshift_variant|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3855_3856insA|p.Phe1286fs|3855/33153|3855/33153|1285/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,AT|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4619_-4618insT|||||4618|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:3,6:9:99:159,0,109	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97874	.	A	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=9;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.97;ReadPosRankSum=1.122;SOR=0.160;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3855T>A|p.Asn1285Lys|3855/33153|3855/33153|1285/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4618A>T|||||4618|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:3,6:9:99:190,0,103	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97898	.	A	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.43;ReadPosRankSum=1.158;SOR=0.368;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3831T>A|p.Asn1277Lys|3831/33153|3831/33153|1277/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4594A>T|||||4594|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,6:11:99:187,0,144	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	97928	.	C	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=0.962;QD=10.27;ReadPosRankSum=0.498;SOR=0.760;ANN=G|stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3801G>C|p.Ter1267Tyrext*?|3801/33153|3801/33153|1267/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4564C>G|||||4564|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:244,0,328	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98032	.	G	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=1.105;QD=8.52;ReadPosRankSum=0.018;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3697C>A|p.Leu1233Ile|3697/33153|3697/33153|1233/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4460G>T|||||4460|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,12:34:99:318,0,524	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98359	.	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.25;MQ0=0;MQRankSum=-0.286;QD=11.28;ReadPosRankSum=0.503;SOR=0.751;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3370G>A|p.Glu1124Lys|3370/33153|3370/33153|1124/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4133C>T|||||4133|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,16:38:99:457,0,595	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98418	.	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.381;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.271;HaplotypeScore=12.6314;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=-1.468;QD=8.99;ReadPosRankSum=-1.120;SOR=0.465;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3311C>A|p.Ala1104Asp|3311/33153|3311/33153|1104/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4074G>T|||||4074|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:361,0,627	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98426	.	TTATG	T	666.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.87;MQ0=0;MQRankSum=-2.362;QD=16.13;ReadPosRankSum=0.434;SOR=0.502;ANN=T|frameshift_variant&stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3299_3302delCATA|p.Thr1100fs|3302/33153|3299/33153|1100/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-4065_-4062delTATG|||||4065|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:20,11:32:99:704,0,1292	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98617	.	G	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.42;MQ0=0;MQRankSum=-0.568;QD=12.56;ReadPosRankSum=-0.415;SOR=1.417;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3112C>T|p.Leu1038Leu|3112/33153|3112/33153|1038/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3875G>A|||||3875|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,15:28:99:380,0,372	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98645	.	A	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.834;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=47.09;MQ0=2;MQRankSum=-0.660;QD=12.55;ReadPosRankSum=-0.027;SOR=1.518;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3084T>A|p.Asp1028Glu|3084/33153|3084/33153|1028/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3847A>T|||||3847|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:367,0,312	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98674	.	T	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=50.61;MQ0=1;MQRankSum=-0.450;QD=13.53;ReadPosRankSum=0.536;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.3055A>T|p.Arg1019Trp|3055/33153|3055/33153|1019/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3818T>A|||||3818|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:407,0,340	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98762	.	G	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-0.103;QD=8.24;ReadPosRankSum=0.115;SOR=0.709;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2967C>G|p.Leu989Leu|2967/33153|2967/33153|989/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3730G>C|||||3730|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,13:28:99:259,0,452	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	98963	.	C	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.094;SOR=0.495;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2766G>T|p.Gln922His|2766/33153|2766/33153|922/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3529C>A|||||3529|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,9:17:99:217,0,281	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99001	.	T	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.685;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.78;ReadPosRankSum=-0.352;SOR=0.307;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2728A>T|p.Arg910Trp|2728/33153|2728/33153|910/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3491T>A|||||3491|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:239,0,474	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99011	.	A	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.619;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.849;SOR=0.543;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2718T>C|p.Thr906Thr|2718/33153|2718/33153|906/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3481A>G|||||3481|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:249,0,441	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99124	.	T	G	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-3.112;QD=11.74;ReadPosRankSum=-0.443;SOR=1.179;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2605A>C|p.Ser869Arg|2605/33153|2605/33153|869/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3368T>G|||||3368|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:451,0,500	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99130	.	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=0;MQRankSum=-3.253;QD=12.94;ReadPosRankSum=-0.730;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2599T>C|p.Trp867Arg|2599/33153|2599/33153|867/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3362A>G|||||3362|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:507,0,473	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99180	.	A	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=52.14;MQ0=0;MQRankSum=-3.243;QD=12.73;ReadPosRankSum=0.538;SOR=1.127;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2549T>C|p.Leu850Pro|2549/33153|2549/33153|850/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3312A>G|||||3312|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:461,0,425	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99216	.	C	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9148;MLEAC=1;MLEAF=0.500;MQ=48.33;MQ0=0;MQRankSum=-4.046;QD=12.99;ReadPosRankSum=1.215;SOR=0.818;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2513G>C|p.Gly838Ala|2513/33153|2513/33153|838/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3276C>G|||||3276|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,14:27:99:379,0,415	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99270	.	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.988;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=49.53;MQ0=0;MQRankSum=-4.191;QD=11.55;ReadPosRankSum=-1.293;SOR=1.316;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2459G>A|p.Ser820Asn|2459/33153|2459/33153|820/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3222C>T|||||3222|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,12:28:99:340,0,486	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99397	.	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.315;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=53.27;MQ0=2;MQRankSum=-2.207;QD=12.07;ReadPosRankSum=0.352;SOR=1.128;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2332G>A|p.Val778Ile|2332/33153|2332/33153|778/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3095C>T|||||3095|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,23:42:99:523,0,516	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99450	.	T	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.236;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=57.70;MQ0=0;MQRankSum=-1.612;QD=13.74;ReadPosRankSum=0.815;SOR=0.818;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2279A>G|p.Gln760Arg|2279/33153|2279/33153|760/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-3042T>C|||||3042|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,20:39:99:564,0,565	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99589	.	G	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.558;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.02;MQ0=0;MQRankSum=-1.845;QD=12.29;ReadPosRankSum=-1.953;SOR=0.454;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2140C>G|p.Arg714Gly|2140/33153|2140/33153|714/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2903G>C|||||2903|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:360,0,334	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99636	.	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.71;MQ0=1;MQRankSum=-3.343;QD=9.94;ReadPosRankSum=1.198;SOR=0.818;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2093T>C|p.Ile698Thr|2093/33153|2093/33153|698/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2856A>G|||||2856|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:237,0,367	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99684	.	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=3.9130;MLEAC=1;MLEAF=0.500;MQ=55.98;MQ0=1;MQRankSum=-3.835;QD=5.49;ReadPosRankSum=-0.050;SOR=1.153;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2045G>A|p.Arg682His|2045/33153|2045/33153|682/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2808C>T|||||2808|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:127,0,368	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99719	.	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=53.06;MQ0=1;MQRankSum=-4.142;QD=9.94;ReadPosRankSum=-0.464;SOR=1.402;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.2010C>T|p.Arg670Arg|2010/33153|2010/33153|670/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2773G>A|||||2773|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:237,0,328	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99745	.	A	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=51.05;MQ0=2;MQRankSum=-4.437;QD=8.99;ReadPosRankSum=0.466;SOR=0.399;ANN=C|stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1984T>G|p.Ter662Gluext*?|1984/33153|1984/33153|662/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2747A>C|||||2747|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:253,0,331	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99776	.	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=50.85;MQ0=1;MQRankSum=-3.788;QD=9.99;ReadPosRankSum=1.023;SOR=0.743;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1953C>T|p.Ser651Ser|1953/33153|1953/33153|651/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2716G>A|||||2716|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,11:23:99:258,0,297	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99833	.	A	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;DP=26;Dels=0.00;ExcessHet=3.0103;FS=6.437;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=49.99;MQ0=1;MQRankSum=-3.318;QD=11.72;ReadPosRankSum=0.301;SOR=0.616;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1896T>G|p.Cys632Trp|1896/33153|1896/33153|632/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2659A>C|||||2659|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,15:26:99:333,0,318	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	99884	.	AC	A	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.70;MQ0=0;MQRankSum=-1.132;QD=10.54;RPA=5,4;RU=C;ReadPosRankSum=-0.193;SOR=0.527;STR;ANN=A|frameshift_variant|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1844delG|p.Gly615fs|1844/33153|1844/33153|615/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2607delC|||||2607|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS;LOF=(EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|1|1.00)	GT:AD:DP:GQ:PL	0/1:12,8:20:99:248,0,386	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100011	.	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.036;HaplotypeScore=2.5659;MLEAC=1;MLEAF=0.500;MQ=45.32;MQ0=2;MQRankSum=-4.151;QD=10.70;ReadPosRankSum=0.297;SOR=1.322;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1718C>T|p.Ser573Leu|1718/33153|1718/33153|573/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2481G>A|||||2481|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,14:25:99:285,0,258	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100033	.	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.79;MQ0=1;MQRankSum=-3.073;QD=9.72;ReadPosRankSum=0.569;SOR=1.402;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1696A>G|p.Ile566Val|1696/33153|1696/33153|566/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2459T>C|||||2459|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:242,0,297	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100034	.	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.79;MQ0=1;MQRankSum=-3.073;QD=9.76;ReadPosRankSum=0.604;SOR=1.402;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1695C>T|p.Ile565Ile|1695/33153|1695/33153|565/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2458G>A|||||2458|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:243,0,297	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100044	.	G	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.72;MQ0=2;MQRankSum=-2.732;QD=9.54;ReadPosRankSum=-0.823;SOR=1.140;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1685C>A|p.Thr562Asn|1685/33153|1685/33153|562/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2448G>T|||||2448|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:219,0,258	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100092	.	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.41;MQ0=2;MQRankSum=-3.005;QD=6.46;ReadPosRankSum=1.008;SOR=2.030;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1637C>T|p.Thr546Met|1637/33153|1637/33153|546/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2400G>A|||||2400|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,7:19:99:151,0,299	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100360	.	A	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DP=24;Dels=0.00;ExcessHet=3.0103;FS=8.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.75;MQ0=17;MQRankSum=0.792;QD=4.82;ReadPosRankSum=-1.204;SOR=3.236;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1369T>G|p.Cys457Gly|1369/33153|1369/33153|457/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2132A>C|||||2132|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,9:24:94:144,0,94	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100443	.	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7471;MLEAC=1;MLEAF=0.500;MQ=42.26;MQ0=6;MQRankSum=-0.728;QD=12.07;ReadPosRankSum=-0.465;SOR=0.412;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1286A>G|p.Asn429Ser|1286/33153|1286/33153|429/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2049T>C|||||2049|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,13:25:99:330,0,190	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100448	.	C	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=6.7463;MLEAC=1;MLEAF=0.500;MQ=44.66;MQ0=5;MQRankSum=0.862;QD=2.99;ReadPosRankSum=-0.583;SOR=1.432;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1281G>T|p.Leu427Phe|1281/33153|1281/33153|427/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-2044C>A|||||2044|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,4:26:99:106,0,536	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100550	.	C	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-0.024;QD=3.87;ReadPosRankSum=-0.322;SOR=0.970;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1179G>T|p.Val393Val|1179/33153|1179/33153|393/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1942C>A|||||1942|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,10:39:99:179,0,837	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100590	.	A	AC	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DP=37;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=0;MQRankSum=-2.323;QD=18.64;RPA=2,3;RU=C;ReadPosRankSum=-1.440;SOR=0.819;STR;ANN=AC|frameshift_variant|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.1138dupG|p.Val380fs|1138/33153|1138/33153|380/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,AC|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1902_-1901insC|||||1901|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,19:37:99:671,0,508	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100742	.	C	G	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=-1.723;QD=13.11;ReadPosRankSum=-0.576;SOR=0.936;ANN=G|stop_lost|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.987G>C|p.Ter329Tyrext*?|987/33153|987/33153|329/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1750C>G|||||1750|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:356,0,420	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100747	.	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=-1.692;QD=10.88;ReadPosRankSum=-0.537;SOR=0.951;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.982A>G|p.Arg328Gly|982/33153|982/33153|328/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1745T>C|||||1745|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,12:27:99:322,0,438	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100759	.	A	G	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=-2.172;QD=13.11;ReadPosRankSum=-1.716;SOR=0.892;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.970T>C|p.Trp324Arg|970/33153|970/33153|324/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1733A>G|||||1733|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:356,0,389	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100777	.	C	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-1.520;QD=10.17;ReadPosRankSum=-0.924;SOR=0.473;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.952G>C|p.Glu318Gln|952/33153|952/33153|318/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1715C>G|||||1715|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,10:22:99:252,0,361	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100782	.	T	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=0;MQRankSum=-1.378;QD=11.34;ReadPosRankSum=-0.606;SOR=0.399;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.947A>T|p.Gln316Leu|947/33153|947/33153|316/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1710T>A|||||1710|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,10:20:99:255,0,302	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100815	.	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=0.775;QD=5.75;ReadPosRankSum=2.222;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.914T>C|p.Met305Thr|914/33153|914/33153|305/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1677A>G|||||1677|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,5:17:99:126,0,402	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100857	.	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DP=16;Dels=0.00;ExcessHet=3.0103;FS=1.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-0.877;QD=8.74;ReadPosRankSum=0.597;SOR=1.329;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.872G>A|p.Arg291Lys|872/33153|872/33153|291/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1635C>T|||||1635|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:168,0,344	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100861	.	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-0.877;QD=8.05;ReadPosRankSum=0.490;SOR=1.329;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.868C>T|p.Pro290Ser|868/33153|868/33153|290/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1631G>A|||||1631|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:157,0,333	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100907	.	T	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.68;MQ0=0;MQRankSum=-1.718;QD=3.26;ReadPosRankSum=0.053;SOR=0.693;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.822A>G|p.Val274Val|822/33153|822/33153|274/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1585T>C|||||1585|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,4:18:87:87,0,413	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100926	.	G	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-2.348;QD=3.41;ReadPosRankSum=-0.880;SOR=1.022;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.803C>G|p.Pro268Arg|803/33153|803/33153|268/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1566G>C|||||1566|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,5:19:93:93,0,391	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100942	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-2.724;QD=1.15;ReadPosRankSum=-0.350;SOR=0.582;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.787G>A|p.Val263Ile|787/33153|787/33153|263/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1550C>T|||||1550|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,4:19:50:50,0,423	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100957	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-2.514;QD=2.66;ReadPosRankSum=0.041;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.772T>C|p.Ser258Pro|772/33153|772/33153|258/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1535A>G|||||1535|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,5:21:84:84,0,449	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	100961	.	G	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=-2.433;QD=3.09;ReadPosRankSum=-0.131;SOR=0.877;ANN=T|stop_gained|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.768C>A|p.Tyr256*|768/33153|768/33153|256/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1531G>T|||||1531|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,5:20:90:90,0,422	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101059	.	T	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.431;QD=5.48;ReadPosRankSum=-0.901;SOR=0.368;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.670A>C|p.Ser224Arg|670/33153|670/33153|224/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1433T>G|||||1433|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,4:12:94:94,0,227	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101066	.	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.431;QD=6.15;ReadPosRankSum=-0.325;SOR=0.368;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.663C>T|p.Asn221Asn|663/33153|663/33153|221/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1426G>A|||||1426|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,4:12:99:102,0,229	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101076	.	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.431;QD=5.90;ReadPosRankSum=-0.163;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.653C>T|p.Thr218Ile|653/33153|653/33153|218/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1416G>A|||||1416|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,4:12:99:99,0,249	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101207	.	G	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=10;Dels=0.00;ExcessHet=3.0103;FS=13.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-2.412;SOR=3.588;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.522C>A|p.Phe174Leu|522/33153|522/33153|174/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1285G>T|||||1285|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,5:10:99:164,0,181	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101276	.	T	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.317;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.577;SOR=3.258;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.453A>G|p.Ile151Met|453/33153|453/33153|151/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1216T>C|||||1216|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:191,0,335	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101277	.	A	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.317;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.577;SOR=3.258;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.452T>C|p.Ile151Thr|452/33153|452/33153|151/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1215A>G|||||1215|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:167,0,340	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101467	.	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.97;MQ0=2;MQRankSum=0.531;QD=6.40;ReadPosRankSum=-0.204;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.262G>A|p.Val88Ile|262/33153|262/33153|88/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-1025C>T|||||1025|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,4:12:99:105,0,179	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101496	.	G	C	311.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=2;QD=25.98;SOR=1.085;ANN=C|stop_gained|HIGH|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.233C>G|p.Ser78*|233/33153|233/33153|78/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-996G>C|||||996|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,10:12:24:340,24,0	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	101595	.	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.873;SOR=0.595;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding|1/1|c.134A>G|p.Asn45Ser|134/33153|134/33153|45/11050||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding||c.-897T>C|||||897|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:143,0,178	scaffold149229_cov62	GLEAN	mRNA	68576	101728	0.97	-	.	ID=Soaet10008916
scaffold149229_cov62	102691	.	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.908;QD=6.71;ReadPosRankSum=-0.542;SOR=0.495;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.200G>A|p.Cys67Tyr|200/2127|200/2127|67/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-963C>T|||||963|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,4:11:99:102,0,227	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102714	.	T	A	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-1.643;QD=2.21;ReadPosRankSum=1.859;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.223T>A|p.Tyr75Asn|223/2127|223/2127|75/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-986A>T|||||986|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,3:13:57:57,0,302	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102727	.	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-1.097;QD=3.16;ReadPosRankSum=2.093;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.236T>C|p.Ile79Thr|236/2127|236/2127|79/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-999A>G|||||999|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,3:12:63:63,0,232	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102751	.	C	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-1.020;QD=2.83;ReadPosRankSum=0.148;SOR=0.527;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.260C>G|p.Ser87Cys|260/2127|260/2127|87/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1023G>C|||||1023|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,4:13:65:65,0,237	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102781	.	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.91;MQ0=1;MQRankSum=-0.967;QD=5.67;ReadPosRankSum=-1.329;SOR=0.368;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.290G>A|p.Cys97Tyr|290/2127|290/2127|97/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1053C>T|||||1053|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,4:13:99:102,0,229	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102834	.	C	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQ0=1;MQRankSum=-2.205;QD=7.32;ReadPosRankSum=1.590;SOR=0.804;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.343C>A|p.Leu115Met|343/2127|343/2127|115/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1106G>T|||||1106|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,5:15:99:138,0,268	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102858	.	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=1;MQRankSum=-2.981;QD=6.21;ReadPosRankSum=1.758;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.367A>G|p.Ile123Val|367/2127|367/2127|123/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1130T>C|||||1130|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,7:18:99:140,0,301	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102908	.	T	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.48;MQ0=0;MQRankSum=-1.336;QD=4.72;ReadPosRankSum=0.980;SOR=0.646;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.417T>C|p.Phe139Phe|417/2127|417/2127|139/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1180A>G|||||1180|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,5:15:99:99,0,281	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102918	.	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.91;MQ0=0;MQRankSum=-1.915;QD=5.27;ReadPosRankSum=0.192;SOR=0.905;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.427A>G|p.Arg143Gly|427/2127|427/2127|143/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1190T>C|||||1190|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,5:14:99:102,0,262	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	102981	.	T	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=1;MQRankSum=-1.562;QD=5.21;ReadPosRankSum=-0.980;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.490T>A|p.Phe164Ile|490/2127|490/2127|164/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1253A>T|||||1253|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,3:13:96:96,0,268	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103130	.	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.21;ReadPosRankSum=-0.295;SOR=1.402;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.639C>T|p.Tyr213Tyr|639/2127|639/2127|213/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1402G>A|||||1402|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:265,0,130	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103204	.	A	G	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.819;QD=14.74;ReadPosRankSum=0.494;SOR=0.538;ANN=G|stop_lost|HIGH|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.713A>G|p.Ter238Trpext*?|713/2127|713/2127|238/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1476T>C|||||1476|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:500,0,354	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103209	.	CATCCCTTGTGTA	C	2663.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.819;QD=20.81;ReadPosRankSum=0.266;SOR=0.538;ANN=C|disruptive_inframe_deletion|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.719_730delATCCCTTGTGTA|p.His240_Ile244delinsLeu|719/2127|719/2127|240/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1493_-1482delTACACAAGGGAT|||||1482|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,18:32:99:2701,0,2062	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103236	.	C	T	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.919;QD=14.21;ReadPosRankSum=-0.122;SOR=0.569;ANN=T|stop_gained|HIGH|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.745C>T|p.Gln249*|745/2127|745/2127|249/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1508G>A|||||1508|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,19:37:99:554,0,441	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103302	.	C	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.896;QD=13.26;ReadPosRankSum=-1.521;SOR=0.675;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.811C>T|p.His271Tyr|811/2127|811/2127|271/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1574G>A|||||1574|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:532,0,463	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103474	.	C	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=51.89;MQ0=2;MQRankSum=-2.067;QD=7.47;ReadPosRankSum=0.318;SOR=0.627;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.983C>A|p.Pro328His|983/2127|983/2127|328/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1746G>T|||||1746|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,14:29:99:245,0,381	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103572	.	A	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=2;MQRankSum=-4.498;QD=7.76;ReadPosRankSum=-1.160;SOR=0.714;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1081A>G|p.Ile361Val|1081/2127|1081/2127|361/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1844T>C|||||1844|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,12:26:99:230,0,439	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103639	.	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3689;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=1;MQRankSum=-3.301;QD=4.79;ReadPosRankSum=0.483;SOR=0.804;ANN=A|stop_gained|HIGH|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1148G>A|p.Trp383*|1148/2127|1148/2127|383/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1911C>T|||||1911|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:124,0,268	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103643	.	C	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4531;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=1;MQRankSum=-3.577;QD=5.08;ReadPosRankSum=1.013;SOR=0.859;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1152C>T|p.Asn384Asn|1152/2127|1152/2127|384/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1915G>A|||||1915|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,7:22:99:140,0,395	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103644	.	T	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=1;MQRankSum=-3.577;QD=5.40;ReadPosRankSum=1.052;SOR=0.859;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1153T>G|p.Ser385Ala|1153/2127|1153/2127|385/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1916A>C|||||1916|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,7:22:99:147,0,355	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103678	.	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.848;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=53.28;MQ0=0;MQRankSum=-3.191;QD=8.42;ReadPosRankSum=-1.800;SOR=0.855;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1187C>T|p.Thr396Met|1187/2127|1187/2127|396/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1950G>A|||||1950|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,10:21:99:205,0,324	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103721	.	T	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.23;MQ0=0;MQRankSum=-2.236;QD=7.07;ReadPosRankSum=1.055;SOR=0.782;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1230T>C|p.Phe410Phe|1230/2127|1230/2127|410/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1993A>G|||||1993|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:198,0,439	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103722	.	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=-2.085;QD=7.23;ReadPosRankSum=0.630;SOR=0.601;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1231T>C|p.Phe411Leu|1231/2127|1231/2127|411/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-1994A>G|||||1994|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,11:25:99:209,0,433	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103833	.	A	AACT	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;DP=20;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-1.258;QD=16.34;ReadPosRankSum=-0.912;SOR=0.188;ANN=AACT|disruptive_inframe_insertion|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1342_1343insACT|p.Ile448delinsAsnPhe|1343/2127|1343/2127|448/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,AACT|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-2106_-2105insAGT|||||2106|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:364,0,789	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	103846	.	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.483;SOR=0.527;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1355G>A|p.Ser452Asn|1355/2127|1355/2127|452/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-2118C>T|||||2118|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,6:20:99:169,0,379	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	104046	.	T	G	330.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.609;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=0.628;QD=25.45;ReadPosRankSum=1.878;SOR=1.270;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1555T>G|p.Ser519Ala|1555/2127|1555/2127|519/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-2318A>C|||||2318|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,11:13:2:357,2,0	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	104186	.	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=6;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.29;ReadPosRankSum=1.834;SOR=2.303;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_102492_104618|GENE_EXON_scaffold149229_cov62_102492_104618|transcript|Soaet10008917|protein_coding|1/1|c.1695G>T|p.Glu565Asp|1695/2127|1695/2127|565/708||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_68576_101728|GENE_EXON_scaffold149229_cov62_68576_101728|transcript|Soaet10008916|protein_coding||c.-2458C>A|||||2458|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,77	scaffold149229_cov62	GLEAN	mRNA	102492	104618	0.97	+	.	ID=Soaet10008917
scaffold149229_cov62	136596	.	A	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=0;MQRankSum=1.076;QD=10.36;ReadPosRankSum=-1.003;SOR=1.115;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_136439_136946|GENE_EXON_scaffold149229_cov62_136439_136946|transcript|Soaet10008920|protein_coding|2/2|c.446T>G|p.Phe149Cys|446/603|446/603|149/200||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.*1661T>G|||||1661|	GT:AD:DP:GQ:PL	0/1:18,9:27:99:308,0,426	scaffold149229_cov62	GLEAN	mRNA	136439	138201	0.61	-	.	ID=Soaet10008920
scaffold149229_cov62	136732	.	C	T	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.23;ReadPosRankSum=0.583;SOR=0.714;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_136439_136946|GENE_EXON_scaffold149229_cov62_136439_136946|transcript|Soaet10008920|protein_coding|2/2|c.310G>A|p.Val104Ile|310/603|310/603|104/200||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.*1525G>A|||||1525|	GT:AD:DP:GQ:PL	0/1:10,15:25:99:434,0,331	scaffold149229_cov62	GLEAN	mRNA	136439	138201	0.61	-	.	ID=Soaet10008920
scaffold149229_cov62	137225	.	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.73;ReadPosRankSum=-2.071;SOR=0.916;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.*1032A>G|||||1032|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_136439_136946|GENE_EXON_scaffold149229_cov62_136439_136946|transcript|Soaet10008920|protein_coding|1/1|c.96-279A>G||||||	GT:AD:DP:GQ:PL	0/1:4,8:12:99:265,0,134	scaffold149229_cov62	GLEAN	mRNA	136439	138201	0.61	-	.	ID=Soaet10008920
scaffold149229_cov62	143014	.	T	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.935;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.87;ReadPosRankSum=-1.821;SOR=1.639;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_136439_136946|GENE_EXON_scaffold149229_cov62_136439_136946|transcript|Soaet10008920|protein_coding||c.-4813A>T|||||4813|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding||c.-3949T>A|||||3949|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding|2/2|c.1638+13A>T||||||	GT:AD:DP:GQ:PL	0/1:12,12:24:99:409,0,391	scaffold149229_cov62	GLEAN	mRNA	138257	144952	0.96	-	.	ID=Soaet10008921
scaffold149229_cov62	143015	.	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.935;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-1.850;SOR=1.639;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_136439_136946|GENE_EXON_scaffold149229_cov62_136439_136946|transcript|Soaet10008920|protein_coding||c.-4814G>A|||||4814|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding||c.-3948C>T|||||3948|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding|2/2|c.1638+12G>A||||||	GT:AD:DP:GQ:PL	0/1:12,12:24:99:408,0,396	scaffold149229_cov62	GLEAN	mRNA	138257	144952	0.96	-	.	ID=Soaet10008921
scaffold149229_cov62	147518	.	T	C	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.036;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.18;ReadPosRankSum=1.023;SOR=1.122;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.-2566A>G|||||2566|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|1/11|c.266-224T>C||||||	GT:AD:DP:GQ:PL	0/1:10,11:21:99:326,0,286	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	147862	.	G	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-1.270;SOR=0.941;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.-2910C>A|||||2910|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|2/11|c.336+50G>T||||||	GT:AD:DP:GQ:PL	0/1:12,7:19:99:209,0,334	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	148128	.	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.835;SOR=0.791;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.-3176G>A|||||3176|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|2/11|c.336+316C>T||||||	GT:AD:DP:GQ:PL	0/1:13,9:22:99:232,0,361	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	149165	.	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.15;ReadPosRankSum=-0.753;SOR=0.728;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.-4213C>T|||||4213|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|3/11|c.416-148G>A||||||	GT:AD:DP:GQ:PL	0/1:2,10:12:54:282,0,54	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	149599	.	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-0.753;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.-4647C>T|||||4647|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|5/11|c.550+56G>A||||||	GT:AD:DP:GQ:PL	0/1:8,6:14:99:218,0,186	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	149850	.	GT	G	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DP=26;ExcessHet=3.0103;FS=6.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.26;RPA=2,1;RU=T;ReadPosRankSum=-0.431;SOR=1.225;STR;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_138257_142927|GENE_EXON_scaffold149229_cov62_138257_142927|transcript|Soaet10008921|protein_coding||c.-4899delA|||||4899|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|5/11|c.551-128delT||||||	GT:AD:DP:GQ:PL	0/1:17,9:26:99:304,0,643	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	150182	.	T	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9117;MLEAC=1;MLEAF=0.500;MQ=49.35;MQ0=10;MQRankSum=1.076;QD=4.43;ReadPosRankSum=0.747;SOR=0.746;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|6/11|c.627+127T>A||||||	GT:AD:DP:GQ:PL	0/1:27,10:37:99:192,0,447	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	150184	.	T	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.4890;MLEAC=1;MLEAF=0.500;MQ=49.35;MQ0=10;MQRankSum=1.076;QD=2.70;ReadPosRankSum=0.978;SOR=0.675;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|6/11|c.627+129T>A||||||	GT:AD:DP:GQ:PL	0/1:28,9:37:99:128,0,384	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	151421	.	T	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.411;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|9/11|c.839+22T>A||||||	GT:AD:DP:GQ:PL	0/1:6,4:10:90:90,0,179	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	151495	.	ACTTTTTCTGAATAAACAAAGTAGT	A	1496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DP=13;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.01;RPA=2,1;RU=CTTTTTCTGAATAAACAAAGTAGT;ReadPosRankSum=-0.087;SOR=1.802;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|9/11|c.839+97_839+120delCTTTTTCTGAATAAACAAAGTAGT||||||	GT:AD:DP:GQ:PL	0/1:5,6:13:99:1534,0,1209	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	152057	.	T	C	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.477;SOR=0.915;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|9/11|c.840-211T>C||||||	GT:AD:DP:GQ:PL	0/1:14,17:31:99:429,0,364	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	152112	.	CG	C	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;DP=30;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.86;ReadPosRankSum=0.000;SOR=1.310;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|9/11|c.840-155delG||||||	GT:AD:DP:GQ:PL	0/1:13,17:30:99:543,0,500	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	152115	.	C	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;DP=31;Dels=0.03;ExcessHet=3.0103;FS=1.510;HaplotypeScore=16.4306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.312;SOR=1.123;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|9/11|c.840-153C>A||||||	GT:AD:DP:GQ:PL	0/1:14,16:30:99:318,0,398	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	152227	.	T	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.75;ReadPosRankSum=-0.049;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|9/11|c.840-41T>A||||||	GT:AD:DP:GQ:PL	0/1:10,7:17:99:245,0,256	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	152657	.	G	T	140.03	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=2;QD=17.50;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_146963_147227|GENE_EXON_scaffold149229_cov62_146963_147227|transcript|Soaet10008922|protein_coding|10/11|c.913-37G>T||||||	GT:AD:DP:GQ:PL	1/1:2,6:9:12:168,12,0	scaffold149229_cov62	GLEAN	mRNA	146963	153195	0.78	+	.	ID=Soaet10008922
scaffold149229_cov62	162137	.	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.244;SOR=0.586;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_157770_158132|GENE_EXON_scaffold149229_cov62_157770_158132|transcript|Soaet10008923|protein_coding||c.-4005T>C|||||4005|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-4817A>G|||||4817|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|2/5|c.125+189A>G||||||	GT:AD:DP:GQ:PL	0/1:10,7:17:99:174,0,338	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	163035	.	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-0.093;SOR=1.003;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_157770_158132|GENE_EXON_scaffold149229_cov62_157770_158132|transcript|Soaet10008923|protein_coding||c.-4903T>C|||||4903|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-3919A>G|||||3919|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|2/5|c.126-326A>G||||||	GT:AD:DP:GQ:PL	0/1:13,10:23:99:313,0,362	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	163108	.	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.62;ReadPosRankSum=1.960;SOR=0.593;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_157770_158132|GENE_EXON_scaffold149229_cov62_157770_158132|transcript|Soaet10008923|protein_coding||c.-4976C>T|||||4976|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-3846G>A|||||3846|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|2/5|c.126-253G>A||||||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:207,0,459	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	163201	.	A	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-2.394;SOR=1.688;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-3753A>G|||||3753|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|2/5|c.126-160A>G||||||	GT:AD:DP:GQ:PL	0/1:14,7:21:99:203,0,384	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	163269	.	A	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;DP=9;Dels=0.00;ExcessHet=3.0103;FS=7.068;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=0;MQRankSum=-0.431;QD=11.86;ReadPosRankSum=1.510;SOR=1.044;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-3685A>T|||||3685|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|2/5|c.126-92A>T||||||	GT:AD:DP:GQ:PL	0/1:3,6:9:99:135,0,100	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	163623	.	T	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.655;SOR=0.762;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|4/6|c.248T>C|p.Val83Ala|248/456|248/456|83/151||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-3331T>C|||||3331|	GT:AD:DP:GQ:PL	0/1:15,14:29:99:361,0,403	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	164157	.	A	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.90;ReadPosRankSum=1.510;SOR=0.551;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-2797A>G|||||2797|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|4/5|c.270-192A>G||||||	GT:AD:DP:GQ:PL	0/1:11,12:23:99:371,0,287	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	164579	.	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.066;SOR=0.859;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding|6/6|c.402T>C|p.Val134Val|402/456|402/456|134/151||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.-2375T>C|||||2375|	GT:AD:DP:GQ:PL	0/1:4,11:15:65:242,0,65	scaffold149229_cov62	GLEAN	mRNA	161722	164633	0.79	+	.	ID=Soaet10008924
scaffold149229_cov62	166995	.	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.352;SOR=1.112;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|1/7|c.42C>T|p.Leu14Leu|42/627|42/627|14/208||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*2362C>T|||||2362|	GT:AD:DP:GQ:PL	0/1:11,6:17:99:165,0,327	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167045	.	T	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8820;MLEAC=1;MLEAF=0.500;MQ=57.21;MQ0=1;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.319;SOR=1.061;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*2412T>G|||||2412|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|1/6|c.58+34T>G||||||	GT:AD:DP:GQ:PL	0/1:8,3:11:82:82,0,221	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167046	.	G	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8820;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=1;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.120;SOR=1.179;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*2413G>T|||||2413|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|1/6|c.58+35G>T||||||	GT:AD:DP:GQ:PL	0/1:7,3:10:99:103,0,135	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167052	.	T	C	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=4.8819;MLEAC=1;MLEAF=0.500;MQ=56.17;MQ0=1;MQRankSum=-1.282;QD=2.62;ReadPosRankSum=-0.728;SOR=2.245;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*2419T>C|||||2419|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|1/6|c.58+41T>C||||||	GT:AD:DP:GQ:PL	0/1:9,2:11:57:57,0,265	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167153	.	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.25;ReadPosRankSum=1.068;SOR=1.022;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|2/7|c.84T>C|p.Cys28Cys|84/627|84/627|28/208||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*2520T>C|||||2520|	GT:AD:DP:GQ:PL	0/1:3,4:7:72:72,0,112	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167608	.	G	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.480;SOR=0.959;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*2975G>C|||||2975|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+221G>C||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:69:69,0,147	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167648	.	A	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.09;ReadPosRankSum=0.120;SOR=0.446;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3015A>T|||||3015|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+261A>T||||||	GT:AD:DP:GQ:PL	0/1:5,4:9:74:74,0,117	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167653	.	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-0.120;SOR=0.446;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3020A>G|||||3020|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+266A>G||||||	GT:AD:DP:GQ:PL	0/1:5,4:9:74:74,0,117	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167695	.	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.652;SOR=1.179;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3062C>T|||||3062|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+308C>T||||||	GT:AD:DP:GQ:PL	0/1:4,3:7:72:72,0,114	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167701	.	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.652;SOR=1.179;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3068A>G|||||3068|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+314A>G||||||	GT:AD:DP:GQ:PL	0/1:4,3:7:72:72,0,112	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167756	.	T	A	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.967;SOR=0.223;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3123T>A|||||3123|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+369T>A||||||	GT:AD:DP:GQ:PL	0/1:1,2:3:36:39,0,36	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167892	.	A	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.565;SOR=0.495;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3259A>C|||||3259|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+505A>C||||||	GT:AD:DP:GQ:PL	0/1:7,8:15:99:155,0,152	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167893	.	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.506;SOR=0.495;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3260G>A|||||3260|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+506G>A||||||	GT:AD:DP:GQ:PL	0/1:7,8:15:99:155,0,152	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167905	.	T	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.905;SOR=0.495;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3272T>C|||||3272|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+518T>C||||||	GT:AD:DP:GQ:PL	0/1:7,8:15:99:155,0,152	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167941	.	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.399;SOR=0.588;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3308G>A|||||3308|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+554G>A||||||	GT:AD:DP:GQ:PL	0/1:6,9:15:99:191,0,181	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167949	.	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.286;SOR=0.588;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3316G>A|||||3316|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+562G>A||||||	GT:AD:DP:GQ:PL	0/1:6,9:15:99:191,0,184	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167967	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-0.632;SOR=0.330;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3334C>T|||||3334|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+580C>T||||||	GT:AD:DP:GQ:PL	0/1:4,7:11:99:152,0,143	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	167968	.	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.632;SOR=0.330;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3335T>C|||||3335|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+581T>C||||||	GT:AD:DP:GQ:PL	0/1:4,7:11:99:150,0,145	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168009	.	G	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.389;SOR=1.329;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3376G>C|||||3376|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+622G>C||||||	GT:AD:DP:GQ:PL	0/1:6,6:12:99:145,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168010	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.389;SOR=1.329;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3377G>A|||||3377|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+623G>A||||||	GT:AD:DP:GQ:PL	0/1:6,6:12:99:148,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168013	.	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.538;SOR=1.329;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3380T>C|||||3380|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+626T>C||||||	GT:AD:DP:GQ:PL	0/1:6,6:12:99:150,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168018	.	A	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.212;SOR=0.941;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3385A>T|||||3385|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+631A>T||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:152,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168029	.	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.633;SOR=0.941;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3396A>G|||||3396|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+642A>G||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:152,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168030	.	A	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.37;ReadPosRankSum=0.556;SOR=0.941;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3397A>G|||||3397|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+643A>G||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:150,0,134	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168033	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.771;SOR=0.941;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3400C>T|||||3400|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+646C>T||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:152,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168039	.	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.767;SOR=0.941;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3406G>A|||||3406|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+652G>A||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:152,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168041	.	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.904;SOR=0.941;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3408G>A|||||3408|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+654G>A||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:152,0,150	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168052	.	A	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.735;SOR=0.892;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3419A>G|||||3419|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+665A>G||||||	GT:AD:DP:GQ:PL	0/1:7,8:15:99:184,0,177	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168074	.	ACT	A	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.14;RPA=3,2;RU=CT;ReadPosRankSum=0.549;SOR=0.631;STR;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3442_*3443delCT|||||3442|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+688_211+689delCT||||||	GT:AD:DP:GQ:PL	0/1:5,7:12:99:303,0,206	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168094	.	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.23;ReadPosRankSum=1.534;SOR=0.631;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3461A>G|||||3461|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+707A>G||||||	GT:AD:DP:GQ:PL	0/1:5,7:12:99:187,0,128	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168110	.	A	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.91;ReadPosRankSum=1.797;SOR=0.527;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3477A>C|||||3477|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+723A>C||||||	GT:AD:DP:GQ:PL	0/1:7,6:13:99:144,0,215	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168129	.	AT	A	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;RPA=6,5;RU=T;ReadPosRankSum=0.275;SOR=0.527;STR;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3497delT|||||3497|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.211+743delT||||||	GT:AD:DP:GQ:PL	0/1:7,6:14:99:182,0,210	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168158	.	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-1.693;SOR=0.368;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3525G>A|||||3525|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-747G>A||||||	GT:AD:DP:GQ:PL	0/1:6,4:10:99:137,0,182	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168170	.	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.3302;MLEAC=1;MLEAF=0.500;MQ=42.50;MQ0=6;MQRankSum=0.875;QD=4.32;ReadPosRankSum=-0.080;SOR=1.828;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3537C>T|||||3537|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-735C>T||||||	GT:AD:DP:GQ:PL	0/1:15,3:18:99:106,0,148	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168262	.	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.12;ReadPosRankSum=1.278;SOR=0.527;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3629G>A|||||3629|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-643G>A||||||	GT:AD:DP:GQ:PL	0/1:9,6:15:99:210,0,180	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168276	.	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.648;SOR=0.758;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3643C>T|||||3643|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-629C>T||||||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:251,0,193	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168290	.	C	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.659;SOR=0.892;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3657C>T|||||3657|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-615C>T||||||	GT:AD:DP:GQ:PL	0/1:8,9:17:99:258,0,169	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168293	.	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.658;SOR=0.892;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3660G>A|||||3660|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-612G>A||||||	GT:AD:DP:GQ:PL	0/1:8,9:17:99:254,0,225	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168307	.	A	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.93;ReadPosRankSum=0.327;SOR=0.892;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3674A>G|||||3674|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-598A>G||||||	GT:AD:DP:GQ:PL	0/1:8,9:18:99:265,0,172	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168367	.	T	C	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.412;SOR=1.239;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3734T>C|||||3734|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-538T>C||||||	GT:AD:DP:GQ:PL	0/1:17,19:36:99:507,0,397	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168379	.	C	T	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.987;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.381;SOR=1.239;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3746C>T|||||3746|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-526C>T||||||	GT:AD:DP:GQ:PL	0/1:17,19:36:99:470,0,401	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168424	.	A	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.449;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.54;ReadPosRankSum=-0.457;SOR=0.811;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3791A>G|||||3791|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-481A>G||||||	GT:AD:DP:GQ:PL	0/1:14,17:31:99:417,0,319	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168487	.	G	A	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.568;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.63;ReadPosRankSum=1.472;SOR=0.416;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3854G>A|||||3854|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-418G>A||||||	GT:AD:DP:GQ:PL	0/1:9,21:30:99:617,0,251	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168527	.	G	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.020;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.58;ReadPosRankSum=0.031;SOR=0.925;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3894G>A|||||3894|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-378G>A||||||	GT:AD:DP:GQ:PL	0/1:5,22:27:99:584,0,149	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168532	.	A	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.020;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.77;ReadPosRankSum=-0.094;SOR=0.925;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3899A>G|||||3899|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-373A>G||||||	GT:AD:DP:GQ:PL	0/1:5,22:27:99:589,0,147	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168561	.	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;DP=25;Dels=0.00;ExcessHet=3.0103;FS=5.409;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.99;ReadPosRankSum=-0.779;SOR=0.982;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3928G>A|||||3928|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-344G>A||||||	GT:AD:DP:GQ:PL	0/1:4,21:25:99:553,0,115	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168585	.	G	C	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;DP=20;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.84;ReadPosRankSum=-0.583;SOR=0.669;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3952G>C|||||3952|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-320G>C||||||	GT:AD:DP:GQ:PL	0/1:3,17:20:85:425,0,85	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168610	.	TATCTTC	T	739.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DP=15;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.66;ReadPosRankSum=1.837;SOR=1.802;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3978_*3983delATCTTC|||||3978|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-294_212-289delATCTTC||||||	GT:AD:DP:GQ:PL	0/1:5,10:15:99:777,0,402	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168621	.	A	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.832;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.86;ReadPosRankSum=1.357;SOR=2.303;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*3988A>T|||||3988|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-284A>T||||||	GT:AD:DP:GQ:PL	0/1:6,10:16:99:298,0,138	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168709	.	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.940;SOR=1.034;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4076A>G|||||4076|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-196A>G||||||	GT:AD:DP:GQ:PL	0/1:12,3:15:94:94,0,315	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168778	.	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.16;ReadPosRankSum=2.058;SOR=1.508;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4145C>T|||||4145|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-127C>T||||||	GT:AD:DP:GQ:PL	0/1:12,5:17:99:133,0,309	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168789	.	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.51;ReadPosRankSum=1.712;SOR=1.609;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4156T>C|||||4156|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-116T>C||||||	GT:AD:DP:GQ:PL	0/1:13,6:19:99:152,0,380	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168793	.	T	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.74;ReadPosRankSum=1.817;SOR=1.445;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4160T>C|||||4160|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-112T>C||||||	GT:AD:DP:GQ:PL	0/1:14,6:20:99:163,0,407	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168818	.	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.59;ReadPosRankSum=0.934;SOR=1.688;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4185G>A|||||4185|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-87G>A||||||	GT:AD:DP:GQ:PL	0/1:17,8:25:99:193,0,498	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168827	.	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.603;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.198;SOR=1.085;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4194G>A|||||4194|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-78G>A||||||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:187,0,489	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168845	.	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-1.158;QD=8.64;ReadPosRankSum=-1.481;SOR=0.260;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4212A>G|||||4212|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-60A>G||||||	GT:AD:DP:GQ:PL	0/1:14,9:23:99:227,0,416	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168849	.	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=58.98;MQ0=0;MQRankSum=-1.143;QD=9.31;ReadPosRankSum=-1.638;SOR=0.293;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4216A>G|||||4216|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-56A>G||||||	GT:AD:DP:GQ:PL	0/1:15,10:25:99:261,0,441	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168861	.	T	TA	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DP=27;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-1.131;QD=11.32;ReadPosRankSum=-2.099;SOR=0.183;ANN=TA|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4228_*4229insA|||||4229|,TA|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-44_212-43insA||||||	GT:AD:DP:GQ:PL	0/1:16,11:27:99:343,0,575	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	168862	.	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=1.9158;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-1.043;QD=11.84;ReadPosRankSum=-2.246;SOR=0.269;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4229C>T|||||4229|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|3/6|c.212-43C>T||||||	GT:AD:DP:GQ:PL	0/1:15,12:27:99:348,0,444	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	169323	.	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.03;ReadPosRankSum=-1.331;SOR=0.591;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.-4602T>C|||||4602|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_161722_161799|GENE_EXON_scaffold149229_cov62_161722_161799|transcript|Soaet10008924|protein_coding||c.*4690T>C|||||4690|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|4/6|c.316-49T>C||||||	GT:AD:DP:GQ:PL	0/1:9,16:25:99:504,0,270	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	169907	.	G	A	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-1.076;SOR=0.105;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.-4018G>A|||||4018|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|6/6|c.513+243G>A||||||	GT:AD:DP:GQ:PL	0/1:10,2:12:54:54,0,313	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	169956	.	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.992;SOR=0.223;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.-3969T>G|||||3969|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|6/6|c.513+292T>G||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:66:66,0,187	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	170465	.	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DP=9;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.241;SOR=1.911;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.-3460T>C|||||3460|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding|6/6|c.514-181T>C||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:99:103,0,147	scaffold149229_cov62	GLEAN	mRNA	166954	170759	0.74	+	.	ID=Soaet10008925
scaffold149229_cov62	174664	.	C	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.453;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.361;SOR=1.541;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.*3905C>T|||||3905|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding||c.*1905G>A|||||1905|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding|2/4|c.94-142C>T||||||	GT:AD:DP:GQ:PL	0/1:18,13:31:99:418,0,504	scaffold149229_cov62	GLEAN	mRNA	173925	175753	0.95	+	.	ID=Soaet10008926
scaffold149229_cov62	175122	.	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.276;SOR=0.446;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.*4363G>A|||||4363|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding||c.*1447C>T|||||1447|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding|3/4|c.147-205G>A||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:174,0,147	scaffold149229_cov62	GLEAN	mRNA	173925	175753	0.95	+	.	ID=Soaet10008926
scaffold149229_cov62	175608	.	T	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.686;SOR=1.244;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.*4849T>C|||||4849|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding||c.*961A>G|||||961|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding|4/4|c.234-16T>C||||||	GT:AD:DP:GQ:PL	0/1:23,10:33:99:259,0,595	scaffold149229_cov62	GLEAN	mRNA	173925	175753	0.95	+	.	ID=Soaet10008926
scaffold149229_cov62	175609	.	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.566;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.895;SOR=1.352;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_166954_167011|GENE_EXON_scaffold149229_cov62_166954_167011|transcript|Soaet10008925|protein_coding||c.*4850C>T|||||4850|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding||c.*960G>A|||||960|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding|4/4|c.234-15C>T||||||	GT:AD:DP:GQ:PL	0/1:22,10:32:99:317,0,567	scaffold149229_cov62	GLEAN	mRNA	173925	175753	0.95	+	.	ID=Soaet10008926
scaffold149229_cov62	177740	.	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.794;SOR=0.921;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding||c.-3548G>A|||||3548|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.*1987G>A|||||1987|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding|3/4|c.458-181C>T||||||	GT:AD:DP:GQ:PL	0/1:11,5:16:99:105,0,234	scaffold149229_cov62	GLEAN	mRNA	176569	179803	1.00	-	.	ID=Soaet10008927
scaffold149229_cov62	177752	.	T	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.977;SOR=0.941;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding||c.-3536T>A|||||3536|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.*1999T>A|||||1999|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding|3/4|c.458-193A>T||||||	GT:AD:DP:GQ:PL	0/1:10,7:17:99:123,0,266	scaffold149229_cov62	GLEAN	mRNA	176569	179803	1.00	-	.	ID=Soaet10008927
scaffold149229_cov62	178317	.	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=16;Dels=0.00;ExcessHet=3.0103;FS=13.570;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=1;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.552;SOR=3.598;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding||c.-2971T>C|||||2971|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.*2564T>C|||||2564|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding|3/4|c.457+516A>G||||||	GT:AD:DP:GQ:PL	0/1:11,5:16:99:156,0,324	scaffold149229_cov62	GLEAN	mRNA	176569	179803	1.00	-	.	ID=Soaet10008927
scaffold149229_cov62	179668	.	TGGAGGC	T	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=20;ExcessHet=3.0103;FS=4.598;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.629;QD=20.08;RPA=2,1;RU=GGAGGC;ReadPosRankSum=1.135;SOR=1.255;STR;ANN=T|conservative_inframe_deletion|MODERATE|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding|1/5|c.130_135delGCCTCC|p.Ala44_Ser45del|135/690|130/690|44/229||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding||c.-1619_-1614delGGAGGC|||||1619|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.*3916_*3921delGGAGGC|||||3916|	GT:AD:DP:GQ:PL	0/1:8,9:20:99:720,0,621	scaffold149229_cov62	GLEAN	mRNA	176569	179803	1.00	-	.	ID=Soaet10008927
scaffold149229_cov62	179690	.	A	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.959;QD=17.62;ReadPosRankSum=0.867;SOR=0.760;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding|1/5|c.114T>C|p.Asp38Asp|114/690|114/690|38/229||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding||c.-1598A>G|||||1598|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_173925_173961|GENE_EXON_scaffold149229_cov62_173925_173961|transcript|Soaet10008926|protein_coding||c.*3937A>G|||||3937|	GT:AD:DP:GQ:PL	0/1:8,11:19:99:363,0,222	scaffold149229_cov62	GLEAN	mRNA	176569	179803	1.00	-	.	ID=Soaet10008927
scaffold149229_cov62	181952	.	TCTAA	T	824.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.56;ReadPosRankSum=-1.273;SOR=0.836;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding||c.-2153_-2150delTTAG|||||2150|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding|1/1|c.609+57_609+60delCTAA||||||	GT:AD:DP:GQ:PL	0/1:6,13:20:99:862,0,367	scaffold149229_cov62	GLEAN	mRNA	181288	183798	1.00	+	.	ID=Soaet10008928
scaffold149229_cov62	182378	.	A	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.634;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.422;SOR=0.148;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding||c.-2575T>G|||||2575|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding|1/1|c.609+482A>C||||||	GT:AD:DP:GQ:PL	0/1:12,6:18:99:121,0,383	scaffold149229_cov62	GLEAN	mRNA	181288	183798	1.00	+	.	ID=Soaet10008928
scaffold149229_cov62	182532	.	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.344;SOR=0.941;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_176569_176712|GENE_EXON_scaffold149229_cov62_176569_176712|transcript|Soaet10008927|protein_coding||c.-2729A>G|||||2729|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_181288_181896|GENE_EXON_scaffold149229_cov62_181288_181896|transcript|Soaet10008928|protein_coding|1/1|c.609+636T>C||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:152,0,144	scaffold149229_cov62	GLEAN	mRNA	181288	183798	1.00	+	.	ID=Soaet10008928
scaffold149229_cov62	192743	.	CTT	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DP=20;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.87;RPA=13,11;RU=T;ReadPosRankSum=1.424;SOR=1.179;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|1/6|c.118+13_118+14delTT||||||	GT:AD:DP:GQ:PL	0/1:10,8:20:99:251,0,289	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	194856	.	T	C	329.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.62;ReadPosRankSum=0.080;SOR=0.976;ANN=C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|2/6|c.297-83T>C||||||	GT:AD:DP:GQ:PL	0/1:2,14:16:15:358,0,15	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	195718	.	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.834;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-1.097;SOR=1.336;ANN=A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|5/6|c.770+167G>A||||||	GT:AD:DP:GQ:PL	0/1:12,12:24:99:352,0,326	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	195901	.	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.772;SOR=0.368;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|5/6|c.770+350C>T||||||	GT:AD:DP:GQ:PL	0/1:8,12:20:99:307,0,174	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	196851	.	C	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.293;SOR=0.941;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|5/6|c.771-72C>T||||||	GT:AD:DP:GQ:PL	0/1:10,7:17:99:181,0,228	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	196998	.	A	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=39;Dels=0.00;ExcessHet=3.0103;FS=9.177;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-1.987;QD=8.53;ReadPosRankSum=-1.252;SOR=2.928;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.846A>G|p.Leu282Leu|846/1557|846/1557|282/518||	GT:AD:DP:GQ:PL	0/1:26,13:39:99:361,0,747	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197005	.	A	G	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=39;Dels=0.00;ExcessHet=3.0103;FS=11.989;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-1.987;QD=9.84;ReadPosRankSum=-0.447;SOR=2.928;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.853A>G|p.Ile285Val|853/1557|853/1557|285/518||	GT:AD:DP:GQ:PL	0/1:26,13:39:99:412,0,654	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197007	.	TGAA	T	608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DP=38;ExcessHet=3.0103;FS=9.273;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-1.948;QD=16.02;RPA=2,1;RU=GAA;ReadPosRankSum=-0.493;SOR=2.749;STR;ANN=T|disruptive_inframe_deletion|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.860_862delAAG|p.Glu287del|860/1557|860/1557|287/518||INFO_REALIGN_3_PRIME	GT:AD:DP:GQ:PL	0/1:25,13:38:99:646,0,1346	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197023	.	A	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;DP=44;Dels=0.00;ExcessHet=3.0103;FS=10.499;HaplotypeScore=2.9157;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-1.859;QD=10.40;ReadPosRankSum=1.380;SOR=2.494;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.871A>G|p.Ile291Val|871/1557|871/1557|291/518||	GT:AD:DP:GQ:PL	0/1:28,16:44:99:486,0,696	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197115	.	T	A	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DP=49;Dels=0.00;ExcessHet=3.0103;FS=6.230;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.14;ReadPosRankSum=0.493;SOR=1.206;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.963T>A|p.Thr321Thr|963/1557|963/1557|321/518||	GT:AD:DP:GQ:PL	0/1:19,30:49:99:868,0,520	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197148	.	TC	T	904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.07;RPA=6,5;RU=C;ReadPosRankSum=1.670;SOR=0.739;STR;ANN=T|frameshift_variant|HIGH|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1002delC|p.Ala335fs|1002/1557|1002/1557|334/518||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|1|1.00)	GT:AD:DP:GQ:PL	0/1:23,30:55:99:942,0,661	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197168	.	C	T	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.25;ReadPosRankSum=0.993;SOR=0.665;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1016C>T|p.Ala339Val|1016/1557|1016/1557|339/518||	GT:AD:DP:GQ:PL	0/1:24,30:55:99:852,0,658	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197169	.	A	G	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.08;ReadPosRankSum=1.378;SOR=0.892;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1017A>G|p.Ala339Ala|1017/1557|1017/1557|339/518||	GT:AD:DP:GQ:PL	0/1:26,31:57:99:831,0,742	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197179	.	G	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.59;ReadPosRankSum=0.016;SOR=0.903;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1027G>A|p.Gly343Arg|1027/1557|1027/1557|343/518||	GT:AD:DP:GQ:PL	0/1:25,32:57:99:860,0,706	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197194	.	A	AT	1195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;DP=55;ExcessHet=3.0103;FS=5.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.74;ReadPosRankSum=-1.452;SOR=1.132;ANN=AT|frameshift_variant|HIGH|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1042_1043insT|p.Thr348fs|1043/1557|1043/1557|348/518||;LOF=(EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|1|1.00)	GT:AD:DP:GQ:PL	0/1:24,31:55:99:1233,0,899	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197205	.	C	T	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.268;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.810;SOR=0.800;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1053C>T|p.Phe351Phe|1053/1557|1053/1557|351/518||	GT:AD:DP:GQ:PL	0/1:26,29:55:99:921,0,603	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197215	.	G	C	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.564;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.749;HaplotypeScore=29.4902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.023;SOR=1.108;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1063G>C|p.Ala355Pro|1063/1557|1063/1557|355/518||	GT:AD:DP:GQ:PL	0/1:30,28:58:99:895,0,731	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197218	.	A	ATC	1069.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;DP=54;ExcessHet=3.0103;FS=2.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.57;RPA=1,2;RU=TC;ReadPosRankSum=-0.431;SOR=0.799;STR;ANN=ATC|frameshift_variant|HIGH|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1067_1068dupTC|p.Val357fs|1069/1557|1069/1557|357/518||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|1|1.00)	GT:AD:DP:GQ:PL	0/1:27,25:54:99:1107,0,1212	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197251	.	C	T	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.608;HaplotypeScore=10.2260;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-1.037;QD=15.20;ReadPosRankSum=-0.211;SOR=0.994;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1099C>T|p.Arg367Cys|1099/1557|1099/1557|367/518||	GT:AD:DP:GQ:PL	0/1:31,27:58:99:910,0,788	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197331	.	T	C	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2839;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=1;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.083;SOR=0.551;ANN=C|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1179T>C|p.Thr393Thr|1179/1557|1179/1557|393/518||	GT:AD:DP:GQ:PL	0/1:25,20:46:99:609,0,637	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197332	.	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2839;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=1;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.470;SOR=0.714;ANN=A|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|6/7|c.1180G>A|p.Glu394Lys|1180/1557|1180/1557|394/518||	GT:AD:DP:GQ:PL	0/1:24,21:45:99:635,0,635	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197474	.	A	ATT	763.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.97;RPA=6,8;RU=T;ReadPosRankSum=-0.791;SOR=0.622;STR;ANN=ATT|frameshift_variant|HIGH|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1249_1250dupTT|p.Leu418fs|1251/1557|1251/1557|417/518||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|1|1.00)	GT:AD:DP:GQ:PL	0/1:23,22:47:99:801,0,891	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197483	.	T	C	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.9081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.526;SOR=0.542;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1253T>C|p.Leu418Ser|1253/1557|1253/1557|418/518||	GT:AD:DP:GQ:PL	0/1:23,23:46:99:597,0,615	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197580	.	T	G	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.284;SOR=0.789;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1350T>G|p.Ile450Met|1350/1557|1350/1557|450/518||	GT:AD:DP:GQ:PL	0/1:21,24:45:99:627,0,477	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197601	.	C	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.460;HaplotypeScore=2.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.170;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1371C>A|p.Thr457Thr|1371/1557|1371/1557|457/518||	GT:AD:DP:GQ:PL	0/1:26,23:49:99:579,0,702	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197630	.	A	T	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-0.591;SOR=0.803;ANN=T|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1400A>T|p.Asn467Ile|1400/1557|1400/1557|467/518||	GT:AD:DP:GQ:PL	0/1:18,25:43:99:677,0,455	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197667	.	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-1.175;SOR=0.712;ANN=A|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1437G>A|p.Ala479Ala|1437/1557|1437/1557|479/518||	GT:AD:DP:GQ:PL	0/1:21,17:38:99:451,0,588	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197700	.	A	G	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.000;SOR=0.750;ANN=G|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1470A>G|p.Leu490Leu|1470/1557|1470/1557|490/518||	GT:AD:DP:GQ:PL	0/1:23,15:38:99:352,0,632	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197718	.	C	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.303;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.687;SOR=0.633;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1488C>T|p.Tyr496Tyr|1488/1557|1488/1557|496/518||	GT:AD:DP:GQ:PL	0/1:23,15:38:99:335,0,637	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	197741	.	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=1.852;QD=11.02;ReadPosRankSum=0.230;SOR=0.368;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_192614_192731|GENE_EXON_scaffold149229_cov62_192614_192731|transcript|Soaet10008929|protein_coding|7/7|c.1511T>C|p.Val504Ala|1511/1557|1511/1557|504/518||	GT:AD:DP:GQ:PL	0/1:21,16:37:99:436,0,505	scaffold149229_cov62	GLEAN	mRNA	192614	197787	0.13	+	.	ID=Soaet10008929
scaffold149229_cov62	207384	.	C	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.25;ReadPosRankSum=1.550;SOR=0.495;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_207359_207907|GENE_EXON_scaffold149229_cov62_207359_207907|transcript|Soaet10008930|protein_coding|1/1|c.26C>G|p.Ser9Cys|26/549|26/549|9/182||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_209031_209942|GENE_EXON_scaffold149229_cov62_209031_209942|transcript|Soaet10008931|protein_coding||c.*1647G>C|||||1647|	GT:AD:DP:GQ:PL	0/1:6,5:11:99:174,0,181	scaffold149229_cov62	GLEAN	mRNA	207359	207907	0.97	+	.	ID=Soaet10008930
scaffold149229_cov62	207875	.	G	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.183;SOR=0.850;ANN=C|missense_variant|MODERATE|EXON_scaffold149229_cov62_207359_207907|GENE_EXON_scaffold149229_cov62_207359_207907|transcript|Soaet10008930|protein_coding|1/1|c.517G>C|p.Glu173Gln|517/549|517/549|173/182||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_209031_209942|GENE_EXON_scaffold149229_cov62_209031_209942|transcript|Soaet10008931|protein_coding||c.*1156C>G|||||1156|	GT:AD:DP:GQ:PL	0/1:19,12:31:99:374,0,537	scaffold149229_cov62	GLEAN	mRNA	207359	207907	0.97	+	.	ID=Soaet10008930
scaffold149229_cov62	207901	.	C	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.64;ReadPosRankSum=-0.223;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold149229_cov62_207359_207907|GENE_EXON_scaffold149229_cov62_207359_207907|transcript|Soaet10008930|protein_coding|1/1|c.543C>T|p.Tyr181Tyr|543/549|543/549|181/182||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_209031_209942|GENE_EXON_scaffold149229_cov62_209031_209942|transcript|Soaet10008931|protein_coding||c.*1130G>A|||||1130|	GT:AD:DP:GQ:PL	0/1:12,19:31:99:482,0,375	scaffold149229_cov62	GLEAN	mRNA	207359	207907	0.97	+	.	ID=Soaet10008930
scaffold149229_cov62	230774	.	C	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.69;ReadPosRankSum=1.107;SOR=0.446;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding||c.-3283C>T|||||3283|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding|1/2|c.274+202C>T||||||	GT:AD:DP:GQ:PL	0/1:5,12:17:99:278,0,99	scaffold149229_cov62	GLEAN	mRNA	230299	232070	0.46	+	.	ID=Soaet10008933
scaffold149229_cov62	230939	.	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.319;SOR=0.307;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding||c.-3118G>A|||||3118|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding|1/2|c.274+367G>A||||||	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,156	scaffold149229_cov62	GLEAN	mRNA	230299	232070	0.46	+	.	ID=Soaet10008933
scaffold149229_cov62	232057	.	T	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.000;SOR=0.223;ANN=G|missense_variant|MODERATE|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding|3/3|c.401T>G|p.Leu134Trp|401/414|401/414|134/137||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding||c.-2000T>G|||||2000|	GT:AD:DP:GQ:PL	0/1:1,6:7:30:122,0,30	scaffold149229_cov62	GLEAN	mRNA	230299	232070	0.46	+	.	ID=Soaet10008933
scaffold149229_cov62	234429	.	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.106;SOR=1.118;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding||c.*2359T>C|||||2359|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|1/13|c.110+263T>C||||||	GT:AD:DP:GQ:PL	0/1:17,3:20:85:85,0,420	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	234603	.	T	G	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.819;SOR=1.034;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding||c.*2533T>G|||||2533|,G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|1/13|c.110+437T>G||||||	GT:AD:DP:GQ:PL	0/1:19,3:22:45:45,0,480	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	234742	.	T	C	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.292;SOR=2.030;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding||c.*2672T>C|||||2672|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|1/13|c.110+576T>C||||||	GT:AD:DP:GQ:PL	0/1:11,2:13:55:55,0,266	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	234812	.	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-1.437;SOR=0.446;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding||c.*2742T>C|||||2742|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|1/13|c.110+646T>C||||||	GT:AD:DP:GQ:PL	0/1:5,4:9:99:106,0,150	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	235199	.	G	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.703;SOR=0.799;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_230299_230572|GENE_EXON_scaffold149229_cov62_230299_230572|transcript|Soaet10008933|protein_coding||c.*3129G>C|||||3129|,C|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|1/13|c.110+1033G>C||||||	GT:AD:DP:GQ:PL	0/1:3,5:8:58:151,0,58	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	239014	.	AG	A	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=18;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.81;RPA=6,5;RU=G;ReadPosRankSum=1.259;SOR=0.330;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_243525_244131|GENE_EXON_scaffold149229_cov62_243525_244131|transcript|Soaet10008935|protein_coding||c.-4510delG|||||4510|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|6/13|c.553-183delG||||||	GT:AD:DP:GQ:PL	0/1:11,6:18:99:170,0,331	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	239737	.	C	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.798;SOR=0.307;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_243525_244131|GENE_EXON_scaffold149229_cov62_243525_244131|transcript|Soaet10008935|protein_coding||c.-3788C>T|||||3788|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|9/13|c.860+13C>T||||||	GT:AD:DP:GQ:PL	0/1:14,12:27:99:387,0,340	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	239798	.	G	A	886.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SOR=1.022;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_243525_244131|GENE_EXON_scaffold149229_cov62_243525_244131|transcript|Soaet10008935|protein_coding||c.-3727G>A|||||3727|,A|intron_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding|9/13|c.861-35G>A||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:66:915,66,0	scaffold149229_cov62	GLEAN	mRNA	234057	241280	0.69	+	.	ID=Soaet10008934
scaffold149229_cov62	244381	.	G	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=0.822;QD=7.60;ReadPosRankSum=0.452;SOR=1.300;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding||c.*3101G>T|||||3101|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_243525_244131|GENE_EXON_scaffold149229_cov62_243525_244131|transcript|Soaet10008935|protein_coding|1/1|c.607+250G>T||||||	GT:AD:DP:GQ:PL	0/1:15,8:24:99:203,0,413	scaffold149229_cov62	GLEAN	mRNA	243525	245261	0.89	+	.	ID=Soaet10008935
scaffold149229_cov62	244540	.	A	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-0.896;SOR=0.446;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149229_cov62_234057_234166|GENE_EXON_scaffold149229_cov62_234057_234166|transcript|Soaet10008934|protein_coding||c.*3260A>T|||||3260|,T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_243525_244131|GENE_EXON_scaffold149229_cov62_243525_244131|transcript|Soaet10008935|protein_coding|1/1|c.608-141A>T||||||	GT:AD:DP:GQ:PL	0/1:12,20:32:99:486,0,250	scaffold149229_cov62	GLEAN	mRNA	243525	245261	0.89	+	.	ID=Soaet10008935
scaffold149229_cov62	251837	.	A	T	532.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SOR=0.892;ANN=T|intron_variant|MODIFIER|EXON_scaffold149229_cov62_251549_251623|GENE_EXON_scaffold149229_cov62_251549_251623|transcript|Soaet10008937|protein_coding|7/7|c.648+50T>A||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:39:561,39,0	scaffold149229_cov62	GLEAN	mRNA	251549	255536	0.98	-	.	ID=Soaet10008937
scaffold149229_cov62	254040	.	C	G	755.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.070;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.49;ReadPosRankSum=-0.867;SOR=0.340;ANN=G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_251549_251623|GENE_EXON_scaffold149229_cov62_251549_251623|transcript|Soaet10008937|protein_coding|1/7|c.272-35G>C||||||	GT:AD:DP:GQ:PL	1/1:1,23:24:57:784,57,0	scaffold149229_cov62	GLEAN	mRNA	251549	255536	0.98	-	.	ID=Soaet10008937
scaffold149229_cov62	254855	.	T	TA	816.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;RPA=2,3;RU=A;SOR=0.784;STR;ANN=TA|intron_variant|MODIFIER|EXON_scaffold149229_cov62_251549_251623|GENE_EXON_scaffold149229_cov62_251549_251623|transcript|Soaet10008937|protein_coding|1/7|c.271+410_271+411insT||||||	GT:AD:DP:GQ:PL	1/1:0,21:24:63:854,63,0	scaffold149229_cov62	GLEAN	mRNA	251549	255536	0.98	-	.	ID=Soaet10008937
scaffold149229_cov62	255085	.	T	G	643.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.66;SOR=0.784;ANN=G|intron_variant|MODIFIER|EXON_scaffold149229_cov62_251549_251623|GENE_EXON_scaffold149229_cov62_251549_251623|transcript|Soaet10008937|protein_coding|1/7|c.271+181A>C||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:48:672,48,0	scaffold149229_cov62	GLEAN	mRNA	251549	255536	0.98	-	.	ID=Soaet10008937
scaffold149230_cov63	127078	.	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.90;SOR=1.005;ANN=G|synonymous_variant|LOW|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding|1/2|c.48A>G|p.Leu16Leu|48/321|48/321|16/106||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding||c.*399T>C|||||399|	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1452,105,0	scaffold149230_cov63	GLEAN	mRNA	127031	127471	0.59	+	.	ID=Soaet10008263
scaffold149230_cov63	127106	.	G	C	1196.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.74;SOR=1.085;ANN=C|missense_variant|MODERATE|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding|1/2|c.76G>C|p.Val26Leu|76/321|76/321|26/106||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding||c.*371C>G|||||371|	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1225,90,0	scaffold149230_cov63	GLEAN	mRNA	127031	127471	0.59	+	.	ID=Soaet10008263
scaffold149230_cov63	127135	.	G	C,T	1054.77	.	AC=1,1;AF=0.500,0.500;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.28;MQ0=0;QD=31.02;SOR=1.085;ANN=C|missense_variant|MODERATE|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding|1/2|c.105G>C|p.Lys35Asn|105/321|105/321|35/106||,T|missense_variant|MODERATE|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding|1/2|c.105G>T|p.Lys35Asn|105/321|105/321|35/106||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding||c.*342C>G|||||342|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding||c.*342C>A|||||342|	GT:AD:DP:GQ:PL	1/2:0,19,15:34:99:1083,468,420,616,0,576	scaffold149230_cov63	GLEAN	mRNA	127031	127471	0.59	+	.	ID=Soaet10008263
scaffold149230_cov63	127346	.	T	C	1436.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.08;SOR=0.741;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding||c.*131A>G|||||131|,C|intron_variant|MODIFIER|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding|1/1|c.214-18T>C||||||	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1465,105,0	scaffold149230_cov63	GLEAN	mRNA	127031	127471	0.59	+	.	ID=Soaet10008263
scaffold149230_cov63	127466	.	G	T	1259.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.99;SOR=1.209;ANN=T|missense_variant|MODERATE|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding|2/2|c.316G>T|p.Ala106Ser|316/321|316/321|106/106||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding||c.*11C>A|||||11|	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1288,96,0	scaffold149230_cov63	GLEAN	mRNA	127031	127471	0.59	+	.	ID=Soaet10008263
scaffold149230_cov63	127490	.	G	A	851.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.55;ReadPosRankSum=-1.220;SOR=0.468;ANN=A|missense_variant|MODERATE|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding|1/1|c.170C>T|p.Thr57Met|170/183|170/183|57/60||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding||c.*19G>A|||||19|	GT:AD:DP:GQ:PL	1/1:1,26:27:63:880,63,0	scaffold149230_cov63	GLEAN	mRNA	127477	127659	0.97	-	.	ID=Soaet10008264
scaffold149230_cov63	127506	.	G	A	718.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.25;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding|1/1|c.154C>T|p.Pro52Ser|154/183|154/183|52/60||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding||c.*35G>A|||||35|	GT:AD:DP:GQ:PL	1/1:0,23:23:54:747,54,0	scaffold149230_cov63	GLEAN	mRNA	127477	127659	0.97	-	.	ID=Soaet10008264
scaffold149230_cov63	127626	.	T	C	917.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.27;SOR=1.136;ANN=C|missense_variant|MODERATE|EXON_scaffold149230_cov63_127477_127659|GENE_EXON_scaffold149230_cov63_127477_127659|transcript|Soaet10008264|protein_coding|1/1|c.34A>G|p.Ile12Val|34/183|34/183|12/60||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149230_cov63_127031_127243|GENE_EXON_scaffold149230_cov63_127031_127243|transcript|Soaet10008263|protein_coding||c.*155T>C|||||155|	GT:AD:DP:GQ:PL	1/1:0,25:25:69:946,69,0	scaffold149230_cov63	GLEAN	mRNA	127477	127659	0.97	-	.	ID=Soaet10008264
scaffold149291_cov61	114361	.	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.36;SOR=1.308;ANN=G|missense_variant|MODERATE|EXON_scaffold149291_cov61_114240_114479|GENE_EXON_scaffold149291_cov61_114240_114479|transcript|Soaet10008248|protein_coding|1/1|c.119T>C|p.Ile40Thr|119/240|119/240|40/79||	GT:AD:DP:GQ:PL	1/1:0,35:35:78:1091,78,0	scaffold149291_cov61	GLEAN	mRNA	114240	114479	0.97	-	.	ID=Soaet10008248
scaffold149291_cov61	114381	.	T	A	1019.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.56;SOR=1.121;ANN=A|missense_variant|MODERATE|EXON_scaffold149291_cov61_114240_114479|GENE_EXON_scaffold149291_cov61_114240_114479|transcript|Soaet10008248|protein_coding|1/1|c.99A>T|p.Glu33Asp|99/240|99/240|33/79||	GT:AD:DP:GQ:PL	1/1:0,37:37:75:1048,75,0	scaffold149291_cov61	GLEAN	mRNA	114240	114479	0.97	-	.	ID=Soaet10008248
scaffold149291_cov61	114462	.	T	C	965.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=32.19;SOR=1.329;ANN=C|synonymous_variant|LOW|EXON_scaffold149291_cov61_114240_114479|GENE_EXON_scaffold149291_cov61_114240_114479|transcript|Soaet10008248|protein_coding|1/1|c.18A>G|p.Glu6Glu|18/240|18/240|6/79||	GT:AD:DP:GQ:PL	1/1:0,30:30:72:994,72,0	scaffold149291_cov61	GLEAN	mRNA	114240	114479	0.97	-	.	ID=Soaet10008248
scaffold149291_cov61	131958	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.809;HaplotypeScore=11.2438;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=0;MQRankSum=-4.480;QD=1.70;ReadPosRankSum=0.146;SOR=2.286;ANN=A|synonymous_variant|LOW|EXON_scaffold149291_cov61_131818_132093|GENE_EXON_scaffold149291_cov61_131818_132093|transcript|Soaet10008249|protein_coding|1/1|c.141G>A|p.Arg47Arg|141/276|141/276|47/91||	GT:AD:DP:GQ:PL	0/1:21,6:27:74:74,0,736	scaffold149291_cov61	GLEAN	mRNA	131818	132093	0.97	+	.	ID=Soaet10008249
scaffold149291_cov61	131961	.	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DP=29;Dels=0.00;ExcessHet=3.0103;FS=7.627;HaplotypeScore=11.2438;MLEAC=1;MLEAF=0.500;MQ=56.07;MQ0=0;MQRankSum=-4.720;QD=3.44;ReadPosRankSum=0.051;SOR=2.562;ANN=A|synonymous_variant|LOW|EXON_scaffold149291_cov61_131818_132093|GENE_EXON_scaffold149291_cov61_131818_132093|transcript|Soaet10008249|protein_coding|1/1|c.144G>A|p.Lys48Lys|144/276|144/276|48/91||	GT:AD:DP:GQ:PL	0/1:22,7:29:99:128,0,770	scaffold149291_cov61	GLEAN	mRNA	131818	132093	0.97	+	.	ID=Soaet10008249
scaffold149291_cov61	131975	.	G	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DP=43;Dels=0.00;ExcessHet=3.0103;FS=5.125;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-4.007;QD=5.65;ReadPosRankSum=-0.491;SOR=1.718;ANN=T|missense_variant|MODERATE|EXON_scaffold149291_cov61_131818_132093|GENE_EXON_scaffold149291_cov61_131818_132093|transcript|Soaet10008249|protein_coding|1/1|c.158G>T|p.Gly53Val|158/276|158/276|53/91||	GT:AD:DP:GQ:PL	0/1:30,13:43:99:271,0,890	scaffold149291_cov61	GLEAN	mRNA	131818	132093	0.97	+	.	ID=Soaet10008249
scaffold149291_cov61	131997	.	T	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=49;Dels=0.00;ExcessHet=3.0103;FS=6.702;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=49.24;MQ0=1;MQRankSum=-3.504;QD=6.75;ReadPosRankSum=-0.192;SOR=1.863;ANN=A|synonymous_variant|LOW|EXON_scaffold149291_cov61_131818_132093|GENE_EXON_scaffold149291_cov61_131818_132093|transcript|Soaet10008249|protein_coding|1/1|c.180T>A|p.Ala60Ala|180/276|180/276|60/91||	GT:AD:DP:GQ:PL	0/1:31,18:49:99:359,0,728	scaffold149291_cov61	GLEAN	mRNA	131818	132093	0.97	+	.	ID=Soaet10008249
scaffold149291_cov61	132000	.	T	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.612;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=48.12;MQ0=1;MQRankSum=-2.907;QD=7.40;ReadPosRankSum=0.406;SOR=1.569;ANN=C|synonymous_variant|LOW|EXON_scaffold149291_cov61_131818_132093|GENE_EXON_scaffold149291_cov61_131818_132093|transcript|Soaet10008249|protein_coding|1/1|c.183T>C|p.His61His|183/276|183/276|61/91||	GT:AD:DP:GQ:PL	0/1:32,18:50:99:398,0,773	scaffold149291_cov61	GLEAN	mRNA	131818	132093	0.97	+	.	ID=Soaet10008249
scaffold149291_cov61	132073	.	T	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.506;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7388;MLEAC=1;MLEAF=0.500;MQ=48.72;MQ0=1;MQRankSum=-6.964;QD=8.18;ReadPosRankSum=1.886;SOR=0.748;ANN=A|missense_variant|MODERATE|EXON_scaffold149291_cov61_131818_132093|GENE_EXON_scaffold149291_cov61_131818_132093|transcript|Soaet10008249|protein_coding|1/1|c.256T>A|p.Cys86Ser|256/276|256/276|86/91||	GT:AD:DP:GQ:PL	0/1:26,38:64:99:552,0,801	scaffold149291_cov61	GLEAN	mRNA	131818	132093	0.97	+	.	ID=Soaet10008249
scaffold149291_cov61	132077	.	G	A	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7388;MLEAC=1;MLEAF=0.500;MQ=48.92;MQ0=1;MQRankSum=-7.060;QD=8.17;ReadPosRankSum=1.673;SOR=0.803;ANN=A|missense_variant|MODERATE|EXON_scaffold149291_cov61_131818_132093|GENE_EXON_scaffold149291_cov61_131818_132093|transcript|Soaet10008249|protein_coding|1/1|c.260G>A|p.Gly87Glu|260/276|260/276|87/91||	GT:AD:DP:GQ:PL	0/1:27,38:65:99:559,0,777	scaffold149291_cov61	GLEAN	mRNA	131818	132093	0.97	+	.	ID=Soaet10008249
scaffold149351_cov63	3339	.	T	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-1.744;SOR=1.179;ANN=C|synonymous_variant|LOW|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding|1/1|c.183T>C|p.Asp61Asp|183/1773|183/1773|61/590||	GT:AD:DP:GQ:PL	0/1:26,13:39:99:361,0,741	scaffold149351_cov63	GLEAN	mRNA	3157	4929	1.00	+	.	ID=Soaet10009288
scaffold149351_cov63	3896	.	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.389;SOR=0.616;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding|1/1|c.740C>T|p.Ser247Leu|740/1773|740/1773|247/590||	GT:AD:DP:GQ:PL	0/1:20,12:32:99:353,0,532	scaffold149351_cov63	GLEAN	mRNA	3157	4929	1.00	+	.	ID=Soaet10009288
scaffold149351_cov63	9286	.	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=33.56;SOR=0.826;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|2/2|c.497G>A|p.Arg166Lys|497/513|497/513|166/170||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4357C>T|||||4357|	GT:AD:DP:GQ:PL	1/1:0,30:30:75:1035,75,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9295	.	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=27.43;SOR=0.906;ANN=A|missense_variant|MODERATE|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|2/2|c.488C>T|p.Pro163Leu|488/513|488/513|163/170||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4366G>A|||||4366|	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1065,78,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9356	.	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.928;HaplotypeScore=3.7468;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=1.120;QD=15.96;ReadPosRankSum=1.330;SOR=0.340;ANN=A|stop_gained|HIGH|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|2/2|c.427C>T|p.Gln143*|427/513|427/513|143/170||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4427G>A|||||4427|	GT:AD:DP:GQ:PL	0/1:16,18:34:99:571,0,422	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9399	.	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6632;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=1.097;QD=14.41;ReadPosRankSum=-0.534;SOR=0.382;ANN=T|synonymous_variant|LOW|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|2/2|c.384G>A|p.Arg128Arg|384/513|384/513|128/170||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4470C>T|||||4470|	GT:AD:DP:GQ:PL	0/1:15,16:31:99:475,0,420	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9409	.	G	A	1076.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8147;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=34.73;SOR=1.214;ANN=A|missense_variant|MODERATE|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|2/2|c.374C>T|p.Thr125Ile|374/513|374/513|125/170||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4480G>A|||||4480|	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1105,81,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9481	.	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8313;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=0.881;QD=10.10;ReadPosRankSum=-0.418;SOR=0.714;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|2/2|c.302G>A|p.Cys101Tyr|302/513|302/513|101/170||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4552C>T|||||4552|	GT:AD:DP:GQ:PL	0/1:22,15:37:99:402,0,701	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9677	.	C	T	858.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.67;SOR=0.836;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|2/2|c.106G>A|p.Glu36Lys|106/513|106/513|36/170||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4748C>T|||||4748|	GT:AD:DP:GQ:PL	1/1:0,28:28:63:887,63,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9820	.	G	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-1.708;SOR=0.527;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_3157_4929|GENE_EXON_scaffold149351_cov63_3157_4929|transcript|Soaet10009288|protein_coding||c.*4891G>T|||||4891|,T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.100-137C>A||||||	GT:AD:DP:GQ:PL	0/1:12,17:29:99:483,0,350	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9954	.	A	G	977.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.349;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.774;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=1;MQRankSum=5.660;QD=30.56;ReadPosRankSum=0.336;SOR=0.870;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+230T>C||||||	GT:AD:DP:GQ:PL	1/1:2,30:33:38:1006,38,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9985	.	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=10.7458;MLEAC=1;MLEAF=0.500;MQ=56.91;MQ0=2;MQRankSum=1.388;QD=8.99;ReadPosRankSum=0.618;SOR=0.863;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+199G>A||||||	GT:AD:DP:GQ:PL	0/1:23,12:35:99:343,0,602	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	9991	.	G	C	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.7431;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=2;MQRankSum=-4.321;QD=0.46;ReadPosRankSum=-0.660;SOR=0.869;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+193C>G||||||	GT:AD:DP:GQ:PL	0/1:30,7:37:45:45,0,959	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10017	.	T	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=1;MQRankSum=-4.475;QD=2.14;ReadPosRankSum=-0.365;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+167A>C||||||	GT:AD:DP:GQ:PL	0/1:25,8:33:99:99,0,804	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10019	.	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=1;MQRankSum=-4.475;QD=2.14;ReadPosRankSum=-0.342;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+165G>A||||||	GT:AD:DP:GQ:PL	0/1:25,8:33:99:99,0,816	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10022	.	A	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=1;MQRankSum=-4.393;QD=2.31;ReadPosRankSum=-0.260;SOR=0.610;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+162T>A||||||	GT:AD:DP:GQ:PL	0/1:24,8:32:99:102,0,773	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10039	.	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=1;MQRankSum=-4.572;QD=3.45;ReadPosRankSum=0.435;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+145G>A||||||	GT:AD:DP:GQ:PL	0/1:24,9:33:99:142,0,688	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10040	.	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=1;MQRankSum=-4.572;QD=3.05;ReadPosRankSum=0.632;SOR=0.976;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+144A>G||||||	GT:AD:DP:GQ:PL	0/1:24,9:33:99:129,0,699	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10044	.	G	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=1;MQRankSum=-4.572;QD=3.45;ReadPosRankSum=0.915;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+140C>A||||||	GT:AD:DP:GQ:PL	0/1:24,9:33:99:142,0,702	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10057	.	A	G	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=1;MQRankSum=4.781;QD=19.43;ReadPosRankSum=-1.011;SOR=0.721;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+127T>C||||||	GT:AD:DP:GQ:PL	0/1:10,24:34:99:689,0,147	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10060	.	C	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=1;MQRankSum=-4.725;QD=3.58;ReadPosRankSum=1.031;SOR=0.777;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+124G>T||||||	GT:AD:DP:GQ:PL	0/1:24,10:34:99:150,0,695	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10061	.	A	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=1;MQRankSum=-4.809;QD=3.39;ReadPosRankSum=1.094;SOR=0.834;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+123T>C||||||	GT:AD:DP:GQ:PL	0/1:25,10:35:99:147,0,735	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10082	.	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=1;MQRankSum=-4.654;QD=3.35;ReadPosRankSum=1.787;SOR=0.495;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+102C>T||||||	GT:AD:DP:GQ:PL	0/1:25,9:34:99:142,0,729	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10111	.	T	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-4.570;QD=3.68;ReadPosRankSum=-0.152;SOR=0.976;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+73A>G||||||	GT:AD:DP:GQ:PL	0/1:24,8:32:99:146,0,667	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10124	.	T	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-4.570;QD=3.68;ReadPosRankSum=-1.045;SOR=0.793;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+60A>G||||||	GT:AD:DP:GQ:PL	0/1:24,8:32:99:146,0,626	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10135	.	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.87;MQ0=0;MQRankSum=-4.752;QD=2.39;ReadPosRankSum=-0.908;SOR=0.735;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+49G>A||||||	GT:AD:DP:GQ:PL	0/1:24,6:30:99:100,0,665	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10138	.	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.52;MQ0=0;MQRankSum=-5.021;QD=1.44;ReadPosRankSum=-0.781;SOR=0.368;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+46T>C||||||	GT:AD:DP:GQ:PL	0/1:22,5:27:67:67,0,657	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10143	.	C	T	897.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.371;QD=32.06;ReadPosRankSum=-1.239;SOR=1.351;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+41G>A||||||	GT:AD:DP:GQ:PL	1/1:1,27:28:66:926,66,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10173	.	C	T	816.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.632;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.4926;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=5.100;QD=31.41;ReadPosRankSum=-0.915;SOR=0.250;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/1|c.99+11G>A||||||	GT:AD:DP:GQ:PL	1/1:2,24:27:29:845,29,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	10276	.	G	A	821.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=26.51;SOR=1.214;ANN=A|synonymous_variant|LOW|EXON_scaffold149351_cov63_9270_9683|GENE_EXON_scaffold149351_cov63_9270_9683|transcript|Soaet10009289|protein_coding|1/2|c.7C>T|p.Leu3Leu|7/513|7/513|3/170||	GT:AD:DP:GQ:PL	1/1:0,31:31:63:850,63,0	scaffold149351_cov63	GLEAN	mRNA	9270	10282	0.63	-	.	ID=Soaet10009289
scaffold149351_cov63	40780	.	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.76;SOR=1.259;ANN=C|synonymous_variant|LOW|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|4/4|c.411A>G|p.Arg137Arg|411/546|411/546|137/181||	GT:AD:DP:GQ:PL	1/1:0,42:42:93:1320,93,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41041	.	C	T	714.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.08;SOR=1.708;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/3|c.243-93G>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:54:743,54,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41069	.	C	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.365;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.82;ReadPosRankSum=0.245;SOR=2.012;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/3|c.243-121G>C||||||	GT:AD:DP:GQ:PL	0/1:16,8:24:99:216,0,462	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41089	.	A	G	710.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.31;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/3|c.243-141T>C||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:739,54,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41144	.	G	A	921.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.92;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/3|c.243-196C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:950,69,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41299	.	T	G	586.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.60;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/3|c.242+263A>C||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:45:615,45,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41378	.	C	T	618.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/3|c.242+184G>A||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:48:647,48,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41451	.	C	T	891.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.03;SOR=1.528;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/3|c.242+111G>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:66:920,66,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41609	.	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=30.52;SOR=1.061;ANN=C|synonymous_variant|LOW|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|3/4|c.195A>G|p.Leu65Leu|195/546|195/546|65/181||	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1127,81,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41651	.	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.881;QD=11.02;ReadPosRankSum=-0.820;SOR=0.714;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-37G>A||||||	GT:AD:DP:GQ:PL	0/1:22,15:37:99:436,0,613	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41777	.	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=0.596;QD=3.75;ReadPosRankSum=-1.589;SOR=1.289;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-163C>T||||||	GT:AD:DP:GQ:PL	0/1:23,6:29:99:137,0,656	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41782	.	G	T	895.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=5.571;QD=29.86;ReadPosRankSum=-0.809;SOR=0.250;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-168C>A||||||	GT:AD:DP:GQ:PL	1/1:1,29:30:66:924,66,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41863	.	G	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.754;SOR=0.789;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-249C>G||||||	GT:AD:DP:GQ:PL	0/1:21,11:32:99:295,0,561	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	41992	.	A	G	1172.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.70;SOR=0.746;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-378T>C||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1201,87,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42038	.	G	A	986.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.83;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-424C>T||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1015,75,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42076	.	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=28.64;SOR=0.984;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-462A>G||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:78:1088,78,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42236	.	T	C	551.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.46;SOR=0.804;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-622A>G||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:42:580,42,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42399	.	A	G	604.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-785T>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:633,45,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42483	.	G	A	765.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.91;SOR=1.051;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-869C>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:57:794,57,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42511	.	C	T	810.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=31.18;SOR=0.846;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-897G>A||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:839,60,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42701	.	A	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=2.003;QD=19.47;ReadPosRankSum=0.075;SOR=0.610;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-1087T>A||||||	GT:AD:DP:GQ:PL	0/1:5,18:23:99:476,0,112	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42760	.	AAG	A	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.40;ReadPosRankSum=-0.453;SOR=1.038;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-1148_190-1147delCT||||||	GT:AD:DP:GQ:PL	0/1:6,11:17:99:503,0,280	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42763	.	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-0.045;SOR=1.445;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-1149G>A||||||	GT:AD:DP:GQ:PL	0/1:7,11:18:99:359,0,188	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	42984	.	C	T	558.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.87;SOR=1.061;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-1370G>A||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:45:587,45,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	43032	.	G	A	923.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.21;SOR=1.781;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-1418C>T||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:69:952,69,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	43150	.	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.51;SOR=0.823;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-1536C>T||||||	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1509,108,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	43326	.	A	G	1008.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=37.40;SOR=0.997;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-1712T>C||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1037,75,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44016	.	A	G	999.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.24;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2402T>C||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1028,72,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44213	.	A	G	604.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2599T>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:633,45,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44391	.	A	G	699.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.81;SOR=1.085;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2777T>C||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:728,51,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44484	.	G	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.664;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.78;MQ0=1;MQRankSum=0.870;QD=5.59;ReadPosRankSum=-0.536;SOR=0.824;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2870C>A||||||	GT:AD:DP:GQ:PL	0/1:23,7:30:99:196,0,531	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44516	.	G	A	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DP=32;Dels=0.00;ExcessHet=3.0103;FS=10.474;HaplotypeScore=2.9145;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=2;MQRankSum=-5.310;QD=0.68;ReadPosRankSum=-0.138;SOR=2.803;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2902C>T||||||	GT:AD:DP:GQ:PL	0/1:27,5:32:50:50,0,785	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44544	.	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=36;Dels=0.00;ExcessHet=3.0103;FS=12.792;HaplotypeScore=2.9571;MLEAC=1;MLEAF=0.500;MQ=55.44;MQ0=2;MQRankSum=-5.682;QD=1.99;ReadPosRankSum=0.341;SOR=3.608;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2930T>C||||||	GT:AD:DP:GQ:PL	0/1:29,7:36:99:100,0,822	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44552	.	A	G	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9782;MLEAC=1;MLEAF=0.500;MQ=52.77;MQ0=4;MQRankSum=-3.814;QD=0.48;ReadPosRankSum=-0.307;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2938T>C||||||	GT:AD:DP:GQ:PL	0/1:34,5:39:47:47,0,897	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44574	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.5677;MLEAC=1;MLEAF=0.500;MQ=52.45;MQ0=4;MQRankSum=-3.812;QD=0.89;ReadPosRankSum=-1.039;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2960C>T||||||	GT:AD:DP:GQ:PL	0/1:32,6:38:62:62,0,803	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44578	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8254;MLEAC=1;MLEAF=0.500;MQ=53.04;MQ0=4;MQRankSum=-4.078;QD=0.60;ReadPosRankSum=-0.453;SOR=0.527;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-2964C>T||||||	GT:AD:DP:GQ:PL	0/1:35,6:41:53:53,0,917	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44619	.	G	C	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=4;MQRankSum=-3.076;QD=0.72;ReadPosRankSum=1.713;SOR=0.822;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-3005C>G||||||	GT:AD:DP:GQ:PL	0/1:31,5:36:54:54,0,824	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44634	.	C	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.552;HaplotypeScore=2.9145;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=3;MQRankSum=-2.690;QD=0.87;ReadPosRankSum=2.340;SOR=1.469;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-3020G>A||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:56:56,0,783	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44635	.	C	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.552;HaplotypeScore=2.9145;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=3;MQRankSum=-2.690;QD=0.87;ReadPosRankSum=2.373;SOR=1.469;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-3021G>A||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:56:56,0,770	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44637	.	C	G	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.238;HaplotypeScore=3.8304;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=3;MQRankSum=-2.690;QD=0.59;ReadPosRankSum=2.279;SOR=1.498;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-3023G>C||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:47:47,0,777	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44641	.	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.238;HaplotypeScore=3.8729;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=2;MQRankSum=-2.690;QD=0.99;ReadPosRankSum=1.614;SOR=1.498;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-3027C>T||||||	GT:AD:DP:GQ:PL	0/1:27,4:31:59:59,0,723	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44680	.	T	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DP=26;Dels=0.00;ExcessHet=3.0103;FS=6.607;HaplotypeScore=7.8719;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=2;MQRankSum=-4.374;QD=2.27;ReadPosRankSum=-1.260;SOR=2.814;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-3066A>T||||||	GT:AD:DP:GQ:PL	0/1:18,3:26:76:76,0,507	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	44694	.	T	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=3.8934;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=1;MQRankSum=-4.488;QD=1.90;ReadPosRankSum=-2.011;SOR=2.807;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.190-3080A>T||||||	GT:AD:DP:GQ:PL	0/1:19,3:25:70:70,0,573	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	45007	.	T	C	671.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.99;SOR=1.230;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+3217A>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:21:51:700,51,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	45194	.	T	C	724.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.933;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=3;MQRankSum=0.000;QD=25.88;ReadPosRankSum=0.764;SOR=0.495;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+3030A>G||||||	GT:AD:DP:GQ:PL	1/1:1,27:28:54:753,54,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	45464	.	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.78;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+2760C>T||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1143,81,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	45521	.	T	G	827.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.54;SOR=0.906;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+2703A>C||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:60:856,60,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	46049	.	T	C	792.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SOR=0.770;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+2175A>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:821,60,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	46303	.	C	T	805.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.86;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+1921G>A||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:60:834,60,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	46698	.	A	G	392.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=26.18;SOR=1.473;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+1526T>C||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:421,33,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	46703	.	G	A	494.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=32.98;SOR=1.112;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+1521C>T||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:39:523,39,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	46875	.	C	T	662.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.82;SOR=0.776;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+1349G>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:691,51,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	46937	.	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.768;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-0.033;SOR=1.445;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+1287C>T||||||	GT:AD:DP:GQ:PL	0/1:10,12:22:99:359,0,239	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	47050	.	C	T	356.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=1;QD=27.44;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+1174G>A||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:27:385,27,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	47183	.	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=0.962;QD=10.51;ReadPosRankSum=2.490;SOR=1.288;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+1041A>G||||||	GT:AD:DP:GQ:PL	0/1:12,9:21:99:249,0,281	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	47370	.	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-0.547;SOR=0.760;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+854C>T||||||	GT:AD:DP:GQ:PL	0/1:7,5:12:99:138,0,260	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	47459	.	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-1.641;SOR=0.588;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+765G>A||||||	GT:AD:DP:GQ:PL	0/1:6,9:15:99:186,0,181	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	47708	.	T	C	736.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.47;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+516A>G||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:54:765,54,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	47910	.	G	A	736.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.34;SOR=1.445;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+314C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:54:765,54,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	48111	.	C	T	526.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.99;SOR=0.804;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+113G>A||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:39:555,39,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	48129	.	A	C	521.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.61;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|2/3|c.189+95T>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:550,39,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	48293	.	T	C	312.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|1/3|c.148-28A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:341,24,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	48372	.	G	A	522.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SOR=1.061;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|1/3|c.148-107C>T||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:39:551,39,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	48423	.	C	T	625.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SOR=1.270;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|1/3|c.148-158G>A||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:45:654,45,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	48537	.	T	C	558.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.970;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.28;ReadPosRankSum=-0.929;SOR=0.784;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_40645_40948|GENE_EXON_scaffold149351_cov63_40645_40948|transcript|Soaet10009290|protein_coding|1/3|c.147+181A>G||||||	GT:AD:DP:GQ:PL	1/1:2,21:23:3:585,3,0	scaffold149351_cov63	GLEAN	mRNA	40645	48864	0.79	-	.	ID=Soaet10009290
scaffold149351_cov63	163164	.	T	C	608.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.82;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding|1/1|c.151A>G|p.Lys51Glu|151/162|151/162|51/53||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding||c.*1082A>G|||||1082|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:637,45,0	scaffold149351_cov63	GLEAN	mRNA	163153	163314	0.97	-	.	ID=Soaet10009291
scaffold149351_cov63	163253	.	G	A	522.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SOR=0.804;ANN=A|missense_variant|MODERATE|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding|1/1|c.62C>T|p.Thr21Ile|62/162|62/162|21/53||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding||c.*993C>T|||||993|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,17:17:39:551,39,0	scaffold149351_cov63	GLEAN	mRNA	163153	163314	0.97	-	.	ID=Soaet10009291
scaffold149351_cov63	164411	.	T	C	728.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.70;SOR=1.508;ANN=C|synonymous_variant|LOW|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.2010A>G|p.Gly670Gly|2010/2175|2010/2175|670/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-1097A>G|||||1097|	GT:AD:DP:GQ:PL	1/1:0,21:21:54:757,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	164446	.	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.82;ReadPosRankSum=-0.267;SOR=0.627;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.1975G>A|p.Ala659Thr|1975/2175|1975/2175|659/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-1132G>A|||||1132|	GT:AD:DP:GQ:PL	0/1:8,10:18:99:331,0,274	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	164977	.	A	G	573.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.20;SOR=0.793;ANN=G|stop_lost|HIGH|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.1444T>C|p.Ter482Argext*?|1444/2175|1444/2175|482/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-1663T>C|||||1663|	GT:AD:DP:GQ:PL	1/1:0,19:19:42:602,42,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	165004	.	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-0.602;SOR=0.791;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.1417G>A|p.Gly473Arg|1417/2175|1417/2175|473/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-1690G>A|||||1690|	GT:AD:DP:GQ:PL	0/1:13,9:22:99:205,0,369	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	165325	.	A	C	426.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.10;SOR=0.804;ANN=C|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.1096T>G|p.Cys366Gly|1096/2175|1096/2175|366/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2011T>G|||||2011|	GT:AD:DP:GQ:PL	1/1:0,17:17:33:455,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	165446	.	T	C	554.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.28;SOR=1.473;ANN=C|synonymous_variant|LOW|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.975A>G|p.Leu325Leu|975/2175|975/2175|325/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2132A>G|||||2132|	GT:AD:DP:GQ:PL	1/1:0,15:15:42:583,42,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	165517	.	C	T	439.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SOR=1.061;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.904G>A|p.Ala302Thr|904/2175|904/2175|302/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2203G>A|||||2203|	GT:AD:DP:GQ:PL	1/1:0,17:17:36:468,36,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	165651	.	G	A	436.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.12;SOR=1.473;ANN=A|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.770C>T|p.Ala257Val|770/2175|770/2175|257/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2337C>T|||||2337|	GT:AD:DP:GQ:PL	1/1:0,15:15:33:465,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	165717	.	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.17;ReadPosRankSum=0.935;SOR=0.732;ANN=A|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.704C>T|p.Thr235Ile|704/2175|704/2175|235/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2403C>T|||||2403|	GT:AD:DP:GQ:PL	0/1:7,9:16:99:191,0,180	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	165739	.	C	T	433.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.11;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.682G>A|p.Asp228Asn|682/2175|682/2175|228/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2425G>A|||||2425|	GT:AD:DP:GQ:PL	1/1:0,16:16:33:462,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166090	.	CAA	C	342.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.32;RPA=10,8;RU=A;SOR=2.093;STR;ANN=C|frameshift_variant|HIGH|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.329_330delTT|p.Phe110fs|330/2175|329/2175|110/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2778_-2777delTT|||||2777|;LOF=(EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,9:11:27:380,27,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166104	.	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.405;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|5/5|c.317G>A|p.Gly106Asp|317/2175|317/2175|106/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2790G>A|||||2790|	GT:AD:DP:GQ:PL	0/1:4,6:10:99:190,0,103	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166121	.	T	C	309.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.98;SOR=2.303;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2807A>G|||||2807|,C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|4/4|c.310-10A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,10:10:24:338,24,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166147	.	C	T	259.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SOR=2.093;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2833G>A|||||2833|,T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|4/4|c.310-36G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,9:9:21:288,21,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166216	.	C	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.47;ReadPosRankSum=1.292;SOR=0.818;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2902G>C|||||2902|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|4/4|c.309+91G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,3:8:72:72,0,114	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166263	.	A	AT	591.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.31;RPA=3,4;RU=T;SOR=1.244;STR;ANN=AT|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-2950_-2949insA|||||2950|,AT|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|4/4|c.309+43_309+44insA||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,16:16:48:629,48,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166339	.	A	T	650.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.99;SOR=1.230;ANN=T|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|4/5|c.277T>A|p.Ser93Thr|277/2175|277/2175|93/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3025T>A|||||3025|	GT:AD:DP:GQ:PL	1/1:0,21:21:48:679,48,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166461	.	G	A	521.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.61;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|4/5|c.155C>T|p.Pro52Leu|155/2175|155/2175|52/724||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3147C>T|||||3147|	GT:AD:DP:GQ:PL	1/1:0,16:16:39:550,39,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166544	.	T	G	524.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.87;SOR=1.371;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|3/4|c.84+4A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3230A>C|||||3230|	GT:AD:DP:GQ:PL	1/1:0,17:17:39:553,39,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166644	.	C	T	435.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.05;SOR=1.473;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3330G>A|||||3330|,T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|2/4|c.49-61G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:464,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166868	.	T	G	621.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.61;SOR=1.508;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3554A>C|||||3554|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-90A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:48:650,48,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	166883	.	T	C	704.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.37;SOR=0.859;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3569A>G|||||3569|,C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-105A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:51:733,51,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167099	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.98;ReadPosRankSum=-0.596;SOR=0.892;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3785G>A|||||3785|,T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-321G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,9:13:91:301,0,91	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167117	.	A	G	476.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.78;SOR=0.818;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3803T>C|||||3803|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-339T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:505,36,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167297	.	T	C	725.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=0.874;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-3983A>G|||||3983|,C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-519A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:754,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167394	.	T	C	584.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.49;SOR=0.914;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4080A>G|||||4080|,C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-616A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:45:613,45,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167463	.	AT	A	316.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.79;RPA=9,8;RU=T;SOR=0.859;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4150delA|||||4150|,A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-686delA||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,11:12:33:354,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167629	.	A	G	818.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=27.29;SOR=1.143;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4315T>C|||||4315|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-851T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:60:847,60,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167634	.	T	G	852.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=28.43;SOR=1.143;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4320A>C|||||4320|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-856A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:63:881,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167660	.	C	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.483;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.040;QD=11.89;ReadPosRankSum=0.461;SOR=1.179;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4346G>C|||||4346|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-882G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,13:29:99:373,0,462	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167713	.	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.33;SOR=0.927;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4399T>C|||||4399|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-935T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:75:1048,75,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167813	.	A	G	679.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.90;ReadPosRankSum=-1.263;SOR=1.326;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4499T>C|||||4499|,G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-1035T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,21:22:51:708,51,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	167999	.	C	T	99.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.09;SOR=2.833;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4685G>A|||||4685|,T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-1221G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	168173	.	C	T	54.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.37;SOR=2.303;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149351_cov63_163153_163314|GENE_EXON_scaffold149351_cov63_163153_163314|transcript|Soaet10009291|protein_coding||c.-4859G>A|||||4859|,T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-1395G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	168420	.	A	C	713.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=0.963;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-1642T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:742,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	168448	.	G	T	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-1.113;SOR=0.473;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-1670C>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:240,0,366	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	168805	.	C	T	645.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.35;SOR=0.874;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2027G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:48:674,48,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169086	.	A	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-0.481;SOR=0.814;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2308T>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,16:26:99:416,0,277	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169125	.	A	G	677.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=27.11;SOR=0.770;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2347T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:51:706,51,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169131	.	T	C	725.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=27.91;SOR=0.846;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2353A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:54:754,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169178	.	A	G	735.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=26.28;SOR=0.836;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2400T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:57:764,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169408	.	A	G	738.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.000;QD=27.36;ReadPosRankSum=0.257;SOR=0.707;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2630T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,26:27:54:767,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169510	.	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.473;SOR=1.048;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2732C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:221,0,407	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169569	.	T	C	733.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=31.90;SOR=0.776;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2791A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:762,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169759	.	A	G	779.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.88;SOR=0.765;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2981T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:808,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169773	.	G	A	736.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.31;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-2995C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:54:765,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169823	.	TA	T	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DP=16;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.84;RPA=9,8;RU=A;ReadPosRankSum=-0.061;SOR=0.651;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-3046delT||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,5:16:99:119,0,236	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	169993	.	A	T	50.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-3215T>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	170387	.	A	C	162.9	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.15;SOR=2.303;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-3609T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,6:6:15:191,15,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	170404	.	C	T	270.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.08;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-3626G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,10:10:21:299,21,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	170457	.	C	T	385.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.56;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-3679G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:16:30:414,30,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	170644	.	A	C	596.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.41;SOR=1.292;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-3866T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:625,45,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	170707	.	T	G	754.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.45;SOR=2.124;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-3929A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,24:24:57:783,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	170874	.	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.67;SOR=0.746;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4096A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1237,90,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	170939	.	T	A	1031.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.39;SOR=0.826;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4161A>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1060,78,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171125	.	C	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;DP=34;Dels=0.00;ExcessHet=3.0103;FS=7.712;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-1.120;SOR=1.188;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4347G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,17:34:99:541,0,457	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171151	.	C	T	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.643;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.163;SOR=1.238;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4373G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,22:40:99:573,0,483	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171174	.	C	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;DP=42;Dels=0.00;ExcessHet=3.0103;FS=4.561;HaplotypeScore=4.6634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.076;SOR=0.388;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4396G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,21:42:99:538,0,551	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171228	.	G	C	1153.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.18;SOR=1.121;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4450C>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:84:1182,84,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171357	.	T	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.15;ReadPosRankSum=0.614;SOR=0.799;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4579A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,19:33:99:481,0,387	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171394	.	TG	T	1150.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.91;RPA=2,1;RU=G;SOR=0.693;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4617delC||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:29:84:1188,84,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171550	.	A	C	916.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;SOR=0.976;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4772T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:945,69,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171605	.	T	C	846.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.57;SOR=0.846;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4827A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:63:875,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171646	.	C	G	1002.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=30.55;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4868G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:75:1031,75,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171650	.	G	C	1120.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.64;SOR=1.071;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4872C>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1149,84,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171726	.	A	C	1038.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7450;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=34.63;SOR=1.143;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-4948T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:31:78:1067,78,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171836	.	A	G	702.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;SOR=0.776;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5058T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:731,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	171974	.	G	A	562.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.26;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5196C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:591,42,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	172046	.	C	T	296.78	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.98;SOR=0.892;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5268G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,9:9:24:325,24,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	172135	.	T	C	430.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.72;SOR=0.818;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5357A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:459,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	172143	.	C	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.000;SOR=1.431;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5365G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,7:15:99:162,0,225	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	172240	.	T	C	603.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.75;SOR=0.990;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5462A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:45:632,45,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	172283	.	A	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=0.904;QD=9.17;ReadPosRankSum=-0.925;SOR=1.190;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5505T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,6:16:99:175,0,295	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	172647	.	G	A	983.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SOR=0.957;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.43-5869C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:1012,72,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	180470	.	G	T	721.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=32.81;SOR=1.085;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+5526C>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:54:750,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	180491	.	G	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=0;MQRankSum=-0.274;QD=9.76;ReadPosRankSum=0.206;SOR=0.859;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+5505C>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,8:22:99:243,0,367	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	180634	.	G	A	348.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SOR=0.859;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+5362C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:377,27,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	180683	.	T	A	446.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=29.78;SOR=0.818;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+5313A>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:475,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	180694	.	T	C	443.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=29.58;SOR=0.818;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+5302A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:472,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	180741	.	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=1.927;QD=14.07;ReadPosRankSum=-0.657;SOR=0.387;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+5255G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:366,0,243	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181043	.	G	A	935.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.19;SOR=0.756;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4953C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:964,69,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181085	.	G	A	627.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.870;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.42;ReadPosRankSum=-0.248;SOR=0.252;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4911C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,27:29:45:656,45,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181096	.	T	G	763.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.28;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4900A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:57:792,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181313	.	A	G	776.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.77;SOR=0.765;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4683T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:57:805,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181383	.	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=1.327;QD=14.74;ReadPosRankSum=-0.463;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4613C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,12:20:99:323,0,206	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181740	.	C	T	850.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.51;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4256G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:879,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181754	.	T	C	830.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.23;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4242A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:63:859,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181886	.	C	T	857.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.58;SOR=0.906;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4110G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:66:886,66,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181915	.	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.54;SOR=1.071;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4081A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:78:1078,78,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	181985	.	T	A	1180.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.07;SOR=0.798;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+4011A>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1209,87,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182018	.	G	GT	1186.73	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=32.96;RPA=6,7;RU=T;SOR=0.804;STR;ANN=GT|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3977_42+3978insA||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1224,108,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182028	.	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=1;QD=28.66;SOR=0.749;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3968G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:37:81:1060,81,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182064	.	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.84;ReadPosRankSum=1.038;SOR=0.675;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3932C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,20:38:99:554,0,614	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182238	.	T	C	745.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.68;SOR=1.445;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3758A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:57:774,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182267	.	A	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-1.267;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3729T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:203,0,286	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182286	.	G	A	467.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.18;SOR=1.911;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3710C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:36:496,36,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182289	.	G	C	441.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.45;SOR=1.911;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3707C>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,15:15:33:470,33,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182359	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-3.130;SOR=0.790;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3637G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:208,0,211	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182451	.	T	C	250.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.30;ReadPosRankSum=1.069;SOR=0.223;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3545A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,12:13:16:279,0,16	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182525	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.29;ReadPosRankSum=0.431;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3471G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,151	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182670	.	A	T	348.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.83;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3326T>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:377,27,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182754	.	G	A	570.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SOR=0.914;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3242C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:599,42,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182818	.	G	T	621.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4522;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;SOR=1.402;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3178C>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:650,48,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182867	.	C	A	1002.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.811;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=33.43;ReadPosRankSum=-0.694;SOR=0.602;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3129G>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,29:30:75:1031,75,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	182968	.	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.32;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+3028A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:81:1127,81,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183012	.	A	T	1255.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.88;SOR=1.061;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2984T>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:37:96:1284,96,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183032	.	CG	C	537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.79;RPA=5,4;RU=G;ReadPosRankSum=0.662;SOR=0.813;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2963delC||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:575,0,669	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183107	.	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.55;SOR=0.739;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2889A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1471,108,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183328	.	A	C	1113.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.81;SOR=1.112;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2668T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1142,81,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183403	.	T	C	764.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.31;ReadPosRankSum=-1.238;SOR=0.568;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2593A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,27:28:57:793,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183512	.	C	T	811.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.07;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2484G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:60:840,60,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183515	.	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.64;ReadPosRankSum=1.642;SOR=0.991;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2481C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,13:26:99:331,0,303	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183565	.	C	T	13.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.539;HaplotypeScore=3.9148;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=-5.312;QD=0.46;ReadPosRankSum=-1.038;SOR=2.194;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2431G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,3:30:42:42,0,865	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183572	.	C	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.495;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=1.218;QD=7.27;ReadPosRankSum=1.293;SOR=0.200;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2424G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,10:33:99:268,0,690	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183588	.	G	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.642;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-5.684;QD=1.11;ReadPosRankSum=-0.187;SOR=2.542;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2408C>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,4:34:66:66,0,958	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183589	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.642;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-5.684;QD=1.02;ReadPosRankSum=-0.080;SOR=2.542;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2407C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,4:34:63:63,0,983	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183603	.	C	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;DP=36;Dels=0.00;ExcessHet=3.0103;FS=8.346;HaplotypeScore=6.4926;MLEAC=1;MLEAF=0.500;MQ=57.95;MQ0=0;MQRankSum=-5.858;QD=1.83;ReadPosRankSum=0.297;SOR=2.786;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2393G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,5:36:94:94,0,1057	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183623	.	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.896;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-5.938;QD=1.35;ReadPosRankSum=0.309;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2373G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,6:37:78:78,0,958	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183642	.	C	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-5.853;QD=1.72;ReadPosRankSum=0.807;SOR=1.051;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2354G>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,6:36:90:90,0,969	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183646	.	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-5.853;QD=2.08;ReadPosRankSum=0.956;SOR=1.051;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2350T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,6:36:99:103,0,870	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183647	.	C	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-5.853;QD=2.08;ReadPosRankSum=1.019;SOR=1.051;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2349G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,6:36:99:103,0,966	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183661	.	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.543;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-6.241;QD=2.12;ReadPosRankSum=0.110;SOR=0.357;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2335C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,9:41:99:115,0,1020	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183663	.	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.543;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-6.241;QD=2.12;ReadPosRankSum=0.284;SOR=0.357;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2333G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,9:41:99:115,0,996	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183685	.	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=56.18;MQ0=0;MQRankSum=-6.323;QD=2.16;ReadPosRankSum=1.028;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2311C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,9:42:99:119,0,1013	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183701	.	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.618;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=-6.571;QD=2.02;ReadPosRankSum=1.560;SOR=1.006;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2295C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,8:45:99:119,0,1032	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183708	.	C	T	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.595;HaplotypeScore=4.5279;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=6.767;QD=22.70;ReadPosRankSum=-1.331;SOR=0.731;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2288G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,39:47:99:1095,0,111	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183713	.	T	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;DP=46;Dels=0.00;ExcessHet=3.0103;FS=3.456;HaplotypeScore=5.5252;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=0;MQRankSum=-6.648;QD=1.99;ReadPosRankSum=1.204;SOR=1.071;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2283A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:38,8:46:99:120,0,950	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183719	.	G	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.850;HaplotypeScore=5.5252;MLEAC=1;MLEAF=0.500;MQ=56.72;MQ0=0;MQRankSum=-6.502;QD=1.99;ReadPosRankSum=1.493;SOR=1.555;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2277C>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,7:44:99:116,0,1039	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183730	.	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.850;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=56.72;MQ0=0;MQRankSum=-6.502;QD=1.68;ReadPosRankSum=0.530;SOR=1.555;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2266A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:37,7:44:99:102,0,1115	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183755	.	A	G	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;DP=45;Dels=0.00;ExcessHet=3.0103;FS=9.441;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-6.585;QD=0.33;ReadPosRankSum=0.259;SOR=3.255;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2241T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:41,4:45:43:43,0,1170	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183759	.	A	T	16.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;DP=46;Dels=0.00;ExcessHet=3.0103;FS=9.424;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.25;MQ0=0;MQRankSum=-6.661;QD=0.37;ReadPosRankSum=0.020;SOR=3.258;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2237T>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:42,4:46:45:45,0,1152	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183907	.	C	G	1192.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.39;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2089G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1221,87,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183917	.	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.96;SOR=1.244;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2079C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:75:1047,75,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	183958	.	T	C	869.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SOR=1.942;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+2038A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:898,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184078	.	C	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.848;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.423;SOR=1.122;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1918G>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:10,11:21:99:337,0,240	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184339	.	A	G	1044.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.02;SOR=0.804;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1657T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1073,78,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184365	.	C	T	1320.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.21;SOR=0.843;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1631G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,41:41:96:1349,96,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184392	.	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.63;SOR=0.798;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1604T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1192,84,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184394	.	C	A	1161.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.815;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.57;ReadPosRankSum=0.730;SOR=0.306;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1602G>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,37:38:87:1190,87,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184410	.	A	T	1243.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;SOR=0.798;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1586T>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1272,90,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184633	.	C	T	717.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.18;SOR=0.784;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1363G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:54:746,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184682	.	C	T	520.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SOR=0.784;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1314G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:39:549,39,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184789	.	A	G	763.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.72;SOR=1.085;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1207T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,22:22:57:792,57,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184801	.	T	G	686.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.70;SOR=0.990;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1195A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,21:21:51:715,51,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184847	.	A	G	876.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.23;SOR=1.460;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1149T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:66:905,66,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184949	.	G	T	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.352;HaplotypeScore=3.9021;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=2;MQRankSum=1.441;QD=12.09;ReadPosRankSum=1.114;SOR=1.272;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1047C>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,14:32:99:403,0,363	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	184951	.	A	C	865.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9021;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=2;QD=30.92;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+1045T>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:32:63:894,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185000	.	T	C	5749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;DP=250;Dels=0.00;ExcessHet=3.0103;FS=7.551;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.64;MQ0=2;MQRankSum=-2.322;QD=23.00;ReadPosRankSum=-9.654;SOR=1.149;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+996A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,228:250:99:5778,0,166	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185006	.	A	G	5852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;DP=250;Dels=0.00;ExcessHet=3.0103;FS=4.530;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=2;MQRankSum=-2.352;QD=23.41;ReadPosRankSum=-8.717;SOR=1.065;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+990T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,228:250:99:5881,0,242	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185009	.	T	C	5816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;DP=250;Dels=0.00;ExcessHet=3.0103;FS=4.224;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.65;MQ0=2;MQRankSum=-2.589;QD=23.27;ReadPosRankSum=-5.350;SOR=1.135;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+987A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,225:250:99:5845,0,310	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185019	.	T	C	5863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DP=250;Dels=0.00;ExcessHet=3.0103;FS=4.171;HaplotypeScore=6.6630;MLEAC=1;MLEAF=0.500;MQ=55.62;MQ0=2;MQRankSum=-2.441;QD=23.46;ReadPosRankSum=-2.236;SOR=1.023;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+977A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,227:250:99:5892,0,312	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185058	.	G	A	813.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.30;SOR=0.846;ANN=A|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+938C>T||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:26:60:842,60,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185077	.	A	T	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.55;ReadPosRankSum=0.880;SOR=0.603;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+919T>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:421,0,381	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185127	.	T	G	869.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.21;SOR=0.922;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+869A>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:66:898,66,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185201	.	C	T	847.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.40;SOR=0.765;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+795G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:876,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185328	.	C	T	854.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.47;SOR=1.255;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+668G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:63:883,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185634	.	C	T	716.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SOR=0.997;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+362G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:54:745,54,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185645	.	A	G	819.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.36;SOR=0.922;ANN=G|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+351T>C||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:63:848,63,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185692	.	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.54;SOR=0.756;ANN=T|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+304G>A||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1099,78,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185736	.	T	C	997.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=32.19;SOR=1.044;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+260A>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1026,75,0	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149351_cov63	185807	.	G	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.483;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.65;ReadPosRankSum=0.615;SOR=0.368;ANN=C|intron_variant|MODIFIER|EXON_scaffold149351_cov63_164246_166111|GENE_EXON_scaffold149351_cov63_164246_166111|transcript|Soaet10009292|protein_coding|1/4|c.42+189C>G||||||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,16:29:99:511,0,330	scaffold149351_cov63	GLEAN	mRNA	164246	186037	0.42	-	.	ID=Soaet10009292
scaffold149419_cov61	8267	.	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=20;Dels=0.00;ExcessHet=3.0103;FS=20.901;HaplotypeScore=2.5747;MLEAC=1;MLEAF=0.500;MQ=55.97;MQ0=0;MQRankSum=-0.937;QD=1.89;ReadPosRankSum=-1.486;SOR=3.588;ANN=G|intron_variant|MODIFIER|EXON_scaffold149419_cov61_5074_5321|GENE_EXON_scaffold149419_cov61_5074_5321|transcript|Soaet10008705|protein_coding|3/11|c.546+133T>G||||||	GT:AD:DP:GQ:PL	0/1:15,5:20:66:66,0,180	scaffold149419_cov61	GLEAN	mRNA	5074	14343	1.00	+	.	ID=Soaet10008705
scaffold149419_cov61	13764	.	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-2.010;SOR=0.750;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_14815_15003|GENE_EXON_scaffold149419_cov61_14815_15003|transcript|Soaet10008706|protein_coding||c.*1051G>A|||||1051|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_5074_5321|GENE_EXON_scaffold149419_cov61_5074_5321|transcript|Soaet10008705|protein_coding|10/11|c.1315-194C>T||||||	GT:AD:DP:GQ:PL	0/1:17,13:30:99:343,0,395	scaffold149419_cov61	GLEAN	mRNA	5074	14343	1.00	+	.	ID=Soaet10008705
scaffold149419_cov61	87267	.	TTGA	T	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;DP=38;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.91;RPA=2,1;RU=TGA;ReadPosRankSum=0.562;SOR=0.411;STR;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.-3086_-3084delTGA|||||3086|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_86947_87238|GENE_EXON_scaffold149419_cov61_86947_87238|transcript|Soaet10008711|protein_coding|5/5|c.729-32_729-30delTCA||||||	GT:AD:DP:GQ:PL	0/1:17,18:38:99:839,0,855	scaffold149419_cov61	GLEAN	mRNA	86947	88868	0.31	-	.	ID=Soaet10008711
scaffold149419_cov61	87274	.	A	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.213;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.290;HaplotypeScore=3.9065;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=1.328;QD=10.36;ReadPosRankSum=2.130;SOR=0.412;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.-3080A>C|||||3080|,C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_86947_87238|GENE_EXON_scaffold149419_cov61_86947_87238|transcript|Soaet10008711|protein_coding|5/5|c.729-36T>G||||||	GT:AD:DP:GQ:PL	0/1:21,17:38:99:422,0,523	scaffold149419_cov61	GLEAN	mRNA	86947	88868	0.31	-	.	ID=Soaet10008711
scaffold149419_cov61	87645	.	A	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.81;MQ0=0;MQRankSum=0.084;QD=14.29;ReadPosRankSum=0.000;SOR=0.693;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.-2709A>C|||||2709|,C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_86947_87238|GENE_EXON_scaffold149419_cov61_86947_87238|transcript|Soaet10008711|protein_coding|4/5|c.652+180T>G||||||	GT:AD:DP:GQ:PL	0/1:2,4:6:69:114,0,69	scaffold149419_cov61	GLEAN	mRNA	86947	88868	0.31	-	.	ID=Soaet10008711
scaffold149419_cov61	87657	.	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=0;MQRankSum=-0.792;QD=8.11;ReadPosRankSum=-1.068;SOR=1.022;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.-2697A>G|||||2697|,G|intron_variant|MODIFIER|EXON_scaffold149419_cov61_86947_87238|GENE_EXON_scaffold149419_cov61_86947_87238|transcript|Soaet10008711|protein_coding|4/5|c.652+168T>C||||||	GT:AD:DP:GQ:PL	0/1:2,5:7:54:85,0,54	scaffold149419_cov61	GLEAN	mRNA	86947	88868	0.31	-	.	ID=Soaet10008711
scaffold149419_cov61	91581	.	A	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-0.802;SOR=2.093;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_86947_87238|GENE_EXON_scaffold149419_cov61_86947_87238|transcript|Soaet10008711|protein_coding||c.-2713T>A|||||2713|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding|1/7|c.467-245A>T||||||	GT:AD:DP:GQ:PL	0/1:8,9:17:99:269,0,242	scaffold149419_cov61	GLEAN	mRNA	90354	97314	1.00	+	.	ID=Soaet10008712
scaffold149419_cov61	94695	.	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.83;ReadPosRankSum=0.413;SOR=0.446;ANN=T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding|5/7|c.1296+240C>T||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:260,0,123	scaffold149419_cov61	GLEAN	mRNA	90354	97314	1.00	+	.	ID=Soaet10008712
scaffold149419_cov61	95220	.	TGATTCGCTCTGTG	T	1722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.88;ReadPosRankSum=0.875;SOR=0.721;ANN=T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding|5/7|c.1297-710_1297-698delGATTCGCTCTGTG||||||	GT:AD:DP:GQ:PL	0/1:9,11:20:99:1760,0,1428	scaffold149419_cov61	GLEAN	mRNA	90354	97314	1.00	+	.	ID=Soaet10008712
scaffold149419_cov61	100931	.	C	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.619;HaplotypeScore=9.2344;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-4.843;QD=0.68;ReadPosRankSum=-2.394;SOR=2.235;ANN=T|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.79C>T|p.Leu27Leu|79/1662|79/1662|27/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*3617C>T|||||3617|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*4130G>A|||||4130|	GT:AD:DP:GQ:PL	0/1:29,3:32:50:50,0,847	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	100936	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.997;HaplotypeScore=8.4000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=-4.995;QD=0.33;ReadPosRankSum=-2.066;SOR=2.494;ANN=T|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.84C>T|p.Phe28Phe|84/1662|84/1662|28/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*3622C>T|||||3622|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*4125G>A|||||4125|	GT:AD:DP:GQ:PL	0/1:31,3:34:39:39,0,963	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	100937	.	T	C	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.997;HaplotypeScore=8.4000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=-4.995;QD=0.30;ReadPosRankSum=-2.006;SOR=2.494;ANN=C|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.85T>C|p.Tyr29His|85/1662|85/1662|29/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*3623T>C|||||3623|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*4124A>G|||||4124|	GT:AD:DP:GQ:PL	0/1:31,3:34:38:38,0,917	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101008	.	G	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.039;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.536;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=-4.004;QD=1.32;ReadPosRankSum=-0.915;SOR=1.744;ANN=T|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.156G>T|p.Gly52Gly|156/1662|156/1662|52/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*3694G>T|||||3694|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*4053C>A|||||4053|	GT:AD:DP:GQ:PL	0/1:47,9:56:99:102,0,1467	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101246	.	T	C	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.558;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.31;ReadPosRankSum=1.471;SOR=0.999;ANN=C|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.394T>C|p.Phe132Leu|394/1662|394/1662|132/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*3932T>C|||||3932|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3815A>G|||||3815|	GT:AD:DP:GQ:PL	0/1:33,27:60:99:767,0,961	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101247	.	T	A	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=58;Dels=0.00;ExcessHet=3.0103;FS=3.749;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.62;ReadPosRankSum=1.146;SOR=0.936;ANN=A|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.395T>A|p.Phe132Tyr|395/1662|395/1662|132/553||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*3933T>A|||||3933|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3814A>T|||||3814|	GT:AD:DP:GQ:PL	0/1:31,27:58:99:760,0,933	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101251	.	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.341;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.48;ReadPosRankSum=1.255;SOR=0.936;ANN=T|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.399C>T|p.Arg133Arg|399/1662|399/1662|133/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*3937C>T|||||3937|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3810G>A|||||3810|	GT:AD:DP:GQ:PL	0/1:31,27:58:99:752,0,1001	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101314	.	G	C	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.975;HaplotypeScore=3.6203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-1.919;SOR=0.635;ANN=C|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.462G>C|p.Glu154Asp|462/1662|462/1662|154/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4000G>C|||||4000|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3747C>G|||||3747|	GT:AD:DP:GQ:PL	0/1:28,33:61:99:948,0,761	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101482	.	G	A	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=68;Dels=0.00;ExcessHet=3.0103;FS=4.666;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.504;SOR=0.545;ANN=A|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.630G>A|p.Leu210Leu|630/1662|630/1662|210/553||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4168G>A|||||4168|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3579C>T|||||3579|	GT:AD:DP:GQ:PL	0/1:32,36:68:99:896,0,821	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101484	.	C	T	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;DP=69;Dels=0.00;ExcessHet=3.0103;FS=4.736;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.613;SOR=0.518;ANN=T|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.632C>T|p.Thr211Ile|632/1662|632/1662|211/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4170C>T|||||4170|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3577G>A|||||3577|	GT:AD:DP:GQ:PL	0/1:33,36:69:99:871,0,813	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101488	.	C	T	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;DP=69;Dels=0.00;ExcessHet=3.0103;FS=4.736;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.29;ReadPosRankSum=0.625;SOR=0.518;ANN=T|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.636C>T|p.Pro212Pro|636/1662|636/1662|212/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4174C>T|||||4174|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3573G>A|||||3573|	GT:AD:DP:GQ:PL	0/1:33,36:69:99:876,0,887	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101490	.	A	G	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DP=69;Dels=0.00;ExcessHet=3.0103;FS=6.435;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.559;SOR=0.460;ANN=G|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.638A>G|p.Glu213Gly|638/1662|638/1662|213/553||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4176A>G|||||4176|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3571T>C|||||3571|	GT:AD:DP:GQ:PL	0/1:33,36:69:99:900,0,838	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101548	.	A	G	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.167;QD=13.81;ReadPosRankSum=0.774;SOR=0.734;ANN=G|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.696A>G|p.Arg232Arg|696/1662|696/1662|232/553||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4234A>G|||||4234|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3513T>C|||||3513|	GT:AD:DP:GQ:PL	0/1:38,48:86:99:1216,0,969	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101551	.	T	C	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=0.171;QD=14.68;ReadPosRankSum=0.798;SOR=0.745;ANN=C|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.699T>C|p.Phe233Phe|699/1662|699/1662|233/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4237T>C|||||4237|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3510A>G|||||3510|	GT:AD:DP:GQ:PL	0/1:37,47:84:99:1261,0,968	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101656	.	A	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.609;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-1.030;SOR=0.252;ANN=T|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.804A>T|p.Val268Val|804/1662|804/1662|268/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4342A>T|||||4342|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3405T>A|||||3405|	GT:AD:DP:GQ:PL	0/1:41,26:68:99:789,0,1158	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101944	.	T	C	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5784;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=1;MQRankSum=1.142;QD=16.50;ReadPosRankSum=1.349;SOR=0.683;ANN=C|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.1092T>C|p.Asp364Asp|1092/1662|1092/1662|364/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4630T>C|||||4630|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3117A>G|||||3117|	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1266,0,946	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101968	.	T	C	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=80;Dels=0.00;ExcessHet=3.0103;FS=4.451;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=1;MQRankSum=0.000;QD=14.97;ReadPosRankSum=1.217;SOR=1.150;ANN=C|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.1116T>C|p.Asn372Asn|1116/1662|1116/1662|372/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4654T>C|||||4654|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3093A>G|||||3093|	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1226,0,1036	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	101991	.	T	C	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;DP=80;Dels=0.00;ExcessHet=3.0103;FS=4.375;HaplotypeScore=6.2839;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=1;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-0.059;SOR=0.871;ANN=C|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.1139T>C|p.Val380Ala|1139/1662|1139/1662|380/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4677T>C|||||4677|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*3070A>G|||||3070|	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1206,0,1126	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102078	.	A	G	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.466;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.33;ReadPosRankSum=-1.542;SOR=0.463;ANN=G|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.1226A>G|p.Glu409Gly|1226/1662|1226/1662|409/553||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4764A>G|||||4764|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2983T>C|||||2983|	GT:AD:DP:GQ:PL	0/1:30,33:63:99:931,0,909	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102127	.	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.36;ReadPosRankSum=0.611;SOR=0.856;ANN=T|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.1275C>T|p.Arg425Arg|1275/1662|1275/1662|425/553||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4813C>T|||||4813|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2934G>A|||||2934|	GT:AD:DP:GQ:PL	0/1:25,25:50:99:796,0,745	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102142	.	A	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.116;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.98;ReadPosRankSum=1.447;SOR=1.145;ANN=C|synonymous_variant|LOW|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/2|c.1290A>C|p.Ile430Ile|1290/1662|1290/1662|430/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4828A>C|||||4828|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2919T>G|||||2919|	GT:AD:DP:GQ:PL	0/1:29,23:52:99:651,0,878	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102265	.	T	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.052;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-1.377;SOR=0.477;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4951T>C|||||4951|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2796A>G|||||2796|,C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/1|c.1359-51T>C||||||	GT:AD:DP:GQ:PL	0/1:24,29:53:99:871,0,764	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102270	.	A	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-1.215;SOR=0.547;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4956A>C|||||4956|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2791T>G|||||2791|,C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/1|c.1359-46A>C||||||	GT:AD:DP:GQ:PL	0/1:25,29:54:99:874,0,793	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102295	.	C	CATA	1613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;DP=54;ExcessHet=3.0103;FS=4.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.86;RPA=2,3;RU=ATA;ReadPosRankSum=-2.496;SOR=0.232;STR;ANN=CATA|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_90354_90819|GENE_EXON_scaffold149419_cov61_90354_90819|transcript|Soaet10008712|protein_coding||c.*4981_*4982insATA|||||4982|,CATA|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2765_*2766insTAT|||||2765|,CATA|intron_variant|MODIFIER|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|1/1|c.1359-21_1359-20insATA||||||	GT:AD:DP:GQ:PL	0/1:14,32:54:99:1651,0,651	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102522	.	G	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.263;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-2.265;QD=11.89;ReadPosRankSum=-0.020;SOR=1.038;ANN=A|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|2/2|c.1565G>A|p.Ser522Asn|1565/1662|1565/1662|522/553||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2539C>T|||||2539|	GT:AD:DP:GQ:PL	0/1:27,22:49:99:611,0,744	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102546	.	T	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-2.619;QD=9.23;ReadPosRankSum=-0.259;SOR=0.733;ANN=C|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|2/2|c.1589T>C|p.Leu530Pro|1589/1662|1589/1662|530/553||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2515A>G|||||2515|	GT:AD:DP:GQ:PL	0/1:26,16:42:99:416,0,710	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	102566	.	C	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=-2.804;QD=8.56;ReadPosRankSum=-1.432;SOR=0.706;ANN=A|missense_variant|MODERATE|EXON_scaffold149419_cov61_100853_102210|GENE_EXON_scaffold149419_cov61_100853_102210|transcript|Soaet10008713|protein_coding|2/2|c.1609C>A|p.Leu537Met|1609/1662|1609/1662|537/553||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.*2495G>T|||||2495|	GT:AD:DP:GQ:PL	0/1:24,13:37:99:345,0,651	scaffold149419_cov61	GLEAN	mRNA	100853	102619	1.00	+	.	ID=Soaet10008713
scaffold149419_cov61	108519	.	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=1;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-0.737;SOR=1.008;ANN=C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding|1/10|c.196-302A>G||||||	GT:AD:DP:GQ:PL	0/1:15,14:29:99:434,0,370	scaffold149419_cov61	GLEAN	mRNA	105061	109917	0.69	-	.	ID=Soaet10008714
scaffold149419_cov61	113931	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.47;ReadPosRankSum=2.173;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold149419_cov61_113662_113950|GENE_EXON_scaffold149419_cov61_113662_113950|transcript|Soaet10008715|protein_coding|4/4|c.259G>A|p.Glu87Lys|259/528|259/528|87/175||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.-4014G>A|||||4014|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_118263_118451|GENE_EXON_scaffold149419_cov61_118263_118451|transcript|Soaet10008716|protein_coding||c.*4332G>A|||||4332|	GT:AD:DP:GQ:PL	0/1:16,7:25:99:154,0,430	scaffold149419_cov61	GLEAN	mRNA	113662	115797	0.96	-	.	ID=Soaet10008715
scaffold149419_cov61	114116	.	T	C	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.93;ReadPosRankSum=-1.314;SOR=0.634;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.-4199A>G|||||4199|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_118263_118451|GENE_EXON_scaffold149419_cov61_118263_118451|transcript|Soaet10008716|protein_coding||c.*4147A>G|||||4147|,C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_113662_113950|GENE_EXON_scaffold149419_cov61_113662_113950|transcript|Soaet10008715|protein_coding|3/3|c.240-166A>G||||||	GT:AD:DP:GQ:PL	0/1:9,21:30:99:536,0,190	scaffold149419_cov61	GLEAN	mRNA	113662	115797	0.96	-	.	ID=Soaet10008715
scaffold149419_cov61	114209	.	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.51;ReadPosRankSum=0.890;SOR=0.495;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.-4292T>C|||||4292|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_118263_118451|GENE_EXON_scaffold149419_cov61_118263_118451|transcript|Soaet10008716|protein_coding||c.*4054T>C|||||4054|,G|intron_variant|MODIFIER|EXON_scaffold149419_cov61_113662_113950|GENE_EXON_scaffold149419_cov61_113662_113950|transcript|Soaet10008715|protein_coding|3/3|c.240-259T>C||||||	GT:AD:DP:GQ:PL	0/1:7,12:19:99:266,0,180	scaffold149419_cov61	GLEAN	mRNA	113662	115797	0.96	-	.	ID=Soaet10008715
scaffold149419_cov61	114390	.	A	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=5;Dels=0.00;ExcessHet=3.0103;FS=10.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.524;SOR=2.204;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_105061_105144|GENE_EXON_scaffold149419_cov61_105061_105144|transcript|Soaet10008714|protein_coding||c.-4473T>G|||||4473|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_118263_118451|GENE_EXON_scaffold149419_cov61_118263_118451|transcript|Soaet10008716|protein_coding||c.*3873T>G|||||3873|,C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_113662_113950|GENE_EXON_scaffold149419_cov61_113662_113950|transcript|Soaet10008715|protein_coding|3/3|c.239+350T>G||||||	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,109	scaffold149419_cov61	GLEAN	mRNA	113662	115797	0.96	-	.	ID=Soaet10008715
scaffold149419_cov61	119982	.	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=4.7308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-1.540;SOR=1.265;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_113662_113950|GENE_EXON_scaffold149419_cov61_113662_113950|transcript|Soaet10008715|protein_coding||c.-4185C>T|||||4185|,A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_118263_118451|GENE_EXON_scaffold149419_cov61_118263_118451|transcript|Soaet10008716|protein_coding|3/6|c.191-65C>T||||||	GT:AD:DP:GQ:PL	0/1:13,6:19:99:170,0,307	scaffold149419_cov61	GLEAN	mRNA	118263	120939	0.86	-	.	ID=Soaet10008716
scaffold149419_cov61	131971	.	C	CA	100.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.40;RPA=16,17;RU=A;SOR=1.609;STR;ANN=CA|intron_variant|MODIFIER|EXON_scaffold149419_cov61_130110_130253|GENE_EXON_scaffold149419_cov61_130110_130253|transcript|Soaet10008717|protein_coding|2/5|c.207+460_207+461insA||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:21:138,21,0	scaffold149419_cov61	GLEAN	mRNA	130110	136054	0.57	+	.	ID=Soaet10008717
scaffold149419_cov61	150116	.	C	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.338;SOR=0.657;ANN=A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_148864_148971|GENE_EXON_scaffold149419_cov61_148864_148971|transcript|Soaet10008719|protein_coding|11/13|c.870+21G>T||||||	GT:AD:DP:GQ:PL	0/1:11,15:27:99:396,0,344	scaffold149419_cov61	GLEAN	mRNA	148864	153206	0.76	-	.	ID=Soaet10008719
scaffold149419_cov61	151319	.	CT	C	730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DP=29;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.06;RPA=2,1;RU=T;ReadPosRankSum=0.886;SOR=0.525;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_148864_148971|GENE_EXON_scaffold149419_cov61_148864_148971|transcript|Soaet10008719|protein_coding|6/13|c.477-104delA||||||	GT:AD:DP:GQ:PL	0/1:7,20:29:99:768,0,216	scaffold149419_cov61	GLEAN	mRNA	148864	153206	0.76	-	.	ID=Soaet10008719
scaffold149419_cov61	151477	.	ATCTGTTTCAATTTGTTTGTCTGGTTTTGAC	A	2546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.19;ReadPosRankSum=2.363;SOR=0.425;ANN=A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_148864_148971|GENE_EXON_scaffold149419_cov61_148864_148971|transcript|Soaet10008719|protein_coding|6/13|c.476+160_476+189delGTCAAAACCAGACAAACAAATTGAAACAGA||||||	GT:AD:DP:GQ:PL	0/1:17,8:28:99:2584,0,5346	scaffold149419_cov61	GLEAN	mRNA	148864	153206	0.76	-	.	ID=Soaet10008719
scaffold149419_cov61	172668	.	A	AG	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;DP=29;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.500;MQ=60.74;MQ0=0;MQRankSum=1.765;QD=12.37;RPA=2,3;RU=G;ReadPosRankSum=-2.192;SOR=0.836;STR;ANN=AG|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_168136_168390|GENE_EXON_scaffold149419_cov61_168136_168390|transcript|Soaet10008724|protein_coding||c.*4278_*4279insG|||||4279|,AG|intron_variant|MODIFIER|EXON_scaffold149419_cov61_169119_169429|GENE_EXON_scaffold149419_cov61_169119_169429|transcript|Soaet10008725|protein_coding|6/14|c.555-75_555-74insC||||||	GT:AD:DP:GQ:PL	0/1:17,12:29:99:396,0,597	scaffold149419_cov61	GLEAN	mRNA	169119	175351	0.13	-	.	ID=Soaet10008725
scaffold149419_cov61	213198	.	A	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=-2.773;QD=2.52;ReadPosRankSum=-1.293;SOR=1.508;ANN=T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding|1/3|c.630+2260A>T||||||	GT:AD:DP:GQ:PL	0/1:12,5:17:71:71,0,358	scaffold149419_cov61	GLEAN	mRNA	210309	216736	0.70	+	.	ID=Soaet10008730
scaffold149419_cov61	213233	.	T	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DP=43;Dels=0.00;ExcessHet=3.0103;FS=22.825;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=41.62;MQ0=13;MQRankSum=-5.148;QD=3.32;ReadPosRankSum=-3.624;SOR=3.592;ANN=A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding|1/3|c.630+2295T>A||||||	GT:AD:DP:GQ:PL	0/1:18,25:43:99:171,0,525	scaffold149419_cov61	GLEAN	mRNA	210309	216736	0.70	+	.	ID=Soaet10008730
scaffold149419_cov61	213239	.	C	G	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.340;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=42.13;MQ0=13;MQRankSum=-1.106;QD=0.59;ReadPosRankSum=-1.292;SOR=2.833;ANN=G|intron_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding|1/3|c.630+2301C>G||||||	GT:AD:DP:GQ:PL	0/1:41,3:44:54:54,0,675	scaffold149419_cov61	GLEAN	mRNA	210309	216736	0.70	+	.	ID=Soaet10008730
scaffold149419_cov61	214613	.	A	T	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.51;ReadPosRankSum=0.040;SOR=1.182;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding||c.*4210T>A|||||4210|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding|1/3|c.631-1633A>T||||||	GT:AD:DP:GQ:PL	0/1:15,16:31:99:478,0,396	scaffold149419_cov61	GLEAN	mRNA	210309	216736	0.70	+	.	ID=Soaet10008730
scaffold149419_cov61	219634	.	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.64;MQ0=0;MQRankSum=-4.799;QD=3.03;ReadPosRankSum=-3.157;SOR=1.483;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4370G>A|||||4370|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2898G>A|||||2898|,A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-111C>T||||||	GT:AD:DP:GQ:PL	0/1:19,6:25:99:104,0,616	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219644	.	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.06;MQ0=0;MQRankSum=-5.009;QD=2.70;ReadPosRankSum=-2.163;SOR=1.552;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4360G>A|||||4360|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2908G>A|||||2908|,A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-121C>T||||||	GT:AD:DP:GQ:PL	0/1:21,6:27:99:101,0,647	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219647	.	T	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.73;MQ0=0;MQRankSum=-5.093;QD=3.78;ReadPosRankSum=-2.395;SOR=1.802;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4357T>A|||||4357|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2911T>A|||||2911|,A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-124A>T||||||	GT:AD:DP:GQ:PL	0/1:21,7:28:99:134,0,640	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219667	.	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=1.8824;MLEAC=1;MLEAF=0.500;MQ=54.05;MQ0=0;MQRankSum=-5.089;QD=4.22;ReadPosRankSum=-0.264;SOR=1.609;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4337T>C|||||4337|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2931T>C|||||2931|,C|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-144A>G||||||	GT:AD:DP:GQ:PL	0/1:26,9:35:99:176,0,701	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219670	.	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.87;MQ0=0;MQRankSum=-4.993;QD=4.29;ReadPosRankSum=-0.293;SOR=1.473;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4334C>T|||||4334|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2934C>T|||||2934|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-147G>A||||||	GT:AD:DP:GQ:PL	0/1:25,9:34:99:174,0,727	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219677	.	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=54.23;MQ0=0;MQRankSum=-5.182;QD=3.66;ReadPosRankSum=0.914;SOR=1.514;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4327G>A|||||4327|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2941G>A|||||2941|,A|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-154C>T||||||	GT:AD:DP:GQ:PL	0/1:27,9:36:99:160,0,769	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219682	.	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=54.55;MQ0=0;MQRankSum=-5.363;QD=3.20;ReadPosRankSum=1.633;SOR=1.550;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4322C>T|||||4322|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2946C>T|||||2946|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-159G>A||||||	GT:AD:DP:GQ:PL	0/1:29,9:38:99:150,0,794	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219684	.	G	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.675;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=0;MQRankSum=-5.813;QD=3.94;ReadPosRankSum=1.664;SOR=1.514;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4320G>T|||||4320|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2948G>T|||||2948|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.712-161C>A||||||	GT:AD:DP:GQ:PL	0/1:27,9:37:99:170,0,813	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219707	.	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.69;MQ0=0;MQRankSum=-5.695;QD=3.76;ReadPosRankSum=2.438;SOR=0.939;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4297A>G|||||4297|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2971A>G|||||2971|,G|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.711+171T>C||||||	GT:AD:DP:GQ:PL	0/1:30,12:42:99:186,0,772	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149419_cov61	219710	.	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.53;MQ0=0;MQRankSum=-6.160;QD=3.46;ReadPosRankSum=2.257;SOR=0.728;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_224004_224408|GENE_EXON_scaffold149419_cov61_224004_224408|transcript|Soaet10008732|protein_coding||c.-4294C>T|||||4294|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149419_cov61_210309_210938|GENE_EXON_scaffold149419_cov61_210309_210938|transcript|Soaet10008730|protein_coding||c.*2974C>T|||||2974|,T|intron_variant|MODIFIER|EXON_scaffold149419_cov61_218823_218871|GENE_EXON_scaffold149419_cov61_218823_218871|transcript|Soaet10008731|protein_coding|7/10|c.711+168G>A||||||	GT:AD:DP:GQ:PL	0/1:28,13:41:99:170,0,776	scaffold149419_cov61	GLEAN	mRNA	218823	222865	1.00	-	.	ID=Soaet10008731
scaffold149432_cov61	194778	.	A	C	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.876;SOR=2.833;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_199626_199733|GENE_EXON_scaffold149432_cov61_199626_199733|transcript|Soaet10009330|protein_coding||c.-4848A>C|||||4848|,C|intron_variant|MODIFIER|EXON_scaffold149432_cov61_194111_194287|GENE_EXON_scaffold149432_cov61_194111_194287|transcript|Soaet10009329|protein_coding|2/2|c.489+454T>G||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:41:41,0,57	scaffold149432_cov61	GLEAN	mRNA	194111	196956	0.62	-	.	ID=Soaet10009329
scaffold149432_cov61	195608	.	C	T	866.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.414;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.2334;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=1;MQRankSum=2.932;QD=27.96;ReadPosRankSum=-0.347;SOR=1.014;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_199626_199733|GENE_EXON_scaffold149432_cov61_199626_199733|transcript|Soaet10009330|protein_coding||c.-4018C>T|||||4018|,T|intron_variant|MODIFIER|EXON_scaffold149432_cov61_194111_194287|GENE_EXON_scaffold149432_cov61_194111_194287|transcript|Soaet10009329|protein_coding|1/2|c.325-212G>A||||||	GT:AD:DP:GQ:PL	1/1:2,29:31:63:895,63,0	scaffold149432_cov61	GLEAN	mRNA	194111	196956	0.62	-	.	ID=Soaet10009329
scaffold149432_cov61	208754	.	G	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.597;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=0;MQRankSum=-4.909;QD=9.32;ReadPosRankSum=3.229;SOR=1.449;ANN=A|missense_variant|MODERATE|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|2/2|c.233C>T|p.Thr78Ile|233/276|233/276|78/91||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3186C>T|||||3186|	GT:AD:DP:GQ:PL	0/1:23,35:58:99:569,0,610	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208770	.	C	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DP=58;Dels=0.00;ExcessHet=3.0103;FS=6.044;HaplotypeScore=5.1571;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=0;MQRankSum=-4.957;QD=7.50;ReadPosRankSum=4.111;SOR=1.583;ANN=A|missense_variant|MODERATE|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|2/2|c.217G>T|p.Val73Leu|217/276|217/276|73/91||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3202G>T|||||3202|	GT:AD:DP:GQ:PL	0/1:27,31:58:99:463,0,796	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208780	.	G	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.151;HaplotypeScore=4.4442;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=-5.106;QD=5.86;ReadPosRankSum=3.272;SOR=1.127;ANN=T|stop_gained|HIGH|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|2/2|c.207C>A|p.Cys69*|207/276|207/276|69/91||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3212C>A|||||3212|	GT:AD:DP:GQ:PL	0/1:29,31:60:99:380,0,908	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208791	.	GC	G	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DP=60;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=52.07;MQ0=0;MQRankSum=-3.680;QD=12.79;ReadPosRankSum=2.397;SOR=1.569;ANN=G|frameshift_variant|HIGH|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|2/2|c.195delG|p.Leu65fs|195/276|195/276|65/91||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3224delG|||||3224|;LOF=(EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|1|1.00)	GT:AD:DP:GQ:PL	0/1:31,18:50:99:664,0,1231	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208798	.	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.316;HaplotypeScore=51.3217;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=-4.592;QD=6.77;ReadPosRankSum=0.818;SOR=1.059;ANN=C|synonymous_variant|LOW|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|2/2|c.189A>G|p.Glu63Glu|189/276|189/276|63/91||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3230A>G|||||3230|	GT:AD:DP:GQ:PL	0/1:31,26:57:99:414,0,934	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208802	.	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=36.6059;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=0;MQRankSum=-3.407;QD=1.82;ReadPosRankSum=0.772;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|2/2|c.185T>C|p.Val62Ala|185/276|185/276|62/91||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3234T>C|||||3234|	GT:AD:DP:GQ:PL	0/1:40,12:52:99:123,0,1173	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208803	.	C	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.521;HaplotypeScore=36.6059;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=0;MQRankSum=-1.691;QD=2.19;ReadPosRankSum=0.139;SOR=1.226;ANN=G|missense_variant|MODERATE|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|2/2|c.184G>C|p.Val62Leu|184/276|184/276|62/91||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3235G>C|||||3235|	GT:AD:DP:GQ:PL	0/1:42,10:52:99:142,0,1116	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208822	.	C	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.859;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-4.329;QD=6.47;ReadPosRankSum=-3.577;SOR=1.569;ANN=A|splice_acceptor_variant&intron_variant|HIGH|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-1G>T||||||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3254G>T|||||3254|;LOF=(EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|1|1.00)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:371,0,912	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208976	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7474;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=1;MQRankSum=-5.081;QD=0.90;ReadPosRankSum=-0.909;SOR=0.787;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3408C>T|||||3408|,A|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-155C>T||||||	GT:AD:DP:GQ:PL	0/1:44,7:51:74:74,0,1108	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	208980	.	C	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6633;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=1;MQRankSum=-5.081;QD=0.70;ReadPosRankSum=-0.448;SOR=0.787;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3412G>T|||||3412|,A|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-159G>T||||||	GT:AD:DP:GQ:PL	0/1:44,7:51:64:64,0,1117	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	209000	.	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=1;MQRankSum=-5.359;QD=1.22;ReadPosRankSum=1.060;SOR=0.880;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3432T>C|||||3432|,G|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-179T>C||||||	GT:AD:DP:GQ:PL	0/1:38,7:45:83:83,0,1044	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	209038	.	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.471;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-4.019;QD=1.63;ReadPosRankSum=1.466;SOR=0.446;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3470A>G|||||3470|,C|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-217A>G||||||	GT:AD:DP:GQ:PL	0/1:33,8:41:95:95,0,913	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	209070	.	A	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.5730;MLEAC=1;MLEAF=0.500;MQ=57.12;MQ0=0;MQRankSum=-4.972;QD=1.83;ReadPosRankSum=1.495;SOR=0.519;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3502T>C|||||3502|,G|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-249T>C||||||	GT:AD:DP:GQ:PL	0/1:29,8:37:96:96,0,837	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	209072	.	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0331;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-4.972;QD=1.83;ReadPosRankSum=1.421;SOR=0.519;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3504A>G|||||3504|,C|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-251A>G||||||	GT:AD:DP:GQ:PL	0/1:29,8:38:96:96,0,845	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	209078	.	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2847;MLEAC=1;MLEAF=0.500;MQ=57.04;MQ0=0;MQRankSum=-3.237;QD=1.97;ReadPosRankSum=0.637;SOR=0.567;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3510G>A|||||3510|,T|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.166-257G>A||||||	GT:AD:DP:GQ:PL	0/1:30,6:36:99:99,0,784	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	209105	.	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=56.60;MQ0=0;MQRankSum=-3.739;QD=1.55;ReadPosRankSum=0.669;SOR=0.719;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149432_cov61_203585_203772|GENE_EXON_scaffold149432_cov61_203585_203772|transcript|Soaet10009331|protein_coding||c.-3537G>A|||||3537|,T|intron_variant|MODIFIER|EXON_scaffold149432_cov61_208711_208821|GENE_EXON_scaffold149432_cov61_208711_208821|transcript|Soaet10009332|protein_coding|1/1|c.165+261G>A||||||	GT:AD:DP:GQ:PL	0/1:19,6:25:67:67,0,631	scaffold149432_cov61	GLEAN	mRNA	208711	209530	0.60	-	.	ID=Soaet10009332
scaffold149432_cov61	223883	.	C	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.250;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=1;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.099;SOR=0.855;ANN=T|intron_variant|MODIFIER|EXON_scaffold149432_cov61_223344_223802|GENE_EXON_scaffold149432_cov61_223344_223802|transcript|Soaet10009333|protein_coding|5/5|c.2371-81G>A||||||	GT:AD:DP:GQ:PL	0/1:25,22:47:99:567,0,740	scaffold149432_cov61	GLEAN	mRNA	223344	227873	0.99	-	.	ID=Soaet10009333
scaffold149448_cov65	68865	.	T	TGAA	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.21;RPA=1,2;RU=GAA;ReadPosRankSum=-1.515;SOR=0.892;STR;ANN=TGAA|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|2/2|c.597-58_597-57insTTC||||||	GT:AD:DP:GQ:PL	0/1:14,9:23:99:433,0,738	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	69538	.	G	A	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-1.817;SOR=0.511;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.115-29C>T||||||	GT:AD:DP:GQ:PL	0/1:15,11:26:99:286,0,337	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	70597	.	C	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.775;SOR=0.814;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.115-1088G>A||||||	GT:AD:DP:GQ:PL	0/1:9,7:16:99:178,0,265	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	70825	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.043;SOR=0.758;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.115-1316G>A||||||	GT:AD:DP:GQ:PL	0/1:9,9:18:99:208,0,223	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	71441	.	C	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-0.992;SOR=1.270;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.115-1932G>T||||||	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,144	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	71503	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.590;SOR=0.905;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.115-1994C>T||||||	GT:AD:DP:GQ:PL	0/1:9,5:14:71:71,0,158	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	71630	.	T	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.49;ReadPosRankSum=1.312;SOR=0.653;ANN=G|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.115-2121A>C||||||	GT:AD:DP:GQ:PL	0/1:7,9:16:99:180,0,208	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74166	.	A	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DP=45;Dels=0.00;ExcessHet=3.0103;FS=9.249;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=-3.034;QD=3.39;ReadPosRankSum=-2.576;SOR=2.546;ANN=G|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2247T>C||||||	GT:AD:DP:GQ:PL	0/1:37,8:45:99:181,0,1110	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74169	.	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.725;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=-1.298;QD=2.54;ReadPosRankSum=-1.718;SOR=2.316;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2244G>A||||||	GT:AD:DP:GQ:PL	0/1:39,7:46:99:145,0,1084	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74195	.	C	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=7.5789;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=0;MQRankSum=-1.451;QD=3.11;ReadPosRankSum=-1.603;SOR=1.714;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2218G>T||||||	GT:AD:DP:GQ:PL	0/1:34,9:44:99:162,0,915	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74200	.	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=-1.389;QD=2.52;ReadPosRankSum=-0.801;SOR=1.751;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2213G>A||||||	GT:AD:DP:GQ:PL	0/1:36,10:46:99:144,0,1018	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74224	.	C	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.57;MQ0=0;MQRankSum=-1.299;QD=3.34;ReadPosRankSum=1.378;SOR=1.485;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2189G>T||||||	GT:AD:DP:GQ:PL	0/1:38,12:50:99:195,0,1086	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74271	.	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=48.01;MQ0=10;MQRankSum=-2.179;QD=5.81;ReadPosRankSum=0.955;SOR=0.810;ANN=G|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2142T>C||||||	GT:AD:DP:GQ:PL	0/1:26,29:56:99:348,0,638	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74283	.	T	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.635;HaplotypeScore=4.4956;MLEAC=1;MLEAF=0.500;MQ=45.90;MQ0=11;MQRankSum=-1.566;QD=6.63;ReadPosRankSum=1.964;SOR=0.491;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2130A>G||||||	GT:AD:DP:GQ:PL	0/1:26,29:55:99:393,0,551	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74285	.	T	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4950;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=11;MQRankSum=-1.771;QD=6.17;ReadPosRankSum=1.792;SOR=0.542;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2128A>G||||||	GT:AD:DP:GQ:PL	0/1:25,27:53:99:349,0,534	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74295	.	A	T	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.059;HaplotypeScore=7.7386;MLEAC=1;MLEAF=0.500;MQ=42.13;MQ0=14;MQRankSum=1.111;QD=0.39;ReadPosRankSum=0.902;SOR=0.293;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2118T>A||||||	GT:AD:DP:GQ:PL	0/1:44,10:54:49:49,0,874	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74298	.	G	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.974;HaplotypeScore=11.6535;MLEAC=1;MLEAF=0.500;MQ=41.25;MQ0=14;MQRankSum=-1.533;QD=7.11;ReadPosRankSum=0.860;SOR=0.270;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2115C>A||||||	GT:AD:DP:GQ:PL	0/1:21,32:53:99:405,0,493	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74307	.	C	T	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.0656;MLEAC=1;MLEAF=0.500;MQ=39.85;MQ0=14;MQRankSum=-0.049;QD=0.58;ReadPosRankSum=-0.252;SOR=0.458;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2106G>A||||||	GT:AD:DP:GQ:PL	0/1:42,8:50:57:57,0,769	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74314	.	G	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.492;HaplotypeScore=4.6636;MLEAC=1;MLEAF=0.500;MQ=37.80;MQ0=15;MQRankSum=-2.554;QD=2.35;ReadPosRankSum=1.414;SOR=1.038;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2099C>G||||||	GT:AD:DP:GQ:PL	0/1:33,15:48:99:141,0,655	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74362	.	G	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=24;MQRankSum=-2.252;QD=3.49;ReadPosRankSum=-1.303;SOR=0.446;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2051C>A||||||	GT:AD:DP:GQ:PL	0/1:18,28:46:99:189,0,292	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74397	.	AG	A	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;DP=51;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=0;MQRankSum=1.139;QD=8.65;RPA=2,1;RU=G;ReadPosRankSum=-0.061;SOR=0.050;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2015delC||||||	GT:AD:DP:GQ:PL	0/1:10,5:15:99:167,0,374	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74402	.	G	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=34;MQRankSum=-2.195;QD=0.90;ReadPosRankSum=0.000;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2011C>A||||||	GT:AD:DP:GQ:PL	0/1:38,13:51:74:74,0,446	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74410	.	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=29;MQRankSum=-1.766;QD=1.13;ReadPosRankSum=0.053;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+2003A>G||||||	GT:AD:DP:GQ:PL	0/1:34,12:46:80:80,0,403	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74463	.	C	A	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7470;MLEAC=1;MLEAF=0.500;MQ=17.20;MQ0=37;MQRankSum=-0.389;QD=2.81;ReadPosRankSum=-1.434;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1950G>T||||||	GT:AD:DP:GQ:PL	0/1:19,29:48:99:163,0,138	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74470	.	A	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=17.60;MQ0=39;MQRankSum=-0.699;QD=1.94;ReadPosRankSum=-0.528;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1943T>C||||||	GT:AD:DP:GQ:PL	0/1:21,29:51:99:125,0,180	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74505	.	G	A	29.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4449;MLEAC=1;MLEAF=0.500;MQ=16.52;MQ0=41;MQRankSum=-1.030;QD=0.57;ReadPosRankSum=-0.179;SOR=0.495;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1908C>T||||||	GT:AD:DP:GQ:PL	0/1:38,14:52:58:58,0,211	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74508	.	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3692;MLEAC=1;MLEAF=0.500;MQ=16.21;MQ0=43;MQRankSum=1.383;QD=3.02;ReadPosRankSum=-0.601;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1905A>G||||||	GT:AD:DP:GQ:PL	0/1:31,7:54:99:143,0,128	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74530	.	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=19.49;MQ0=36;MQRankSum=1.279;QD=1.92;ReadPosRankSum=0.212;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1883G>A||||||	GT:AD:DP:GQ:PL	0/1:28,22:50:99:124,0,257	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74536	.	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=39;MQRankSum=1.213;QD=1.13;ReadPosRankSum=0.719;SOR=1.371;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1877C>T||||||	GT:AD:DP:GQ:PL	0/1:31,23:54:89:89,0,314	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74578	.	A	C	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=27;MQRankSum=-0.304;QD=0.51;ReadPosRankSum=1.736;SOR=1.329;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1835T>G||||||	GT:AD:DP:GQ:PL	0/1:39,2:41:49:49,0,348	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74589	.	C	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.14;MQ0=23;MQRankSum=-1.077;QD=6.92;ReadPosRankSum=0.659;SOR=0.593;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1824G>T||||||	GT:AD:DP:GQ:PL	0/1:14,28:42:99:319,0,169	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74592	.	T	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.96;MQ0=21;MQRankSum=-1.077;QD=7.87;ReadPosRankSum=0.527;SOR=0.593;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1821A>G||||||	GT:AD:DP:GQ:PL	0/1:12,28:40:99:343,0,169	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74632	.	T	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.614;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=47.98;MQ0=14;MQRankSum=-0.049;QD=14.52;ReadPosRankSum=-1.938;SOR=1.255;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1781A>T||||||	GT:AD:DP:GQ:PL	0/1:14,37:51:99:769,0,201	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74633	.	G	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=48.24;MQ0=14;MQRankSum=-0.208;QD=14.36;ReadPosRankSum=-1.271;SOR=1.008;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1780C>A||||||	GT:AD:DP:GQ:PL	0/1:15,37:52:99:775,0,211	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74646	.	T	C	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.678;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=51.55;MQ0=10;MQRankSum=-1.090;QD=6.89;ReadPosRankSum=-0.615;SOR=1.276;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1767A>G||||||	GT:AD:DP:GQ:PL	0/1:37,19:56:99:414,0,718	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74665	.	C	T	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.528;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=6;MQRankSum=-1.374;QD=7.55;ReadPosRankSum=-0.273;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1748G>A||||||	GT:AD:DP:GQ:PL	0/1:37,19:56:99:451,0,800	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74701	.	C	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-3.003;QD=7.08;ReadPosRankSum=0.761;SOR=0.851;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1712G>A||||||	GT:AD:DP:GQ:PL	0/1:37,20:57:99:432,0,928	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74713	.	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.795;HaplotypeScore=8.9141;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=1.136;QD=1.96;ReadPosRankSum=-0.823;SOR=1.863;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1700G>A||||||	GT:AD:DP:GQ:PL	0/1:50,8:58:99:142,0,1246	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74714	.	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9141;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-3.192;QD=6.55;ReadPosRankSum=1.227;SOR=0.643;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1699G>A||||||	GT:AD:DP:GQ:PL	0/1:39,19:58:99:408,0,993	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74731	.	C	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9150;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=-0.263;QD=1.56;ReadPosRankSum=0.263;SOR=0.843;ANN=G|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1682G>C||||||	GT:AD:DP:GQ:PL	0/1:46,7:53:99:111,0,1183	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74737	.	C	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.381;HaplotypeScore=7.9150;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-2.335;QD=13.11;ReadPosRankSum=-2.078;SOR=0.914;ANN=G|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1676G>C||||||	GT:AD:DP:GQ:PL	0/1:21,30:51:99:697,0,541	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74745	.	A	T	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.092;HaplotypeScore=9.9988;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-2.527;QD=12.69;ReadPosRankSum=-1.780;SOR=0.922;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1668T>A||||||	GT:AD:DP:GQ:PL	0/1:22,27:49:99:650,0,545	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74750	.	C	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.373;HaplotypeScore=9.9988;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=1.536;QD=3.08;ReadPosRankSum=-3.060;SOR=1.015;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1663G>A||||||	GT:AD:DP:GQ:PL	0/1:35,10:45:99:167,0,973	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74763	.	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=43;Dels=0.00;ExcessHet=3.0103;FS=12.919;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=0;MQRankSum=1.061;QD=1.81;ReadPosRankSum=-1.612;SOR=3.606;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1650C>T||||||	GT:AD:DP:GQ:PL	0/1:38,5:43:99:106,0,1069	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74776	.	C	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=57.15;MQ0=0;MQRankSum=-4.653;QD=5.21;ReadPosRankSum=-0.147;SOR=0.495;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1637G>T||||||	GT:AD:DP:GQ:PL	0/1:25,8:33:99:200,0,732	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74781	.	T	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.389;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=56.97;MQ0=0;MQRankSum=-5.209;QD=3.47;ReadPosRankSum=0.781;SOR=1.170;ANN=G|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1632A>C||||||	GT:AD:DP:GQ:PL	0/1:23,6:31:99:129,0,623	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74782	.	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.228;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.86;MQ0=0;MQRankSum=-5.306;QD=3.26;ReadPosRankSum=0.804;SOR=1.199;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1631G>A||||||	GT:AD:DP:GQ:PL	0/1:24,6:30:99:126,0,667	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74787	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.295;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=-5.110;QD=3.67;ReadPosRankSum=0.365;SOR=1.190;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1626C>T||||||	GT:AD:DP:GQ:PL	0/1:22,6:28:99:131,0,625	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74846	.	A	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQ0=0;MQRankSum=-5.403;QD=1.54;ReadPosRankSum=0.475;SOR=0.495;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1567T>A||||||	GT:AD:DP:GQ:PL	0/1:25,6:31:76:76,0,771	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74868	.	C	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-5.579;QD=2.51;ReadPosRankSum=0.815;SOR=0.776;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1545G>T||||||	GT:AD:DP:GQ:PL	0/1:26,7:33:99:111,0,731	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74869	.	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-5.579;QD=2.84;ReadPosRankSum=0.837;SOR=0.776;ANN=C|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1544A>G||||||	GT:AD:DP:GQ:PL	0/1:26,7:33:99:122,0,727	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74877	.	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.50;MQ0=0;MQRankSum=-5.846;QD=2.49;ReadPosRankSum=1.060;SOR=0.723;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1536G>A||||||	GT:AD:DP:GQ:PL	0/1:29,7:36:99:118,0,808	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74887	.	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.633;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=0;MQRankSum=-6.076;QD=2.20;ReadPosRankSum=-0.167;SOR=1.299;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1526G>A||||||	GT:AD:DP:GQ:PL	0/1:30,9:39:99:114,0,829	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74958	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=2;MQRankSum=-5.853;QD=0.29;ReadPosRankSum=1.382;SOR=1.219;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1455G>A||||||	GT:AD:DP:GQ:PL	0/1:30,8:38:39:39,0,934	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	74963	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=2;MQRankSum=-5.853;QD=0.29;ReadPosRankSum=1.022;SOR=1.269;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1450G>A||||||	GT:AD:DP:GQ:PL	0/1:30,8:38:39:39,0,930	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	75318	.	C	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.269;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-2.058;SOR=1.828;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1095G>A||||||	GT:AD:DP:GQ:PL	0/1:11,9:20:99:278,0,288	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	75344	.	A	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.668;SOR=0.412;ANN=T|intron_variant|MODIFIER|EXON_scaffold149448_cov65_68574_68808|GENE_EXON_scaffold149448_cov65_68574_68808|transcript|Soaet10009278|protein_coding|1/2|c.114+1069T>A||||||	GT:AD:DP:GQ:PL	0/1:10,8:18:99:239,0,263	scaffold149448_cov65	GLEAN	mRNA	68574	76526	0.96	-	.	ID=Soaet10009278
scaffold149448_cov65	253287	.	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.261;SOR=1.371;ANN=T|missense_variant|MODERATE|EXON_scaffold149448_cov65_253246_253675|GENE_EXON_scaffold149448_cov65_253246_253675|transcript|Soaet10009280|protein_coding|3/3|c.478G>A|p.Gly160Arg|478/519|478/519|160/172||	GT:AD:DP:GQ:PL	0/1:11,4:15:99:124,0,333	scaffold149448_cov65	GLEAN	mRNA	253246	254017	0.96	-	.	ID=Soaet10009280
scaffold149448_cov65	253409	.	T	TG	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;DP=27;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=0.934;QD=17.14;RPA=3,4;RU=G;ReadPosRankSum=-0.312;SOR=0.223;STR;ANN=TG|frameshift_variant|HIGH|EXON_scaffold149448_cov65_253246_253675|GENE_EXON_scaffold149448_cov65_253246_253675|transcript|Soaet10009280|protein_coding|3/3|c.355dupC|p.His119fs|355/519|355/519|119/172||;LOF=(EXON_scaffold149448_cov65_253246_253675|GENE_EXON_scaffold149448_cov65_253246_253675|1|1.00)	GT:AD:DP:GQ:PL	0/1:11,15:27:99:483,0,356	scaffold149448_cov65	GLEAN	mRNA	253246	254017	0.96	-	.	ID=Soaet10009280
scaffold149448_cov65	253422	.	C	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.687;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=0.934;QD=10.91;ReadPosRankSum=0.624;SOR=0.223;ANN=G|missense_variant|MODERATE|EXON_scaffold149448_cov65_253246_253675|GENE_EXON_scaffold149448_cov65_253246_253675|transcript|Soaet10009280|protein_coding|3/3|c.343G>C|p.Ala115Pro|343/519|343/519|115/172||	GT:AD:DP:GQ:PL	0/1:11,15:26:99:312,0,344	scaffold149448_cov65	GLEAN	mRNA	253246	254017	0.96	-	.	ID=Soaet10009280
scaffold149448_cov65	253887	.	G	A	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.883;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-0.991;SOR=0.577;ANN=A|intron_variant|MODIFIER|EXON_scaffold149448_cov65_253246_253675|GENE_EXON_scaffold149448_cov65_253246_253675|transcript|Soaet10009280|protein_coding|1/2|c.51-63C>T||||||	GT:AD:DP:GQ:PL	0/1:17,20:37:99:631,0,464	scaffold149448_cov65	GLEAN	mRNA	253246	254017	0.96	-	.	ID=Soaet10009280
scaffold149448_cov65	262509	.	G	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.71;ReadPosRankSum=-0.794;SOR=0.551;ANN=A|missense_variant|MODERATE|EXON_scaffold149448_cov65_262236_262850|GENE_EXON_scaffold149448_cov65_262236_262850|transcript|Soaet10009282|protein_coding|1/1|c.274G>A|p.Ala92Thr|274/615|274/615|92/204||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|upstream_gene_variant|MODIFIER|EXON_scaffold149448_cov65_263534_263734|GENE_EXON_scaffold149448_cov65_263534_263734|transcript|Soaet10009283|protein_coding||c.-1025G>A|||||1025|	GT:AD:DP:GQ:PL	0/1:11,14:25:99:371,0,271	scaffold149448_cov65	GLEAN	mRNA	262236	262850	0.66	+	.	ID=Soaet10009282
scaffold149468_cov63	5015	.	C	T	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.418;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.072;SOR=1.033;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.344C>T|p.Ser115Phe|344/9444|344/9444|115/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,16:33:99:397,0,444	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5052	.	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DP=28;Dels=0.00;ExcessHet=3.0103;FS=8.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.92;ReadPosRankSum=-0.918;SOR=0.736;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.381G>A|p.Ala127Ala|381/9444|381/9444|127/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,17:28:99:418,0,282	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5189	.	GT	G	265.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.53;RPA=8,7;RU=T;SOR=0.892;STR;ANN=G|frameshift_variant|HIGH|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.526delT|p.Tyr176fs|526/9444|526/9444|176/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,9:11:27:303,27,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5224	.	G	A	356.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.43;SOR=1.270;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.553G>A|p.Glu185Lys|553/9444|553/9444|185/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,11:11:27:385,27,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5232	.	G	A	323.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.85;ReadPosRankSum=0.267;SOR=0.368;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.561G>A|p.Ser187Ser|561/9444|561/9444|187/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,12:13:12:351,0,12	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5287	.	G	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.008;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.93;ReadPosRankSum=-0.188;SOR=0.105;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.616G>A|p.Gly206Arg|616/9444|616/9444|206/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,12:18:99:333,0,172	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5363	.	A	G	884.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.60;SOR=0.997;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.692A>G|p.Asp231Gly|692/9444|692/9444|231/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:66:913,66,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5798	.	T	G	937.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.25;SOR=0.892;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.1127T>G|p.Ile376Arg|1127/9444|1127/9444|376/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:69:966,69,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5815	.	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.44;ReadPosRankSum=0.124;SOR=0.777;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.1144C>T|p.Leu382Leu|1144/9444|1144/9444|382/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:11,20:31:99:631,0,259	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	5929	.	C	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.810;SOR=0.922;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.1258C>T|p.Arg420Cys|1258/9444|1258/9444|420/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,7:26:99:191,0,539	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	6033	.	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.278;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-1.598;SOR=0.943;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.1362G>A|p.Ala454Ala|1362/9444|1362/9444|454/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,26:41:99:707,0,408	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	6196	.	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=1;MQRankSum=0.918;QD=11.37;ReadPosRankSum=0.178;SOR=0.760;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.1525G>A|p.Val509Ile|1525/9444|1525/9444|509/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,19:45:99:540,0,656	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	6228	.	G	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9158;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=0.910;QD=10.72;ReadPosRankSum=-0.643;SOR=0.960;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.1557G>T|p.Leu519Phe|1557/9444|1557/9444|519/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,17:40:99:457,0,652	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	6647	.	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.91;ReadPosRankSum=2.726;SOR=0.527;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.1976G>A|p.Ser659Asn|1976/9444|1976/9444|659/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,6:14:99:105,0,216	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7122	.	A	G	552.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.71;SOR=0.914;ANN=G|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.2451A>G|p.Ser817Ser|2451/9444|2451/9444|817/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,18:18:42:581,42,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7273	.	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.34;SOR=0.914;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.2602G>A|p.Gly868Arg|2602/9444|2602/9444|868/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:75:1029,75,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7295	.	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;DP=33;Dels=0.00;ExcessHet=3.0103;FS=8.384;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.63;ReadPosRankSum=1.011;SOR=0.615;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.2624C>T|p.Pro875Leu|2624/9444|2624/9444|875/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:412,0,375	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7424	.	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-0.252;SOR=0.665;ANN=A|stop_retained_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.2753G>A|p.Ter918Ter|2753/9444|2753/9444|918/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:13,17:30:99:454,0,350	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7518	.	T	C	1464.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.29;SOR=0.990;ANN=C|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.2847T>C|p.Val949Val|2847/9444|2847/9444|949/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1493,108,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7547	.	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=33.08;SOR=0.919;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.2876A>G|p.Glu959Gly|2876/9444|2876/9444|959/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1583,114,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7847	.	C	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.482;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.248;SOR=1.546;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3176C>T|p.Ala1059Val|3176/9444|3176/9444|1059/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,18:47:99:486,0,822	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	7940	.	C	T	838.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.027;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.96;ReadPosRankSum=-1.789;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3269C>T|p.Thr1090Ile|3269/9444|3269/9444|1090/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,28:30:27:867,27,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8045	.	G	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.108;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.20;ReadPosRankSum=-0.191;SOR=1.233;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3374G>A|p.Arg1125Lys|3374/9444|3374/9444|1125/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:511,0,392	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8074	.	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.229;SOR=0.665;ANN=T|stop_gained|HIGH|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3403C>T|p.Arg1135*|3403/9444|3403/9444|1135/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:14,16:30:99:467,0,398	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8176	.	A	C	995.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.12;SOR=0.818;ANN=C|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3505A>C|p.Arg1169Arg|3505/9444|3505/9444|1169/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1024,75,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8374	.	C	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.87;ReadPosRankSum=1.381;SOR=0.610;ANN=T|stop_gained|HIGH|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3703C>T|p.Gln1235*|3703/9444|3703/9444|1235/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,18:39:99:452,0,683	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8443	.	C	A	1181.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.94;SOR=0.984;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3772C>A|p.Leu1258Met|3772/9444|3772/9444|1258/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1210,90,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8649	.	G	A	982.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.07;SOR=0.836;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.3978G>A|p.Leu1326Leu|3978/9444|3978/9444|1326/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,28:28:72:1011,72,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8803	.	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=32.91;SOR=0.984;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4132A>G|p.Lys1378Glu|4132/9444|4132/9444|1378/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1246,90,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	8929	.	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.22;SOR=0.869;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4258A>G|p.Arg1420Gly|4258/9444|4258/9444|1420/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1226,87,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9124	.	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.80;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4453C>T|p.Arg1485Cys|4453/9444|4453/9444|1485/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:75:1045,75,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9150	.	A	G	934.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.16;SOR=0.976;ANN=G|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4479A>G|p.Leu1493Leu|4479/9444|4479/9444|1493/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:963,69,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9215	.	T	C	978.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=1;QD=32.63;SOR=0.906;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4544T>C|p.Ile1515Thr|4544/9444|4544/9444|1515/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:72:1007,72,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9378	.	C	G	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.27;MQ0=1;MQRankSum=-4.914;QD=0.38;ReadPosRankSum=-1.533;SOR=0.859;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4707C>G|p.Asp1569Glu|4707/9444|4707/9444|1569/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,6:34:41:41,0,888	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9406	.	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=1;QD=30.42;SOR=0.743;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4735T>C|p.Tyr1579His|4735/9444|4735/9444|1579/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1245,90,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9416	.	G	A	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4084;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=1;MQRankSum=-5.693;QD=0.46;ReadPosRankSum=0.710;SOR=0.484;ANN=A|stop_gained|HIGH|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4745G>A|p.Trp1582*|4745/9444|4745/9444|1582/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,9:41:47:47,0,998	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9424	.	A	C	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5767;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=1;MQRankSum=-5.693;QD=0.46;ReadPosRankSum=1.048;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4753A>C|p.Lys1585Gln|4753/9444|4753/9444|1585/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,9:41:47:47,0,1006	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9428	.	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5767;MLEAC=1;MLEAF=0.500;MQ=55.33;MQ0=1;MQRankSum=-5.534;QD=0.79;ReadPosRankSum=1.039;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4757C>A|p.Ser1586Tyr|4757/9444|4757/9444|1586/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,9:39:59:59,0,842	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9429	.	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=55.33;MQ0=1;MQRankSum=-5.534;QD=0.79;ReadPosRankSum=1.021;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4758C>A|p.Ser1586Ser|4758/9444|4758/9444|1586/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,9:39:59:59,0,834	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9453	.	T	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6608;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=1;MQRankSum=-5.286;QD=0.94;ReadPosRankSum=0.059;SOR=0.507;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4782T>G|p.Asp1594Glu|4782/9444|4782/9444|1594/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,9:37:62:62,0,801	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9459	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5767;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=1;MQRankSum=-5.370;QD=0.91;ReadPosRankSum=-0.247;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4788G>A|p.Gln1596Gln|4788/9444|4788/9444|1596/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,9:37:62:62,0,808	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9484	.	G	A	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.3117;MLEAC=1;MLEAF=0.500;MQ=55.85;MQ0=1;MQRankSum=-5.566;QD=0.62;ReadPosRankSum=0.293;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4813G>A|p.Val1605Ile|4813/9444|4813/9444|1605/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,8:40:53:53,0,901	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9488	.	G	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.1477;MLEAC=1;MLEAF=0.500;MQ=56.51;MQ0=1;MQRankSum=2.149;QD=10.20;ReadPosRankSum=0.103;SOR=0.712;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4817G>A|p.Arg1606His|4817/9444|4817/9444|1606/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,17:40:99:426,0,488	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9494	.	G	A	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.762;HaplotypeScore=15.9794;MLEAC=1;MLEAF=0.500;MQ=56.32;MQ0=1;MQRankSum=-5.338;QD=0.42;ReadPosRankSum=-0.247;SOR=1.241;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4823G>A|p.Arg1608His|4823/9444|4823/9444|1608/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,7:38:44:44,0,830	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9543	.	C	T	793.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.75;SOR=0.941;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.4872C>T|p.Phe1624Phe|4872/9444|4872/9444|1624/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,25:25:60:822,60,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9671	.	G	A	664.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.99;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5000G>A|p.Arg1667Lys|5000/9444|5000/9444|1667/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:693,51,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	9709	.	T	C	674.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.00;SOR=0.793;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5038T>C|p.Cys1680Arg|5038/9444|5038/9444|1680/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:51:703,51,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10066	.	C	G	1401.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.60;SOR=1.455;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5395C>G|p.Leu1799Val|5395/9444|5395/9444|1799/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,43:45:99:1430,105,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10097	.	G	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-1.354;SOR=0.601;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5426G>A|p.Gly1809Glu|5426/9444|5426/9444|1809/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,11:41:99:329,0,779	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10098	.	A	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-1.369;SOR=0.601;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5427A>T|p.Gly1809Gly|5427/9444|5427/9444|1809/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,11:41:99:329,0,778	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10165	.	C	T	1408.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.31;SOR=0.829;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5494C>T|p.Leu1832Leu|5494/9444|5494/9444|1832/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1437,102,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10243	.	G	A	1340.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3286;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=1;MQRankSum=-0.174;QD=27.93;ReadPosRankSum=1.586;SOR=0.527;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5572G>A|p.Val1858Ile|5572/9444|5572/9444|1858/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,47:49:99:1369,99,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10374	.	G	A	903.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.13;SOR=1.143;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5703G>A|p.Arg1901Arg|5703/9444|5703/9444|1901/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:932,69,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10459	.	G	GA	1174.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.55;RPA=5,6;RU=A;SOR=1.085;STR;ANN=GA|frameshift_variant|HIGH|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5793dupA|p.Ala1932fs|5794/9444|5794/9444|1932/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS&INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,34:35:99:1212,102,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10527	.	G	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=-0.624;QD=8.37;ReadPosRankSum=1.030;SOR=0.765;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5856G>A|p.Gln1952Gln|5856/9444|5856/9444|1952/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:31,14:45:99:405,0,934	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10601	.	T	C	1378.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=34.47;SOR=0.902;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.5930T>C|p.Phe1977Ser|5930/9444|5930/9444|1977/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1407,102,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10681	.	G	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.449;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-1.033;SOR=1.196;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6010G>T|p.Asp2004Tyr|6010/9444|6010/9444|2004/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:457,0,544	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10729	.	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.28;SOR=0.798;ANN=C|stop_lost|HIGH|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6058T>C|p.Ter2020Glnext*?|6058/9444|6058/9444|2020/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1255,90,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10768	.	A	G	1438.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.02;SOR=1.022;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6097A>G|p.Lys2033Glu|6097/9444|6097/9444|2033/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1467,108,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	10982	.	A	G	1834.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.76;SOR=1.302;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6311A>G|p.Lys2104Arg|6311/9444|6311/9444|2104/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1863,135,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	11090	.	C	G	1482.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.95;SOR=0.829;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6419C>G|p.Ser2140Cys|6419/9444|6419/9444|2140/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1511,111,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	11157	.	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.22;SOR=0.804;ANN=C|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6486T>C|p.Asp2162Asp|6486/9444|6486/9444|2162/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1224,90,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	11202	.	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.78;SOR=0.811;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6531C>T|p.Cys2177Cys|6531/9444|6531/9444|2177/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1253,90,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	11407	.	G	T	1307.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.14;SOR=0.788;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.6736G>T|p.Asp2246Tyr|6736/9444|6736/9444|2246/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1336,96,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	11694	.	A	T	871.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.06;SOR=0.760;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7023A>T|p.Lys2341Asn|7023/9444|7023/9444|2341/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:66:900,66,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	11886	.	C	G	1014.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SOR=0.880;ANN=G|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7215C>G|p.Ser2405Ser|7215/9444|7215/9444|2405/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1043,75,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	11991	.	G	T	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.18;ReadPosRankSum=0.486;SOR=0.804;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7320G>T|p.Glu2440Asp|7320/9444|7320/9444|2440/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,18:37:99:442,0,467	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12103	.	A	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.26;ReadPosRankSum=-0.785;SOR=0.608;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7432A>G|p.Ile2478Val|7432/9444|7432/9444|2478/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,14:22:99:364,0,202	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12171	.	A	G	438.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.35;ReadPosRankSum=0.869;SOR=0.551;ANN=G|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7500A>G|p.Ala2500Ala|7500/9444|7500/9444|2500/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,17:18:1:464,0,1	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12218	.	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.053;SOR=0.850;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7547G>A|p.Gly2516Glu|7547/9444|7547/9444|2516/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,5:17:99:116,0,338	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12273	.	A	G	352.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.40;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7602A>G|p.Leu2534Leu|7602/9444|7602/9444|2534/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,12:12:27:381,27,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12295	.	A	G	361.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.83;SOR=0.836;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7624A>G|p.Asn2542Asp|7624/9444|7624/9444|2542/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,13:13:27:390,27,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12326	.	T	C	324.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7655T>C|p.Met2552Thr|7655/9444|7655/9444|2552/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,14:14:24:353,24,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12623	.	T	C	585.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.83;SOR=0.793;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7952T>C|p.Leu2651Pro|7952/9444|7952/9444|2651/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:45:614,45,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12643	.	T	C	549.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.94;SOR=0.793;ANN=C|stop_lost|HIGH|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7972T>C|p.Ter2658Glnext*?|7972/9444|7972/9444|2658/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,19:19:42:578,42,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12670	.	T	C	595.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.7999T>C|p.Cys2667Arg|7999/9444|7999/9444|2667/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:45:624,45,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12942	.	G	A	1112.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;SOR=0.941;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8271G>A|p.Glu2757Glu|8271/9444|8271/9444|2757/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1141,84,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	12967	.	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.22;SOR=0.743;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8296A>G|p.Asn2766Asp|8296/9444|8296/9444|2766/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,39:39:90:1246,90,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13029	.	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SOR=1.022;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8358C>T|p.Phe2786Phe|8358/9444|8358/9444|2786/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1043,75,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13030	.	G	A	1038.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.48;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8359G>A|p.Glu2787Lys|8359/9444|8359/9444|2787/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1067,75,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13196	.	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.311;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-0.281;SOR=0.644;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8525G>A|p.Ser2842Asn|8525/9444|8525/9444|2842/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:480,0,547	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13482	.	A	T	1091.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.33;SOR=0.927;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8811A>T|p.Ile2937Ile|8811/9444|8811/9444|2937/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1120,81,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13544	.	T	G	1244.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=31.12;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8873T>G|p.Ile2958Ser|8873/9444|8873/9444|2958/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,40:40:93:1273,93,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13553	.	A	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DP=41;Dels=0.00;ExcessHet=3.0103;FS=9.551;HaplotypeScore=6.4944;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=0.810;QD=10.09;ReadPosRankSum=0.244;SOR=1.330;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.8882A>C|p.Tyr2961Ser|8882/9444|8882/9444|2961/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,15:41:99:442,0,712	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13706	.	A	C	1053.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.93;SOR=0.880;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.9035A>C|p.Asp3012Ala|9035/9444|9035/9444|3012/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1082,78,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13762	.	G	A	969.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.39;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.9091G>A|p.Val3031Met|9091/9444|9091/9444|3031/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:33:75:998,75,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13775	.	C	T	962.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.09;SOR=0.957;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.9104C>T|p.Thr3035Ile|9104/9444|9104/9444|3035/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,32:32:72:991,72,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13904	.	A	T	626.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.34;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.9233A>T|p.Tyr3078Phe|9233/9444|9233/9444|3078/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,20:20:48:655,48,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	13979	.	A	T	945.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.53;SOR=0.826;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.9308A>T|p.Asp3103Val|9308/9444|9308/9444|3103/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,30:30:69:974,69,0	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	14096	.	A	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.10;ReadPosRankSum=-0.665;SOR=1.546;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_4672_14115|GENE_EXON_scaffold149468_cov63_4672_14115|transcript|Soaet10008938|protein_coding|1/1|c.9425A>G|p.Asp3142Gly|9425/9444|9425/9444|3142/3147||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:9,19:28:99:535,0,274	scaffold149468_cov63	GLEAN	mRNA	4672	14115	0.97	+	.	ID=Soaet10008938
scaffold149468_cov63	114629	.	C	T	928.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.40;SOR=1.302;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_113990_114472|GENE_EXON_scaffold149468_cov63_113990_114472|transcript|Soaet10008941|protein_coding|2/3|c.525C>T|p.Phe175Phe|525/1155|525/1155|175/384||	GT:AD:DP:GQ:PL	1/1:0,27:27:69:957,69,0	scaffold149468_cov63	GLEAN	mRNA	113990	115464	1.00	+	.	ID=Soaet10008941
scaffold149468_cov63	115149	.	C	CTT	1169.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.71;RPA=2,4;RU=T;SOR=1.519;STR;ANN=CTT|intron_variant|MODIFIER|EXON_scaffold149468_cov63_113990_114472|GENE_EXON_scaffold149468_cov63_113990_114472|transcript|Soaet10008941|protein_coding|2/2|c.859-19_859-18insTT||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1207,72,0	scaffold149468_cov63	GLEAN	mRNA	113990	115464	1.00	+	.	ID=Soaet10008941
scaffold149468_cov63	121154	.	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.80;SOR=0.804;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding|1/1|c.37A>G|p.Thr13Ala|37/198|37/198|13/65||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.*2332T>C|||||2332|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.*2886T>C|||||2886|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*3297T>C|||||3297|	GT:AD:DP:GQ:PL	1/1:0,36:36:84:1137,84,0	scaffold149468_cov63	GLEAN	mRNA	121118	121315	0.97	+	.	ID=Soaet10008944
scaffold149468_cov63	121225	.	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.365;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-1.157;SOR=1.403;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding|1/1|c.108G>A|p.Gln36Gln|108/198|108/198|36/65||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.*2261C>T|||||2261|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.*2815C>T|||||2815|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*3226C>T|||||3226|	GT:AD:DP:GQ:PL	0/1:19,12:32:99:342,0,586	scaffold149468_cov63	GLEAN	mRNA	121118	121315	0.97	+	.	ID=Soaet10008944
scaffold149468_cov63	121254	.	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.87;SOR=0.756;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding|1/1|c.137A>G|p.Asn46Ser|137/198|137/198|46/65||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.*2232T>C|||||2232|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.*2786T>C|||||2786|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*3197T>C|||||3197|	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1232,90,0	scaffold149468_cov63	GLEAN	mRNA	121118	121315	0.97	+	.	ID=Soaet10008944
scaffold149468_cov63	121264	.	C	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.675;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-3.178;SOR=0.615;ANN=T|synonymous_variant|LOW|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding|1/1|c.147C>T|p.Tyr49Tyr|147/198|147/198|49/65||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.*2222G>A|||||2222|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.*2776G>A|||||2776|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*3187G>A|||||3187|	GT:AD:DP:GQ:PL	0/1:28,15:43:99:290,0,963	scaffold149468_cov63	GLEAN	mRNA	121118	121315	0.97	+	.	ID=Soaet10008944
scaffold149468_cov63	121290	.	C	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.088;SOR=0.627;ANN=A|stop_gained|HIGH|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding|1/1|c.173C>A|p.Ser58*|173/198|173/198|58/65||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.*2196G>T|||||2196|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.*2750G>T|||||2750|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*3161G>T|||||3161|	GT:AD:DP:GQ:PL	0/1:27,8:35:99:131,0,898	scaffold149468_cov63	GLEAN	mRNA	121118	121315	0.97	+	.	ID=Soaet10008944
scaffold149468_cov63	121295	.	T	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.559;SOR=0.941;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding|1/1|c.178T>A|p.Leu60Met|178/198|178/198|60/65||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.*2191A>T|||||2191|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.*2745A>T|||||2745|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*3156A>T|||||3156|	GT:AD:DP:GQ:PL	0/1:28,7:35:99:120,0,947	scaffold149468_cov63	GLEAN	mRNA	121118	121315	0.97	+	.	ID=Soaet10008944
scaffold149468_cov63	123777	.	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-2.442;SOR=0.446;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding|1/1|c.69C>T|p.Leu23Leu|69/360|69/360|23/119||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding||c.*2462G>A|||||2462|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.*263C>T|||||263|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*674C>T|||||674|	GT:AD:DP:GQ:PL	0/1:12,10:22:99:252,0,376	scaffold149468_cov63	GLEAN	mRNA	123486	123845	0.71	-	.	ID=Soaet10008945
scaffold149468_cov63	124041	.	T	C	992.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.02;SOR=1.214;ANN=C|stop_lost&splice_region_variant|HIGH|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding|2/2|c.308A>G|p.Ter103Trpext*?|308/309|308/309|103/102||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.-196A>G|||||196|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding||c.*2726T>C|||||2726|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*410A>G|||||410|	GT:AD:DP:GQ:PL	1/1:0,31:31:72:1021,72,0	scaffold149468_cov63	GLEAN	mRNA	124040	124392	0.31	-	.	ID=Soaet10008946
scaffold149468_cov63	124081	.	C	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.39;ReadPosRankSum=-0.823;SOR=0.425;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding|2/2|c.268G>T|p.Asp90Tyr|268/309|268/309|90/102||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.-236G>T|||||236|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding||c.*2766C>A|||||2766|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding||c.*370G>T|||||370|	GT:AD:DP:GQ:PL	0/1:14,11:25:99:388,0,383	scaffold149468_cov63	GLEAN	mRNA	124040	124392	0.31	-	.	ID=Soaet10008946
scaffold149468_cov63	124516	.	G	C	93.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding|1/1|c.121C>G|p.Leu41Val|121/186|121/186|41/61||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.-671C>G|||||671|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.-124C>G|||||124|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding||c.*3201G>C|||||3201|	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0	scaffold149468_cov63	GLEAN	mRNA	124451	124636	0.56	-	.	ID=Soaet10008947
scaffold149468_cov63	124584	.	A	G	52.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_124451_124636|GENE_EXON_scaffold149468_cov63_124451_124636|transcript|Soaet10008947|protein_coding|1/1|c.53T>C|p.Val18Ala|53/186|53/186|18/61||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_123486_123845|GENE_EXON_scaffold149468_cov63_123486_123845|transcript|Soaet10008945|protein_coding||c.-739T>C|||||739|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_124040_124197|GENE_EXON_scaffold149468_cov63_124040_124197|transcript|Soaet10008946|protein_coding||c.-192T>C|||||192|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_121118_121315|GENE_EXON_scaffold149468_cov63_121118_121315|transcript|Soaet10008944|protein_coding||c.*3269A>G|||||3269|	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0	scaffold149468_cov63	GLEAN	mRNA	124451	124636	0.56	-	.	ID=Soaet10008947
scaffold149468_cov63	178453	.	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-0.284;SOR=0.705;ANN=T|splice_region_variant&stop_retained_variant|LOW|EXON_scaffold149468_cov63_178452_178787|GENE_EXON_scaffold149468_cov63_178452_178787|transcript|Soaet10008949|protein_coding|1/1|c.335G>A|p.Ter112Ter|335/336|335/336|112/111||	GT:AD:DP:GQ:PL	0/1:32,17:49:99:505,0,1002	scaffold149468_cov63	GLEAN	mRNA	178452	178787	0.97	-	.	ID=Soaet10008949
scaffold149468_cov63	178544	.	C	T	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.60;ReadPosRankSum=-0.933;SOR=0.466;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_178452_178787|GENE_EXON_scaffold149468_cov63_178452_178787|transcript|Soaet10008949|protein_coding|1/1|c.244G>A|p.Asp82Asn|244/336|244/336|82/111||	GT:AD:DP:GQ:PL	0/1:17,33:51:99:1008,0,469	scaffold149468_cov63	GLEAN	mRNA	178452	178787	0.97	-	.	ID=Soaet10008949
scaffold149468_cov63	178562	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.149;SOR=0.573;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_178452_178787|GENE_EXON_scaffold149468_cov63_178452_178787|transcript|Soaet10008949|protein_coding|1/1|c.226G>A|p.Glu76Lys|226/336|226/336|76/111||	GT:AD:DP:GQ:PL	0/1:50,9:59:99:154,0,1564	scaffold149468_cov63	GLEAN	mRNA	178452	178787	0.97	-	.	ID=Soaet10008949
scaffold149468_cov63	178575	.	A	G	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.052;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-1.876;SOR=1.136;ANN=G|synonymous_variant|LOW|EXON_scaffold149468_cov63_178452_178787|GENE_EXON_scaffold149468_cov63_178452_178787|transcript|Soaet10008949|protein_coding|1/1|c.213T>C|p.Leu71Leu|213/336|213/336|71/111||	GT:AD:DP:GQ:PL	0/1:38,23:61:99:642,0,1170	scaffold149468_cov63	GLEAN	mRNA	178452	178787	0.97	-	.	ID=Soaet10008949
scaffold149468_cov63	178590	.	T	C	2049.77	.	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.60;SOR=1.022;ANN=C|synonymous_variant|LOW|EXON_scaffold149468_cov63_178452_178787|GENE_EXON_scaffold149468_cov63_178452_178787|transcript|Soaet10008949|protein_coding|1/1|c.198A>G|p.Leu66Leu|198/336|198/336|66/111||	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2078,150,0	scaffold149468_cov63	GLEAN	mRNA	178452	178787	0.97	-	.	ID=Soaet10008949
scaffold149468_cov63	178681	.	TG	T	1327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DP=70;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.82;RPA=4,3;RU=G;ReadPosRankSum=0.742;SOR=0.974;STR;ANN=T|frameshift_variant|HIGH|EXON_scaffold149468_cov63_178452_178787|GENE_EXON_scaffold149468_cov63_178452_178787|transcript|Soaet10008949|protein_coding|1/1|c.106delC|p.His36fs|106/336|106/336|36/111||;LOF=(EXON_scaffold149468_cov63_178452_178787|GENE_EXON_scaffold149468_cov63_178452_178787|1|1.00)	GT:AD:DP:GQ:PL	0/1:27,40:70:99:1365,0,862	scaffold149468_cov63	GLEAN	mRNA	178452	178787	0.97	-	.	ID=Soaet10008949
scaffold149468_cov63	212350	.	A	G	668.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.87;SOR=0.859;ANN=G|stop_lost&splice_region_variant|HIGH|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding|1/1|c.265T>C|p.Ter89Argext*?|265/267|265/267|89/88||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding||c.-2359A>G|||||2359|	GT:AD:DP:GQ:PL	1/1:0,24:24:51:697,51,0	scaffold149468_cov63	GLEAN	mRNA	212348	212614	0.97	-	.	ID=Soaet10008950
scaffold149468_cov63	212437	.	A	G	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.14;ReadPosRankSum=-0.309;SOR=0.527;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding|1/1|c.178T>C|p.Ser60Pro|178/267|178/267|60/88||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding||c.-2272A>G|||||2272|	GT:AD:DP:GQ:PL	0/1:9,18:27:99:491,0,238	scaffold149468_cov63	GLEAN	mRNA	212348	212614	0.97	-	.	ID=Soaet10008950
scaffold149468_cov63	212581	.	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.41;SOR=1.347;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding|1/1|c.34A>G|p.Lys12Glu|34/267|34/267|12/88||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding||c.-2128T>C|||||2128|	GT:AD:DP:GQ:PL	1/1:0,41:42:87:1234,87,0	scaffold149468_cov63	GLEAN	mRNA	212348	212614	0.97	-	.	ID=Soaet10008950
scaffold149468_cov63	214717	.	G	A	855.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.53;SOR=1.329;ANN=A|missense_variant|MODERATE|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|1/3|c.9G>A|p.Met3Ile|9/657|9/657|3/218||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2103C>T|||||2103|	GT:AD:DP:GQ:PL	1/1:0,30:30:63:884,63,0	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149468_cov63	215030	.	T	C	798.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=28.53;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|1/3|c.322T>C|p.Ser108Pro|322/657|322/657|108/218||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2416A>G|||||2416|	GT:AD:DP:GQ:PL	1/1:0,28:28:60:827,60,0	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149468_cov63	215312	.	G	A	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-1.779;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2698C>T|||||2698|,A|intron_variant|MODIFIER|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|1/2|c.418-33G>A||||||	GT:AD:DP:GQ:PL	0/1:16,18:34:99:482,0,430	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149468_cov63	215490	.	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.53;ReadPosRankSum=-0.942;SOR=1.617;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|3/3|c.545C>T|p.Thr182Ile|545/657|545/657|182/218||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2876G>A|||||2876|	GT:AD:DP:GQ:PL	0/1:8,20:28:99:631,0,181	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149468_cov63	215494	.	A	G	883.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;SOR=1.528;ANN=G|synonymous_variant|LOW|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|3/3|c.549A>G|p.Arg183Arg|549/657|549/657|183/218||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2880T>C|||||2880|	GT:AD:DP:GQ:PL	1/1:0,27:27:66:912,66,0	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149468_cov63	215530	.	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.78;ReadPosRankSum=0.076;SOR=0.392;ANN=A|synonymous_variant|LOW|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|3/3|c.585G>A|p.Ala195Ala|585/657|585/657|195/218||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2916C>T|||||2916|	GT:AD:DP:GQ:PL	0/1:20,8:28:99:190,0,607	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149468_cov63	215549	.	A	G	909.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SOR=0.760;ANN=G|missense_variant|MODERATE|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|3/3|c.604A>G|p.Thr202Ala|604/657|604/657|202/218||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2935T>C|||||2935|	GT:AD:DP:GQ:PL	1/1:0,29:29:66:938,66,0	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149468_cov63	215571	.	C	T	887.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149468_cov63_214709_215125|GENE_EXON_scaffold149468_cov63_214709_215125|transcript|Soaet10008951|protein_coding|3/3|c.626C>T|p.Ala209Val|626/657|626/657|209/218||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149468_cov63_212348_212614|GENE_EXON_scaffold149468_cov63_212348_212614|transcript|Soaet10008950|protein_coding||c.-2957G>A|||||2957|	GT:AD:DP:GQ:PL	1/1:0,28:28:66:916,66,0	scaffold149468_cov63	GLEAN	mRNA	214709	215602	0.76	+	.	ID=Soaet10008951
scaffold149473_cov62	60469	.	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;QD=32.45;SOR=1.022;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6804T>C|p.Val2268Val|6804/7260|6804/7260|2268/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,33:39:81:1083,81,0	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60484	.	G	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.817;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-5.771;QD=0.90;ReadPosRankSum=-0.115;SOR=1.846;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6789C>A|p.Pro2263Pro|6789/7260|6789/7260|2263/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,8:42:65:65,0,986	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60507	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.899;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=-5.923;QD=0.79;ReadPosRankSum=0.718;SOR=1.819;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6766C>T|p.Leu2256Phe|6766/7260|6766/7260|2256/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:35,8:43:62:62,0,1054	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60512	.	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.190;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-5.998;QD=0.84;ReadPosRankSum=0.944;SOR=1.808;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6761C>T|p.Ser2254Phe|6761/7260|6761/7260|2254/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:36,8:44:65:65,0,1015	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60513	.	A	G	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.190;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-5.998;QD=0.65;ReadPosRankSum=1.005;SOR=1.808;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6760T>C|p.Ser2254Pro|6760/7260|6760/7260|2254/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:36,8:44:57:57,0,1036	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60515	.	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.795;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=-5.771;QD=0.97;ReadPosRankSum=0.905;SOR=1.846;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6758A>G|p.Tyr2253Cys|6758/7260|6758/7260|2253/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,8:41:68:68,0,945	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60518	.	T	G	28.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.795;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-5.847;QD=0.69;ReadPosRankSum=1.106;SOR=1.832;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6755A>C|p.Glu2252Ala|6755/7260|6755/7260|2252/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,8:42:57:57,0,959	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60530	.	G	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.899;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-5.847;QD=0.88;ReadPosRankSum=1.234;SOR=1.832;ANN=T|stop_gained|HIGH|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6743C>A|p.Ser2248*|6743/7260|6743/7260|2248/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,8:42:65:65,0,1002	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60534	.	A	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.805;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=-5.771;QD=1.04;ReadPosRankSum=0.971;SOR=1.846;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6739T>G|p.Leu2247Val|6739/7260|6739/7260|2247/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,8:41:71:71,0,933	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60535	.	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.805;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=-5.771;QD=0.99;ReadPosRankSum=0.955;SOR=1.846;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6738T>C|p.Ser2246Ser|6738/7260|6738/7260|2246/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,8:41:69:69,0,935	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60552	.	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.82;MQ0=0;MQRankSum=-5.747;QD=2.27;ReadPosRankSum=-0.625;SOR=1.414;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6721C>T|p.Leu2241Phe|6721/7260|6721/7260|2241/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,10:40:99:119,0,811	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60564	.	C	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=0;MQRankSum=-5.590;QD=2.47;ReadPosRankSum=-1.176;SOR=0.641;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6709G>C|p.Gly2237Arg|6709/7260|6709/7260|2237/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,11:38:99:122,0,720	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60590	.	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=56.57;MQ0=0;MQRankSum=-5.112;QD=1.81;ReadPosRankSum=0.694;SOR=1.078;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6683T>C|p.Leu2228Pro|6683/7260|6683/7260|2228/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,8:33:88:88,0,780	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60591	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=56.57;MQ0=0;MQRankSum=-5.112;QD=1.05;ReadPosRankSum=0.673;SOR=1.078;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6682C>T|p.Leu2228Phe|6682/7260|6682/7260|2228/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,8:33:63:63,0,745	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60599	.	C	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=-4.452;QD=1.02;ReadPosRankSum=1.539;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6674G>C|p.Cys2225Ser|6674/7260|6674/7260|2225/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,7:32:60:60,0,773	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60602	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=-4.752;QD=1.06;ReadPosRankSum=2.336;SOR=1.329;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6671T>C|p.Phe2224Ser|6671/7260|6671/7260|2224/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,6:30:60:60,0,763	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60603	.	A	G	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-4.662;QD=0.75;ReadPosRankSum=2.237;SOR=1.214;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6670T>C|p.Phe2224Leu|6670/7260|6670/7260|2224/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,6:29:50:50,0,722	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60605	.	T	C	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-4.570;QD=0.96;ReadPosRankSum=1.825;SOR=1.095;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6668A>G|p.Gln2223Arg|6668/7260|6668/7260|2223/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,6:28:55:55,0,718	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60609	.	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-4.570;QD=1.10;ReadPosRankSum=1.907;SOR=1.095;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6664A>G|p.Asn2222Asp|6664/7260|6664/7260|2222/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,6:28:59:59,0,724	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60622	.	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-4.662;QD=1.20;ReadPosRankSum=1.833;SOR=0.999;ANN=C|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6651A>G|p.Leu2217Leu|6651/7260|6651/7260|2217/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,6:29:63:63,0,697	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	60675	.	C	A	12.99	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.142;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=-5.195;QD=0.45;ReadPosRankSum=-2.119;SOR=1.506;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.6598G>T|p.Asp2200Tyr|6598/7260|6598/7260|2200/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:22,7:29:41:41,0,728	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62022	.	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.785;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.95;MQ0=0;MQRankSum=-5.417;QD=1.47;ReadPosRankSum=-0.681;SOR=1.329;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5251G>A|p.Val1751Met|5251/7260|5251/7260|1751/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,6:38:84:84,0,1014	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62042	.	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.696;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.84;MQ0=0;MQRankSum=-5.932;QD=2.62;ReadPosRankSum=0.116;SOR=1.230;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5231G>A|p.Gly1744Glu|5231/7260|5231/7260|1744/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,7:37:99:125,0,944	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62044	.	C	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.696;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.84;MQ0=0;MQRankSum=-5.932;QD=2.53;ReadPosRankSum=0.155;SOR=1.230;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5229G>C|p.Val1743Val|5229/7260|5229/7260|1743/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,7:37:99:122,0,970	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62055	.	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.746;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-5.202;QD=3.08;ReadPosRankSum=0.406;SOR=1.627;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5218A>G|p.Lys1740Glu|5218/7260|5218/7260|1740/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,8:34:99:133,0,818	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62061	.	C	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-5.668;QD=2.85;ReadPosRankSum=0.789;SOR=1.292;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5212G>T|p.Gly1738Cys|5212/7260|5212/7260|1738/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,7:34:99:125,0,878	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62064	.	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-5.668;QD=2.82;ReadPosRankSum=1.215;SOR=1.292;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5209T>C|p.Phe1737Leu|5209/7260|5209/7260|1737/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,7:34:99:124,0,900	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62069	.	G	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.702;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=0;MQRankSum=-5.485;QD=3.21;ReadPosRankSum=1.209;SOR=1.493;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5204C>A|p.Pro1735Gln|5204/7260|5204/7260|1735/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,7:32:99:131,0,869	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62075	.	A	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-5.209;QD=3.47;ReadPosRankSum=2.344;SOR=0.999;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5198T>G|p.Ile1733Arg|5198/7260|5198/7260|1733/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,6:29:99:129,0,751	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62087	.	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=0;MQRankSum=-5.485;QD=3.06;ReadPosRankSum=2.303;SOR=0.432;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5186T>C|p.Leu1729Pro|5186/7260|5186/7260|1729/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,7:32:99:126,0,812	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62094	.	T	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=0;MQRankSum=-5.295;QD=3.66;ReadPosRankSum=1.644;SOR=0.402;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5179A>G|p.Asn1727Asp|5179/7260|5179/7260|1727/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,7:30:99:138,0,769	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62096	.	G	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-5.391;QD=3.64;ReadPosRankSum=1.300;SOR=0.476;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5177C>A|p.Pro1726His|5177/7260|5177/7260|1726/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,7:31:99:141,0,753	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62109	.	A	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.688;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=57.09;MQ0=0;MQRankSum=-5.468;QD=3.68;ReadPosRankSum=0.414;SOR=0.247;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5164T>C|p.Cys1722Arg|5164/7260|5164/7260|1722/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,8:32:99:146,0,738	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62123	.	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.158;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-5.388;QD=3.54;ReadPosRankSum=0.142;SOR=0.611;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5150G>A|p.Gly1717Asp|5150/7260|5150/7260|1717/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,7:31:99:138,0,734	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62124	.	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.158;HaplotypeScore=2.9157;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-5.388;QD=3.54;ReadPosRankSum=0.047;SOR=0.611;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5149G>A|p.Gly1717Ser|5149/7260|5149/7260|1717/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,7:31:99:138,0,735	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62125	.	T	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.158;HaplotypeScore=2.9157;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-5.388;QD=3.83;ReadPosRankSum=0.024;SOR=0.611;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5148A>T|p.Gln1716His|5148/7260|5148/7260|1716/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,7:31:99:147,0,686	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62173	.	A	G	23.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-5.214;QD=0.82;ReadPosRankSum=0.752;SOR=2.818;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5100T>C|p.Ile1700Ile|5100/7260|5100/7260|1700/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,3:29:52:52,0,802	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62177	.	G	A	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.226;HaplotypeScore=3.8314;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=0;MQRankSum=-5.117;QD=0.74;ReadPosRankSum=0.706;SOR=2.825;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5096C>T|p.Pro1699Leu|5096/7260|5096/7260|1699/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,3:28:49:49,0,712	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62183	.	A	G	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.455;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-4.426;QD=0.55;ReadPosRankSum=-0.221;SOR=3.253;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5090T>C|p.Leu1697Ser|5090/7260|5090/7260|1697/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,4:29:44:44,0,861	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62214	.	G	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.5266;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=1.627;QD=12.83;ReadPosRankSum=-1.020;SOR=0.527;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.5059C>T|p.Arg1687Cys|5059/7260|5059/7260|1687/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,16:36:99:490,0,614	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62427	.	G	A	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=47;Dels=0.00;ExcessHet=3.0103;FS=9.510;HaplotypeScore=4.7365;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-5.758;QD=0.34;ReadPosRankSum=-2.138;SOR=3.255;ANN=A|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4846C>T|p.Leu1616Leu|4846/7260|4846/7260|1616/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:43,4:47:44:44,0,1319	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62440	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DP=53;Dels=0.00;ExcessHet=3.0103;FS=16.397;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-6.476;QD=0.60;ReadPosRankSum=-1.376;SOR=3.905;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4833C>A|p.Gly1611Gly|4833/7260|4833/7260|1611/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:47,6:53:60:60,0,1368	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62453	.	C	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;DP=52;Dels=0.00;ExcessHet=3.0103;FS=16.456;HaplotypeScore=4.5279;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-6.411;QD=0.73;ReadPosRankSum=0.215;SOR=3.904;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4820G>C|p.Arg1607Thr|4820/7260|4820/7260|1607/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:46,6:52:66:66,0,1219	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62601	.	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.530;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=55.16;MQ0=0;MQRankSum=-4.745;QD=3.23;ReadPosRankSum=1.696;SOR=2.348;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4672G>A|p.Ala1558Thr|4672/7260|4672/7260|1558/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,8:29:99:122,0,636	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62615	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DP=27;Dels=0.00;ExcessHet=3.0103;FS=13.856;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=55.56;MQ0=0;MQRankSum=-4.904;QD=3.14;ReadPosRankSum=1.986;SOR=3.906;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4658G>A|p.Arg1553His|4658/7260|4658/7260|1553/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,6:27:99:110,0,615	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62623	.	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;DP=24;Dels=0.00;ExcessHet=3.0103;FS=10.447;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=55.67;MQ0=0;MQRankSum=-4.704;QD=2.53;ReadPosRankSum=1.533;SOR=3.594;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4650G>A|p.Leu1550Leu|4650/7260|4650/7260|1550/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,5:24:89:89,0,582	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62626	.	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DP=25;Dels=0.00;ExcessHet=3.0103;FS=17.042;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.85;MQ0=0;MQRankSum=-4.812;QD=2.19;ReadPosRankSum=1.740;SOR=3.590;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4647G>A|p.Gln1549Gln|4647/7260|4647/7260|1549/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,5:25:83:83,0,667	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62632	.	A	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=24;Dels=0.00;ExcessHet=3.0103;FS=17.042;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=-4.711;QD=2.32;ReadPosRankSum=1.513;SOR=3.228;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4641T>A|p.Pro1547Pro|4641/7260|4641/7260|1547/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:24:84:84,0,647	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62633	.	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=24;Dels=0.00;ExcessHet=3.0103;FS=15.420;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=-4.711;QD=2.45;ReadPosRankSum=1.359;SOR=3.228;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4640C>T|p.Pro1547Leu|4640/7260|4640/7260|1547/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,4:24:87:87,0,612	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62640	.	A	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DP=28;Dels=0.00;ExcessHet=3.0103;FS=17.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-5.123;QD=1.74;ReadPosRankSum=1.775;SOR=3.227;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4633T>A|p.Cys1545Ser|4633/7260|4633/7260|1545/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,4:28:77:77,0,741	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	62788	.	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.345;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.40;ReadPosRankSum=0.515;SOR=0.939;ANN=A|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4485C>T|p.Ile1495Ile|4485/7260|4485/7260|1495/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,12:42:99:297,0,818	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63019	.	C	G	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=55.94;MQ0=0;MQRankSum=-4.918;QD=0.61;ReadPosRankSum=-2.675;SOR=0.719;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4254G>C|p.Leu1418Leu|4254/7260|4254/7260|1418/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,5:26:44:44,0,701	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63027	.	G	T	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=0;MQRankSum=-4.706;QD=0.91;ReadPosRankSum=-3.066;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4246C>A|p.Leu1416Met|4246/7260|4246/7260|1416/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,5:24:50:50,0,641	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63037	.	A	G	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=0;MQRankSum=-4.706;QD=0.78;ReadPosRankSum=-2.066;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4236T>C|p.Arg1412Arg|4236/7260|4236/7260|1412/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,5:24:47:47,0,636	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63046	.	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=55.01;MQ0=0;MQRankSum=-5.093;QD=2.06;ReadPosRankSum=-1.542;SOR=1.473;ANN=A|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4227G>T|p.Leu1409Leu|4227/7260|4227/7260|1409/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:21,7:28:86:86,0,667	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63064	.	A	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=7.0726;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;MQRankSum=-4.658;QD=4.67;ReadPosRankSum=0.246;SOR=1.358;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4209T>C|p.Arg1403Arg|4209/7260|4209/7260|1403/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,9:28:99:159,0,495	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63065	.	C	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.909;HaplotypeScore=7.0726;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;MQRankSum=-5.071;QD=4.46;ReadPosRankSum=0.586;SOR=1.815;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4208G>T|p.Arg1403Leu|4208/7260|4208/7260|1403/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:20,8:28:99:153,0,585	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63066	.	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.129;HaplotypeScore=7.0726;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=0;MQRankSum=-4.966;QD=4.73;ReadPosRankSum=0.559;SOR=1.836;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4207C>T|p.Arg1403Cys|4207/7260|4207/7260|1403/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:19,8:27:99:156,0,559	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63079	.	G	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=8.1989;MLEAC=1;MLEAF=0.500;MQ=54.07;MQ0=0;MQRankSum=-5.444;QD=3.90;ReadPosRankSum=2.455;SOR=2.075;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4194C>A|p.Gly1398Gly|4194/7260|4194/7260|1398/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,9:32:99:153,0,601	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63080	.	C	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.988;HaplotypeScore=7.2831;MLEAC=1;MLEAF=0.500;MQ=54.26;MQ0=0;MQRankSum=-5.539;QD=3.69;ReadPosRankSum=2.613;SOR=2.060;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4193G>T|p.Gly1398Val|4193/7260|4193/7260|1398/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,9:33:99:150,0,649	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63082	.	C	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=5.4513;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=0;MQRankSum=-5.702;QD=3.88;ReadPosRankSum=2.194;SOR=1.582;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4191G>A|p.Pro1397Pro|4191/7260|4191/7260|1397/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,10:35:99:164,0,689	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63091	.	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.302;HaplotypeScore=3.7468;MLEAC=1;MLEAF=0.500;MQ=51.57;MQ0=0;MQRankSum=-5.953;QD=4.81;ReadPosRankSum=1.261;SOR=0.922;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4182G>A|p.Leu1394Leu|4182/7260|4182/7260|1394/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,14:39:99:216,0,645	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63098	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.323;HaplotypeScore=3.8225;MLEAC=1;MLEAF=0.500;MQ=51.33;MQ0=0;MQRankSum=-5.861;QD=4.89;ReadPosRankSum=1.985;SOR=0.870;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4175G>A|p.Cys1392Tyr|4175/7260|4175/7260|1392/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:24,14:38:99:214,0,688	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63103	.	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.303;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=50.43;MQ0=0;MQRankSum=-5.824;QD=5.05;ReadPosRankSum=1.316;SOR=0.633;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4170T>C|p.Ser1390Ser|4170/7260|4170/7260|1390/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,15:38:99:220,0,618	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63109	.	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.790;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-5.308;QD=4.18;ReadPosRankSum=1.964;SOR=0.317;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4164T>C|p.Pro1388Pro|4164/7260|4164/7260|1388/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,16:43:99:208,0,773	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63118	.	G	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.790;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-5.308;QD=4.25;ReadPosRankSum=1.725;SOR=0.317;ANN=A|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4155C>T|p.Thr1385Thr|4155/7260|4155/7260|1385/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,16:43:99:211,0,761	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63162	.	A	G	14.91	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6929;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=1;MQRankSum=-5.668;QD=0.43;ReadPosRankSum=1.046;SOR=0.593;ANN=G|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4111T>C|p.Leu1371Leu|4111/7260|4111/7260|1371/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,8:35:43:43,0,794	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63199	.	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.599;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=0;MQRankSum=-5.687;QD=1.49;ReadPosRankSum=-1.462;SOR=2.215;ANN=C|stop_lost|HIGH|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4074A>G|p.Ter1358Trpext*?|4074/7260|4074/7260|1358/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,5:34:79:79,0,771	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63209	.	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.179;HaplotypeScore=2.9051;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=0;MQRankSum=-5.687;QD=1.58;ReadPosRankSum=-0.852;SOR=2.215;ANN=G|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4064T>C|p.Leu1355Ser|4064/7260|4064/7260|1355/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,5:34:82:82,0,745	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63218	.	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.593;HaplotypeScore=2.9051;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=-5.506;QD=1.77;ReadPosRankSum=-0.312;SOR=2.395;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4055C>T|p.Ser1352Leu|4055/7260|4055/7260|1352/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,5:32:85:85,0,696	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63225	.	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.601;HaplotypeScore=4.7369;MLEAC=1;MLEAF=0.500;MQ=56.12;MQ0=0;MQRankSum=-5.126;QD=2.24;ReadPosRankSum=-1.112;SOR=2.194;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4048A>G|p.Arg1350Gly|4048/7260|4048/7260|1350/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:23,5:28:91:91,0,608	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63256	.	C	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.680;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=0;MQRankSum=-4.273;QD=2.59;ReadPosRankSum=2.130;SOR=1.483;ANN=A|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.4017G>T|p.Glu1339Asp|4017/7260|4017/7260|1339/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:17,3:20:80:80,0,468	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63277	.	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=-2.744;QD=6.34;ReadPosRankSum=1.200;SOR=1.371;ANN=T|synonymous_variant|LOW|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.3996G>A|p.Leu1332Leu|3996/7260|3996/7260|1332/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,3:11:98:98,0,229	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63294	.	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-2.515;QD=8.09;ReadPosRankSum=0.751;SOR=1.022;ANN=G|stop_lost|HIGH|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.3979T>C|p.Ter1327Glnext*?|3979/7260|3979/7260|1327/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:6,3:9:99:101,0,190	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	63326	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-1.834;QD=5.79;ReadPosRankSum=0.000;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.3947G>A|p.Ser1316Asn|3947/7260|3947/7260|1316/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,114	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	65163	.	T	C	863.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SOR=0.760;ANN=C|missense_variant|MODERATE|EXON_scaffold149473_cov62_60013_67272|GENE_EXON_scaffold149473_cov62_60013_67272|transcript|Soaet10009187|protein_coding|1/1|c.2110A>G|p.Thr704Ala|2110/7260|2110/7260|704/2419||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,29:29:66:892,66,0	scaffold149473_cov62	GLEAN	mRNA	60013	67272	0.97	-	.	ID=Soaet10009187
scaffold149473_cov62	103844	.	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.25;ReadPosRankSum=-0.073;SOR=0.223;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_102748_102925|GENE_EXON_scaffold149473_cov62_102748_102925|transcript|Soaet10009190|protein_coding|4/6|c.621+255G>A||||||	GT:AD:DP:GQ:PL	0/1:13,14:27:99:359,0,357	scaffold149473_cov62	GLEAN	mRNA	102748	107001	0.84	-	.	ID=Soaet10009190
scaffold149473_cov62	105489	.	AAAT	A	553.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;RPA=5,4;RU=AAT;SOR=0.859;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_102748_102925|GENE_EXON_scaffold149473_cov62_102748_102925|transcript|Soaet10009190|protein_coding|3/6|c.374+150_374+152delATT||||||	GT:AD:DP:GQ:PL	1/1:0,11:12:33:591,33,0	scaffold149473_cov62	GLEAN	mRNA	102748	107001	0.84	-	.	ID=Soaet10009190
scaffold149473_cov62	118257	.	A	C	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;DP=13;Dels=0.00;ExcessHet=3.0103;FS=22.175;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.860;SOR=3.219;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_115631_115778|GENE_EXON_scaffold149473_cov62_115631_115778|transcript|Soaet10009191|protein_coding|5/6|c.708+667T>G||||||	GT:AD:DP:GQ:PL	0/1:9,4:13:38:38,0,191	scaffold149473_cov62	GLEAN	mRNA	115631	120702	0.94	-	.	ID=Soaet10009191
scaffold149473_cov62	208963	.	A	G	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=2.9131;MLEAC=1;MLEAF=0.500;MQ=54.77;MQ0=2;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-0.105;SOR=1.492;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|5/6|c.735+35T>C||||||	GT:AD:DP:GQ:PL	0/1:5,7:12:63:195,0,63	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	210925	.	C	A	20.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.539;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=1;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.380;SOR=2.194;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.470-1494G>T||||||	GT:AD:DP:GQ:PL	0/1:28,3:31:49:49,0,849	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	210935	.	A	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.654;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-2.502;QD=1.77;ReadPosRankSum=-0.472;SOR=2.599;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.470-1504T>G||||||	GT:AD:DP:GQ:PL	0/1:27,4:31:83:83,0,792	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	210993	.	A	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;DP=40;Dels=0.00;ExcessHet=3.0103;FS=7.883;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.568;QD=5.59;ReadPosRankSum=1.425;SOR=1.748;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.470-1562T>C||||||	GT:AD:DP:GQ:PL	0/1:29,11:40:99:252,0,795	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211001	.	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;DP=39;Dels=0.00;ExcessHet=3.0103;FS=7.663;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.538;QD=5.92;ReadPosRankSum=1.484;SOR=1.763;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.470-1570T>C||||||	GT:AD:DP:GQ:PL	0/1:28,11:39:99:259,0,765	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211014	.	G	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;DP=36;Dels=0.00;ExcessHet=3.0103;FS=8.070;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.447;QD=5.30;ReadPosRankSum=0.568;SOR=1.741;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.470-1583C>A||||||	GT:AD:DP:GQ:PL	0/1:25,11:36:99:219,0,698	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211036	.	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.255;QD=9.10;ReadPosRankSum=-0.606;SOR=1.256;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.470-1605C>T||||||	GT:AD:DP:GQ:PL	0/1:24,14:38:99:374,0,667	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211037	.	C	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.283;QD=8.74;ReadPosRankSum=-0.396;SOR=1.229;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.470-1606G>A||||||	GT:AD:DP:GQ:PL	0/1:25,14:39:99:369,0,708	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211057	.	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.178;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-0.552;SOR=1.412;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1615G>A||||||	GT:AD:DP:GQ:PL	0/1:25,12:37:99:277,0,815	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211058	.	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.178;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-0.069;SOR=1.230;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1614T>C||||||	GT:AD:DP:GQ:PL	0/1:25,11:36:99:282,0,800	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211060	.	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.178;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.069;SOR=1.230;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1612G>A||||||	GT:AD:DP:GQ:PL	0/1:25,11:36:99:285,0,749	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211063	.	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.178;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.155;SOR=1.230;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1609G>A||||||	GT:AD:DP:GQ:PL	0/1:25,11:36:99:266,0,775	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211096	.	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.219;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=-0.219;QD=8.49;ReadPosRankSum=0.014;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1576C>T||||||	GT:AD:DP:GQ:PL	0/1:24,16:40:99:368,0,764	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211135	.	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.164;HaplotypeScore=2.8291;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=0.766;QD=7.05;ReadPosRankSum=2.115;SOR=0.840;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1537A>G||||||	GT:AD:DP:GQ:PL	0/1:24,12:36:99:282,0,774	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211138	.	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.254;HaplotypeScore=3.8207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.229;SOR=0.522;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1534G>A||||||	GT:AD:DP:GQ:PL	0/1:19,13:32:99:339,0,601	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211156	.	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.824;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.113;QD=9.97;ReadPosRankSum=-0.123;SOR=0.330;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1516G>A||||||	GT:AD:DP:GQ:PL	0/1:23,17:40:99:427,0,659	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211200	.	C	T	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.227;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.001;QD=14.11;ReadPosRankSum=-1.650;SOR=0.418;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1472G>A||||||	GT:AD:DP:GQ:PL	0/1:22,20:42:99:621,0,673	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211204	.	T	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.174;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.026;QD=14.23;ReadPosRankSum=-1.327;SOR=0.495;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1468A>G||||||	GT:AD:DP:GQ:PL	0/1:23,20:43:99:640,0,718	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211207	.	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.174;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.026;QD=14.09;ReadPosRankSum=-1.206;SOR=0.495;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1465G>A||||||	GT:AD:DP:GQ:PL	0/1:23,20:43:99:634,0,751	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211241	.	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.415;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.490;QD=12.40;ReadPosRankSum=0.100;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1431G>A||||||	GT:AD:DP:GQ:PL	0/1:26,23:49:99:636,0,778	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211262	.	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.072;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-1.481;QD=10.50;ReadPosRankSum=1.054;SOR=0.698;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1410G>A||||||	GT:AD:DP:GQ:PL	0/1:29,26:55:99:606,0,797	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211282	.	GTTTT	G	1772.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DP=60;ExcessHet=3.0103;FS=2.219;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=-0.966;QD=22.92;RPA=8,4;RU=T;ReadPosRankSum=0.296;SOR=0.767;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1386_469+1389delAAAA||||||	GT:AD:DP:GQ:PL	0/1:29,29:60:99:1810,0,1693	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211322	.	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.302;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=-1.329;QD=12.22;ReadPosRankSum=-0.032;SOR=0.377;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1350A>G||||||	GT:AD:DP:GQ:PL	0/1:27,30:57:99:725,0,813	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211359	.	C	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=-2.040;QD=11.30;ReadPosRankSum=0.110;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1313G>A||||||	GT:AD:DP:GQ:PL	0/1:26,26:52:99:616,0,781	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211389	.	T	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-2.308;QD=7.63;ReadPosRankSum=1.652;SOR=0.878;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1283A>T||||||	GT:AD:DP:GQ:PL	0/1:26,15:42:99:341,0,703	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211390	.	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-2.233;QD=8.30;ReadPosRankSum=1.814;SOR=0.984;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1282G>A||||||	GT:AD:DP:GQ:PL	0/1:26,16:42:99:377,0,747	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211391	.	A	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.270;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-2.233;QD=8.40;ReadPosRankSum=1.788;SOR=0.984;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1281T>C||||||	GT:AD:DP:GQ:PL	0/1:26,16:42:99:381,0,729	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211397	.	G	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.309;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=0;MQRankSum=-2.146;QD=8.89;ReadPosRankSum=0.995;SOR=1.148;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1275C>A||||||	GT:AD:DP:GQ:PL	0/1:24,16:40:99:384,0,696	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211415	.	T	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.271;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-2.172;QD=8.02;ReadPosRankSum=-0.837;SOR=0.914;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1257A>C||||||	GT:AD:DP:GQ:PL	0/1:23,15:38:99:333,0,634	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211419	.	C	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6479;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-2.250;QD=6.75;ReadPosRankSum=-0.940;SOR=0.804;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1253G>A||||||	GT:AD:DP:GQ:PL	0/1:23,14:37:99:278,0,602	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211425	.	TA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DP=32;ExcessHet=3.0103;FS=4.196;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-2.862;QD=6.92;RPA=3,2;RU=A;ReadPosRankSum=0.244;SOR=1.714;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1246delT||||||	GT:AD:DP:GQ:PL	0/1:21,8:32:99:238,0,767	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211431	.	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-2.928;QD=5.96;ReadPosRankSum=-0.399;SOR=1.609;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1241G>A||||||	GT:AD:DP:GQ:PL	0/1:22,8:30:99:207,0,685	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	211438	.	T	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-3.064;QD=5.67;ReadPosRankSum=-0.823;SOR=1.501;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+1234A>T||||||	GT:AD:DP:GQ:PL	0/1:21,7:28:99:187,0,589	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212022	.	C	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.653;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.81;MQ0=2;MQRankSum=-4.716;QD=0.39;ReadPosRankSum=-2.442;SOR=1.465;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+650G>A||||||	GT:AD:DP:GQ:PL	0/1:20,6:26:38:38,0,522	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212024	.	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;DP=27;Dels=0.00;ExcessHet=3.0103;FS=8.751;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=54.05;MQ0=2;MQRankSum=-4.207;QD=1.58;ReadPosRankSum=-2.651;SOR=1.884;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+648A>G||||||	GT:AD:DP:GQ:PL	0/1:20,7:27:71:71,0,519	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212073	.	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.848;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=2;MQRankSum=-2.591;QD=7.67;ReadPosRankSum=0.092;SOR=0.774;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+599G>A||||||	GT:AD:DP:GQ:PL	0/1:11,14:25:99:220,0,264	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212105	.	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=8.9141;MLEAC=1;MLEAF=0.500;MQ=53.41;MQ0=2;MQRankSum=-2.201;QD=8.16;ReadPosRankSum=2.938;SOR=0.223;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+567T>C||||||	GT:AD:DP:GQ:PL	0/1:12,12:24:99:224,0,249	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212109	.	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9141;MLEAC=1;MLEAF=0.500;MQ=53.41;MQ0=2;MQRankSum=-0.986;QD=2.32;ReadPosRankSum=1.405;SOR=0.368;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+563G>A||||||	GT:AD:DP:GQ:PL	0/1:18,6:24:84:84,0,392	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212113	.	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8300;MLEAC=1;MLEAF=0.500;MQ=53.41;MQ0=2;MQRankSum=-0.986;QD=2.94;ReadPosRankSum=2.215;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+559C>T||||||	GT:AD:DP:GQ:PL	0/1:18,4:24:93:93,0,357	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212156	.	A	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9988;MLEAC=1;MLEAF=0.500;MQ=53.78;MQ0=0;MQRankSum=-1.705;QD=11.54;ReadPosRankSum=-1.381;SOR=0.551;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+516T>A||||||	GT:AD:DP:GQ:PL	0/1:5,13:18:99:236,0,141	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212163	.	T	TA	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=0;MQRankSum=-0.849;QD=18.41;RPA=4,5;RU=A;ReadPosRankSum=-0.841;SOR=1.002;STR;ANN=TA|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+508_469+509insT||||||	GT:AD:DP:GQ:PL	0/1:5,9:15:99:295,0,150	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	212198	.	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6651;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-1.221;QD=12.18;ReadPosRankSum=-0.712;SOR=1.508;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_207274_207415|GENE_EXON_scaffold149473_cov62_207274_207415|transcript|Soaet10009195|protein_coding|3/6|c.469+474A>G||||||	GT:AD:DP:GQ:PL	0/1:5,5:10:99:150,0,111	scaffold149473_cov62	GLEAN	mRNA	207274	215662	0.92	-	.	ID=Soaet10009195
scaffold149473_cov62	251563	.	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;DP=32;Dels=0.00;ExcessHet=3.0103;FS=9.472;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-5.503;QD=1.31;ReadPosRankSum=-0.485;SOR=3.258;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+659G>A||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:70:70,0,855	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251568	.	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;DP=33;Dels=0.00;ExcessHet=3.0103;FS=8.939;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-5.593;QD=1.42;ReadPosRankSum=-0.055;SOR=3.134;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+654G>A||||||	GT:AD:DP:GQ:PL	0/1:29,4:33:75:75,0,888	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251572	.	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.673;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-5.503;QD=1.52;ReadPosRankSum=0.200;SOR=2.749;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+650T>C||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:77:77,0,890	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251575	.	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.666;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-5.593;QD=1.05;ReadPosRankSum=0.801;SOR=2.642;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+647G>C||||||	GT:AD:DP:GQ:PL	0/1:29,4:33:63:63,0,921	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251582	.	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.655;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-5.503;QD=1.06;ReadPosRankSum=1.312;SOR=2.494;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+640G>A||||||	GT:AD:DP:GQ:PL	0/1:28,4:32:62:62,0,831	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251592	.	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.642;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.25;MQ0=0;MQRankSum=-5.683;QD=1.20;ReadPosRankSum=2.113;SOR=2.542;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+630A>G||||||	GT:AD:DP:GQ:PL	0/1:30,4:34:69:69,0,853	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251598	.	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;DP=36;Dels=0.00;ExcessHet=3.0103;FS=8.502;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=58.35;MQ0=0;MQRankSum=-5.857;QD=1.05;ReadPosRankSum=2.544;SOR=2.808;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+624A>G||||||	GT:AD:DP:GQ:PL	0/1:32,4:36:66:66,0,870	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251621	.	A	G	22.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.105;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=-5.404;QD=0.74;ReadPosRankSum=1.771;SOR=2.584;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+601T>C||||||	GT:AD:DP:GQ:PL	0/1:28,3:31:51:51,0,830	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251622	.	A	G	25.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.105;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=-5.404;QD=0.83;ReadPosRankSum=1.705;SOR=2.584;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+600T>C||||||	GT:AD:DP:GQ:PL	0/1:28,3:31:54:54,0,815	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251632	.	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-3.875;QD=2.48;ReadPosRankSum=-1.073;SOR=0.631;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+590T>C||||||	GT:AD:DP:GQ:PL	0/1:29,6:35:99:115,0,792	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251644	.	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=-3.585;QD=2.66;ReadPosRankSum=-1.560;SOR=0.596;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+578T>C||||||	GT:AD:DP:GQ:PL	0/1:29,7:36:99:124,0,801	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251660	.	T	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-2.661;QD=3.24;ReadPosRankSum=-1.711;SOR=0.853;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+562A>T||||||	GT:AD:DP:GQ:PL	0/1:25,7:32:99:132,0,746	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251677	.	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-2.296;QD=6.57;ReadPosRankSum=-1.417;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+545T>C||||||	GT:AD:DP:GQ:PL	0/1:24,9:33:99:245,0,676	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251682	.	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-2.345;QD=6.14;ReadPosRankSum=-0.586;SOR=0.834;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+540T>C||||||	GT:AD:DP:GQ:PL	0/1:25,9:34:99:237,0,736	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251691	.	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-2.345;QD=6.38;ReadPosRankSum=0.586;SOR=0.834;ANN=A|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+531C>T||||||	GT:AD:DP:GQ:PL	0/1:25,9:34:99:245,0,641	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251694	.	A	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-2.345;QD=6.76;ReadPosRankSum=0.840;SOR=0.834;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+528T>A||||||	GT:AD:DP:GQ:PL	0/1:25,9:34:99:258,0,690	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251718	.	A	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8308;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=-2.179;QD=6.46;ReadPosRankSum=1.871;SOR=0.720;ANN=T|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+504T>A||||||	GT:AD:DP:GQ:PL	0/1:24,10:34:99:248,0,743	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251720	.	T	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8308;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-2.084;QD=8.12;ReadPosRankSum=1.728;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+502A>G||||||	GT:AD:DP:GQ:PL	0/1:22,10:33:99:288,0,659	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	251721	.	T	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8308;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=-2.084;QD=8.24;ReadPosRankSum=2.379;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|5/6|c.660+501A>C||||||	GT:AD:DP:GQ:PL	0/1:22,10:34:99:292,0,709	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149473_cov62	253031	.	T	C	192.9	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SOR=0.892;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149473_cov62_257832_257859|GENE_EXON_scaffold149473_cov62_257832_257859|transcript|Soaet10009198|protein_coding||c.-4801T>C|||||4801|,C|intron_variant|MODIFIER|EXON_scaffold149473_cov62_250123_250285|GENE_EXON_scaffold149473_cov62_250123_250285|transcript|Soaet10009197|protein_coding|3/6|c.261-320A>G||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:15:221,15,0	scaffold149473_cov62	GLEAN	mRNA	250123	254008	0.88	-	.	ID=Soaet10009197
scaffold149500_cov62	58686	.	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.995;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=-2.436;QD=9.94;ReadPosRankSum=-1.417;SOR=1.132;ANN=A|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.331C>T|p.Leu111Phe|331/420|331/420|111/139||	GT:AD:DP:GQ:PL	0/1:23,13:36:99:386,0,592	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58760	.	T	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.077;HaplotypeScore=4.7474;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-3.995;QD=11.77;ReadPosRankSum=1.237;SOR=0.395;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.257A>C|p.Asp86Ala|257/420|257/420|86/139||	GT:AD:DP:GQ:PL	0/1:19,17:36:99:452,0,576	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58891	.	T	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;DP=41;Dels=0.00;ExcessHet=3.0103;FS=11.282;HaplotypeScore=5.6612;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=0;MQRankSum=-5.524;QD=2.24;ReadPosRankSum=0.099;SOR=3.611;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.126A>C|p.Arg42Ser|126/420|126/420|42/139||	GT:AD:DP:GQ:PL	0/1:33,8:41:99:120,0,1028	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58903	.	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DP=41;Dels=0.00;ExcessHet=3.0103;FS=8.255;HaplotypeScore=7.6590;MLEAC=1;MLEAF=0.500;MQ=53.98;MQ0=1;MQRankSum=-5.428;QD=1.60;ReadPosRankSum=0.855;SOR=3.383;ANN=A|synonymous_variant|LOW|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.114G>T|p.Leu38Leu|114/420|114/420|38/139||	GT:AD:DP:GQ:PL	0/1:34,7:41:94:94,0,1000	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58907	.	T	C	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DP=42;Dels=0.00;ExcessHet=3.0103;FS=14.143;HaplotypeScore=7.6590;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=1;MQRankSum=-6.240;QD=3.42;ReadPosRankSum=0.851;SOR=3.912;ANN=C|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.110A>G|p.His37Arg|110/420|110/420|37/139||	GT:AD:DP:GQ:PL	0/1:32,10:42:99:172,0,857	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58921	.	A	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DP=46;Dels=0.00;ExcessHet=3.0103;FS=11.162;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.11;MQ0=2;MQRankSum=-5.121;QD=1.99;ReadPosRankSum=0.914;SOR=3.781;ANN=T|stop_gained|HIGH|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.96T>A|p.Tyr32*|96/420|96/420|32/139||	GT:AD:DP:GQ:PL	0/1:38,8:46:99:120,0,1015	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58926	.	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DP=50;Dels=0.00;ExcessHet=3.0103;FS=8.108;HaplotypeScore=3.9069;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=3;MQRankSum=-5.320;QD=1.14;ReadPosRankSum=0.992;SOR=3.532;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.91G>A|p.Ala31Thr|91/420|91/420|31/139||	GT:AD:DP:GQ:PL	0/1:42,8:50:85:85,0,1079	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58934	.	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=47;Dels=0.00;ExcessHet=3.0103;FS=18.402;HaplotypeScore=6.5273;MLEAC=1;MLEAF=0.500;MQ=52.48;MQ0=3;MQRankSum=-6.243;QD=2.38;ReadPosRankSum=0.756;SOR=4.804;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.83T>C|p.Ile28Thr|83/420|83/420|28/139||	GT:AD:DP:GQ:PL	0/1:34,13:47:99:140,0,996	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58968	.	G	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;DP=59;Dels=0.00;ExcessHet=3.0103;FS=6.760;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=48.35;MQ0=5;MQRankSum=-3.392;QD=1.22;ReadPosRankSum=-0.262;SOR=2.303;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.49C>A|p.Gln17Lys|49/420|49/420|17/139||	GT:AD:DP:GQ:PL	0/1:48,11:59:99:100,0,1138	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58979	.	C	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.5242;MLEAC=1;MLEAF=0.500;MQ=46.68;MQ0=7;MQRankSum=-3.720;QD=2.73;ReadPosRankSum=-0.571;SOR=0.758;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.38G>A|p.Cys13Tyr|38/420|38/420|13/139||	GT:AD:DP:GQ:PL	0/1:49,11:61:99:192,0,1122	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58981	.	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;DP=60;Dels=0.00;ExcessHet=3.0103;FS=7.148;HaplotypeScore=8.7356;MLEAC=1;MLEAF=0.500;MQ=45.90;MQ0=7;MQRankSum=-3.170;QD=1.03;ReadPosRankSum=0.435;SOR=2.281;ANN=A|synonymous_variant|LOW|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.36C>T|p.Asn12Asn|36/420|36/420|12/139||	GT:AD:DP:GQ:PL	0/1:47,13:60:90:90,0,1229	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	58995	.	G	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=43.70;MQ0=7;MQRankSum=-2.735;QD=2.72;ReadPosRankSum=-0.479;SOR=0.817;ANN=T|synonymous_variant|LOW|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.22C>A|p.Arg8Arg|22/420|22/420|8/139||	GT:AD:DP:GQ:PL	0/1:44,11:56:99:178,0,1111	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	59010	.	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.59;MQ0=7;MQRankSum=-2.073;QD=2.57;ReadPosRankSum=1.185;SOR=1.467;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_58597_59016|GENE_EXON_scaffold149500_cov62_58597_59016|transcript|Soaet10008568|protein_coding|1/1|c.7G>A|p.Asp3Asn|7/420|7/420|3/139||	GT:AD:DP:GQ:PL	0/1:49,10:59:99:180,0,1228	scaffold149500_cov62	GLEAN	mRNA	58597	59016	0.45	-	.	ID=Soaet10008568
scaffold149500_cov62	74513	.	G	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-0.711;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|transcript|Soaet10008569|protein_coding|1/1|c.8G>T|p.Ser3Ile|8/339|8/339|3/112||	GT:AD:DP:GQ:PL	0/1:8,5:13:99:111,0,158	scaffold149500_cov62	GLEAN	mRNA	74506	74844	0.97	+	.	ID=Soaet10008569
scaffold149500_cov62	74529	.	TA	T	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=-0.869;QD=10.44;RPA=2,1;RU=A;ReadPosRankSum=-0.141;SOR=1.022;STR;ANN=T|frameshift_variant|HIGH|EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|transcript|Soaet10008569|protein_coding|1/1|c.26delA|p.Asn9fs|26/339|26/339|9/112||INFO_REALIGN_3_PRIME;LOF=(EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|1|1.00)	GT:AD:DP:GQ:PL	0/1:8,5:13:99:173,0,300	scaffold149500_cov62	GLEAN	mRNA	74506	74844	0.97	+	.	ID=Soaet10008569
scaffold149500_cov62	74592	.	T	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.569;HaplotypeScore=3.9984;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=0;MQRankSum=-2.058;QD=7.58;ReadPosRankSum=0.228;SOR=1.071;ANN=A|missense_variant|MODERATE|EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|transcript|Soaet10008569|protein_coding|1/1|c.87T>A|p.Asn29Lys|87/339|87/339|29/112||	GT:AD:DP:GQ:PL	0/1:9,6:15:99:142,0,222	scaffold149500_cov62	GLEAN	mRNA	74506	74844	0.97	+	.	ID=Soaet10008569
scaffold149500_cov62	74593	.	A	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DP=15;Dels=0.00;ExcessHet=3.0103;FS=9.859;HaplotypeScore=3.9984;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=0;MQRankSum=-0.429;QD=16.12;ReadPosRankSum=0.983;SOR=0.337;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|transcript|Soaet10008569|protein_coding|1/1|c.88A>G|p.Lys30Glu|88/339|88/339|30/112||	GT:AD:DP:GQ:PL	0/1:4,11:15:99:270,0,124	scaffold149500_cov62	GLEAN	mRNA	74506	74844	0.97	+	.	ID=Soaet10008569
scaffold149500_cov62	74632	.	A	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-2.220;QD=12.17;ReadPosRankSum=2.987;SOR=0.842;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|transcript|Soaet10008569|protein_coding|1/1|c.127A>T|p.Ile43Leu|127/339|127/339|43/112||	GT:AD:DP:GQ:PL	0/1:6,10:16:99:223,0,170	scaffold149500_cov62	GLEAN	mRNA	74506	74844	0.97	+	.	ID=Soaet10008569
scaffold149500_cov62	74656	.	AC	A	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.94;MQ0=0;MQRankSum=1.633;QD=7.54;ReadPosRankSum=-1.185;SOR=0.582;ANN=A|frameshift_variant|HIGH|EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|transcript|Soaet10008569|protein_coding|1/1|c.152delC|p.Thr51fs|152/339|152/339|51/112||;LOF=(EXON_scaffold149500_cov62_74506_74844|GENE_EXON_scaffold149500_cov62_74506_74844|1|1.00)	GT:AD:DP:GQ:PL	0/1:13,5:18:99:173,0,537	scaffold149500_cov62	GLEAN	mRNA	74506	74844	0.97	+	.	ID=Soaet10008569
scaffold149500_cov62	121520	.	T	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.05;ReadPosRankSum=1.413;SOR=0.859;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_121138_121298|GENE_EXON_scaffold149500_cov62_121138_121298|transcript|Soaet10008570|protein_coding|2/2|c.183T>G|p.Ile61Met|183/414|183/414|61/137||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_123209_124678|GENE_EXON_scaffold149500_cov62_123209_124678|transcript|Soaet10008571|protein_coding||c.-1689T>G|||||1689|	GT:AD:DP:GQ:PL	0/1:6,11:17:99:335,0,150	scaffold149500_cov62	GLEAN	mRNA	121138	121751	0.61	+	.	ID=Soaet10008570
scaffold149500_cov62	121599	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-0.979;SOR=1.402;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_121138_121298|GENE_EXON_scaffold149500_cov62_121138_121298|transcript|Soaet10008570|protein_coding|2/2|c.262C>T|p.His88Tyr|262/414|262/414|88/137||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_123209_124678|GENE_EXON_scaffold149500_cov62_123209_124678|transcript|Soaet10008571|protein_coding||c.-1610C>T|||||1610|	GT:AD:DP:GQ:PL	0/1:6,9:15:99:208,0,170	scaffold149500_cov62	GLEAN	mRNA	121138	121751	0.61	+	.	ID=Soaet10008570
scaffold149500_cov62	123388	.	G	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=0.830;QD=5.59;ReadPosRankSum=1.335;SOR=0.754;ANN=T|synonymous_variant|LOW|EXON_scaffold149500_cov62_123209_124678|GENE_EXON_scaffold149500_cov62_123209_124678|transcript|Soaet10008571|protein_coding|1/1|c.180G>T|p.Thr60Thr|180/1470|180/1470|60/489||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_121138_121298|GENE_EXON_scaffold149500_cov62_121138_121298|transcript|Soaet10008570|protein_coding||c.*1637G>T|||||1637|	GT:AD:DP:GQ:PL	0/1:19,11:30:99:196,0,540	scaffold149500_cov62	GLEAN	mRNA	123209	124678	0.46	+	.	ID=Soaet10008571
scaffold149500_cov62	124187	.	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-0.516;SOR=0.542;ANN=A|missense_variant|MODERATE|EXON_scaffold149500_cov62_123209_124678|GENE_EXON_scaffold149500_cov62_123209_124678|transcript|Soaet10008571|protein_coding|1/1|c.979G>A|p.Glu327Lys|979/1470|979/1470|327/489||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_121138_121298|GENE_EXON_scaffold149500_cov62_121138_121298|transcript|Soaet10008570|protein_coding||c.*2436G>A|||||2436|	GT:AD:DP:GQ:PL	0/1:17,24:41:99:699,0,513	scaffold149500_cov62	GLEAN	mRNA	123209	124678	0.46	+	.	ID=Soaet10008571
scaffold149500_cov62	156569	.	T	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.852;SOR=0.740;ANN=C|missense_variant|MODERATE|EXON_scaffold149500_cov62_156029_157486|GENE_EXON_scaffold149500_cov62_156029_157486|transcript|Soaet10008573|protein_coding|1/1|c.541T>C|p.Phe181Leu|541/1458|541/1458|181/485||	GT:AD:DP:GQ:PL	0/1:15,13:28:99:311,0,364	scaffold149500_cov62	GLEAN	mRNA	156029	157486	1.00	+	.	ID=Soaet10008573
scaffold149500_cov62	156757	.	A	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.682;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=1;MQRankSum=0.000;QD=11.61;ReadPosRankSum=0.218;SOR=1.609;ANN=G|synonymous_variant|LOW|EXON_scaffold149500_cov62_156029_157486|GENE_EXON_scaffold149500_cov62_156029_157486|transcript|Soaet10008573|protein_coding|1/1|c.729A>G|p.Pro243Pro|729/1458|729/1458|243/485||	GT:AD:DP:GQ:PL	0/1:12,14:26:99:330,0,323	scaffold149500_cov62	GLEAN	mRNA	156029	157486	1.00	+	.	ID=Soaet10008573
scaffold149500_cov62	156966	.	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.950;SOR=0.527;ANN=A|missense_variant|MODERATE|EXON_scaffold149500_cov62_156029_157486|GENE_EXON_scaffold149500_cov62_156029_157486|transcript|Soaet10008573|protein_coding|1/1|c.938G>A|p.Arg313Lys|938/1458|938/1458|313/485||	GT:AD:DP:GQ:PL	0/1:20,6:26:99:160,0,502	scaffold149500_cov62	GLEAN	mRNA	156029	157486	1.00	+	.	ID=Soaet10008573
scaffold149500_cov62	157116	.	A	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.67;ReadPosRankSum=2.555;SOR=0.936;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_156029_157486|GENE_EXON_scaffold149500_cov62_156029_157486|transcript|Soaet10008573|protein_coding|1/1|c.1088A>G|p.Glu363Gly|1088/1458|1088/1458|363/485||	GT:AD:DP:GQ:PL	0/1:15,10:25:99:270,0,433	scaffold149500_cov62	GLEAN	mRNA	156029	157486	1.00	+	.	ID=Soaet10008573
scaffold149500_cov62	163216	.	C	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.550;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.119;SOR=1.148;ANN=A|missense_variant|MODERATE|EXON_scaffold149500_cov62_163023_164480|GENE_EXON_scaffold149500_cov62_163023_164480|transcript|Soaet10008574|protein_coding|1/1|c.1265G>T|p.Arg422Leu|1265/1458|1265/1458|422/485||	GT:AD:DP:GQ:PL	0/1:21,11:32:99:294,0,521	scaffold149500_cov62	GLEAN	mRNA	163023	164480	1.00	-	.	ID=Soaet10008574
scaffold149500_cov62	163295	.	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;DP=34;Dels=0.00;ExcessHet=3.0103;FS=11.199;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.32;ReadPosRankSum=0.017;SOR=2.559;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_163023_164480|GENE_EXON_scaffold149500_cov62_163023_164480|transcript|Soaet10008574|protein_coding|1/1|c.1186G>A|p.Glu396Lys|1186/1458|1186/1458|396/485||	GT:AD:DP:GQ:PL	0/1:18,16:34:99:447,0,488	scaffold149500_cov62	GLEAN	mRNA	163023	164480	1.00	-	.	ID=Soaet10008574
scaffold149500_cov62	181898	.	A	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=2;MQRankSum=1.686;QD=8.08;ReadPosRankSum=1.269;SOR=1.104;ANN=C|intron_variant|MODIFIER|EXON_scaffold149500_cov62_180426_180731|GENE_EXON_scaffold149500_cov62_180426_180731|transcript|Soaet10008575|protein_coding|1/2|c.454-116T>G||||||	GT:AD:DP:GQ:PL	0/1:14,9:23:99:214,0,301	scaffold149500_cov62	GLEAN	mRNA	180426	183087	0.86	-	.	ID=Soaet10008575
scaffold149500_cov62	182008	.	C	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.219;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=-0.566;QD=10.41;ReadPosRankSum=-0.818;SOR=0.105;ANN=G|intron_variant|MODIFIER|EXON_scaffold149500_cov62_180426_180731|GENE_EXON_scaffold149500_cov62_180426_180731|transcript|Soaet10008575|protein_coding|1/2|c.454-226G>C||||||	GT:AD:DP:GQ:PL	0/1:6,8:14:99:174,0,201	scaffold149500_cov62	GLEAN	mRNA	180426	183087	0.86	-	.	ID=Soaet10008575
scaffold149500_cov62	182114	.	ACTACTCC	A	883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-0.265;SOR=1.085;ANN=A|intron_variant|MODIFIER|EXON_scaffold149500_cov62_180426_180731|GENE_EXON_scaffold149500_cov62_180426_180731|transcript|Soaet10008575|protein_coding|1/2|c.454-339_454-333delGGAGTAG||||||	GT:AD:DP:GQ:PL	0/1:10,10:20:99:921,0,970	scaffold149500_cov62	GLEAN	mRNA	180426	183087	0.86	-	.	ID=Soaet10008575
scaffold149500_cov62	182477	.	CA	C	103.0	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.17;RPA=12,11;RU=A;ReadPosRankSum=1.383;SOR=0.707;STR;ANN=C|intron_variant|MODIFIER|EXON_scaffold149500_cov62_180426_180731|GENE_EXON_scaffold149500_cov62_180426_180731|transcript|Soaet10008575|protein_coding|1/2|c.453+157delT||||||	GT:AD:DP:GQ:PL	1/1:1,5:7:12:140,12,0	scaffold149500_cov62	GLEAN	mRNA	180426	183087	0.86	-	.	ID=Soaet10008575
scaffold149500_cov62	182720	.	A	G	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.566;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.83;ReadPosRankSum=0.063;SOR=1.214;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_180426_180731|GENE_EXON_scaffold149500_cov62_180426_180731|transcript|Soaet10008575|protein_coding|1/3|c.368T>C|p.Ile123Thr|368/909|368/909|123/302||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_187580_187744|GENE_EXON_scaffold149500_cov62_187580_187744|transcript|Soaet10008576|protein_coding||c.*4860T>C|||||4860|	GT:AD:DP:GQ:PL	0/1:21,10:31:99:271,0,579	scaffold149500_cov62	GLEAN	mRNA	180426	183087	0.86	-	.	ID=Soaet10008575
scaffold149500_cov62	182827	.	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.410;SOR=0.728;ANN=C|synonymous_variant|LOW|EXON_scaffold149500_cov62_180426_180731|GENE_EXON_scaffold149500_cov62_180426_180731|transcript|Soaet10008575|protein_coding|1/3|c.261A>G|p.Ala87Ala|261/909|261/909|87/302||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_187580_187744|GENE_EXON_scaffold149500_cov62_187580_187744|transcript|Soaet10008576|protein_coding||c.*4753A>G|||||4753|	GT:AD:DP:GQ:PL	0/1:13,13:26:99:322,0,394	scaffold149500_cov62	GLEAN	mRNA	180426	183087	0.86	-	.	ID=Soaet10008575
scaffold149500_cov62	187731	.	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.442;SOR=1.299;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_187580_187744|GENE_EXON_scaffold149500_cov62_187580_187744|transcript|Soaet10008576|protein_coding|1/1|c.14G>A|p.Gly5Glu|14/165|14/165|5/54||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_180426_180731|GENE_EXON_scaffold149500_cov62_180426_180731|transcript|Soaet10008575|protein_coding||c.-4644G>A|||||4644|	GT:AD:DP:GQ:PL	0/1:14,9:23:99:190,0,412	scaffold149500_cov62	GLEAN	mRNA	187580	187744	0.97	-	.	ID=Soaet10008576
scaffold149500_cov62	216468	.	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.544;SOR=0.446;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|3/3|c.448G>A|p.Val150Ile|448/660|448/660|150/219||	GT:AD:DP:GQ:PL	0/1:13,8:21:99:236,0,374	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	216620	.	C	G	210.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.57;ReadPosRankSum=0.290;SOR=0.293;ANN=G|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|2/2|c.355-59G>C||||||	GT:AD:DP:GQ:PL	0/1:1,11:12:21:239,0,21	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	216650	.	A	C	201.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.35;ReadPosRankSum=1.112;SOR=0.399;ANN=C|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|2/2|c.355-89T>G||||||	GT:AD:DP:GQ:PL	0/1:1,10:11:21:230,0,21	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	216719	.	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.319;SOR=0.269;ANN=T|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|2/2|c.355-158G>A||||||	GT:AD:DP:GQ:PL	0/1:2,6:8:66:151,0,66	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	216836	.	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=8;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.414;SOR=2.303;ANN=C|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|2/2|c.355-275A>G||||||	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,111	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	218097	.	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-2.369;SOR=0.307;ANN=A|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|2/2|c.354+1373A>T||||||	GT:AD:DP:GQ:PL	0/1:5,3:8:63:63,0,153	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	218942	.	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-1.487;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|2/2|c.354+528A>G||||||	GT:AD:DP:GQ:PL	0/1:10,4:14:99:133,0,226	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	219089	.	CAAAAAGG	C	838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.98;ReadPosRankSum=1.438;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|2/2|c.354+374_354+380delCCTTTTT||||||	GT:AD:DP:GQ:PL	0/1:14,10:25:99:876,0,1217	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	219754	.	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=43.09;MQ0=5;MQRankSum=1.275;QD=2.99;ReadPosRankSum=-0.547;SOR=0.446;ANN=G|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|1/2|c.205-135T>C||||||	GT:AD:DP:GQ:PL	0/1:17,4:21:91:91,0,260	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	219807	.	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.531;SOR=0.527;ANN=T|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|1/2|c.205-188G>A||||||	GT:AD:DP:GQ:PL	0/1:9,4:13:99:128,0,204	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	219842	.	TC	T	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.90;RPA=3,2;RU=C;ReadPosRankSum=-1.124;SOR=1.022;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|1/2|c.205-224delG||||||	GT:AD:DP:GQ:PL	0/1:7,6:13:99:166,0,216	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	220020	.	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.62;ReadPosRankSum=0.660;SOR=0.148;ANN=A|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|1/2|c.204+359C>T||||||	GT:AD:DP:GQ:PL	0/1:2,9:11:63:200,0,63	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	220132	.	A	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.75;ReadPosRankSum=0.000;SOR=0.223;ANN=G|intron_variant|MODIFIER|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|1/2|c.204+247T>C||||||	GT:AD:DP:GQ:PL	0/1:1,4:5:30:107,0,30	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	220512	.	A	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.44;ReadPosRankSum=-0.073;SOR=0.260;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_216256_216561|GENE_EXON_scaffold149500_cov62_216256_216561|transcript|Soaet10008577|protein_coding|1/3|c.71T>A|p.Ile24Lys|71/660|71/660|24/219||	GT:AD:DP:GQ:PL	0/1:15,12:27:99:364,0,399	scaffold149500_cov62	GLEAN	mRNA	216256	220582	0.86	-	.	ID=Soaet10008577
scaffold149500_cov62	232942	.	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.440;SOR=0.693;ANN=G|synonymous_variant|LOW|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding|1/1|c.270T>C|p.Gly90Gly|270/297|270/297|90/98||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding||c.*666T>C|||||666|	GT:AD:DP:GQ:PL	0/1:14,10:24:99:222,0,433	scaffold149500_cov62	GLEAN	mRNA	232915	233211	0.97	-	.	ID=Soaet10008581
scaffold149500_cov62	232962	.	A	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.80;ReadPosRankSum=0.869;SOR=0.569;ANN=C|missense_variant|MODERATE|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding|1/1|c.250T>G|p.Tyr84Asp|250/297|250/297|84/98||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding||c.*646T>G|||||646|	GT:AD:DP:GQ:PL	0/1:13,8:21:99:171,0,372	scaffold149500_cov62	GLEAN	mRNA	232915	233211	0.97	-	.	ID=Soaet10008581
scaffold149500_cov62	233033	.	G	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-1.739;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding|1/1|c.179C>T|p.Ala60Val|179/297|179/297|60/98||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding||c.*575C>T|||||575|	GT:AD:DP:GQ:PL	0/1:12,8:20:99:224,0,365	scaffold149500_cov62	GLEAN	mRNA	232915	233211	0.97	-	.	ID=Soaet10008581
scaffold149500_cov62	233160	.	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-1.879;SOR=0.569;ANN=C|missense_variant|MODERATE|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding|1/1|c.52A>G|p.Ile18Val|52/297|52/297|18/98||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding||c.*448A>G|||||448|	GT:AD:DP:GQ:PL	0/1:13,12:25:99:286,0,408	scaffold149500_cov62	GLEAN	mRNA	232915	233211	0.97	-	.	ID=Soaet10008581
scaffold149500_cov62	233738	.	C	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.32;ReadPosRankSum=-0.645;SOR=0.772;ANN=T|missense_variant|MODERATE|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding|2/3|c.559G>A|p.Glu187Lys|559/675|559/675|187/224||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding||c.-527G>A|||||527|	GT:AD:DP:GQ:PL	0/1:10,14:24:99:324,0,255	scaffold149500_cov62	GLEAN	mRNA	233608	234408	0.49	-	.	ID=Soaet10008582
scaffold149500_cov62	233897	.	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.533;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-0.691;SOR=1.108;ANN=C|missense_variant|MODERATE|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding|2/3|c.400A>G|p.Lys134Glu|400/675|400/675|134/224||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding||c.-686A>G|||||686|	GT:AD:DP:GQ:PL	0/1:7,6:13:99:178,0,221	scaffold149500_cov62	GLEAN	mRNA	233608	234408	0.49	-	.	ID=Soaet10008582
scaffold149500_cov62	234009	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-1.135;SOR=1.061;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding||c.-798G>A|||||798|,T|intron_variant|MODIFIER|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding|1/2|c.323-35G>A||||||	GT:AD:DP:GQ:PL	0/1:21,3:24:39:39,0,550	scaffold149500_cov62	GLEAN	mRNA	233608	234408	0.49	-	.	ID=Soaet10008582
scaffold149500_cov62	234266	.	C	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.398;SOR=0.660;ANN=G|missense_variant|MODERATE|EXON_scaffold149500_cov62_233608_233718|GENE_EXON_scaffold149500_cov62_233608_233718|transcript|Soaet10008582|protein_coding|1/3|c.143G>C|p.Arg48Pro|143/675|143/675|48/224||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149500_cov62_232915_233211|GENE_EXON_scaffold149500_cov62_232915_233211|transcript|Soaet10008581|protein_coding||c.-1055G>C|||||1055|	GT:AD:DP:GQ:PL	0/1:18,15:33:99:310,0,556	scaffold149500_cov62	GLEAN	mRNA	233608	234408	0.49	-	.	ID=Soaet10008582
scaffold149564_cov62	50356	.	A	T	868.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=0.997;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_50175_51101|GENE_EXON_scaffold149564_cov62_50175_51101|transcript|Soaet10008221|protein_coding|1/1|c.182A>T|p.His61Leu|182/927|182/927|61/308||	GT:AD:DP:GQ:PL	1/1:0,28:28:66:897,66,0	scaffold149564_cov62	GLEAN	mRNA	50175	51101	1.00	+	.	ID=Soaet10008221
scaffold149564_cov62	50538	.	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.285;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.078;SOR=1.863;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_50175_51101|GENE_EXON_scaffold149564_cov62_50175_51101|transcript|Soaet10008221|protein_coding|1/1|c.364C>T|p.Arg122Cys|364/927|364/927|122/308||	GT:AD:DP:GQ:PL	0/1:12,8:20:99:190,0,369	scaffold149564_cov62	GLEAN	mRNA	50175	51101	1.00	+	.	ID=Soaet10008221
scaffold149564_cov62	50892	.	T	G	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=2.293;QD=13.83;ReadPosRankSum=0.291;SOR=0.941;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_50175_51101|GENE_EXON_scaffold149564_cov62_50175_51101|transcript|Soaet10008221|protein_coding|1/1|c.718T>G|p.Ser240Ala|718/927|718/927|240/308||	GT:AD:DP:GQ:PL	0/1:14,16:30:99:443,0,392	scaffold149564_cov62	GLEAN	mRNA	50175	51101	1.00	+	.	ID=Soaet10008221
scaffold149564_cov62	99626	.	T	G	560.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=26.70;SOR=0.784;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.72+66T>G||||||	GT:AD:DP:GQ:PL	1/1:0,21:22:42:589,42,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99627	.	T	C	565.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.72;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.72+67T>C||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:42:594,42,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99657	.	C	T	675.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6626;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=28.16;SOR=0.859;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.72+97C>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:25:51:704,51,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99749	.	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-2.638;SOR=0.569;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.72+189C>T||||||	GT:AD:DP:GQ:PL	0/1:13,10:23:99:217,0,300	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99820	.	C	A	454.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=30.32;SOR=1.112;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.73-148C>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:36:483,36,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99821	.	G	A	417.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=27.85;SOR=1.112;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.73-147G>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:446,33,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99870	.	A	G	441.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.45;SOR=1.112;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.73-98A>G||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:470,33,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99901	.	C	A	386.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.23;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.73-67C>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:30:415,30,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99912	.	GA	G	366.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;RPA=8,7;RU=A;SOR=1.022;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.73-55delA||||||	GT:AD:DP:GQ:PL	1/1:0,12:13:36:404,36,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99924	.	A	G	399.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SOR=0.836;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|1/2|c.73-44A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:30:428,30,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	99978	.	T	C	448.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.05;SOR=0.941;ANN=C|missense_variant|MODERATE|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|2/3|c.83T>C|p.Ile28Thr|83/477|83/477|28/158||	GT:AD:DP:GQ:PL	1/1:0,16:16:33:477,33,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	100067	.	G	A	648.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.15;SOR=1.292;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|2/2|c.123-36G>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:48:677,48,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	100170	.	A	T	1066.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.41;SOR=1.214;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|3/3|c.190A>T|p.Ser64Cys|190/477|190/477|64/158||	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1095,78,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	100239	.	A	G	1222.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=29.11;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|3/3|c.259A>G|p.Thr87Ala|259/477|259/477|87/158||	GT:AD:DP:GQ:PL	1/1:0,42:42:90:1251,90,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	100261	.	C	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-0.603;QD=17.72;ReadPosRankSum=-0.739;SOR=0.639;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|3/3|c.281C>T|p.Thr94Ile|281/477|281/477|94/158||	GT:AD:DP:GQ:PL	0/1:11,25:36:99:666,0,213	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	100295	.	C	T	925.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.93;SOR=1.112;ANN=T|synonymous_variant|LOW|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|3/3|c.315C>T|p.Ser105Ser|315/477|315/477|105/158||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:954,69,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	100364	.	T	G	769.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.99;SOR=0.874;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_99489_99560|GENE_EXON_scaffold149564_cov62_99489_99560|transcript|Soaet10008227|protein_coding|3/3|c.384T>G|p.Asp128Glu|384/477|384/477|128/158||	GT:AD:DP:GQ:PL	1/1:0,22:22:57:798,57,0	scaffold149564_cov62	GLEAN	mRNA	99489	100457	0.70	+	.	ID=Soaet10008227
scaffold149564_cov62	140814	.	A	G	52.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;QD=13.19;SOR=0.693;ANN=G|stop_lost&splice_region_variant|HIGH|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.8575T>C|p.Ter2859Argext*?|8575/8577|8575/8577|2859/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:80,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142114	.	A	G	66.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=0;QD=16.57;SOR=3.258;ANN=G|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7275T>C|p.Ile2425Ile|7275/8577|7275/8577|2425/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:9:94,9,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142168	.	T	G	93.03	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=0;QD=18.61;SOR=3.611;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7221A>C|p.Leu2407Phe|7221/8577|7221/8577|2407/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,5:5:12:121,12,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142178	.	C	T	53.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=0;MQRankSum=0.431;QD=8.98;ReadPosRankSum=0.842;SOR=3.258;ANN=T|stop_gained|HIGH|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7211G>A|p.Trp2404*|7211/8577|7211/8577|2404/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,4:6:16:82,0,16	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142213	.	C	T	81.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7581;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=0;MQRankSum=0.792;QD=11.71;ReadPosRankSum=-1.465;SOR=1.981;ANN=T|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7176G>A|p.Gln2392Gln|7176/8577|7176/8577|2392/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,5:8:13:110,0,13	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142306	.	G	A	70.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=0;MQRankSum=0.566;QD=10.13;ReadPosRankSum=1.465;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7083C>T|p.Asp2361Asp|7083/8577|7083/8577|2361/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,6:7:16:99,0,16	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142312	.	C	G	137.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=19.70;SOR=2.584;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7077G>C|p.Glu2359Asp|7077/8577|7077/8577|2359/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,7:7:15:166,15,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142325	.	G	A	94.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=0;MQRankSum=0.566;QD=13.57;ReadPosRankSum=1.465;SOR=1.179;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7064C>T|p.Pro2355Leu|7064/8577|7064/8577|2355/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:1,6:7:13:123,0,13	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142348	.	C	T	76.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.92;MQ0=0;QD=15.26;SOR=1.981;ANN=T|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7041G>A|p.Gln2347Gln|7041/8577|7041/8577|2347/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,5:5:9:104,9,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142371	.	G	T	35.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=0;QD=11.91;SOR=2.833;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7018C>A|p.His2340Asn|7018/8577|7018/8577|2340/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,3:3:6:63,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	142385	.	G	A	35.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=0;QD=11.91;SOR=2.833;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.7004C>T|p.Thr2335Ile|7004/8577|7004/8577|2335/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,3:3:6:63,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	143579	.	G	A	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=4.65;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5810C>T|p.Thr1937Ile|5810/8577|5810/8577|1937/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	143608	.	C	T	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=4.65;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5781G>A|p.Met1927Ile|5781/8577|5781/8577|1927/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144078	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;MQRankSum=0.967;QD=5.22;ReadPosRankSum=-0.967;SOR=0.368;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5311C>T|p.Pro1771Ser|5311/8577|5311/8577|1771/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,1:3:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144085	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;MQRankSum=0.967;QD=5.22;ReadPosRankSum=-0.967;SOR=0.368;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5304C>T|p.Tyr1768Tyr|5304/8577|5304/8577|1768/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,1:3:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144094	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;MQRankSum=0.967;QD=5.22;ReadPosRankSum=-0.967;SOR=0.368;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5295C>T|p.Val1765Val|5295/8577|5295/8577|1765/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:2,1:3:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144129	.	T	A	95.28	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=15.88;SOR=2.303;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5260A>T|p.Thr1754Ser|5260/8577|5260/8577|1754/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,6:6:9:123,9,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144130	.	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=39.27;MQ0=0;MQRankSum=0.842;QD=7.46;ReadPosRankSum=-0.524;SOR=1.179;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5259C>T|p.Ala1753Ala|5259/8577|5259/8577|1753/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,2:6:36:73,0,36	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144154	.	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4537;MLEAC=1;MLEAF=0.500;MQ=39.57;MQ0=0;MQRankSum=0.842;QD=7.79;ReadPosRankSum=0.842;SOR=1.179;ANN=T|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5235G>A|p.Gln1745Gln|5235/8577|5235/8577|1745/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:4,2:6:36:75,0,36	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144159	.	T	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3280;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=0;MQRankSum=1.068;QD=6.40;ReadPosRankSum=1.068;SOR=1.802;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5230A>T|p.Ser1744Cys|5230/8577|5230/8577|1744/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:5,2:7:36:73,0,36	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144186	.	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2811;MLEAC=1;MLEAF=0.500;MQ=35.03;MQ0=0;MQRankSum=1.795;QD=4.52;ReadPosRankSum=-0.179;SOR=0.495;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5203C>T|p.Pro1735Ser|5203/8577|5203/8577|1735/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:7,4:11:61:78,0,61	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144196	.	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=34.25;MQ0=0;MQRankSum=1.973;QD=4.15;ReadPosRankSum=0.327;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5193C>T|p.Asn1731Asn|5193/8577|5193/8577|1731/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:8,4:12:77:78,0,77	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144294	.	A	G	101.28	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=2;QD=11.25;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.5095T>C|p.Tyr1699His|5095/8577|5095/8577|1699/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,9:9:9:129,9,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144565	.	C	T	11.12	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=34.39;MQ0=0;MQRankSum=1.383;QD=2.78;ReadPosRankSum=1.383;SOR=0.693;ANN=T|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4824G>A|p.Glu1608Glu|4824/8577|4824/8577|1608/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:2,2:4:35:39,0,35	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	144987	.	G	A	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4402C>T|p.Leu1468Phe|4402/8577|4402/8577|1468/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145006	.	A	G	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=G|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4383T>C|p.Asp1461Asp|4383/8577|4383/8577|1461/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145010	.	T	C	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4379A>G|p.His1460Arg|4379/8577|4379/8577|1460/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145021	.	G	T	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4368C>A|p.Asn1456Lys|4368/8577|4368/8577|1456/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145025	.	T	G	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4364A>C|p.His1455Pro|4364/8577|4364/8577|1455/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145033	.	C	A	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4356G>T|p.Leu1452Leu|4356/8577|4356/8577|1452/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145041	.	G	A	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4348C>T|p.Pro1450Ser|4348/8577|4348/8577|1450/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145042	.	T	A	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4347A>T|p.Ile1449Ile|4347/8577|4347/8577|1449/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145047	.	A	G	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=G|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4342T>C|p.Leu1448Leu|4342/8577|4342/8577|1448/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145049	.	G	T	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4340C>A|p.Ala1447Asp|4340/8577|4340/8577|1447/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145050	.	C	T	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4339G>A|p.Ala1447Thr|4339/8577|4339/8577|1447/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145052	.	A	G	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4337T>C|p.Ile1446Thr|4337/8577|4337/8577|1446/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145076	.	T	C	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=C|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4313A>G|p.Asp1438Gly|4313/8577|4313/8577|1438/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145078	.	G	A	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4311C>T|p.His1437His|4311/8577|4311/8577|1437/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145103	.	A	G	10.9	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4286T>C|p.Ile1429Thr|4286/8577|4286/8577|1429/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145162	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=7.83;SOR=2.303;ANN=C|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4227A>G|p.Arg1409Arg|4227/8577|4227/8577|1409/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145179	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=7.83;SOR=2.303;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4210T>C|p.Trp1404Arg|4210/8577|4210/8577|1404/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145203	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=7.83;SOR=2.303;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4186T>C|p.Ser1396Pro|4186/8577|4186/8577|1396/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145305	.	T	A	166.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=23.84;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4084A>T|p.Asn1362Tyr|4084/8577|4084/8577|1362/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,7:7:15:195,15,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145344	.	T	A	164.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=23.56;SOR=1.609;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4045A>T|p.Ile1349Leu|4045/8577|4045/8577|1349/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,7:7:15:193,15,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145355	.	A	G	166.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=23.84;SOR=1.609;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4034T>C|p.Val1345Ala|4034/8577|4034/8577|1345/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,7:7:15:195,15,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145368	.	G	A	62.74	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=12.55;SOR=1.022;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.4021C>T|p.Pro1341Ser|4021/8577|4021/8577|1341/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,5:5:6:90,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145877	.	G	A	18.59	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=0;MQRankSum=0.967;QD=6.20;ReadPosRankSum=0.000;SOR=0.223;ANN=A|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.3512C>T|p.Pro1171Leu|3512/8577|3512/8577|1171/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:1,2:3:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	145914	.	A	T	18.59	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=0;QD=6.20;SOR=1.179;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.3475T>A|p.Ser1159Thr|3475/8577|3475/8577|1159/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,3:3:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146525	.	A	G	41.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;QD=10.44;SOR=3.258;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2864T>C|p.Leu955Pro|2864/8577|2864/8577|955/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:69,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146550	.	T	C	41.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;QD=10.44;SOR=3.258;ANN=C|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2839A>G|p.Met947Val|2839/8577|2839/8577|947/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:69,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146567	.	G	C	41.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;QD=10.44;SOR=3.258;ANN=C|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2822C>G|p.Thr941Ser|2822/8577|2822/8577|941/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:69,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146581	.	G	A	41.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;QD=10.44;SOR=3.258;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2808C>T|p.Ser936Ser|2808/8577|2808/8577|936/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:69,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146606	.	A	G	41.74	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.10;MQ0=0;QD=8.35;SOR=1.981;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2783T>C|p.Phe928Ser|2783/8577|2783/8577|928/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,5:5:6:69,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146723	.	C	T	36.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=0;QD=9.19;SOR=3.258;ANN=T|stop_gained|HIGH|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2666G>A|p.Trp889*|2666/8577|2666/8577|889/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:6:64,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146758	.	C	T	41.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=13.91;SOR=2.833;ANN=T|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2631G>A|p.Gln877Gln|2631/8577|2631/8577|877/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,3:3:6:69,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146775	.	A	G	41.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=13.91;SOR=2.833;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2614T>C|p.Ser872Pro|2614/8577|2614/8577|872/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,3:3:6:69,6,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146842	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=T|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2547G>A|p.Ala849Ala|2547/8577|2547/8577|849/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	146851	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.2538C>T|p.Asp846Asp|2538/8577|2538/8577|846/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	148120	.	G	A	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.79;MQ0=0;QD=4.65;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.1269C>T|p.Asn423Asn|1269/8577|1269/8577|423/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	148149	.	C	T	18.59	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.79;MQ0=0;QD=4.65;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.1240G>A|p.Val414Ile|1240/8577|1240/8577|414/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,4:4:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	148395	.	C	T	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=9.30;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.994G>A|p.Gly332Arg|994/8577|994/8577|332/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	148417	.	G	A	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=9.30;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.972C>T|p.Pro324Pro|972/8577|972/8577|324/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	148464	.	A	G	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=9.30;SOR=0.693;ANN=G|missense_variant|MODERATE|EXON_scaffold149564_cov62_140812_149388|GENE_EXON_scaffold149564_cov62_140812_149388|transcript|Soaet10008229|protein_coding|1/1|c.925T>C|p.Tyr309His|925/8577|925/8577|309/2858||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	140812	149388	0.97	-	.	ID=Soaet10008229
scaffold149564_cov62	199931	.	A	T	31.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=1;QD=10.58;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-178T>A||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:59,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	199948	.	A	G	73.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=1;QD=18.32;SOR=2.833;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-195T>C||||||	GT:AD:DP:GQ:PL	1/1:1,3:4:9:101,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	199957	.	G	C	100.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.78;MQ0=1;MQRankSum=-0.524;QD=16.80;ReadPosRankSum=1.282;SOR=1.981;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-204C>G||||||	GT:AD:DP:GQ:PL	0/1:2,4:6:27:129,0,27	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200101	.	A	T	141.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=10;MQRankSum=-0.272;QD=7.88;ReadPosRankSum=1.611;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-348T>A||||||	GT:AD:DP:GQ:PL	0/1:12,6:18:27:170,0,27	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200435	.	A	G	47.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=23.87;SOR=2.303;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-682T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200441	.	A	G	49.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=1;QD=16.58;SOR=2.303;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-688T>C||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:77,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200509	.	G	A	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=4;MQRankSum=-1.645;QD=1.76;ReadPosRankSum=-0.842;SOR=0.446;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-756C>T||||||	GT:AD:DP:GQ:PL	0/1:7,2:9:44:44,0,70	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200542	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=30.55;MQ0=5;MQRankSum=2.166;QD=2.11;ReadPosRankSum=-1.200;SOR=0.346;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-789C>T||||||	GT:AD:DP:GQ:PL	0/1:13,3:16:62:62,0,209	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200545	.	A	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=30.55;MQ0=5;MQRankSum=2.166;QD=2.11;ReadPosRankSum=-0.789;SOR=0.346;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-792T>G||||||	GT:AD:DP:GQ:PL	0/1:13,3:16:62:62,0,211	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200666	.	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9807;MLEAC=1;MLEAF=0.500;MQ=40.13;MQ0=2;MQRankSum=-1.657;QD=1.84;ReadPosRankSum=-1.328;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-913C>T||||||	GT:AD:DP:GQ:PL	0/1:14,6:20:65:65,0,346	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200671	.	T	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.528;HaplotypeScore=5.9834;MLEAC=1;MLEAF=0.500;MQ=40.14;MQ0=2;MQRankSum=0.151;QD=3.57;ReadPosRankSum=1.810;SOR=0.086;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-918A>T||||||	GT:AD:DP:GQ:PL	0/1:13,6:19:96:96,0,311	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200683	.	G	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=39.71;MQ0=2;MQRankSum=1.774;QD=4.42;ReadPosRankSum=-1.131;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-930C>A||||||	GT:AD:DP:GQ:PL	0/1:12,4:17:99:99,0,244	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200703	.	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=9;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=1.9889;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=1;MQRankSum=-1.100;QD=4.53;ReadPosRankSum=1.100;SOR=0.039;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-950T>C||||||	GT:AD:DP:GQ:PL	0/1:5,4:9:69:69,0,120	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200705	.	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DP=9;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=1.9889;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=1;MQRankSum=-1.100;QD=4.86;ReadPosRankSum=1.100;SOR=0.039;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-952C>T||||||	GT:AD:DP:GQ:PL	0/1:5,4:9:72:72,0,94	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200708	.	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9983;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=1;MQRankSum=-2.100;QD=10.97;ReadPosRankSum=2.100;SOR=0.269;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-955A>G||||||	GT:AD:DP:GQ:PL	0/1:2,7:9:54:127,0,54	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	200718	.	T	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.55;MQ0=0;MQRankSum=-0.674;QD=8.75;ReadPosRankSum=0.524;SOR=0.223;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-965A>T||||||	GT:AD:DP:GQ:PL	0/1:2,3:5:51:72,0,51	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201066	.	T	A	88.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.66;SOR=1.981;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1313A>T||||||	GT:AD:DP:GQ:PL	1/1:0,5:5:9:116,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201067	.	T	A	98.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=24.57;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1314A>T||||||	GT:AD:DP:GQ:PL	1/1:0,4:5:9:126,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201095	.	T	G	117.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=19.51;SOR=2.303;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1342A>C||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:12:145,12,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201098	.	G	T	88.28	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=14.71;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1345C>A||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:9:116,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201196	.	G	T	103.28	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=14.75;SOR=0.941;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1443C>A||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:9:131,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201217	.	G	A	82.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=20.57;SOR=3.258;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1464C>T||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:110,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201249	.	A	T	68.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=17.07;SOR=3.258;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1496T>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:96,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201280	.	C	T	47.74	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=2;QD=9.55;SOR=2.833;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1527G>A||||||	GT:AD:DP:GQ:PL	1/1:2,3:5:6:75,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201295	.	A	G	12.77	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.11;MQ0=2;QD=3.19;SOR=2.303;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-1542T>C||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:3:39,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	201823	.	A	T	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=9.30;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-2070T>A||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204527	.	G	A	83.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=20.82;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-4774C>T||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:111,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204539	.	G	A	83.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=20.82;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-4786C>T||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:111,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204572	.	C	A	173.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=0;QD=24.84;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-4819G>T||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:202,15,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204601	.	A	G	183.9	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=20.43;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-4848T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:15:212,15,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204693	.	C	T	478.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.176;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.660;QD=26.60;ReadPosRankSum=1.544;SOR=0.395;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-4940G>A||||||	GT:AD:DP:GQ:PL	1/1:1,17:18:36:507,36,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204813	.	A	T	460.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.46;MQ0=2;MQRankSum=2.159;QD=17.73;ReadPosRankSum=-0.157;SOR=0.874;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5060T>A||||||	GT:AD:DP:GQ:PL	0/1:4,22:26:5:488,0,5	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204863	.	G	A	379.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=2;QD=23.74;SOR=1.765;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5110C>T||||||	GT:AD:DP:GQ:PL	1/1:2,14:16:30:408,30,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204877	.	T	A	96.28	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=1;QD=13.75;SOR=3.912;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5124A>T||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:9:124,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	204892	.	G	A	86.28	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=14.38;SOR=3.912;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5139C>T||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:9:114,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	205249	.	G	A	46.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=23.37;SOR=2.303;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5496C>T||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	205255	.	C	T	46.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=23.37;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5502G>A||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	205277	.	G	A	75.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=25.09;SOR=2.833;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5524C>T||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	205327	.	T	C	80.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=20.07;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5574A>G||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:108,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	205409	.	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DP=5;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.67;MQ0=0;MQRankSum=-1.645;QD=12.55;ReadPosRankSum=1.036;SOR=2.833;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5656G>A||||||	GT:AD:DP:GQ:PL	0/1:2,3:5:33:91,0,33	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	205440	.	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DP=5;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=38.67;MQ0=0;MQRankSum=-1.645;QD=11.75;ReadPosRankSum=1.036;SOR=2.833;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5687G>A||||||	GT:AD:DP:GQ:PL	0/1:2,3:5:33:87,0,33	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	205466	.	G	T	35.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=0;QD=17.87;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.223-5713C>A||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	207056	.	A	G	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.30;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+5244T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	207841	.	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=1.960;QD=13.30;ReadPosRankSum=-0.598;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+4459A>G||||||	GT:AD:DP:GQ:PL	0/1:3,3:6:29:108,0,29	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	207844	.	C	T	131.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=21.84;SOR=3.912;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+4456G>A||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:12:159,12,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	207897	.	C	A	152.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=39.73;MQ0=0;MQRankSum=2.100;QD=16.98;ReadPosRankSum=1.242;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+4403G>T||||||	GT:AD:DP:GQ:PL	0/1:3,6:9:23:181,0,23	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	208025	.	A	G	135.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=19.29;SOR=4.174;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+4275T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:12:163,12,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	208070	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=0;QD=5.22;SOR=2.833;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+4230A>G||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	208097	.	T	C	37.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.22;MQ0=1;QD=9.44;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+4203A>G||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:6:65,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	208285	.	C	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.02;MQ0=9;MQRankSum=0.875;QD=6.59;ReadPosRankSum=0.000;SOR=0.148;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+4015G>T||||||	GT:AD:DP:GQ:PL	0/1:9,11:20:38:160,0,38	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	208302	.	T	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=17.19;MQ0=11;MQRankSum=0.875;QD=5.31;ReadPosRankSum=0.447;SOR=0.148;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+3998A>C||||||	GT:AD:DP:GQ:PL	0/1:11,11:22:38:145,0,38	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	208561	.	C	A	15.65	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.24;MQ0=0;QD=5.22;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+3739G>T||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	208614	.	C	T	15.65	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.44;MQ0=0;QD=3.91;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+3686G>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209316	.	A	G	23.76	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=11.88;SOR=2.303;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2984T>C||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209322	.	A	T	23.76	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=11.88;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2978T>A||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209338	.	A	G	23.76	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.45;MQ0=1;QD=7.92;SOR=2.303;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2962T>C||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:51,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209351	.	A	G	104.03	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=1;QD=11.56;SOR=1.863;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2949T>C||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:12:132,12,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209434	.	A	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=29;Dels=0.00;ExcessHet=3.0103;FS=7.605;HaplotypeScore=6.7387;MLEAC=1;MLEAF=0.500;MQ=29.52;MQ0=5;MQRankSum=2.012;QD=2.85;ReadPosRankSum=1.717;SOR=0.525;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2866T>A||||||	GT:AD:DP:GQ:PL	0/1:22,7:29:99:111,0,358	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209440	.	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.671;HaplotypeScore=6.7387;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=5;MQRankSum=0.500;QD=2.12;ReadPosRankSum=-1.531;SOR=2.939;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2860C>T||||||	GT:AD:DP:GQ:PL	0/1:27,4:31:94:94,0,378	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209465	.	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.586;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=29.22;MQ0=6;MQRankSum=2.293;QD=2.24;ReadPosRankSum=-1.676;SOR=1.133;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2835G>A||||||	GT:AD:DP:GQ:PL	0/1:26,6:32:99:100,0,363	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209493	.	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=4.9929;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=5;MQRankSum=2.145;QD=10.02;ReadPosRankSum=2.375;SOR=0.695;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2807C>T||||||	GT:AD:DP:GQ:PL	0/1:15,18:33:98:359,0,98	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209513	.	A	G	396.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=5;QD=14.17;SOR=0.776;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2787T>C||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:33:425,33,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209518	.	G	T	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.957;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=27.64;MQ0=3;MQRankSum=0.107;QD=6.12;ReadPosRankSum=1.459;SOR=1.215;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2782C>A||||||	GT:AD:DP:GQ:PL	0/1:13,11:25:99:175,0,170	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	209591	.	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=19.88;MQ0=9;MQRankSum=1.834;QD=1.72;ReadPosRankSum=0.140;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2709G>A||||||	GT:AD:DP:GQ:PL	0/1:17,2:20:61:61,0,154	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210154	.	A	T	56.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=28.37;SOR=2.303;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2146T>A||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210170	.	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=1.834;QD=14.29;ReadPosRankSum=0.623;SOR=0.368;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2130G>A||||||	GT:AD:DP:GQ:PL	0/1:2,4:6:48:114,0,48	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210202	.	C	T	26.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.71;MQ0=0;MQRankSum=-1.383;QD=2.68;ReadPosRankSum=0.000;SOR=0.446;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2098G>A||||||	GT:AD:DP:GQ:PL	0/1:7,3:10:55:55,0,184	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210237	.	A	C	252.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=25.28;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2063T>G||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:21:281,21,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210275	.	T	C	221.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=24.65;SOR=0.892;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+2025A>G||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:18:250,18,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210302	.	A	G	234.84	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=21.35;SOR=0.859;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+1998T>C||||||	GT:AD:DP:GQ:PL	1/1:0,11:11:18:263,18,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210316	.	G	A	127.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=0;MQRankSum=0.366;QD=18.26;ReadPosRankSum=0.792;SOR=0.527;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+1984C>T||||||	GT:AD:DP:GQ:PL	0/1:1,6:7:17:156,0,17	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210319	.	A	G	175.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=25.13;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+1981T>C||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:15:204,15,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	210334	.	A	G	119.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=29.76;SOR=3.258;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+1966T>C||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:12:147,12,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	211788	.	T	C	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+512A>G||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	211790	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+510C>T||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	211798	.	A	G	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+502T>C||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	211864	.	A	G	46.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.79;MQ0=0;MQRankSum=-0.967;QD=15.60;ReadPosRankSum=-0.967;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+436T>C||||||	GT:AD:DP:GQ:PL	0/1:1,2:3:23:75,0,23	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	211899	.	T	G	169.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=-0.319;QD=21.22;ReadPosRankSum=-0.157;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+401A>C||||||	GT:AD:DP:GQ:PL	0/1:1,7:8:22:198,0,22	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212002	.	T	C	470.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=29.42;SOR=1.244;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+298A>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:499,36,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212055	.	A	C	399.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.56;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+245T>G||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:428,30,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212097	.	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.11;ReadPosRankSum=1.090;SOR=1.085;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+203G>A||||||	GT:AD:DP:GQ:PL	0/1:7,9:16:99:222,0,146	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212128	.	A	T	401.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.883;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.70;ReadPosRankSum=-0.373;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+172T>A||||||	GT:AD:DP:GQ:PL	1/1:1,13:14:30:430,30,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212143	.	C	G	350.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.23;SOR=1.981;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+157G>C||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:27:379,27,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212161	.	A	G	229.84	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.73;SOR=1.863;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+139T>C||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:18:258,18,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212192	.	A	T	185.9	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.98;SOR=1.329;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+108T>A||||||	GT:AD:DP:GQ:PL	1/1:0,6:6:15:214,15,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212219	.	A	G	93.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+81T>C||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:9:121,9,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212225	.	T	C	56.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+75A>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212226	.	T	C	56.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|2/2|c.222+74A>G||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212362	.	A	T	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.221-61T>A||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212411	.	T	C	59.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SOR=1.179;ANN=C|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.221-110A>G||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:87,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212485	.	A	T	62.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.69;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.221-184T>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:6:90,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212496	.	A	T	59.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.94;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.221-195T>A||||||	GT:AD:DP:GQ:PL	1/1:0,4:4:6:87,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212525	.	G	A	57.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;DP=4;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.44;ReadPosRankSum=-0.319;SOR=0.916;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.221-224C>T||||||	GT:AD:DP:GQ:PL	1/1:1,3:4:6:85,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212538	.	C	T	57.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.221-237G>A||||||	GT:AD:DP:GQ:PL	1/1:0,3:3:6:85,6,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212565	.	T	A	18.59	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.30;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.221-264A>T||||||	GT:AD:DP:GQ:PL	1/1:0,2:2:3:45,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212835	.	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.026;SOR=0.307;ANN=G|intron_variant|MODIFIER|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/2|c.220+72T>C||||||	GT:AD:DP:GQ:PL	0/1:6,4:10:71:71,0,154	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	212963	.	C	T	141.03	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.21;SOR=1.981;ANN=T|stop_gained|HIGH|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/3|c.164G>A|p.Trp55*|164/456|164/456|55/151||;LOF=(EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|1|1.00);NMD=(EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,5:5:12:169,12,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149564_cov62	213012	.	A	T	13.72	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.72;SOR=1.609;ANN=T|missense_variant|MODERATE|EXON_scaffold149564_cov62_199520_199753|GENE_EXON_scaffold149564_cov62_199520_199753|transcript|Soaet10008230|protein_coding|1/3|c.115T>A|p.Tyr39Asn|115/456|115/456|39/151||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0	scaffold149564_cov62	GLEAN	mRNA	199520	213126	1.00	-	.	ID=Soaet10008230
scaffold149601_cov61	3697	.	C	T	169.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-0.370;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_2197_2387|GENE_EXON_scaffold149601_cov61_2197_2387|transcript|Soaet10008494|protein_coding|1/8|c.192-652C>T||||||	GT:AD:DP:GQ:PL	0/1:2,8:10:27:198,0,27	scaffold149601_cov61	GLEAN	mRNA	2197	10226	0.76	+	.	ID=Soaet10008494
scaffold149601_cov61	7322	.	T	C	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.96;ReadPosRankSum=0.624;SOR=0.859;ANN=C|missense_variant|MODERATE|EXON_scaffold149601_cov61_2197_2387|GENE_EXON_scaffold149601_cov61_2197_2387|transcript|Soaet10008494|protein_coding|7/9|c.2384T>C|p.Leu795Ser|2384/3234|2384/3234|795/1077||	GT:AD:DP:GQ:PL	0/1:10,24:34:99:775,0,251	scaffold149601_cov61	GLEAN	mRNA	2197	10226	0.76	+	.	ID=Soaet10008494
scaffold149601_cov61	9789	.	T	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=9;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.20;ReadPosRankSum=0.000;SOR=2.833;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_2197_2387|GENE_EXON_scaffold149601_cov61_2197_2387|transcript|Soaet10008494|protein_coding|8/8|c.2938-141T>G||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,153	scaffold149601_cov61	GLEAN	mRNA	2197	10226	0.76	+	.	ID=Soaet10008494
scaffold149601_cov61	9848	.	T	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.52;ReadPosRankSum=0.542;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_2197_2387|GENE_EXON_scaffold149601_cov61_2197_2387|transcript|Soaet10008494|protein_coding|8/8|c.2938-82T>G||||||	GT:AD:DP:GQ:PL	0/1:4,7:11:99:221,0,137	scaffold149601_cov61	GLEAN	mRNA	2197	10226	0.76	+	.	ID=Soaet10008494
scaffold149601_cov61	26067	.	T	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.456;SOR=0.787;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_27272_27487|GENE_EXON_scaffold149601_cov61_27272_27487|transcript|Soaet10008496|protein_coding||c.*1205A>G|||||1205|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_25854_25891|GENE_EXON_scaffold149601_cov61_25854_25891|transcript|Soaet10008495|protein_coding|1/5|c.39-18T>C||||||	GT:AD:DP:GQ:PL	0/1:11,9:20:99:203,0,264	scaffold149601_cov61	GLEAN	mRNA	25854	29955	0.32	+	.	ID=Soaet10008495
scaffold149601_cov61	28450	.	A	G	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.384;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.24;ReadPosRankSum=0.144;SOR=1.207;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_27272_27487|GENE_EXON_scaffold149601_cov61_27272_27487|transcript|Soaet10008496|protein_coding||c.-963T>C|||||963|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding||c.*3583T>C|||||3583|,G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_25854_25891|GENE_EXON_scaffold149601_cov61_25854_25891|transcript|Soaet10008495|protein_coding|5/5|c.632+468A>G||||||	GT:AD:DP:GQ:PL	0/1:16,17:33:99:498,0,356	scaffold149601_cov61	GLEAN	mRNA	25854	29955	0.32	+	.	ID=Soaet10008495
scaffold149601_cov61	29169	.	G	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.449;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.53;ReadPosRankSum=-1.652;SOR=1.179;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_27272_27487|GENE_EXON_scaffold149601_cov61_27272_27487|transcript|Soaet10008496|protein_coding||c.-1682C>T|||||1682|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding||c.*2864C>T|||||2864|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_25854_25891|GENE_EXON_scaffold149601_cov61_25854_25891|transcript|Soaet10008495|protein_coding|5/5|c.633-639G>A||||||	GT:AD:DP:GQ:PL	0/1:12,18:30:99:584,0,349	scaffold149601_cov61	GLEAN	mRNA	25854	29955	0.32	+	.	ID=Soaet10008495
scaffold149601_cov61	29269	.	C	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.814;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.87;ReadPosRankSum=1.177;SOR=0.765;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_27272_27487|GENE_EXON_scaffold149601_cov61_27272_27487|transcript|Soaet10008496|protein_coding||c.-1782G>A|||||1782|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding||c.*2764G>A|||||2764|,T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_25854_25891|GENE_EXON_scaffold149601_cov61_25854_25891|transcript|Soaet10008495|protein_coding|5/5|c.633-539C>T||||||	GT:AD:DP:GQ:PL	0/1:17,23:40:99:623,0,540	scaffold149601_cov61	GLEAN	mRNA	25854	29955	0.32	+	.	ID=Soaet10008495
scaffold149601_cov61	36742	.	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-0.669;SOR=0.525;ANN=A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding|3/8|c.980-693C>T||||||	GT:AD:DP:GQ:PL	0/1:4,9:13:99:234,0,102	scaffold149601_cov61	GLEAN	mRNA	32033	40510	0.35	-	.	ID=Soaet10008497
scaffold149601_cov61	37474	.	G	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DP=20;Dels=0.00;ExcessHet=3.0103;FS=17.433;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.270;SOR=0.823;ANN=C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding|3/8|c.979+820C>G||||||	GT:AD:DP:GQ:PL	0/1:12,8:20:99:244,0,396	scaffold149601_cov61	GLEAN	mRNA	32033	40510	0.35	-	.	ID=Soaet10008497
scaffold149601_cov61	37621	.	C	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DP=28;Dels=0.00;ExcessHet=3.0103;FS=8.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.31;ReadPosRankSum=2.283;SOR=1.721;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding|3/8|c.979+673G>C||||||	GT:AD:DP:GQ:PL	0/1:17,11:28:99:289,0,592	scaffold149601_cov61	GLEAN	mRNA	32033	40510	0.35	-	.	ID=Soaet10008497
scaffold149601_cov61	38617	.	C	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.10;ReadPosRankSum=0.389;SOR=0.582;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_43188_44019|GENE_EXON_scaffold149601_cov61_43188_44019|transcript|Soaet10008498|protein_coding||c.*4571G>T|||||4571|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding|2/8|c.738-82G>T||||||	GT:AD:DP:GQ:PL	0/1:14,13:27:99:355,0,328	scaffold149601_cov61	GLEAN	mRNA	32033	40510	0.35	-	.	ID=Soaet10008497
scaffold149601_cov61	38650	.	CAGGG	C	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.84;RPA=2,1;RU=AGGG;ReadPosRankSum=1.025;SOR=0.627;STR;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_43188_44019|GENE_EXON_scaffold149601_cov61_43188_44019|transcript|Soaet10008498|protein_coding||c.*4534_*4537delCCCT|||||4537|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding|2/8|c.738-119_738-116delCCCT||||||	GT:AD:DP:GQ:PL	0/1:13,10:28:99:615,0,804	scaffold149601_cov61	GLEAN	mRNA	32033	40510	0.35	-	.	ID=Soaet10008497
scaffold149601_cov61	39046	.	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.11;ReadPosRankSum=0.307;SOR=0.693;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_43188_44019|GENE_EXON_scaffold149601_cov61_43188_44019|transcript|Soaet10008498|protein_coding||c.*4142T>C|||||4142|,G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding|2/8|c.738-511T>C||||||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:222,0,216	scaffold149601_cov61	GLEAN	mRNA	32033	40510	0.35	-	.	ID=Soaet10008497
scaffold149601_cov61	39379	.	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.271;SOR=0.976;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_43188_44019|GENE_EXON_scaffold149601_cov61_43188_44019|transcript|Soaet10008498|protein_coding||c.*3809G>A|||||3809|,T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding|2/8|c.737+305G>A||||||	GT:AD:DP:GQ:PL	0/1:16,14:30:99:333,0,374	scaffold149601_cov61	GLEAN	mRNA	32033	40510	0.35	-	.	ID=Soaet10008497
scaffold149601_cov61	45445	.	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.628;SOR=0.951;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_32033_32121|GENE_EXON_scaffold149601_cov61_32033_32121|transcript|Soaet10008497|protein_coding||c.-4935C>T|||||4935|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_43188_44019|GENE_EXON_scaffold149601_cov61_43188_44019|transcript|Soaet10008498|protein_coding|5/8|c.1509+379C>T||||||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:312,0,473	scaffold149601_cov61	GLEAN	mRNA	43188	48307	1.00	-	.	ID=Soaet10008498
scaffold149601_cov61	45659	.	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-1.344;SOR=0.665;ANN=C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_43188_44019|GENE_EXON_scaffold149601_cov61_43188_44019|transcript|Soaet10008498|protein_coding|5/8|c.1509+165A>G||||||	GT:AD:DP:GQ:PL	0/1:14,7:21:99:177,0,314	scaffold149601_cov61	GLEAN	mRNA	43188	48307	1.00	-	.	ID=Soaet10008498
scaffold149601_cov61	82424	.	A	G	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.832;SOR=1.270;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding||c.-3166A>G|||||3166|,G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_79307_79982|GENE_EXON_scaffold149601_cov61_79307_79982|transcript|Soaet10008502|protein_coding|2/2|c.1001-128A>G||||||	GT:AD:DP:GQ:PL	0/1:18,11:29:99:319,0,476	scaffold149601_cov61	GLEAN	mRNA	79307	83210	0.44	+	.	ID=Soaet10008502
scaffold149601_cov61	82518	.	C	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.486;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-0.063;SOR=1.571;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding||c.-3072C>A|||||3072|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_79307_79982|GENE_EXON_scaffold149601_cov61_79307_79982|transcript|Soaet10008502|protein_coding|2/2|c.1001-34C>A||||||	GT:AD:DP:GQ:PL	0/1:17,13:30:99:339,0,548	scaffold149601_cov61	GLEAN	mRNA	79307	83210	0.44	+	.	ID=Soaet10008502
scaffold149601_cov61	87618	.	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.452;HaplotypeScore=4.7739;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=2.406;QD=11.74;ReadPosRankSum=2.182;SOR=1.486;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_79307_79982|GENE_EXON_scaffold149601_cov61_79307_79982|transcript|Soaet10008502|protein_coding||c.*4408G>A|||||4408|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|3/10|c.232+1142G>A||||||	GT:AD:DP:GQ:PL	0/1:23,24:47:99:580,0,542	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	89093	.	T	TGAG	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;DP=22;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.31;RPA=1,2;RU=GAG;ReadPosRankSum=-0.792;SOR=1.179;STR;ANN=TGAG|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|3/10|c.233-509_233-508insGAG||||||	GT:AD:DP:GQ:PL	0/1:12,10:22:99:528,0,647	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	89344	.	C	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.213;SOR=1.230;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|3/10|c.233-258C>G||||||	GT:AD:DP:GQ:PL	0/1:14,4:18:99:121,0,333	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	90501	.	G	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.816;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-1.267;QD=8.35;ReadPosRankSum=-1.607;SOR=0.169;ANN=C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|4/10|c.303+829G>C||||||	GT:AD:DP:GQ:PL	0/1:18,10:28:99:262,0,488	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	90895	.	TGTCACTATTGTGAAAGAC	T	1643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.57;ReadPosRankSum=1.274;SOR=0.473;ANN=T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|4/10|c.304-988_304-971delGTCACTATTGTGAAAGAC||||||	GT:AD:DP:GQ:PL	0/1:6,8:14:99:1681,0,1039	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	91149	.	G	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.127;QD=9.72;ReadPosRankSum=1.108;SOR=1.341;ANN=T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|4/10|c.304-735G>T||||||	GT:AD:DP:GQ:PL	0/1:21,15:36:99:378,0,596	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	92032	.	G	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.09;ReadPosRankSum=-0.812;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|5/10|c.366+86G>T||||||	GT:AD:DP:GQ:PL	0/1:8,12:20:99:390,0,157	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	92205	.	G	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.598;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-1.090;SOR=0.946;ANN=C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|5/10|c.366+259G>C||||||	GT:AD:DP:GQ:PL	0/1:9,8:17:99:211,0,237	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	92314	.	AT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.36;RPA=13,12;RU=T;ReadPosRankSum=-0.851;SOR=0.582;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|5/10|c.366+369delT||||||	GT:AD:DP:GQ:PL	0/1:8,5:13:94:94,0,162	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	93172	.	A	G	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.164;SOR=0.330;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|5/10|c.366+1226A>G||||||	GT:AD:DP:GQ:PL	0/1:11,14:25:99:288,0,353	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	93297	.	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-0.676;SOR=1.061;ANN=A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|5/10|c.366+1351G>A||||||	GT:AD:DP:GQ:PL	0/1:7,8:15:99:214,0,207	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	93557	.	A	AAAAGAAGAGATAT	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.27;ReadPosRankSum=-0.055;SOR=0.412;ANN=AAAAGAAGAGATAT|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|5/10|c.367-1523_367-1522insAAAGAAGAGATAT||||||	GT:AD:DP:GQ:PL	0/1:10,6:16:99:888,0,1375	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	95738	.	ATT	A	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DP=27;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-0.754;QD=24.47;RPA=4,2;RU=T;ReadPosRankSum=0.814;SOR=1.035;STR;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding||c.-4944_-4943delTT|||||4944|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|7/10|c.477+404_477+405delTT||||||	GT:AD:DP:GQ:PL	0/1:11,16:27:99:698,0,476	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	96073	.	T	C	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.32;ReadPosRankSum=1.256;SOR=0.951;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding||c.-4610T>C|||||4610|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding|7/10|c.478-264T>C||||||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:280,0,409	scaffold149601_cov61	GLEAN	mRNA	85590	96828	0.43	+	.	ID=Soaet10008503
scaffold149601_cov61	100892	.	GT	G	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DP=20;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.74;RPA=2,1;RU=T;ReadPosRankSum=1.348;SOR=1.270;STR;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_85590_85648|GENE_EXON_scaffold149601_cov61_85590_85648|transcript|Soaet10008503|protein_coding||c.*4065delT|||||4065|,G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|1/9|c.7-17delT||||||	GT:AD:DP:GQ:PL	0/1:7,13:20:99:492,0,237	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	102896	.	G	GA	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.92;RPA=2,3;RU=A;ReadPosRankSum=0.000;SOR=0.560;STR;ANN=GA|intron_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|4/9|c.564+85_564+86insA||||||	GT:AD:DP:GQ:PL	0/1:3,13:16:74:468,0,74	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	103549	.	T	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.29;ReadPosRankSum=1.037;SOR=0.569;ANN=C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|5/9|c.649-16T>C||||||	GT:AD:DP:GQ:PL	0/1:16,11:27:99:252,0,419	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	103792	.	T	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=34;Dels=0.00;ExcessHet=3.0103;FS=10.970;HaplotypeScore=4.6551;MLEAC=1;MLEAF=0.500;MQ=60.32;MQ0=0;MQRankSum=0.896;QD=16.99;ReadPosRankSum=0.316;SOR=1.600;ANN=A|synonymous_variant|LOW|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|6/10|c.876T>A|p.Ile292Ile|876/1689|876/1689|292/562||	GT:AD:DP:GQ:PL	0/1:14,20:34:99:606,0,334	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	103901	.	C	CA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;DP=24;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=1.457;QD=8.46;RPA=11,12;RU=A;ReadPosRankSum=1.062;SOR=0.132;STR;ANN=CA|intron_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|6/9|c.921+64_921+65insA||||||	GT:AD:DP:GQ:PL	0/1:9,10:24:99:198,0,190	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	104319	.	C	A	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.09;ReadPosRankSum=0.771;SOR=0.793;ANN=A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|7/9|c.1043+22C>A||||||	GT:AD:DP:GQ:PL	0/1:12,19:31:99:558,0,270	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	104919	.	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.81;ReadPosRankSum=1.128;SOR=0.859;ANN=T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|8/9|c.1131+127C>T||||||	GT:AD:DP:GQ:PL	0/1:14,8:22:99:222,0,399	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	105403	.	T	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.648;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.97;ReadPosRankSum=0.059;SOR=1.037;ANN=C|synonymous_variant|LOW|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|9/10|c.1437T>C|p.Asn479Asn|1437/1689|1437/1689|479/562||	GT:AD:DP:GQ:PL	0/1:24,20:44:99:599,0,612	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	106260	.	C	CT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.17;RPA=11,12;RU=T;ReadPosRankSum=-0.234;SOR=0.743;STR;ANN=CT|intron_variant|MODIFIER|EXON_scaffold149601_cov61_100683_100688|GENE_EXON_scaffold149601_cov61_100683_100688|transcript|Soaet10008504|protein_coding|9/9|c.1574+720_1574+721insT||||||	GT:AD:DP:GQ:PL	0/1:13,9:22:99:173,0,289	scaffold149601_cov61	GLEAN	mRNA	100683	107345	0.61	+	.	ID=Soaet10008504
scaffold149601_cov61	122211	.	A	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.49;ReadPosRankSum=0.205;SOR=1.179;ANN=C|missense_variant|MODERATE|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|1/4|c.50A>C|p.His17Pro|50/936|50/936|17/311||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*3991T>G|||||3991|	GT:AD:DP:GQ:PL	0/1:14,8:22:99:171,0,422	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	122774	.	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.52;ReadPosRankSum=0.293;SOR=0.586;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*3428C>T|||||3428|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|1/3|c.461+152G>A||||||	GT:AD:DP:GQ:PL	0/1:10,7:17:99:139,0,266	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	122956	.	C	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DP=16;Dels=0.00;ExcessHet=3.0103;FS=1.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.361;SOR=1.329;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*3246G>A|||||3246|,T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|1/3|c.461+334C>T||||||	GT:AD:DP:GQ:PL	0/1:9,7:16:99:215,0,222	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	123168	.	T	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.000;SOR=0.160;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*3034A>T|||||3034|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|1/3|c.462-287T>A||||||	GT:AD:DP:GQ:PL	0/1:6,7:13:99:186,0,177	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	123805	.	T	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.682;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.19;ReadPosRankSum=2.000;SOR=1.152;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*2397A>T|||||2397|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|3/3|c.705+29T>A||||||	GT:AD:DP:GQ:PL	0/1:14,11:25:99:283,0,370	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	123918	.	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-0.159;SOR=0.818;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*2284C>T|||||2284|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|3/3|c.705+142G>A||||||	GT:AD:DP:GQ:PL	0/1:17,7:24:99:187,0,536	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	124003	.	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.99;ReadPosRankSum=1.579;SOR=0.569;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*2199C>T|||||2199|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|3/3|c.705+227G>A||||||	GT:AD:DP:GQ:PL	0/1:13,14:27:99:298,0,361	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	124095	.	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.52;ReadPosRankSum=0.438;SOR=0.846;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*2107C>T|||||2107|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|3/3|c.705+319G>A||||||	GT:AD:DP:GQ:PL	0/1:20,14:34:99:386,0,568	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	124825	.	T	TACATACAC	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.30;RPA=1,2;RU=ACATACAC;ReadPosRankSum=-0.782;SOR=0.693;STR;ANN=TACATACAC|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*1376_*1377insGTGTATGT|||||1376|,TACATACAC|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|3/3|c.706-143_706-142insACATACAC||||||	GT:AD:DP:GQ:PL	0/1:6,6:14:99:591,0,476	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	124875	.	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.001;SOR=0.693;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_126202_126543|GENE_EXON_scaffold149601_cov61_126202_126543|transcript|Soaet10008506|protein_coding||c.*1327C>T|||||1327|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_122162_122622|GENE_EXON_scaffold149601_cov61_122162_122622|transcript|Soaet10008505|protein_coding|3/3|c.706-93G>A||||||	GT:AD:DP:GQ:PL	0/1:7,7:14:99:192,0,105	scaffold149601_cov61	GLEAN	mRNA	122162	125198	0.53	+	.	ID=Soaet10008505
scaffold149601_cov61	153884	.	ACC	ACCC,A	394.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.758;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=55.95;MQ0=0;MQRankSum=0.000;QD=24.67;RPA=11,12,9;RU=C;ReadPosRankSum=0.869;SOR=0.412;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_152465_152669|GENE_EXON_scaffold149601_cov61_152465_152669|transcript|Soaet10008509|protein_coding|5/6|c.700-1065_700-1064delGG||||||,ACCC|intron_variant|MODIFIER|EXON_scaffold149601_cov61_152465_152669|GENE_EXON_scaffold149601_cov61_152465_152669|transcript|Soaet10008509|protein_coding|5/6|c.700-1066_700-1065insG||||||	GT:AD:DP:GQ:PL	1/2:1,7,8:20:99:432,292,349,162,0,295	scaffold149601_cov61	GLEAN	mRNA	152465	163872	0.95	-	.	ID=Soaet10008509
scaffold149601_cov61	154945	.	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.13;ReadPosRankSum=0.161;SOR=0.910;ANN=T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_152465_152669|GENE_EXON_scaffold149601_cov61_152465_152669|transcript|Soaet10008509|protein_coding|5/6|c.699+959G>A||||||	GT:AD:DP:GQ:PL	0/1:13,15:29:99:536,0,407	scaffold149601_cov61	GLEAN	mRNA	152465	163872	0.95	-	.	ID=Soaet10008509
scaffold149601_cov61	157690	.	T	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-1.470;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_152465_152669|GENE_EXON_scaffold149601_cov61_152465_152669|transcript|Soaet10008509|protein_coding|4/6|c.620-1707A>C||||||	GT:AD:DP:GQ:PL	0/1:10,9:20:99:209,0,225	scaffold149601_cov61	GLEAN	mRNA	152465	163872	0.95	-	.	ID=Soaet10008509
scaffold149601_cov61	159556	.	C	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.05;ReadPosRankSum=0.000;SOR=1.270;ANN=T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_152465_152669|GENE_EXON_scaffold149601_cov61_152465_152669|transcript|Soaet10008509|protein_coding|4/6|c.619+165G>A||||||	GT:AD:DP:GQ:PL	0/1:6,11:17:99:267,0,171	scaffold149601_cov61	GLEAN	mRNA	152465	163872	0.95	-	.	ID=Soaet10008509
scaffold149601_cov61	159691	.	GAT	G	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.03;ReadPosRankSum=-0.498;SOR=0.631;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_152465_152669|GENE_EXON_scaffold149601_cov61_152465_152669|transcript|Soaet10008509|protein_coding|4/6|c.619+28_619+29delAT||||||	GT:AD:DP:GQ:PL	0/1:9,12:23:99:542,0,407	scaffold149601_cov61	GLEAN	mRNA	152465	163872	0.95	-	.	ID=Soaet10008509
scaffold149601_cov61	161701	.	T	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.483;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=1.179;QD=13.65;ReadPosRankSum=-0.746;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_152465_152669|GENE_EXON_scaffold149601_cov61_152465_152669|transcript|Soaet10008509|protein_coding|3/6|c.504+1396A>T||||||	GT:AD:DP:GQ:PL	0/1:13,16:29:99:424,0,338	scaffold149601_cov61	GLEAN	mRNA	152465	163872	0.95	-	.	ID=Soaet10008509
scaffold149601_cov61	228046	.	A	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DP=24;Dels=0.00;ExcessHet=3.0103;FS=12.852;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-2.304;SOR=3.912;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding|9/14|c.734+119T>C||||||	GT:AD:DP:GQ:PL	0/1:18,6:24:99:194,0,490	scaffold149601_cov61	GLEAN	mRNA	226252	230512	0.66	-	.	ID=Soaet10008516
scaffold149601_cov61	228749	.	A	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.16;ReadPosRankSum=1.257;SOR=2.030;ANN=G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding|5/14|c.450-37T>C||||||	GT:AD:DP:GQ:PL	0/1:11,6:17:99:201,0,275	scaffold149601_cov61	GLEAN	mRNA	226252	230512	0.66	-	.	ID=Soaet10008516
scaffold149601_cov61	229179	.	G	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.18;ReadPosRankSum=0.586;SOR=0.818;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding||c.*4936C>G|||||4936|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding|3/14|c.310+42C>G||||||	GT:AD:DP:GQ:PL	0/1:12,15:27:99:411,0,348	scaffold149601_cov61	GLEAN	mRNA	226252	230512	0.66	-	.	ID=Soaet10008516
scaffold149601_cov61	229474	.	C	T	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=0.335;QD=21.78;ReadPosRankSum=-0.690;SOR=0.552;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding||c.*4641G>A|||||4641|,T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding|1/14|c.195-34G>A||||||	GT:AD:DP:GQ:PL	0/1:5,23:28:99:638,0,108	scaffold149601_cov61	GLEAN	mRNA	226252	230512	0.66	-	.	ID=Soaet10008516
scaffold149601_cov61	229502	.	CAT	C	815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=0.458;QD=29.13;ReadPosRankSum=1.748;SOR=0.644;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding||c.*4611_*4612delAT|||||4612|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding|1/14|c.195-64_195-63delAT||||||	GT:AD:DP:GQ:PL	0/1:9,19:28:99:853,0,388	scaffold149601_cov61	GLEAN	mRNA	226252	230512	0.66	-	.	ID=Soaet10008516
scaffold149601_cov61	229569	.	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-0.612;QD=15.78;ReadPosRankSum=-1.674;SOR=0.804;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding||c.*4546A>G|||||4546|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding|1/14|c.195-129A>G||||||	GT:AD:DP:GQ:PL	0/1:9,19:28:99:470,0,234	scaffold149601_cov61	GLEAN	mRNA	226252	230512	0.66	-	.	ID=Soaet10008516
scaffold149601_cov61	229941	.	C	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.862;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-1.619;SOR=0.796;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding||c.*4174G>C|||||4174|,G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding|1/14|c.194+378G>C||||||	GT:AD:DP:GQ:PL	0/1:9,17:26:99:461,0,207	scaffold149601_cov61	GLEAN	mRNA	226252	230512	0.66	-	.	ID=Soaet10008516
scaffold149601_cov61	234963	.	T	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.501;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-0.709;SOR=1.610;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding||c.-4451A>G|||||4451|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding|3/3|c.832-36A>G||||||	GT:AD:DP:GQ:PL	0/1:12,17:29:99:564,0,293	scaffold149601_cov61	GLEAN	mRNA	234115	237064	0.62	-	.	ID=Soaet10008517
scaffold149601_cov61	235099	.	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.849;SOR=0.732;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding||c.-4587T>C|||||4587|,G|intron_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding|3/3|c.832-172T>C||||||	GT:AD:DP:GQ:PL	0/1:16,9:25:99:261,0,494	scaffold149601_cov61	GLEAN	mRNA	234115	237064	0.62	-	.	ID=Soaet10008517
scaffold149601_cov61	235107	.	A	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=1.047;QD=7.81;ReadPosRankSum=1.796;SOR=0.694;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding||c.-4595T>A|||||4595|,T|intron_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding|3/3|c.832-180T>A||||||	GT:AD:DP:GQ:PL	0/1:19,9:28:99:247,0,534	scaffold149601_cov61	GLEAN	mRNA	234115	237064	0.62	-	.	ID=Soaet10008517
scaffold149601_cov61	235186	.	G	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.449;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=1.033;QD=12.51;ReadPosRankSum=-0.336;SOR=1.387;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding||c.-4674C>T|||||4674|,A|intron_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding|3/3|c.831+135C>T||||||	GT:AD:DP:GQ:PL	0/1:16,15:31:99:416,0,417	scaffold149601_cov61	GLEAN	mRNA	234115	237064	0.62	-	.	ID=Soaet10008517
scaffold149601_cov61	235204	.	G	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=30;Dels=0.00;ExcessHet=3.0103;FS=8.557;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-0.519;SOR=1.833;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding||c.-4692C>G|||||4692|,C|intron_variant|MODIFIER|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding|3/3|c.831+117C>G||||||	GT:AD:DP:GQ:PL	0/1:15,15:30:99:439,0,435	scaffold149601_cov61	GLEAN	mRNA	234115	237064	0.62	-	.	ID=Soaet10008517
scaffold149601_cov61	235420	.	G	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-1.057;SOR=0.804;ANN=A|synonymous_variant|LOW|EXON_scaffold149601_cov61_234115_234927|GENE_EXON_scaffold149601_cov61_234115_234927|transcript|Soaet10008517|protein_coding|3/4|c.732C>T|p.Ile244Ile|732/1644|732/1644|244/547||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149601_cov61_226252_226344|GENE_EXON_scaffold149601_cov61_226252_226344|transcript|Soaet10008516|protein_coding||c.-4908C>T|||||4908|	GT:AD:DP:GQ:PL	0/1:22,21:43:99:581,0,556	scaffold149601_cov61	GLEAN	mRNA	234115	237064	0.62	-	.	ID=Soaet10008517
scaffold149630_cov63	47893	.	G	A	673.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.91;SOR=0.693;ANN=A|missense_variant|MODERATE|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding|1/1|c.499G>A|p.Ala167Thr|499/1014|499/1014|167/337||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding||c.*3301C>T|||||3301|	GT:AD:DP:GQ:PL	1/1:0,26:26:51:702,51,0	scaffold149630_cov63	GLEAN	mRNA	47395	48408	0.99	+	.	ID=Soaet10008629
scaffold149630_cov63	51739	.	T	A	824.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=1.136;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*3331T>A|||||3331|,A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1078-150A>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:60:853,60,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	51815	.	C	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.741;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.954;SOR=1.349;ANN=A|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*3407C>A|||||3407|,A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1078-226G>T||||||	GT:AD:DP:GQ:PL	0/1:15,9:24:99:274,0,452	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	52323	.	T	C	721.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.07;SOR=1.802;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*3915T>C|||||3915|,C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1078-734A>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:54:750,54,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	52617	.	A	C	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.399;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.56;ReadPosRankSum=1.235;SOR=0.552;ANN=C|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*4209A>C|||||4209|,C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1077+990T>G||||||	GT:AD:DP:GQ:PL	0/1:12,23:35:99:713,0,299	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	53232	.	TACA	T	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.55;MQ0=0;MQRankSum=0.000;QD=22.29;RPA=5,4;RU=ACA;ReadPosRankSum=-0.417;SOR=0.693;STR;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*4825_*4827delACA|||||4825|,T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1077+372_1077+374delTGT||||||	GT:AD:DP:GQ:PL	0/1:10,10:24:99:483,0,483	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	53292	.	C	T	870.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SOR=0.859;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*4884C>T|||||4884|,T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1077+315G>A||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:66:899,66,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	53325	.	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.510;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=2;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.589;SOR=0.973;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*4917C>T|||||4917|,T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1077+282G>A||||||	GT:AD:DP:GQ:PL	0/1:16,15:31:99:476,0,424	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	53366	.	C	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=1;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.488;SOR=1.022;ANN=T|downstream_gene_variant|MODIFIER|EXON_scaffold149630_cov63_47395_48408|GENE_EXON_scaffold149630_cov63_47395_48408|transcript|Soaet10008629|protein_coding||c.*4958C>T|||||4958|,T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/6|c.1077+241G>A||||||	GT:AD:DP:GQ:PL	0/1:17,12:29:99:313,0,490	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	53911	.	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.566;SOR=0.566;ANN=A|missense_variant|MODERATE|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|6/7|c.773C>T|p.Pro258Leu|773/1473|773/1473|258/490||	GT:AD:DP:GQ:PL	0/1:17,9:26:99:303,0,488	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	54123	.	T	A	767.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.71;SOR=0.770;ANN=A|synonymous_variant|LOW|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|5/7|c.654A>T|p.Pro218Pro|654/1473|654/1473|218/490||	GT:AD:DP:GQ:PL	1/1:0,25:25:57:796,57,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	54333	.	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.485;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.441;SOR=1.071;ANN=T|synonymous_variant|LOW|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|5/7|c.444G>A|p.Ser148Ser|444/1473|444/1473|148/490||	GT:AD:DP:GQ:PL	0/1:18,13:31:99:305,0,550	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	55003	.	C	G	486.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.42;SOR=0.941;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|3/6|c.307-379G>C||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:36:515,36,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	55373	.	C	T	359.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.68;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|3/6|c.307-749G>A||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:27:388,27,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	55772	.	TCA	T	773.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.48;RPA=2,1;RU=CA;SOR=0.693;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|3/6|c.306+435_306+436delTG||||||	GT:AD:DP:GQ:PL	1/1:0,16:17:48:811,48,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	55876	.	A	T	679.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=33.58;SOR=1.292;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|3/6|c.306+333T>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:20:51:708,51,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	56298	.	T	C	732.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.53;SOR=1.051;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|2/6|c.241-24A>G||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:54:761,54,0	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	56970	.	C	T	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.05;ReadPosRankSum=2.565;SOR=0.757;ANN=T|missense_variant|MODERATE|EXON_scaffold149630_cov63_51194_51589|GENE_EXON_scaffold149630_cov63_51194_51589|transcript|Soaet10008630|protein_coding|1/7|c.52G>A|p.Val18Met|52/1473|52/1473|18/490||	GT:AD:DP:GQ:PL	0/1:17,22:39:99:693,0,418	scaffold149630_cov63	GLEAN	mRNA	51194	57021	1.00	-	.	ID=Soaet10008630
scaffold149630_cov63	236436	.	T	C	555.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.69;SOR=1.371;ANN=C|splice_region_variant&synonymous_variant|LOW|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/5|c.153T>C|p.Tyr51Tyr|153/348|153/348|51/115||	GT:AD:DP:GQ:PL	1/1:0,17:17:42:584,42,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	236585	.	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.288;SOR=0.892;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+149G>A||||||	GT:AD:DP:GQ:PL	0/1:17,12:30:99:309,0,454	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	236635	.	A	G	841.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=27.15;SOR=0.756;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+199A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:60:870,60,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	236805	.	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.238;QD=7.51;ReadPosRankSum=-0.296;SOR=0.631;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+369G>A||||||	GT:AD:DP:GQ:PL	0/1:12,7:19:99:171,0,358	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	236871	.	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQ0=0;MQRankSum=1.667;QD=12.28;ReadPosRankSum=-0.202;SOR=0.437;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+435A>G||||||	GT:AD:DP:GQ:PL	0/1:12,12:24:99:323,0,329	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	236882	.	T	C	638.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=29.03;SOR=1.085;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+446T>C||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:48:667,48,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	236911	.	A	G	528.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=33.05;SOR=1.244;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+475A>G||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:557,39,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237054	.	C	T	562.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.26;SOR=0.914;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+618C>T||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:42:591,42,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237256	.	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;DP=19;Dels=0.00;ExcessHet=3.0103;FS=12.420;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-0.941;SOR=3.246;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+820G>A||||||	GT:AD:DP:GQ:PL	0/1:9,10:19:99:314,0,283	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237269	.	GA	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=17;ExcessHet=3.0103;FS=8.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.86;RPA=7,6;RU=A;ReadPosRankSum=0.163;SOR=2.252;STR;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+834delA||||||	GT:AD:DP:GQ:PL	0/1:10,6:17:99:163,0,292	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237383	.	T	C	501.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.7748;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=29.52;SOR=1.061;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+947T>C||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:39:530,39,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237386	.	A	ATTGAAGTT	1087.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=33.99;RPA=2,3;RU=TTGAAGTT;SOR=1.022;STR;ANN=ATTGAAGTT|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+950_153+951insTTGAAGTT||||||	GT:AD:DP:GQ:PL	1/1:0,12:15:36:1125,36,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237411	.	G	A	356.78	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=1;QD=18.78;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+975G>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:27:385,27,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237479	.	A	G	421.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=2;QD=22.20;SOR=0.804;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1043A>G||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:33:450,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237530	.	G	T	416.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=1;QD=27.78;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1094G>T||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:33:445,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237554	.	G	A	477.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=1;QD=29.86;SOR=0.818;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1118G>A||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:506,39,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237556	.	A	G	454.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=1;QD=30.32;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1120A>G||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:36:483,36,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237607	.	T	C	567.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.538;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;MQRankSum=1.796;QD=28.39;ReadPosRankSum=1.217;SOR=0.264;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1171T>C||||||	GT:AD:DP:GQ:PL	1/1:1,19:20:42:596,42,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237649	.	T	A	441.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=44.39;MQ0=0;MQRankSum=1.048;QD=21.03;ReadPosRankSum=1.259;SOR=0.089;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1213T>A||||||	GT:AD:DP:GQ:PL	0/1:3,18:21:3:468,0,3	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237718	.	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5789;MLEAC=1;MLEAF=0.500;MQ=43.68;MQ0=2;MQRankSum=0.577;QD=10.16;ReadPosRankSum=-0.342;SOR=0.943;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1282G>A||||||	GT:AD:DP:GQ:PL	0/1:17,12:29:99:323,0,210	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237750	.	G	A	329.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3969;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=2;MQRankSum=2.841;QD=15.00;ReadPosRankSum=-0.436;SOR=0.608;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1314G>A||||||	GT:AD:DP:GQ:PL	0/1:9,13:22:15:358,0,15	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237827	.	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7820;MLEAC=1;MLEAF=0.500;MQ=56.21;MQ0=1;MQRankSum=1.083;QD=6.46;ReadPosRankSum=-0.453;SOR=0.836;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1391A>G||||||	GT:AD:DP:GQ:PL	0/1:12,5:17:99:138,0,258	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237828	.	G	A	358.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7820;MLEAC=1;MLEAF=0.500;MQ=56.21;MQ0=1;MQRankSum=4.002;QD=21.09;ReadPosRankSum=1.670;SOR=0.105;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1392G>A||||||	GT:AD:DP:GQ:PL	0/1:3,14:17:7:386,0,7	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237861	.	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=0.998;QD=11.06;ReadPosRankSum=-0.869;SOR=0.760;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1425C>T||||||	GT:AD:DP:GQ:PL	0/1:7,5:12:99:161,0,164	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237897	.	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.027;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=-1.175;QD=10.48;ReadPosRankSum=-2.188;SOR=1.329;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1461G>A||||||	GT:AD:DP:GQ:PL	0/1:8,6:14:99:175,0,206	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237905	.	A	G	424.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=30.34;SOR=0.976;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1469A>G||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:453,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237921	.	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-1.484;QD=7.05;ReadPosRankSum=-0.205;SOR=1.546;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1485G>A||||||	GT:AD:DP:GQ:PL	0/1:9,7:16:99:141,0,242	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	237962	.	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=0;MQRankSum=-0.592;QD=10.05;ReadPosRankSum=1.616;SOR=0.527;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1526G>A||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:99:179,0,220	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238015	.	G	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-1.335;QD=12.85;ReadPosRankSum=-0.507;SOR=0.941;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1579G>T||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:99:221,0,161	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238035	.	A	G	377.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=31.48;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1599A>G||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:30:406,30,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238095	.	A	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.632;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1659A>G||||||	GT:AD:DP:GQ:PL	0/1:6,9:15:99:192,0,147	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238194	.	A	G	423.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.60;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1758A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:33:452,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238251	.	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.242;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1815G>A||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:72:72,0,119	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238252	.	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.242;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1816G>A||||||	GT:AD:DP:GQ:PL	0/1:6,3:9:72:72,0,119	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238301	.	G	A	267.8	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.48;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1865G>A||||||	GT:AD:DP:GQ:PL	1/1:0,8:8:21:296,21,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238316	.	T	C	351.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=32.54;SOR=1.085;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1880T>C||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:27:380,27,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238325	.	T	A	354.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=31.53;SOR=1.085;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1889T>A||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:27:383,27,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238326	.	T	A	354.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=30.94;SOR=1.085;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1890T>A||||||	GT:AD:DP:GQ:PL	1/1:0,10:10:27:383,27,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238327	.	T	A	390.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=32.56;SOR=1.022;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1891T>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:30:419,30,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238389	.	C	A	525.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=23.90;SOR=1.085;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+1953C>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:39:554,39,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238816	.	C	T	601.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=31.67;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+2380C>T||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:45:630,45,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238843	.	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=0;MQRankSum=1.369;QD=6.23;ReadPosRankSum=1.728;SOR=0.716;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+2407T>C||||||	GT:AD:DP:GQ:PL	0/1:18,7:25:99:184,0,481	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	238864	.	A	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.916;HaplotypeScore=4.7473;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-4.081;QD=6.19;ReadPosRankSum=0.100;SOR=1.802;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.153+2428A>C||||||	GT:AD:DP:GQ:PL	0/1:18,13:31:99:220,0,551	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239029	.	A	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.33;MQ0=2;MQRankSum=-1.645;QD=2.19;ReadPosRankSum=-1.085;SOR=2.303;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2534A>C||||||	GT:AD:DP:GQ:PL	0/1:15,5:20:72:72,0,407	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239051	.	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=2;MQRankSum=0.846;QD=12.72;ReadPosRankSum=2.540;SOR=0.446;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2512C>T||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:95:219,0,95	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239069	.	A	G	211.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=1;QD=23.53;SOR=1.179;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2494A>G||||||	GT:AD:DP:GQ:PL	1/1:0,9:9:21:240,21,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239131	.	A	G	158.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9117;MLEAC=1;MLEAF=0.500;MQ=35.04;MQ0=2;MQRankSum=1.840;QD=10.59;ReadPosRankSum=0.075;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2432A>G||||||	GT:AD:DP:GQ:PL	0/1:6,9:15:27:187,0,27	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239419	.	G	A	15.65	.	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.65;SOR=1.609;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2144G>A||||||	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239455	.	A	G	260.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=31.13;SOR=4.174;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2108A>G||||||	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239486	.	C	G	440.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=33.91;SOR=2.833;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2077C>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:33:469,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239556	.	G	A	650.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=26.03;SOR=1.358;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2007G>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:48:679,48,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239650	.	C	T	827.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.11;SOR=0.770;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1913C>T||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:63:856,63,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239681	.	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=1.368;QD=20.82;ReadPosRankSum=0.818;SOR=1.033;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1882G>A||||||	GT:AD:DP:GQ:PL	0/1:7,11:18:99:403,0,189	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239684	.	A	G	702.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=30.96;SOR=0.793;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1879A>G||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:54:731,54,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239796	.	A	AT	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;DP=23;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=0.264;QD=12.12;RPA=8,9;RU=T;ReadPosRankSum=0.792;SOR=0.828;STR;ANN=AT|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1767_154-1766insT||||||	GT:AD:DP:GQ:PL	0/1:10,12:23:99:304,0,238	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239813	.	T	C	708.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=30.82;SOR=0.776;ANN=C|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1750T>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:54:737,54,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239820	.	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-0.121;QD=11.74;ReadPosRankSum=0.145;SOR=0.714;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1743C>T||||||	GT:AD:DP:GQ:PL	0/1:13,11:24:99:310,0,403	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239859	.	T	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.747;SOR=0.744;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1704T>A||||||	GT:AD:DP:GQ:PL	0/1:9,12:21:99:293,0,268	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239934	.	C	T	775.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=29.84;SOR=0.846;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1629C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:804,57,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	239978	.	A	G	779.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=28.88;SOR=1.101;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1585A>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:57:808,57,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240059	.	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.38;MQ0=0;MQRankSum=-0.342;QD=9.76;ReadPosRankSum=-1.439;SOR=0.859;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1504C>T||||||	GT:AD:DP:GQ:PL	0/1:13,9:22:99:243,0,377	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240099	.	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.076;QD=5.52;ReadPosRankSum=-0.049;SOR=0.941;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1464G>A||||||	GT:AD:DP:GQ:PL	0/1:10,7:17:99:122,0,292	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240138	.	G	A	375.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.91;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1425G>A||||||	GT:AD:DP:GQ:PL	1/1:0,13:14:30:404,30,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240166	.	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=1.9889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.908;SOR=0.595;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1397C>T||||||	GT:AD:DP:GQ:PL	0/1:4,7:11:99:151,0,102	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240181	.	G	A	320.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1382G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:27:349,27,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240291	.	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-0.719;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1272G>A||||||	GT:AD:DP:GQ:PL	0/1:8,8:16:99:178,0,175	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240323	.	T	A	416.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=29.77;SOR=0.976;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1240T>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:445,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240478	.	A	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=9;Dels=0.00;ExcessHet=3.0103;FS=13.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.31;ReadPosRankSum=-0.345;SOR=3.590;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-1085A>T||||||	GT:AD:DP:GQ:PL	0/1:4,5:9:99:184,0,142	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240686	.	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.70;ReadPosRankSum=-0.707;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-877G>A||||||	GT:AD:DP:GQ:PL	0/1:4,10:14:99:290,0,133	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240844	.	G	A	555.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=29.25;SOR=0.793;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-719G>A||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:42:584,42,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	240945	.	T	G	600.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.04;SOR=0.892;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-618T>G||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:629,45,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241012	.	AT	A	502.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.57;RPA=9,8;RU=T;SOR=1.061;STR;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-550delT||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:51:540,51,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241265	.	G	A	911.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.56;SOR=0.836;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-298G>A||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:940,69,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241280	.	A	G	675.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-283A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:51:704,51,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241320	.	A	G	842.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.10;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-243A>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:63:871,63,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241324	.	A	G	803.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.77;SOR=0.765;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-239A>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:60:832,60,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241330	.	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-0.702;SOR=1.021;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-233G>A||||||	GT:AD:DP:GQ:PL	0/1:11,15:26:99:339,0,323	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241334	.	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.521;SOR=0.676;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-229G>A||||||	GT:AD:DP:GQ:PL	0/1:14,11:25:99:318,0,330	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241360	.	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-0.420;SOR=1.164;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-203G>A||||||	GT:AD:DP:GQ:PL	0/1:11,16:27:99:408,0,262	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241443	.	A	G	734.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=1;QD=27.21;SOR=1.022;ANN=G|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-120A>G||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:57:763,57,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241491	.	C	T	774.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=29.80;SOR=0.846;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-72C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:803,60,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241561	.	G	A	737.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.38;SOR=1.220;ANN=A|splice_acceptor_variant&intron_variant|HIGH|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|2/4|c.154-2G>A||||||;LOF=(EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,26:26:54:766,54,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241588	.	A	G	955.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.87;SOR=0.818;ANN=G|missense_variant|MODERATE|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|3/5|c.179A>G|p.Asp60Gly|179/348|179/348|60/115||	GT:AD:DP:GQ:PL	1/1:0,32:32:69:984,69,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241766	.	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.16;ReadPosRankSum=0.748;SOR=0.883;ANN=T|splice_region_variant&intron_variant|LOW|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|4/4|c.237+5C>T||||||	GT:AD:DP:GQ:PL	0/1:9,15:24:99:392,0,244	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241858	.	G	A	510.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.74;SOR=1.329;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|4/4|c.237+97G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:39:539,39,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241896	.	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.05;ReadPosRankSum=-0.126;SOR=1.179;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|4/4|c.237+135C>T||||||	GT:AD:DP:GQ:PL	0/1:6,8:14:99:253,0,206	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241961	.	T	A	433.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.11;SOR=1.244;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|4/4|c.238-147T>A||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:33:462,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241979	.	G	A	439.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.41;SOR=0.976;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|4/4|c.238-129G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:468,33,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	241983	.	C	T	395.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.27;SOR=0.976;ANN=T|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|4/4|c.238-125C>T||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:30:424,30,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	242036	.	G	A	637.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.99;SOR=1.085;ANN=A|intron_variant|MODIFIER|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|4/4|c.238-72G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:48:666,48,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149630_cov63	242120	.	C	T	789.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.38;SOR=1.022;ANN=T|missense_variant|MODERATE|EXON_scaffold149630_cov63_236265_236411|GENE_EXON_scaffold149630_cov63_236265_236411|transcript|Soaet10008631|protein_coding|5/5|c.250C>T|p.Pro84Ser|250/348|250/348|84/115||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:818,57,0	scaffold149630_cov63	GLEAN	mRNA	236265	242218	0.23	+	.	ID=Soaet10008631
scaffold149685_cov71	1917	.	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=0.696;QD=5.73;ReadPosRankSum=-0.209;SOR=0.536;ANN=G|synonymous_variant|LOW|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|3/3|c.567T>C|p.Ala189Ala|567/600|567/600|189/199||	GT:AD:DP:GQ:PL	0/1:27,11:38:99:246,0,853	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2191	.	C	T	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-0.810;QD=14.91;ReadPosRankSum=-0.069;SOR=1.038;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-14G>A||||||	GT:AD:DP:GQ:PL	0/1:19,26:45:99:699,0,500	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2264	.	T	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.309;HaplotypeScore=12.3114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.74;ReadPosRankSum=-0.390;SOR=1.106;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-87A>T||||||	GT:AD:DP:GQ:PL	0/1:15,24:39:99:681,0,361	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2293	.	T	C	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.309;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.11;ReadPosRankSum=2.502;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-116A>G||||||	GT:AD:DP:GQ:PL	0/1:16,19:35:99:557,0,453	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2327	.	C	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.445;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=1;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-1.131;SOR=1.085;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-150G>A||||||	GT:AD:DP:GQ:PL	0/1:26,11:37:99:290,0,801	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2358	.	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DP=40;Dels=0.00;ExcessHet=3.0103;FS=10.818;HaplotypeScore=7.4027;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=1;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.062;SOR=2.250;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-181G>A||||||	GT:AD:DP:GQ:PL	0/1:33,6:40:99:115,0,930	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2375	.	C	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.108;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.28;ReadPosRankSum=-0.396;SOR=0.944;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-198G>T||||||	GT:AD:DP:GQ:PL	0/1:12,27:39:99:741,0,264	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2398	.	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.996;HaplotypeScore=8.1157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.82;ReadPosRankSum=1.139;SOR=1.445;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-221G>A||||||	GT:AD:DP:GQ:PL	0/1:34,12:46:99:250,0,917	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2437	.	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;DP=50;Dels=0.00;ExcessHet=3.0103;FS=5.189;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.609;QD=3.52;ReadPosRankSum=-0.318;SOR=1.304;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-260G>A||||||	GT:AD:DP:GQ:PL	0/1:38,12:50:99:204,0,1082	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2497	.	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.673;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.47;ReadPosRankSum=0.506;SOR=1.235;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-320A>G||||||	GT:AD:DP:GQ:PL	0/1:27,17:45:99:489,0,715	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2516	.	T	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.204;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-1.347;SOR=0.928;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-339A>G||||||	GT:AD:DP:GQ:PL	0/1:21,21:42:99:608,0,537	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2527	.	C	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.247;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.99;ReadPosRankSum=-1.360;SOR=1.085;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-350G>A||||||	GT:AD:DP:GQ:PL	0/1:18,22:40:99:748,0,454	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2569	.	C	T	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.242;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.42;ReadPosRankSum=0.285;SOR=0.679;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-392G>A||||||	GT:AD:DP:GQ:PL	0/1:16,26:42:99:760,0,381	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2588	.	T	A	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.525;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.279;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.71;ReadPosRankSum=2.124;SOR=0.399;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-411A>T||||||	GT:AD:DP:GQ:PL	0/1:15,24:39:99:719,0,341	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2589	.	T	A	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.294;HaplotypeScore=1.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.61;ReadPosRankSum=2.124;SOR=0.399;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-412A>T||||||	GT:AD:DP:GQ:PL	0/1:15,24:39:99:715,0,338	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2590	.	T	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.279;HaplotypeScore=2.8233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.81;ReadPosRankSum=2.166;SOR=0.399;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-413A>G||||||	GT:AD:DP:GQ:PL	0/1:15,24:39:99:723,0,345	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2611	.	C	T	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.10;ReadPosRankSum=0.078;SOR=0.631;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-434G>A||||||	GT:AD:DP:GQ:PL	0/1:11,28:39:99:734,0,260	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2660	.	A	G	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.61;ReadPosRankSum=-0.722;SOR=1.101;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-483T>C||||||	GT:AD:DP:GQ:PL	0/1:9,25:34:99:661,0,238	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2696	.	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.30;ReadPosRankSum=1.489;SOR=0.818;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-519G>A||||||	GT:AD:DP:GQ:PL	0/1:23,10:33:99:236,0,665	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2722	.	G	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.247;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.68;ReadPosRankSum=1.516;SOR=1.402;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-545C>A||||||	GT:AD:DP:GQ:PL	0/1:13,19:32:99:530,0,303	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2726	.	T	C	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.247;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.49;ReadPosRankSum=1.555;SOR=1.402;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-549A>G||||||	GT:AD:DP:GQ:PL	0/1:13,19:32:99:588,0,257	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2739	.	G	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;DP=31;Dels=0.00;ExcessHet=3.0103;FS=7.076;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.355;SOR=2.584;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-562C>A||||||	GT:AD:DP:GQ:PL	0/1:24,7:31:99:163,0,656	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2771	.	A	T	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-1.102;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-594T>A||||||	GT:AD:DP:GQ:PL	0/1:12,18:30:99:426,0,252	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2841	.	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.573;HaplotypeScore=9.9131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.482;SOR=1.284;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-664C>T||||||	GT:AD:DP:GQ:PL	0/1:23,9:32:99:223,0,609	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2845	.	G	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.440;HaplotypeScore=9.9131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.526;SOR=0.392;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-668C>A||||||	GT:AD:DP:GQ:PL	0/1:20,12:32:99:229,0,578	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2918	.	A	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.710;HaplotypeScore=3.8296;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=1;MQRankSum=0.901;QD=3.94;ReadPosRankSum=-1.087;SOR=1.414;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-741T>G||||||	GT:AD:DP:GQ:PL	0/1:31,7:38:99:178,0,776	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2932	.	A	G	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.8209;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=1;MQRankSum=2.773;QD=17.47;ReadPosRankSum=0.715;SOR=0.527;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-755T>C||||||	GT:AD:DP:GQ:PL	0/1:12,26:38:99:692,0,265	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2940	.	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.421;HaplotypeScore=18.9915;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=1.324;QD=6.79;ReadPosRankSum=-1.410;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-763C>T||||||	GT:AD:DP:GQ:PL	0/1:23,12:35:99:266,0,645	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2941	.	G	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=18.9915;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-0.849;QD=19.56;ReadPosRankSum=1.363;SOR=0.283;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-764C>T||||||	GT:AD:DP:GQ:PL	0/1:7,28:35:99:713,0,211	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	2967	.	T	C	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;DP=35;Dels=0.00;ExcessHet=3.0103;FS=12.594;HaplotypeScore=16.4449;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-0.607;QD=15.71;ReadPosRankSum=0.448;SOR=0.039;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-790A>G||||||	GT:AD:DP:GQ:PL	0/1:10,22:35:99:531,0,342	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3023	.	T	TTTGAGGAGAGTTC	2113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=45;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=58.15;MQ0=0;MQRankSum=0.881;QD=13.18;RPA=1,2;RU=TTGAGGAGAGTTC;ReadPosRankSum=0.170;SOR=0.999;STR;ANN=TTTGAGGAGAGTTC|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-847_307-846insGAACTCTCCTCAA||||||	GT:AD:DP:GQ:PL	0/1:22,15:43:99:2151,0,2854	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3066	.	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=1;MQRankSum=0.000;QD=12.75;ReadPosRankSum=0.256;SOR=0.846;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-889G>A||||||	GT:AD:DP:GQ:PL	0/1:26,27:53:99:704,0,594	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3085	.	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.054;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-0.320;SOR=0.446;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-908A>G||||||	GT:AD:DP:GQ:PL	0/1:26,28:54:99:710,0,628	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3099	.	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.150;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.708;SOR=0.446;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-922C>T||||||	GT:AD:DP:GQ:PL	0/1:40,16:56:99:390,0,997	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3146	.	C	T	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.99;ReadPosRankSum=1.958;SOR=0.804;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-969G>A||||||	GT:AD:DP:GQ:PL	0/1:18,22:40:99:628,0,522	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3292	.	T	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.881;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-0.514;QD=24.79;ReadPosRankSum=-0.201;SOR=0.346;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1115A>T||||||	GT:AD:DP:GQ:PL	0/1:6,39:45:99:1144,0,108	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3339	.	A	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-0.271;SOR=0.542;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1162T>A||||||	GT:AD:DP:GQ:PL	0/1:45,16:61:99:390,0,1348	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3404	.	T	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.00;ReadPosRankSum=-0.443;SOR=0.776;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1227A>G||||||	GT:AD:DP:GQ:PL	0/1:52,23:75:99:553,0,1492	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3413	.	G	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.6512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.92;ReadPosRankSum=0.098;SOR=0.700;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1236C>A||||||	GT:AD:DP:GQ:PL	0/1:48,21:69:99:506,0,1439	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3418	.	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DP=72;Dels=0.00;ExcessHet=3.0103;FS=9.061;HaplotypeScore=17.5587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.304;SOR=1.516;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1241C>T||||||	GT:AD:DP:GQ:PL	0/1:59,13:72:99:195,0,1871	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3425	.	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.971;HaplotypeScore=16.6428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.96;ReadPosRankSum=0.816;SOR=0.815;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1248C>T||||||	GT:AD:DP:GQ:PL	0/1:52,22:74:99:543,0,1541	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3429	.	T	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.419;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.61;ReadPosRankSum=1.906;SOR=0.590;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1252A>G||||||	GT:AD:DP:GQ:PL	0/1:53,20:73:99:511,0,1575	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3458	.	C	G	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.878;HaplotypeScore=30.8490;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=1;MQRankSum=-1.295;QD=16.27;ReadPosRankSum=0.700;SOR=0.518;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1281G>C||||||	GT:AD:DP:GQ:PL	0/1:29,53:82:99:1362,0,783	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3463	.	T	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=31.6377;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=1;MQRankSum=1.221;QD=6.79;ReadPosRankSum=-0.139;SOR=0.913;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1286A>G||||||	GT:AD:DP:GQ:PL	0/1:54,25:80:99:565,0,1478	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3484	.	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.902;HaplotypeScore=5.0717;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=1;MQRankSum=-2.398;QD=6.81;ReadPosRankSum=-0.243;SOR=0.693;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1307A>G||||||	GT:AD:DP:GQ:PL	0/1:53,29:82:99:587,0,1487	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3543	.	T	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;DP=80;Dels=0.00;ExcessHet=3.0103;FS=7.900;HaplotypeScore=37.7590;MLEAC=1;MLEAF=0.500;MQ=56.75;MQ0=1;MQRankSum=1.680;QD=4.75;ReadPosRankSum=1.265;SOR=1.903;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1366A>T||||||	GT:AD:DP:GQ:PL	0/1:61,17:80:99:399,0,1606	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3583	.	G	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.391;HaplotypeScore=14.0489;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=1.568;QD=3.66;ReadPosRankSum=-1.107;SOR=1.600;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1406C>T||||||	GT:AD:DP:GQ:PL	0/1:62,15:77:99:310,0,1526	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3605	.	A	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DP=66;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=9.0241;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=-4.190;QD=4.51;ReadPosRankSum=-0.956;SOR=1.161;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1428T>C||||||	GT:AD:DP:GQ:PL	0/1:46,20:66:99:326,0,1387	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3661	.	A	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4098;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=0.715;QD=2.88;ReadPosRankSum=0.724;SOR=0.465;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1484T>G||||||	GT:AD:DP:GQ:PL	0/1:44,10:55:99:184,0,1184	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3752	.	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.5503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.071;SOR=1.467;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1575C>T||||||	GT:AD:DP:GQ:PL	0/1:42,7:49:80:80,0,1267	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3754	.	A	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.663;HaplotypeScore=12.5503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.030;SOR=1.316;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1577T>A||||||	GT:AD:DP:GQ:PL	0/1:40,7:48:99:130,0,1142	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3807	.	A	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4516;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=-2.074;QD=3.12;ReadPosRankSum=-0.317;SOR=0.502;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1630T>C||||||	GT:AD:DP:GQ:PL	0/1:45,10:55:99:200,0,1283	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3831	.	A	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7043;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=0.521;QD=2.76;ReadPosRankSum=0.758;SOR=0.737;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1654T>A||||||	GT:AD:DP:GQ:PL	0/1:41,9:50:99:166,0,1182	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3869	.	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=74.3726;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=1.125;QD=15.14;ReadPosRankSum=0.746;SOR=0.425;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1692T>C||||||	GT:AD:DP:GQ:PL	0/1:19,22:41:99:649,0,544	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3872	.	C	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=44.2568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.29;ReadPosRankSum=0.578;SOR=0.420;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1695G>A||||||	GT:AD:DP:GQ:PL	0/1:18,23:41:99:655,0,508	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3891	.	A	G	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.26;ReadPosRankSum=-0.615;SOR=0.770;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1714T>C||||||	GT:AD:DP:GQ:PL	0/1:16,25:41:99:777,0,442	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3900	.	C	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=2.8309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.15;ReadPosRankSum=-1.410;SOR=0.488;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1723G>A||||||	GT:AD:DP:GQ:PL	0/1:15,30:45:99:890,0,415	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3925	.	T	A	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-0.660;SOR=0.650;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1748A>T||||||	GT:AD:DP:GQ:PL	0/1:14,27:41:99:782,0,352	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3931	.	T	C	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.184;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.57;ReadPosRankSum=0.454;SOR=1.004;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1754A>G||||||	GT:AD:DP:GQ:PL	0/1:17,30:47:99:854,0,460	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3961	.	G	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=1.238;QD=14.19;ReadPosRankSum=2.291;SOR=0.743;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1784C>T||||||	GT:AD:DP:GQ:PL	0/1:17,24:41:99:610,0,452	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	3987	.	C	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.785;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=1.101;QD=11.07;ReadPosRankSum=0.000;SOR=0.352;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1810G>A||||||	GT:AD:DP:GQ:PL	0/1:19,21:41:99:471,0,553	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4023	.	T	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.19;ReadPosRankSum=-1.079;SOR=0.902;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1846A>T||||||	GT:AD:DP:GQ:PL	0/1:14,21:39:99:560,0,306	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4028	.	C	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.316;HaplotypeScore=3.9154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-1.242;SOR=0.473;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1851G>T||||||	GT:AD:DP:GQ:PL	0/1:16,21:37:99:538,0,465	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4039	.	C	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.425;SOR=1.179;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1862G>T||||||	GT:AD:DP:GQ:PL	0/1:30,5:35:79:79,0,818	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4050	.	A	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.719;SOR=0.656;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1873T>C||||||	GT:AD:DP:GQ:PL	0/1:13,20:33:99:531,0,329	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4080	.	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.049;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.034;SOR=1.244;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1903C>T||||||	GT:AD:DP:GQ:PL	0/1:23,4:27:96:96,0,664	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4148	.	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.2142;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=0.660;QD=3.28;ReadPosRankSum=0.505;SOR=0.839;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1971G>A||||||	GT:AD:DP:GQ:PL	0/1:21,7:28:99:120,0,500	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4153	.	A	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.471;HaplotypeScore=17.1301;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=1.003;QD=9.53;ReadPosRankSum=-0.309;SOR=1.022;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1976T>A||||||	GT:AD:DP:GQ:PL	0/1:14,12:26:99:276,0,271	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4157	.	C	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.0460;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=2.147;QD=19.53;ReadPosRankSum=0.293;SOR=0.812;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-1980G>T||||||	GT:AD:DP:GQ:PL	0/1:5,21:26:96:536,0,96	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4225	.	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.86;ReadPosRankSum=1.151;SOR=0.566;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-2048A>G||||||	GT:AD:DP:GQ:PL	0/1:16,21:37:99:504,0,358	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4271	.	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=-1.608;QD=4.39;ReadPosRankSum=-0.013;SOR=0.536;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-2094A>G||||||	GT:AD:DP:GQ:PL	0/1:33,12:45:99:226,0,1023	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4329	.	C	T	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;DP=51;Dels=0.00;ExcessHet=3.0103;FS=6.304;HaplotypeScore=7.4925;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.666;QD=20.33;ReadPosRankSum=1.179;SOR=1.098;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-2152G>A||||||	GT:AD:DP:GQ:PL	0/1:17,34:51:99:1065,0,312	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4330	.	T	A	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.112;HaplotypeScore=7.4925;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.687;QD=20.98;ReadPosRankSum=0.924;SOR=0.967;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-2153A>T||||||	GT:AD:DP:GQ:PL	0/1:18,34:52:99:1119,0,317	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4356	.	A	G	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.145;HaplotypeScore=6.5683;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.614;QD=19.21;ReadPosRankSum=0.279;SOR=0.836;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-2179T>C||||||	GT:AD:DP:GQ:PL	0/1:17,40:57:99:1123,0,376	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4358	.	A	C	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.572;HaplotypeScore=6.5683;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.614;QD=19.75;ReadPosRankSum=0.262;SOR=0.836;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.307-2181T>G||||||	GT:AD:DP:GQ:PL	0/1:17,40:57:99:1154,0,344	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4401	.	T	G	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.599;HaplotypeScore=6.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.58;ReadPosRankSum=-0.346;SOR=0.586;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+2205A>C||||||	GT:AD:DP:GQ:PL	0/1:15,43:58:99:1164,0,270	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4504	.	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.156;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-1.353;SOR=0.837;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+2102G>A||||||	GT:AD:DP:GQ:PL	0/1:39,16:55:99:343,0,1192	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4558	.	A	C	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.841;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.585;SOR=0.334;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+2048T>G||||||	GT:AD:DP:GQ:PL	0/1:25,27:52:99:692,0,697	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4569	.	G	A	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.881;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.29;ReadPosRankSum=2.243;SOR=0.223;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+2037C>T||||||	GT:AD:DP:GQ:PL	0/1:25,26:51:99:604,0,734	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4592	.	A	G	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.929;QD=13.19;ReadPosRankSum=1.099;SOR=0.818;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+2014T>C||||||	GT:AD:DP:GQ:PL	0/1:27,29:56:99:767,0,536	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4621	.	T	C	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=56;Dels=0.00;ExcessHet=3.0103;FS=5.471;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-1.351;QD=12.26;ReadPosRankSum=-1.477;SOR=0.347;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1985A>G||||||	GT:AD:DP:GQ:PL	0/1:27,29:56:99:715,0,792	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4827	.	A	G	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.437;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-0.492;SOR=0.540;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1779T>C||||||	GT:AD:DP:GQ:PL	0/1:39,43:82:99:1310,0,956	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4884	.	G	A	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.805;HaplotypeScore=5.5767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.187;SOR=0.582;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1722C>T||||||	GT:AD:DP:GQ:PL	0/1:45,42:88:99:1092,0,1220	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4910	.	T	C	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.048;SOR=0.765;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1696A>G||||||	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1074,0,1161	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	4938	.	G	A	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.69;ReadPosRankSum=1.554;SOR=0.859;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1668C>T||||||	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1092,0,1417	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5007	.	A	G	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-0.308;SOR=0.693;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1599T>C||||||	GT:AD:DP:GQ:PL	0/1:33,33:66:99:914,0,962	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5018	.	A	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.444;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-0.205;SOR=0.968;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1588T>C||||||	GT:AD:DP:GQ:PL	0/1:17,45:62:99:1360,0,378	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5068	.	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.434;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.332;SOR=0.721;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1538T>C||||||	GT:AD:DP:GQ:PL	0/1:27,22:49:99:503,0,731	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5103	.	C	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=7.4084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.863;SOR=0.438;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1503G>A||||||	GT:AD:DP:GQ:PL	0/1:22,21:43:99:521,0,708	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5175	.	A	G	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.97;ReadPosRankSum=1.962;SOR=0.595;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1431T>C||||||	GT:AD:DP:GQ:PL	0/1:16,27:43:99:672,0,470	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5207	.	G	A	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.71;ReadPosRankSum=-0.134;SOR=0.693;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1399C>T||||||	GT:AD:DP:GQ:PL	0/1:14,28:42:99:814,0,398	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5212	.	G	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.1134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.77;ReadPosRankSum=0.477;SOR=0.569;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1394C>T||||||	GT:AD:DP:GQ:PL	0/1:13,28:41:99:716,0,344	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5223	.	A	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DP=34;Dels=0.03;ExcessHet=3.0103;FS=1.377;HaplotypeScore=41.0509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.96;ReadPosRankSum=0.922;SOR=0.791;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1383T>A||||||	GT:AD:DP:GQ:PL	0/1:13,20:33:99:522,0,353	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5224	.	A	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=42.0508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.22;ReadPosRankSum=1.794;SOR=0.704;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1382T>A||||||	GT:AD:DP:GQ:PL	0/1:22,13:35:99:281,0,598	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5225	.	A	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=43.0507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.10;ReadPosRankSum=1.526;SOR=0.540;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1381T>A||||||	GT:AD:DP:GQ:PL	0/1:22,14:36:99:284,0,564	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5226	.	A	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.366;HaplotypeScore=43.0507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.60;ReadPosRankSum=1.829;SOR=0.654;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1380T>A||||||	GT:AD:DP:GQ:PL	0/1:23,13:36:99:338,0,588	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5232	.	A	G	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.323;HaplotypeScore=25.6515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-0.080;SOR=0.755;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1374T>C||||||	GT:AD:DP:GQ:PL	0/1:13,24:37:99:621,0,331	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5278	.	G	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=9.2344;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=1.109;QD=12.51;ReadPosRankSum=-1.301;SOR=1.551;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1328C>A||||||	GT:AD:DP:GQ:PL	0/1:22,25:47:99:616,0,617	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5303	.	C	T	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.8054;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=1.432;QD=17.08;ReadPosRankSum=1.257;SOR=0.684;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1303G>A||||||	GT:AD:DP:GQ:PL	0/1:20,39:59:99:1036,0,574	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5326	.	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.807;HaplotypeScore=11.9821;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=0.573;QD=3.49;ReadPosRankSum=-0.540;SOR=0.331;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1280G>A||||||	GT:AD:DP:GQ:PL	0/1:46,13:59:99:234,0,1270	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5354	.	C	G	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5708;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=1.189;QD=14.25;ReadPosRankSum=1.030;SOR=0.678;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1252G>C||||||	GT:AD:DP:GQ:PL	0/1:29,39:68:99:997,0,711	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5417	.	A	C	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4091;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.449;QD=22.50;ReadPosRankSum=-0.304;SOR=0.600;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1189T>G||||||	GT:AD:DP:GQ:PL	0/1:13,55:68:99:1558,0,241	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5458	.	T	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.511;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=1.016;QD=14.08;ReadPosRankSum=-0.179;SOR=1.230;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1148A>G||||||	GT:AD:DP:GQ:PL	0/1:32,31:63:99:915,0,941	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5516	.	T	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.815;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=0.579;QD=4.11;ReadPosRankSum=0.031;SOR=1.528;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1090A>T||||||	GT:AD:DP:GQ:PL	0/1:42,12:54:99:250,0,1269	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5535	.	G	A	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.153;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-0.720;QD=15.16;ReadPosRankSum=-0.581;SOR=0.523;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+1071C>T||||||	GT:AD:DP:GQ:PL	0/1:18,31:49:99:771,0,509	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5724	.	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.263;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-1.258;SOR=1.782;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+882G>A||||||	GT:AD:DP:GQ:PL	0/1:27,8:35:99:144,0,699	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5774	.	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.655;HaplotypeScore=5.9128;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=1;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-0.232;SOR=0.349;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+832G>A||||||	GT:AD:DP:GQ:PL	0/1:18,10:28:99:201,0,444	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5777	.	T	C	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9128;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=1;MQRankSum=0.000;QD=18.74;ReadPosRankSum=0.788;SOR=0.627;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+829A>G||||||	GT:AD:DP:GQ:PL	0/1:6,22:28:70:553,0,70	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5785	.	G	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9128;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=1;MQRankSum=-1.306;QD=7.26;ReadPosRankSum=-0.023;SOR=0.555;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+821C>T||||||	GT:AD:DP:GQ:PL	0/1:19,11:30:99:246,0,463	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5804	.	T	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=1;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.667;SOR=0.502;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+802A>T||||||	GT:AD:DP:GQ:PL	0/1:18,9:27:99:165,0,469	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5821	.	A	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.70;ReadPosRankSum=0.214;SOR=1.162;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+785T>A||||||	GT:AD:DP:GQ:PL	0/1:12,9:21:99:253,0,301	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5865	.	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.68;ReadPosRankSum=0.728;SOR=0.368;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+741T>C||||||	GT:AD:DP:GQ:PL	0/1:6,4:10:99:105,0,181	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5880	.	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.566;SOR=0.368;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+726C>T||||||	GT:AD:DP:GQ:PL	0/1:4,5:9:99:148,0,108	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5956	.	G	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=7;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.11;ReadPosRankSum=1.465;SOR=1.022;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+650C>G||||||	GT:AD:DP:GQ:PL	0/1:2,5:7:33:120,0,33	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	5972	.	A	G	163.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=9;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.20;ReadPosRankSum=0.000;SOR=1.609;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+634T>C||||||	GT:AD:DP:GQ:PL	0/1:2,7:9:27:192,0,27	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6015	.	A	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.80;ReadPosRankSum=-0.471;SOR=0.693;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+591T>A||||||	GT:AD:DP:GQ:PL	0/1:3,13:16:55:313,0,55	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6079	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.658;SOR=0.425;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+527C>T||||||	GT:AD:DP:GQ:PL	0/1:17,4:21:81:81,0,438	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6120	.	A	AAAG	798.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.62;ReadPosRankSum=0.639;SOR=0.914;ANN=AAAG|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+485_306+486insCTT||||||	GT:AD:DP:GQ:PL	0/1:4,18:26:99:836,0,122	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6124	.	G	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.63;ReadPosRankSum=-0.321;SOR=1.061;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+482C>T||||||	GT:AD:DP:GQ:PL	0/1:8,17:25:99:469,0,125	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6197	.	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=7.3270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.45;ReadPosRankSum=0.521;SOR=0.174;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+409A>G||||||	GT:AD:DP:GQ:PL	0/1:5,21:26:78:534,0,78	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6249	.	AATT	A	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-1.113;SOR=0.782;ANN=A|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+354_306+356delAAT||||||	GT:AD:DP:GQ:PL	0/1:14,10:24:99:296,0,517	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6259	.	TTA	T	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.265;QD=33.26;ReadPosRankSum=-0.287;SOR=0.776;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+345_306+346delTA||||||	GT:AD:DP:GQ:PL	0/1:3,19:22:82:769,0,82	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6266	.	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.3945;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.171;QD=21.57;ReadPosRankSum=-1.263;SOR=1.371;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+340G>A||||||	GT:AD:DP:GQ:PL	0/1:2,17:19:39:438,0,39	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6356	.	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.908;QD=6.25;ReadPosRankSum=-0.269;SOR=1.535;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+250T>C||||||	GT:AD:DP:GQ:PL	0/1:7,4:11:97:97,0,192	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6367	.	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=8;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.319;SOR=2.303;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+239T>C||||||	GT:AD:DP:GQ:PL	0/1:6,2:8:63:63,0,187	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6434	.	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.000;SOR=1.472;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+172G>A||||||	GT:AD:DP:GQ:PL	0/1:6,4:10:99:108,0,153	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6460	.	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.186;SOR=1.170;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|2/2|c.306+146A>G||||||	GT:AD:DP:GQ:PL	0/1:8,6:14:99:144,0,226	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	6918	.	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-0.116;SOR=1.034;ANN=C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_1884_2177|GENE_EXON_scaffold149685_cov71_1884_2177|transcript|Soaet10008663|protein_coding|1/2|c.156+13A>G||||||	GT:AD:DP:GQ:PL	0/1:12,8:20:99:235,0,435	scaffold149685_cov71	GLEAN	mRNA	1884	7086	0.82	-	.	ID=Soaet10008663
scaffold149685_cov71	63712	.	T	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=1.054;QD=12.15;ReadPosRankSum=1.022;SOR=0.892;ANN=C|missense_variant|MODERATE|EXON_scaffold149685_cov71_63555_63860|GENE_EXON_scaffold149685_cov71_63555_63860|transcript|Soaet10008664|protein_coding|1/1|c.149A>G|p.His50Arg|149/306|149/306|50/101||	GT:AD:DP:GQ:PL	0/1:10,9:20:99:259,0,249	scaffold149685_cov71	GLEAN	mRNA	63555	63860	0.97	-	.	ID=Soaet10008664
scaffold149685_cov71	79443	.	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-1.958;SOR=0.709;ANN=C|synonymous_variant|LOW|EXON_scaffold149685_cov71_79347_79503|GENE_EXON_scaffold149685_cov71_79347_79503|transcript|Soaet10008665|protein_coding|6/6|c.1032A>G|p.Ala344Ala|1032/1128|1032/1128|344/375||	GT:AD:DP:GQ:PL	0/1:15,13:28:99:294,0,376	scaffold149685_cov71	GLEAN	mRNA	79347	81384	0.96	-	.	ID=Soaet10008665
scaffold149685_cov71	79712	.	T	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-0.737;SOR=0.591;ANN=C|synonymous_variant|LOW|EXON_scaffold149685_cov71_79347_79503|GENE_EXON_scaffold149685_cov71_79347_79503|transcript|Soaet10008665|protein_coding|5/6|c.843A>G|p.Gly281Gly|843/1128|843/1128|281/375||	GT:AD:DP:GQ:PL	0/1:9,16:25:99:415,0,250	scaffold149685_cov71	GLEAN	mRNA	79347	81384	0.96	-	.	ID=Soaet10008665
scaffold149685_cov71	80902	.	C	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.52;ReadPosRankSum=1.104;SOR=0.595;ANN=T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_79347_79503|GENE_EXON_scaffold149685_cov71_79347_79503|transcript|Soaet10008665|protein_coding|2/5|c.332+109G>A||||||	GT:AD:DP:GQ:PL	0/1:4,7:11:99:210,0,100	scaffold149685_cov71	GLEAN	mRNA	79347	81384	0.96	-	.	ID=Soaet10008665
scaffold149685_cov71	81213	.	CATGATGATG	C	736.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=1.327;QD=12.28;RPA=9,6;RU=ATG;ReadPosRankSum=0.232;SOR=0.446;STR;ANN=C|splice_acceptor_variant&splice_region_variant&intron_variant|HIGH|EXON_scaffold149685_cov71_79347_79503|GENE_EXON_scaffold149685_cov71_79347_79503|transcript|Soaet10008665|protein_coding|1/5|c.130-9_130-1delCATCATCAT||||||;LOF=(EXON_scaffold149685_cov71_79347_79503|GENE_EXON_scaffold149685_cov71_79347_79503|1|1.00)	GT:AD:DP:GQ:PL	0/1:12,8:23:99:774,0,1268	scaffold149685_cov71	GLEAN	mRNA	79347	81384	0.96	-	.	ID=Soaet10008665
scaffold149685_cov71	98379	.	A	AG	259.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.64;RPA=11,12;RU=G;SOR=0.693;STR;ANN=AG|frameshift_variant|HIGH|EXON_scaffold149685_cov71_98137_98604|GENE_EXON_scaffold149685_cov71_98137_98604|transcript|Soaet10008667|protein_coding|1/1|c.225dupC|p.Ser76fs|225/468|225/468|75/155||,AG|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_98863_99090|GENE_EXON_scaffold149685_cov71_98863_99090|transcript|Soaet10008668|protein_coding||c.*483dupC|||||483|;LOF=(EXON_scaffold149685_cov71_98137_98604|GENE_EXON_scaffold149685_cov71_98137_98604|1|1.00)	GT:AD:DP:GQ:PL	1/1:0,12:16:35:297,35,0	scaffold149685_cov71	GLEAN	mRNA	98137	98604	0.97	-	.	ID=Soaet10008667
scaffold149685_cov71	98429	.	A	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.090;SOR=0.616;ANN=T|missense_variant|MODERATE|EXON_scaffold149685_cov71_98137_98604|GENE_EXON_scaffold149685_cov71_98137_98604|transcript|Soaet10008667|protein_coding|1/1|c.176T>A|p.Ile59Asn|176/468|176/468|59/155||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_98863_99090|GENE_EXON_scaffold149685_cov71_98863_99090|transcript|Soaet10008668|protein_coding||c.*434T>A|||||434|	GT:AD:DP:GQ:PL	0/1:17,4:21:99:104,0,562	scaffold149685_cov71	GLEAN	mRNA	98137	98604	0.97	-	.	ID=Soaet10008667
scaffold149685_cov71	98457	.	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.325;SOR=0.941;ANN=G|synonymous_variant|LOW|EXON_scaffold149685_cov71_98137_98604|GENE_EXON_scaffold149685_cov71_98137_98604|transcript|Soaet10008667|protein_coding|1/1|c.148T>C|p.Leu50Leu|148/468|148/468|50/155||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_98863_99090|GENE_EXON_scaffold149685_cov71_98863_99090|transcript|Soaet10008668|protein_coding||c.*406T>C|||||406|	GT:AD:DP:GQ:PL	0/1:16,5:21:99:115,0,516	scaffold149685_cov71	GLEAN	mRNA	98137	98604	0.97	-	.	ID=Soaet10008667
scaffold149685_cov71	98863	.	T	C	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.22;ReadPosRankSum=0.252;SOR=1.270;ANN=C|stop_lost&splice_region_variant|HIGH|EXON_scaffold149685_cov71_98863_99090|GENE_EXON_scaffold149685_cov71_98863_99090|transcript|Soaet10008668|protein_coding|1/1|c.228A>G|p.Ter76Trpext*?|228/228|228/228|76/75||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_98137_98604|GENE_EXON_scaffold149685_cov71_98137_98604|transcript|Soaet10008667|protein_coding||c.-259A>G|||||259|	GT:AD:DP:GQ:PL	0/1:6,11:17:99:270,0,160	scaffold149685_cov71	GLEAN	mRNA	98863	99090	0.97	-	.	ID=Soaet10008668
scaffold149685_cov71	98949	.	T	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-0.774;SOR=0.732;ANN=C|missense_variant|MODERATE|EXON_scaffold149685_cov71_98863_99090|GENE_EXON_scaffold149685_cov71_98863_99090|transcript|Soaet10008668|protein_coding|1/1|c.142A>G|p.Lys48Glu|142/228|142/228|48/75||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_98137_98604|GENE_EXON_scaffold149685_cov71_98137_98604|transcript|Soaet10008667|protein_coding||c.-345A>G|||||345|	GT:AD:DP:GQ:PL	0/1:7,9:16:99:246,0,204	scaffold149685_cov71	GLEAN	mRNA	98863	99090	0.97	-	.	ID=Soaet10008668
scaffold149685_cov71	108006	.	A	C	213.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.44;ReadPosRankSum=1.112;SOR=0.793;ANN=C|missense_variant|MODERATE|EXON_scaffold149685_cov71_107977_108465|GENE_EXON_scaffold149685_cov71_107977_108465|transcript|Soaet10008669|protein_coding|1/1|c.460T>G|p.Tyr154Asp|460/489|460/489|154/162||,C|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_109684_109863|GENE_EXON_scaffold149685_cov71_109684_109863|transcript|Soaet10008670|protein_coding||c.*1678T>G|||||1678|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_112129_112610|GENE_EXON_scaffold149685_cov71_112129_112610|transcript|Soaet10008671|protein_coding||c.*4123T>G|||||4123|	GT:AD:DP:GQ:PL	0/1:1,10:11:21:242,0,21	scaffold149685_cov71	GLEAN	mRNA	107977	108465	0.97	-	.	ID=Soaet10008669
scaffold149685_cov71	108107	.	T	A	29.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-1.834;SOR=2.245;ANN=A|missense_variant|MODERATE|EXON_scaffold149685_cov71_107977_108465|GENE_EXON_scaffold149685_cov71_107977_108465|transcript|Soaet10008669|protein_coding|1/1|c.359A>T|p.Asn120Ile|359/489|359/489|120/162||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_109684_109863|GENE_EXON_scaffold149685_cov71_109684_109863|transcript|Soaet10008670|protein_coding||c.*1577A>T|||||1577|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_112129_112610|GENE_EXON_scaffold149685_cov71_112129_112610|transcript|Soaet10008671|protein_coding||c.*4022A>T|||||4022|	GT:AD:DP:GQ:PL	0/1:8,2:10:58:58,0,234	scaffold149685_cov71	GLEAN	mRNA	107977	108465	0.97	-	.	ID=Soaet10008669
scaffold149685_cov71	108185	.	G	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-2.198;SOR=0.654;ANN=T|stop_gained|HIGH|EXON_scaffold149685_cov71_107977_108465|GENE_EXON_scaffold149685_cov71_107977_108465|transcript|Soaet10008669|protein_coding|1/1|c.281C>A|p.Ser94*|281/489|281/489|94/162||,T|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_109684_109863|GENE_EXON_scaffold149685_cov71_109684_109863|transcript|Soaet10008670|protein_coding||c.*1499C>A|||||1499|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_112129_112610|GENE_EXON_scaffold149685_cov71_112129_112610|transcript|Soaet10008671|protein_coding||c.*3944C>A|||||3944|	GT:AD:DP:GQ:PL	0/1:6,7:13:99:229,0,105	scaffold149685_cov71	GLEAN	mRNA	107977	108465	0.97	-	.	ID=Soaet10008669
scaffold149685_cov71	109694	.	T	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.29;ReadPosRankSum=0.505;SOR=1.075;ANN=C|missense_variant|MODERATE|EXON_scaffold149685_cov71_109684_109863|GENE_EXON_scaffold149685_cov71_109684_109863|transcript|Soaet10008670|protein_coding|1/1|c.170A>G|p.His57Arg|170/180|170/180|57/59||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_107977_108465|GENE_EXON_scaffold149685_cov71_107977_108465|transcript|Soaet10008669|protein_coding||c.-1229A>G|||||1229|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_112129_112610|GENE_EXON_scaffold149685_cov71_112129_112610|transcript|Soaet10008671|protein_coding||c.*2435A>G|||||2435|	GT:AD:DP:GQ:PL	0/1:9,14:23:99:380,0,207	scaffold149685_cov71	GLEAN	mRNA	109684	109863	0.97	-	.	ID=Soaet10008670
scaffold149685_cov71	112384	.	A	C	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.93;ReadPosRankSum=0.621;SOR=0.657;ANN=C|missense_variant|MODERATE|EXON_scaffold149685_cov71_112129_112610|GENE_EXON_scaffold149685_cov71_112129_112610|transcript|Soaet10008671|protein_coding|2/2|c.318T>G|p.Asn106Lys|318/573|318/573|106/190||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_107977_108465|GENE_EXON_scaffold149685_cov71_107977_108465|transcript|Soaet10008669|protein_coding||c.-3919T>G|||||3919|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_109684_109863|GENE_EXON_scaffold149685_cov71_109684_109863|transcript|Soaet10008670|protein_coding||c.-2521T>G|||||2521|	GT:AD:DP:GQ:PL	0/1:21,13:34:99:298,0,656	scaffold149685_cov71	GLEAN	mRNA	112129	113090	0.63	-	.	ID=Soaet10008671
scaffold149685_cov71	112753	.	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-1.972;SOR=0.293;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_107977_108465|GENE_EXON_scaffold149685_cov71_107977_108465|transcript|Soaet10008669|protein_coding||c.-4288G>A|||||4288|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_109684_109863|GENE_EXON_scaffold149685_cov71_109684_109863|transcript|Soaet10008670|protein_coding||c.-2890G>A|||||2890|,T|intron_variant|MODIFIER|EXON_scaffold149685_cov71_112129_112610|GENE_EXON_scaffold149685_cov71_112129_112610|transcript|Soaet10008671|protein_coding|1/1|c.92-143G>A||||||	GT:AD:DP:GQ:PL	0/1:10,11:21:99:275,0,309	scaffold149685_cov71	GLEAN	mRNA	112129	113090	0.63	-	.	ID=Soaet10008671
scaffold149685_cov71	112886	.	G	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.962;SOR=0.784;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_107977_108465|GENE_EXON_scaffold149685_cov71_107977_108465|transcript|Soaet10008669|protein_coding||c.-4421C>G|||||4421|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_109684_109863|GENE_EXON_scaffold149685_cov71_109684_109863|transcript|Soaet10008670|protein_coding||c.-3023C>G|||||3023|,C|intron_variant|MODIFIER|EXON_scaffold149685_cov71_112129_112610|GENE_EXON_scaffold149685_cov71_112129_112610|transcript|Soaet10008671|protein_coding|1/1|c.91+114C>G||||||	GT:AD:DP:GQ:PL	0/1:17,8:25:99:263,0,418	scaffold149685_cov71	GLEAN	mRNA	112129	113090	0.63	-	.	ID=Soaet10008671
scaffold149685_cov71	175065	.	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.63;ReadPosRankSum=2.042;SOR=0.368;ANN=G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_174055_174087|GENE_EXON_scaffold149685_cov71_174055_174087|transcript|Soaet10008673|protein_coding|1/7|c.45+11T>C||||||	GT:AD:DP:GQ:PL	0/1:13,12:25:99:394,0,388	scaffold149685_cov71	GLEAN	mRNA	174055	175120	1.00	-	.	ID=Soaet10008673
scaffold149685_cov71	189502	.	C	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.330;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.066;SOR=0.481;ANN=G|missense_variant|MODERATE|EXON_scaffold149685_cov71_189326_189529|GENE_EXON_scaffold149685_cov71_189326_189529|transcript|Soaet10008674|protein_coding|3/3|c.217G>C|p.Gly73Arg|217/393|217/393|73/130||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_190170_190335|GENE_EXON_scaffold149685_cov71_190170_190335|transcript|Soaet10008675|protein_coding||c.*668G>C|||||668|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_190788_190958|GENE_EXON_scaffold149685_cov71_190788_190958|transcript|Soaet10008676|protein_coding||c.*1286G>C|||||1286|	GT:AD:DP:GQ:PL	0/1:19,16:35:99:435,0,445	scaffold149685_cov71	GLEAN	mRNA	189326	190074	0.60	-	.	ID=Soaet10008674
scaffold149685_cov71	189582	.	C	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-1.002;SOR=0.990;ANN=G|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_190170_190335|GENE_EXON_scaffold149685_cov71_190170_190335|transcript|Soaet10008675|protein_coding||c.*588G>C|||||588|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_190788_190958|GENE_EXON_scaffold149685_cov71_190788_190958|transcript|Soaet10008676|protein_coding||c.*1206G>C|||||1206|,G|intron_variant|MODIFIER|EXON_scaffold149685_cov71_189326_189529|GENE_EXON_scaffold149685_cov71_189326_189529|transcript|Soaet10008674|protein_coding|2/2|c.190-53G>C||||||	GT:AD:DP:GQ:PL	0/1:24,21:45:99:570,0,625	scaffold149685_cov71	GLEAN	mRNA	189326	190074	0.60	-	.	ID=Soaet10008674
scaffold149685_cov71	190895	.	C	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.30;ReadPosRankSum=-0.796;SOR=0.582;ANN=T|missense_variant|MODERATE|EXON_scaffold149685_cov71_190788_190958|GENE_EXON_scaffold149685_cov71_190788_190958|transcript|Soaet10008676|protein_coding|5/5|c.430G>A|p.Asp144Asn|430/537|430/537|144/178||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_189326_189529|GENE_EXON_scaffold149685_cov71_189326_189529|transcript|Soaet10008674|protein_coding||c.-821G>A|||||821|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149685_cov71_190170_190335|GENE_EXON_scaffold149685_cov71_190170_190335|transcript|Soaet10008675|protein_coding||c.-227G>A|||||227|	GT:AD:DP:GQ:PL	0/1:15,18:33:99:632,0,372	scaffold149685_cov71	GLEAN	mRNA	190788	192150	0.33	-	.	ID=Soaet10008676
scaffold149725_cov62	172641	.	A	G	965.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=27.30;SOR=1.445;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.4A>G|p.Lys2Glu|4/1014|4/1014|2/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,26:27:72:994,72,0	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	172644	.	A	G	994.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.75;SOR=1.528;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.7A>G|p.Ser3Gly|7/1014|7/1014|3/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,27:27:75:1023,75,0	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	172835	.	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.92;SOR=0.892;ANN=G|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.198A>G|p.Leu66Leu|198/1014|198/1014|66/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1327,96,0	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173205	.	G	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.271;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=1.200;QD=15.29;ReadPosRankSum=-0.015;SOR=0.990;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.568G>T|p.Val190Phe|568/1014|568/1014|190/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:16,21:37:99:594,0,454	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173211	.	G	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.428;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=1.127;QD=16.37;ReadPosRankSum=0.416;SOR=1.201;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.574G>A|p.Asp192Asn|574/1014|574/1014|192/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:15,17:32:99:552,0,446	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173417	.	T	C	1070.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.54;SOR=1.044;ANN=C|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.780T>C|p.Ser260Ser|780/1014|780/1014|260/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,31:31:78:1099,78,0	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173519	.	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.660;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=1;MQRankSum=-6.107;QD=0.77;ReadPosRankSum=-3.273;SOR=2.200;ANN=T|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.882C>T|p.Tyr294Tyr|882/1014|882/1014|294/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,6:40:59:59,0,951	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173522	.	C	T	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.396;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=55.89;MQ0=1;MQRankSum=-6.189;QD=0.60;ReadPosRankSum=-2.863;SOR=2.105;ANN=T|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.885C>T|p.Asn295Asn|885/1014|885/1014|295/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:35,6:41:53:53,0,1046	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173537	.	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.762;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=1;MQRankSum=-6.255;QD=1.09;ReadPosRankSum=-1.548;SOR=1.581;ANN=A|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.900G>A|p.Glu300Glu|900/1014|900/1014|300/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,8:42:74:74,0,919	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173543	.	G	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.724;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=1;MQRankSum=-6.255;QD=0.95;ReadPosRankSum=-0.971;SOR=1.581;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.906G>T|p.Leu302Phe|906/1014|906/1014|302/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:34,8:42:68:68,0,996	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173553	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.444;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=1;MQRankSum=-6.160;QD=1.19;ReadPosRankSum=-0.583;SOR=0.979;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.916G>A|p.Glu306Lys|916/1014|916/1014|306/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:32,9:41:77:77,0,874	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173555	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=1;MLEAF=0.500;MQ=53.82;MQ0=1;MQRankSum=-6.243;QD=1.16;ReadPosRankSum=-0.252;SOR=0.917;ANN=A|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.918G>A|p.Glu306Glu|918/1014|918/1014|306/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:33,9:42:77:77,0,876	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173567	.	C	T	10.2	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=54.99;MQ0=0;MQRankSum=-6.004;QD=0.27;ReadPosRankSum=0.466;SOR=0.473;ANN=T|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.930C>T|p.Asn310Asn|930/1014|930/1014|310/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:30,8:38:38:38,0,1005	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173569	.	C	T	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.519;HaplotypeScore=5.3680;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=-5.918;QD=0.43;ReadPosRankSum=0.664;SOR=0.420;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.932C>T|p.Ala311Val|932/1014|932/1014|311/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,8:37:44:44,0,935	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173571	.	G	A	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.586;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=0;MQRankSum=-5.831;QD=0.61;ReadPosRankSum=0.952;SOR=0.368;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.934G>A|p.Glu312Lys|934/1014|934/1014|312/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,8:36:50:50,0,853	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173577	.	A	G	21.8	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.586;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=0;MQRankSum=-5.831;QD=0.61;ReadPosRankSum=1.732;SOR=0.368;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.940A>G|p.Ile314Val|940/1014|940/1014|314/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,8:36:50:50,0,841	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173582	.	T	C	15.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.081;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.586;HaplotypeScore=3.5363;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=0;MQRankSum=-5.831;QD=0.44;ReadPosRankSum=2.284;SOR=0.368;ANN=C|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.945T>C|p.Phe315Phe|945/1014|945/1014|315/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:28,8:36:44:44,0,918	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173583	.	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=28.24;SOR=1.061;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.946G>A|p.Val316Ile|946/1014|946/1014|316/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,36:36:78:1045,78,0	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173587	.	C	T	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.614;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=-5.918;QD=0.51;ReadPosRankSum=2.879;SOR=0.336;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.950C>T|p.Thr317Met|950/1014|950/1014|317/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:29,8:37:47:47,0,901	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173594	.	T	C	18.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.512;HaplotypeScore=4.5794;MLEAC=1;MLEAF=0.500;MQ=53.10;MQ0=1;MQRankSum=-5.814;QD=0.51;ReadPosRankSum=2.466;SOR=0.742;ANN=C|synonymous_variant|LOW|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.957T>C|p.Tyr319Tyr|957/1014|957/1014|319/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:27,10:37:47:47,0,845	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173613	.	T	C	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=52.19;MQ0=1;MQRankSum=5.371;QD=20.88;ReadPosRankSum=-1.066;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.976T>C|p.Trp326Arg|976/1014|976/1014|326/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:12,24:37:56:780,0,56	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173614	.	G	T	24.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=52.19;MQ0=1;MQRankSum=-5.794;QD=0.67;ReadPosRankSum=1.502;SOR=1.085;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.977G>T|p.Trp326Leu|977/1014|977/1014|326/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:26,11:37:53:53,0,788	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173622	.	C	T	27.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=51.96;MQ0=1;MQRankSum=-5.703;QD=0.77;ReadPosRankSum=1.370;SOR=0.990;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.985C>T|p.Pro329Ser|985/1014|985/1014|329/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	0/1:25,11:36:56:56,0,794	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	173649	.	T	C	722.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.42;SOR=0.776;ANN=C|stop_lost&splice_region_variant|HIGH|EXON_scaffold149725_cov62_172638_173651|GENE_EXON_scaffold149725_cov62_172638_173651|transcript|Soaet10008635|protein_coding|1/1|c.1012T>C|p.Ter338Glnext*?|1012/1014|1012/1014|338/337||WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS	GT:AD:DP:GQ:PL	1/1:0,23:23:54:751,54,0	scaffold149725_cov62	GLEAN	mRNA	172638	173651	0.97	+	.	ID=Soaet10008635
scaffold149725_cov62	179325	.	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.18;SOR=1.085;ANN=G|stop_lost&splice_region_variant|HIGH|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.487T>C|p.Ter163Glnext*?|487/489|487/489|163/162||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2449T>C|||||2449|	GT:AD:DP:GQ:PL	1/1:0,34:35:90:1242,90,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	179374	.	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=34.62;SOR=1.022;ANN=G|synonymous_variant|LOW|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.438T>C|p.Ser146Ser|438/489|438/489|146/162||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2400T>C|||||2400|	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1413,102,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	179390	.	A	G	1290.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.803;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=6.483;QD=30.73;ReadPosRankSum=0.532;SOR=1.151;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.422T>C|p.Ile141Thr|422/489|422/489|141/162||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2384T>C|||||2384|	GT:AD:DP:GQ:PL	1/1:2,40:42:58:1319,58,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	179455	.	G	A	1448.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.663;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=6.784;QD=31.49;ReadPosRankSum=-1.266;SOR=0.693;ANN=A|synonymous_variant|LOW|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.357C>T|p.His119His|357/489|357/489|119/162||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2319C>T|||||2319|	GT:AD:DP:GQ:PL	1/1:2,44:46:67:1477,67,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	179499	.	G	A	1273.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.600;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7475;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=5.295;QD=31.07;ReadPosRankSum=1.908;SOR=0.968;ANN=A|stop_gained|HIGH|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.313C>T|p.Gln105*|313/489|313/489|105/162||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2275C>T|||||2275|	GT:AD:DP:GQ:PL	1/1:2,39:41:55:1302,55,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	179548	.	T	G	1197.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.71;SOR=1.236;ANN=G|synonymous_variant|LOW|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.264A>C|p.Ala88Ala|264/489|264/489|88/162||,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2226A>C|||||2226|	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1226,87,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	179632	.	G	A	1232.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.32;SOR=1.270;ANN=A|synonymous_variant|LOW|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.180C>T|p.Ser60Ser|180/489|180/489|60/162||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2142C>T|||||2142|	GT:AD:DP:GQ:PL	1/1:0,37:38:90:1261,90,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	179718	.	C	A	971.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.71;SOR=0.836;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding|1/1|c.94G>T|p.Ala32Ser|94/489|94/489|32/162||,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding||c.*2056G>T|||||2056|	GT:AD:DP:GQ:PL	1/1:0,28:28:72:1000,72,0	scaffold149725_cov62	GLEAN	mRNA	179323	179811	0.97	-	.	ID=Soaet10008638
scaffold149725_cov62	181902	.	A	C	679.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=1;QD=30.90;SOR=0.784;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_181774_181947|GENE_EXON_scaffold149725_cov62_181774_181947|transcript|Soaet10008639|protein_coding|1/1|c.46T>G|p.Ser16Ala|46/174|46/174|16/57||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_179323_179811|GENE_EXON_scaffold149725_cov62_179323_179811|transcript|Soaet10008638|protein_coding||c.-2091T>G|||||2091|	GT:AD:DP:GQ:PL	1/1:0,22:22:51:708,51,0	scaffold149725_cov62	GLEAN	mRNA	181774	181947	0.97	-	.	ID=Soaet10008639
scaffold149725_cov62	193813	.	C	T	742.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.76;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-902G>A|||||902|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-1173C>T|||||1173|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-1533C>T|||||1533|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-616G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:57:771,57,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	193819	.	G	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.85;ReadPosRankSum=0.066;SOR=0.740;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-908C>G|||||908|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-1167G>C|||||1167|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-1527G>C|||||1527|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-622C>G||||||	GT:AD:DP:GQ:PL	0/1:11,11:22:99:355,0,326	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	193895	.	G	A	659.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.69;SOR=0.776;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-984C>T|||||984|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-1091G>A|||||1091|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-1451G>A|||||1451|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-698C>T||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:51:688,51,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	193958	.	C	CGACGG	1348.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.57;RPA=1,2;RU=GACGG;SOR=1.493;STR;ANN=CGACGG|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1048_-1047insCCGTC|||||1048|,CGACGG|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-1028_-1027insGACGG|||||1027|,CGACGG|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-1388_-1387insGACGG|||||1387|,CGACGG|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-762_253-761insCCGTC||||||	GT:AD:DP:GQ:PL	1/1:0,18:21:54:1386,54,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	193980	.	A	G	582.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.14;SOR=1.127;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1069T>C|||||1069|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-1006A>G|||||1006|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-1366A>G|||||1366|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-783T>C||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:611,45,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194033	.	C	T	761.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.63;SOR=0.874;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1122G>A|||||1122|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-953C>T|||||953|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-1313C>T|||||1313|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-836G>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:57:790,57,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194352	.	G	A	533.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.09;SOR=1.022;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1441C>T|||||1441|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-634G>A|||||634|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-994G>A|||||994|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1155C>T||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:39:562,39,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194436	.	T	C	388.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.91;SOR=0.836;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1525A>G|||||1525|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-550T>C|||||550|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-910T>C|||||910|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1239A>G||||||	GT:AD:DP:GQ:PL	1/1:0,13:13:30:417,30,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194443	.	A	G	428.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.63;SOR=0.976;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1532T>C|||||1532|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-543A>G|||||543|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-903A>G|||||903|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1246T>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:457,33,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194531	.	C	T	459.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.54;SOR=0.914;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1620G>A|||||1620|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-455C>T|||||455|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-815C>T|||||815|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1334G>A||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:36:488,36,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194771	.	T	C	1179.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.71;SOR=0.749;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1860A>G|||||1860|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-215T>C|||||215|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-575T>C|||||575|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4954T>C|||||4954|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1574A>G||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:87:1208,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194773	.	G	A	1111.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.76;SOR=0.749;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1862C>T|||||1862|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-213G>A|||||213|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-573G>A|||||573|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4952G>A|||||4952|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1576C>T||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:81:1140,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194821	.	A	C	1174.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.75;SOR=0.746;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-1910T>G|||||1910|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-165A>C|||||165|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-525A>C|||||525|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4904A>C|||||4904|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1624T>G||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:87:1203,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194968	.	A	T	1193.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.61;SOR=0.968;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2057T>A|||||2057|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-18A>T|||||18|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-378A>T|||||378|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4757A>T|||||4757|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1771T>A||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1222,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	194982	.	A	G	1164.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.65;SOR=0.693;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2071T>C|||||2071|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.-4A>G|||||4|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-364A>G|||||364|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4743A>G|||||4743|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1785T>C||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1193,84,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195079	.	A	C	1143.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.64;SOR=0.811;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding|1/1|c.94A>C|p.Thr32Pro|94/318|94/318|32/105||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2168T>G|||||2168|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-267A>C|||||267|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4646A>C|||||4646|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1882T>G||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1172,84,0	scaffold149725_cov62	GLEAN	mRNA	194986	195303	0.42	+	.	ID=Soaet10008642
scaffold149725_cov62	195079	.	A	C	1143.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.64;SOR=0.811;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding|1/1|c.94A>C|p.Thr32Pro|94/318|94/318|32/105||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2168T>G|||||2168|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-267A>C|||||267|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4646A>C|||||4646|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-1882T>G||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1172,84,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195334	.	C	T	1087.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.08;SOR=1.002;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2423G>A|||||2423|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.-12C>T|||||12|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4391C>T|||||4391|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*31C>T|||||31|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2137G>A||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1116,84,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195399	.	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=31.68;SOR=0.869;ANN=G|synonymous_variant|LOW|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/2|c.54A>G|p.Ser18Ser|54/480|54/480|18/159||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2488T>C|||||2488|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4326A>G|||||4326|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*96A>G|||||96|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2202T>C||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1137,84,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195399	.	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=31.68;SOR=0.869;ANN=G|synonymous_variant|LOW|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/2|c.54A>G|p.Ser18Ser|54/480|54/480|18/159||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2488T>C|||||2488|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-4326A>G|||||4326|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*96A>G|||||96|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2202T>C||||||	GT:AD:DP:GQ:PL	1/1:0,35:35:84:1137,84,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195727	.	A	G	985.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SOR=0.892;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2816T>C|||||2816|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3998A>G|||||3998|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*424A>G|||||424|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2530T>C||||||,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+10A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:72:1014,72,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195727	.	A	G	985.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SOR=0.892;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2816T>C|||||2816|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3998A>G|||||3998|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*424A>G|||||424|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2530T>C||||||,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+10A>G||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:72:1014,72,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195792	.	C	T	942.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.46;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2881G>A|||||2881|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3933C>T|||||3933|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*489C>T|||||489|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2595G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+75C>T||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:72:971,72,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195792	.	C	T	942.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.46;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2881G>A|||||2881|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3933C>T|||||3933|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*489C>T|||||489|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2595G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+75C>T||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:72:971,72,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195827	.	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.61;ReadPosRankSum=0.931;SOR=0.527;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2916G>A|||||2916|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3898C>T|||||3898|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*524C>T|||||524|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2630G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+110C>T||||||	GT:AD:DP:GQ:PL	0/1:12,17:29:99:510,0,301	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195827	.	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.61;ReadPosRankSum=0.931;SOR=0.527;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2916G>A|||||2916|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3898C>T|||||3898|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*524C>T|||||524|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2630G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+110C>T||||||	GT:AD:DP:GQ:PL	0/1:12,17:29:99:510,0,301	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195847	.	C	T	967.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.33;SOR=1.179;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2936G>A|||||2936|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3878C>T|||||3878|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*544C>T|||||544|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2650G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+130C>T||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:72:996,72,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195847	.	C	T	967.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.33;SOR=1.179;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-2936G>A|||||2936|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3878C>T|||||3878|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*544C>T|||||544|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2650G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.372+130C>T||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:72:996,72,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195952	.	G	A	1090.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.524;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.97;ReadPosRankSum=1.378;SOR=0.317;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3041C>T|||||3041|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3773G>A|||||3773|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*649G>A|||||649|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2755C>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-183G>A||||||	GT:AD:DP:GQ:PL	1/1:1,38:39:78:1119,78,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195952	.	G	A	1090.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.524;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.97;ReadPosRankSum=1.378;SOR=0.317;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3041C>T|||||3041|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3773G>A|||||3773|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*649G>A|||||649|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2755C>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-183G>A||||||	GT:AD:DP:GQ:PL	1/1:1,38:39:78:1119,78,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195980	.	G	A	910.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SOR=0.892;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3069C>T|||||3069|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3745G>A|||||3745|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*677G>A|||||677|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2783C>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-155G>A||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:66:939,66,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195980	.	G	A	910.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SOR=0.892;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3069C>T|||||3069|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3745G>A|||||3745|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*677G>A|||||677|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2783C>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-155G>A||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:66:939,66,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	195991	.	G	A	997.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SOR=0.752;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3080C>T|||||3080|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3734G>A|||||3734|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*688G>A|||||688|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2794C>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-144G>A||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1026,72,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	195991	.	G	A	997.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SOR=0.752;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3080C>T|||||3080|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3734G>A|||||3734|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*688G>A|||||688|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2794C>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-144G>A||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1026,72,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196094	.	C	T	944.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.74;SOR=0.997;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3183G>A|||||3183|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3631C>T|||||3631|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*791C>T|||||791|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2897G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-41C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:973,69,0	scaffold149725_cov62	GLEAN	mRNA	195346	196242	0.97	+	.	ID=Soaet10008643
scaffold149725_cov62	196094	.	C	T	944.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.74;SOR=0.997;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3183G>A|||||3183|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3631C>T|||||3631|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*791C>T|||||791|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-2897G>A||||||,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding|1/1|c.373-41C>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:28:69:973,69,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196253	.	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.12;SOR=0.818;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3342C>T|||||3342|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3472G>A|||||3472|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*950G>A|||||950|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*11G>A|||||11|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-3056C>T||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1120,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196467	.	A	G	953.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.79;SOR=0.976;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3556T>C|||||3556|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3258A>G|||||3258|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1164A>G|||||1164|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*225A>G|||||225|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.253-3270T>C||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:69:982,69,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196495	.	A	G	905.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.23;SOR=1.460;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3584T>C|||||3584|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3230A>G|||||3230|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1192A>G|||||1192|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*253A>G|||||253|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3283T>C||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:66:934,66,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196569	.	G	A	824.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.72;SOR=0.846;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3658C>T|||||3658|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3156G>A|||||3156|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1266G>A|||||1266|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*327G>A|||||327|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3209C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:853,60,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196613	.	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SOR=1.022;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3702G>A|||||3702|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3112C>T|||||3112|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1310C>T|||||1310|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*371C>T|||||371|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3165G>A||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1043,75,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196670	.	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.20;SOR=1.179;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3759G>A|||||3759|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3055C>T|||||3055|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1367C>T|||||1367|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*428C>T|||||428|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3108G>A||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1214,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196683	.	T	C	1203.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.68;SOR=1.179;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3772A>G|||||3772|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-3042T>C|||||3042|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1380T>C|||||1380|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*441T>C|||||441|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3095A>G||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1232,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196735	.	A	G	1260.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SOR=0.804;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3824T>C|||||3824|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2990A>G|||||2990|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1432A>G|||||1432|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*493A>G|||||493|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4973T>C|||||4973|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3043T>C||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:96:1289,96,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196751	.	C	T	1187.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.93;SOR=0.811;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3840G>A|||||3840|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2974C>T|||||2974|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1448C>T|||||1448|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*509C>T|||||509|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4957G>A|||||4957|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3027G>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:90:1216,90,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196768	.	G	GT	460.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.329;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.86;RPA=9,10;RU=T;ReadPosRankSum=-0.391;SOR=0.346;STR;ANN=GT|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3858_-3857insA|||||3858|,GT|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2957_-2956insT|||||2956|,GT|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1465_*1466insT|||||1466|,GT|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*526_*527insT|||||527|,GT|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4939_*4940insA|||||4939|,GT|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3009_252+3010insA||||||	GT:AD:DP:GQ:PL	1/1:1,30:34:73:498,73,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196778	.	G	T	1109.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.9097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.68;SOR=0.957;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-3867C>A|||||3867|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2947G>T|||||2947|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1475G>T|||||1475|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*536G>T|||||536|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4930C>A|||||4930|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+3000C>A||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:81:1138,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	196966	.	C	T	511.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.12;SOR=3.126;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4055G>A|||||4055|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2759C>T|||||2759|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1663C>T|||||1663|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*724C>T|||||724|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4742G>A|||||4742|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+2812G>A||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:39:540,39,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197025	.	C	T	443.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.70;SOR=0.976;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4114G>A|||||4114|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2700C>T|||||2700|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1722C>T|||||1722|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*783C>T|||||783|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4683G>A|||||4683|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+2753G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:33:472,33,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197132	.	C	T	312.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.07;SOR=1.445;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4221G>A|||||4221|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2593C>T|||||2593|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*1829C>T|||||1829|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*890C>T|||||890|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4576G>A|||||4576|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+2646G>A||||||	GT:AD:DP:GQ:PL	1/1:0,12:12:24:341,24,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197449	.	A	C	589.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.76;SOR=0.914;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4538T>G|||||4538|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2276A>C|||||2276|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2146A>C|||||2146|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1207A>C|||||1207|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4259T>G|||||4259|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4843T>G|||||4843|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+2329T>G||||||	GT:AD:DP:GQ:PL	1/1:0,18:18:45:618,45,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197501	.	T	G	536.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SOR=1.061;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4590A>C|||||4590|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2224T>G|||||2224|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2198T>G|||||2198|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1259T>G|||||1259|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4207A>C|||||4207|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4791A>C|||||4791|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+2277A>C||||||	GT:AD:DP:GQ:PL	1/1:0,17:18:42:565,42,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197554	.	A	G	713.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.03;SOR=0.776;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4643T>C|||||4643|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2171A>G|||||2171|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2251A>G|||||2251|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1312A>G|||||1312|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4154T>C|||||4154|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4738T>C|||||4738|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+2224T>C||||||	GT:AD:DP:GQ:PL	1/1:0,23:24:54:742,54,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197561	.	C	T	719.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.29;SOR=0.776;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4650G>A|||||4650|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-2164C>T|||||2164|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2258C>T|||||2258|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1319C>T|||||1319|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*4147G>A|||||4147|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4731G>A|||||4731|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+2217G>A||||||	GT:AD:DP:GQ:PL	1/1:0,23:23:54:748,54,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197879	.	T	A	865.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.92;SOR=0.997;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192411_192911|GENE_EXON_scaffold149725_cov62_192411_192911|transcript|Soaet10008640|protein_coding||c.-4968A>T|||||4968|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1846T>A|||||1846|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4726T>A|||||4726|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2576T>A|||||2576|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1637T>A|||||1637|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3829A>T|||||3829|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4413A>T|||||4413|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1899A>T||||||	GT:AD:DP:GQ:PL	1/1:0,28:29:66:894,66,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	197963	.	A	G	1215.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8233;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=1;QD=32.86;SOR=1.209;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1762A>G|||||1762|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4642A>G|||||4642|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2660A>G|||||2660|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1721A>G|||||1721|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3745T>C|||||3745|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4329T>C|||||4329|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1815T>C||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1244,90,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198013	.	G	A	1516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.444;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.60;ReadPosRankSum=-0.144;SOR=0.424;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1712G>A|||||1712|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4592G>A|||||4592|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2710G>A|||||2710|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1771G>A|||||1771|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3695C>T|||||3695|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4279C>T|||||4279|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1765C>T||||||	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1545,111,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198109	.	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.18;SOR=0.798;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1616G>A|||||1616|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4496G>A|||||4496|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2806G>A|||||2806|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*1867G>A|||||1867|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3599C>T|||||3599|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4183C>T|||||4183|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1669C>T||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1175,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198259	.	C	T	911.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.44;SOR=1.071;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1466C>T|||||1466|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4346C>T|||||4346|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2956C>T|||||2956|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2017C>T|||||2017|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3449G>A|||||3449|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4033G>A|||||4033|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4959G>A|||||4959|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1519G>A||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:66:940,66,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198285	.	A	G	778.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.15;SOR=0.770;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1440A>G|||||1440|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4320A>G|||||4320|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*2982A>G|||||2982|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2043A>G|||||2043|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3423T>C|||||3423|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*4007T>C|||||4007|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4933T>C|||||4933|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1493T>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:57:807,57,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198439	.	T	C	1014.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SOR=1.352;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1286T>C|||||1286|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4166T>C|||||4166|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3136T>C|||||3136|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2197T>C|||||2197|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3269A>G|||||3269|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3853A>G|||||3853|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4779A>G|||||4779|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1339A>G||||||	GT:AD:DP:GQ:PL	1/1:0,33:33:75:1043,75,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198459	.	A	C	1116.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.02;SOR=0.693;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1266A>C|||||1266|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4146A>C|||||4146|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3156A>C|||||3156|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2217A>C|||||2217|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3249T>G|||||3249|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3833T>G|||||3833|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4759T>G|||||4759|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1319T>G||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1145,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198495	.	C	T	1108.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.97;SOR=0.859;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1230C>T|||||1230|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4110C>T|||||4110|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3192C>T|||||3192|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2253C>T|||||2253|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3213G>A|||||3213|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3797G>A|||||3797|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4723G>A|||||4723|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1283G>A||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1137,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198567	.	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=30.10;SOR=1.371;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1158C>T|||||1158|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-4038C>T|||||4038|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3264C>T|||||3264|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2325C>T|||||2325|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3141G>A|||||3141|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3725G>A|||||3725|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4651G>A|||||4651|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1211G>A||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:81:1112,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198669	.	C	G	821.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.61;SOR=0.846;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1056C>G|||||1056|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3936C>G|||||3936|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3366C>G|||||3366|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2427C>G|||||2427|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3039G>C|||||3039|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3623G>C|||||3623|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4549G>C|||||4549|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1109G>C||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:63:850,63,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198692	.	C	A	848.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.29;SOR=0.859;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1033C>A|||||1033|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3913C>A|||||3913|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3389C>A|||||3389|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2450C>A|||||2450|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3016G>T|||||3016|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3600G>T|||||3600|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4526G>T|||||4526|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1086G>T||||||	GT:AD:DP:GQ:PL	1/1:0,24:24:63:877,63,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198696	.	C	T	844.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=33.79;SOR=0.941;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-1029C>T|||||1029|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3909C>T|||||3909|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3393C>T|||||3393|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2454C>T|||||2454|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*3012G>A|||||3012|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3596G>A|||||3596|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4522G>A|||||4522|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+1082G>A||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:63:873,63,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	198835	.	T	C	922.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.82;SOR=0.760;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-890T>C|||||890|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3770T>C|||||3770|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3532T>C|||||3532|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2593T>C|||||2593|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2873A>G|||||2873|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3457A>G|||||3457|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4383A>G|||||4383|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+943A>G||||||	GT:AD:DP:GQ:PL	1/1:0,29:29:69:951,69,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199059	.	C	T	1382.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.95;SOR=0.850;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-666C>T|||||666|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3546C>T|||||3546|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3756C>T|||||3756|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2817C>T|||||2817|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2649G>A|||||2649|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3233G>A|||||3233|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4159G>A|||||4159|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+719G>A||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1411,105,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199076	.	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.30;SOR=0.693;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-649T>C|||||649|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3529T>C|||||3529|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3773T>C|||||3773|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2834T>C|||||2834|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2632A>G|||||2632|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3216A>G|||||3216|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4142A>G|||||4142|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+702A>G||||||	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1469,105,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199118	.	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.55;SOR=1.055;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-607T>C|||||607|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3487T>C|||||3487|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3815T>C|||||3815|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2876T>C|||||2876|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2590A>G|||||2590|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3174A>G|||||3174|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*4100A>G|||||4100|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+660A>G||||||	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1471,105,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199237	.	T	C	1173.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.60;SOR=0.693;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-488T>C|||||488|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3368T>C|||||3368|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*3934T>C|||||3934|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*2995T>C|||||2995|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2471A>G|||||2471|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*3055A>G|||||3055|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3981A>G|||||3981|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+541A>G||||||	GT:AD:DP:GQ:PL	1/1:0,36:36:87:1202,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199307	.	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=31.22;SOR=1.236;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-418A>G|||||418|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3298A>G|||||3298|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4004A>G|||||4004|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3065A>G|||||3065|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2401T>C|||||2401|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2985T>C|||||2985|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3911T>C|||||3911|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+471T>C||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:87:1246,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199308	.	T	A	1200.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.094;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.000;QD=30.02;ReadPosRankSum=-0.910;SOR=0.404;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-417T>A|||||417|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3297T>A|||||3297|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4005T>A|||||4005|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3066T>A|||||3066|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2400A>T|||||2400|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2984A>T|||||2984|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3910A>T|||||3910|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+470A>T||||||	GT:AD:DP:GQ:PL	1/1:1,39:40:87:1229,87,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199349	.	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.75;SOR=1.121;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-376C>T|||||376|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3256C>T|||||3256|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4046C>T|||||4046|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3107C>T|||||3107|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2359G>A|||||2359|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2943G>A|||||2943|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3869G>A|||||3869|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+429G>A||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1240,90,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199383	.	T	C	1253.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.99;SOR=1.329;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-342T>C|||||342|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3222T>C|||||3222|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4080T>C|||||4080|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3141T>C|||||3141|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2325A>G|||||2325|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2909A>G|||||2909|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3835A>G|||||3835|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+395A>G||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:93:1282,93,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199410	.	T	C	930.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.24;SOR=0.997;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-315T>C|||||315|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3195T>C|||||3195|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4107T>C|||||4107|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3168T>C|||||3168|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2298A>G|||||2298|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2882A>G|||||2882|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3808A>G|||||3808|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+368A>G||||||	GT:AD:DP:GQ:PL	1/1:0,28:29:69:959,69,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199432	.	C	T	643.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.864;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.82;ReadPosRankSum=1.445;SOR=0.916;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-293C>T|||||293|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3173C>T|||||3173|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4129C>T|||||4129|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3190C>T|||||3190|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2276G>A|||||2276|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2860G>A|||||2860|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3786G>A|||||3786|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+346G>A||||||	GT:AD:DP:GQ:PL	1/1:1,23:24:48:672,48,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199508	.	T	C	816.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.41;SOR=0.693;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-217T>C|||||217|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3097T>C|||||3097|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4205T>C|||||4205|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3266T>C|||||3266|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2200A>G|||||2200|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2784A>G|||||2784|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3710A>G|||||3710|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+270A>G||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:60:845,60,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199579	.	C	T	609.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.49;SOR=0.693;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-146C>T|||||146|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3026C>T|||||3026|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4276C>T|||||4276|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3337C>T|||||3337|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2129G>A|||||2129|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2713G>A|||||2713|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3639G>A|||||3639|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+199G>A||||||	GT:AD:DP:GQ:PL	1/1:0,20:20:45:638,45,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199582	.	G	A	563.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.67;SOR=0.793;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-143G>A|||||143|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-3023G>A|||||3023|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4279G>A|||||4279|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3340G>A|||||3340|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2126C>T|||||2126|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2710C>T|||||2710|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3636C>T|||||3636|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+196C>T||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:42:592,42,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199666	.	G	A	557.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.81;SOR=1.061;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.-59G>A|||||59|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2939G>A|||||2939|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4363G>A|||||4363|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3424G>A|||||3424|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*2042C>T|||||2042|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2626C>T|||||2626|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3552C>T|||||3552|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/2|c.252+112C>T||||||	GT:AD:DP:GQ:PL	1/1:0,17:17:42:586,42,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199795	.	C	T	826.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/3|c.235G>A|p.Glu79Lys|235/489|235/489|79/162||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2810C>T|||||2810|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4492C>T|||||4492|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3553C>T|||||3553|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1913G>A|||||1913|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2497G>A|||||2497|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3423G>A|||||3423|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|1/3|c.9-35C>T||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:60:855,60,0	scaffold149725_cov62	GLEAN	mRNA	199725	200246	0.40	+	.	ID=Soaet10008644
scaffold149725_cov62	199795	.	C	T	826.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.67;SOR=0.892;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|2/3|c.235G>A|p.Glu79Lys|235/489|235/489|79/162||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2810C>T|||||2810|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4492C>T|||||4492|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3553C>T|||||3553|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1913G>A|||||1913|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2497G>A|||||2497|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3423G>A|||||3423|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|1/3|c.9-35C>T||||||	GT:AD:DP:GQ:PL	1/1:0,31:31:60:855,60,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199838	.	C	T	910.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.79;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|2/4|c.17C>T|p.Ser6Phe|17/228|17/228|6/75||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2767C>T|||||2767|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4535C>T|||||4535|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3596C>T|||||3596|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1870G>A|||||1870|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2454G>A|||||2454|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3380G>A|||||3380|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-31G>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:66:939,66,0	scaffold149725_cov62	GLEAN	mRNA	199725	200246	0.40	+	.	ID=Soaet10008644
scaffold149725_cov62	199838	.	C	T	910.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.79;SOR=0.693;ANN=T|missense_variant|MODERATE|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|2/4|c.17C>T|p.Ser6Phe|17/228|17/228|6/75||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2767C>T|||||2767|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4535C>T|||||4535|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3596C>T|||||3596|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1870G>A|||||1870|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2454G>A|||||2454|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3380G>A|||||3380|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-31G>A||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:66:939,66,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	199913	.	A	G	968.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.45;SOR=0.770;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|2/4|c.92A>G|p.Gln31Arg|92/228|92/228|31/75||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2692A>G|||||2692|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4610A>G|||||4610|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3671A>G|||||3671|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1795T>C|||||1795|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2379T>C|||||2379|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3305T>C|||||3305|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-106T>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:72:997,72,0	scaffold149725_cov62	GLEAN	mRNA	199725	200246	0.40	+	.	ID=Soaet10008644
scaffold149725_cov62	199913	.	A	G	968.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.45;SOR=0.770;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|2/4|c.92A>G|p.Gln31Arg|92/228|92/228|31/75||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2692A>G|||||2692|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4610A>G|||||4610|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3671A>G|||||3671|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1795T>C|||||1795|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2379T>C|||||2379|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3305T>C|||||3305|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-106T>C||||||	GT:AD:DP:GQ:PL	1/1:0,25:25:72:997,72,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200023	.	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=31.71;SOR=0.818;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2582A>G|||||2582|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4720A>G|||||4720|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3781A>G|||||3781|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1685T>C|||||1685|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2269T>C|||||2269|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3195T>C|||||3195|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-216T>C||||||,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|2/3|c.119-11A>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1043,75,0	scaffold149725_cov62	GLEAN	mRNA	199725	200246	0.40	+	.	ID=Soaet10008644
scaffold149725_cov62	200023	.	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=31.71;SOR=0.818;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2582A>G|||||2582|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4720A>G|||||4720|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3781A>G|||||3781|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1685T>C|||||1685|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2269T>C|||||2269|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3195T>C|||||3195|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-216T>C||||||,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|2/3|c.119-11A>G||||||	GT:AD:DP:GQ:PL	1/1:0,32:32:75:1043,75,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200062	.	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=31.12;SOR=0.793;ANN=T|synonymous_variant|LOW|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|3/4|c.147C>T|p.Phe49Phe|147/228|147/228|49/75||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2543C>T|||||2543|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4759C>T|||||4759|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3820C>T|||||3820|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1646G>A|||||1646|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2230G>A|||||2230|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3156G>A|||||3156|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-255G>A||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1273,90,0	scaffold149725_cov62	GLEAN	mRNA	199725	200246	0.40	+	.	ID=Soaet10008644
scaffold149725_cov62	200062	.	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=31.12;SOR=0.793;ANN=T|synonymous_variant|LOW|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|3/4|c.147C>T|p.Phe49Phe|147/228|147/228|49/75||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2543C>T|||||2543|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4759C>T|||||4759|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3820C>T|||||3820|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1646G>A|||||1646|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2230G>A|||||2230|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3156G>A|||||3156|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-255G>A||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:90:1273,90,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200090	.	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.52;SOR=0.914;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|3/4|c.175T>C|p.Trp59Arg|175/228|175/228|59/75||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2515T>C|||||2515|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4787T>C|||||4787|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3848T>C|||||3848|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1618A>G|||||1618|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2202A>G|||||2202|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3128A>G|||||3128|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-283A>G||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1188,84,0	scaffold149725_cov62	GLEAN	mRNA	199725	200246	0.40	+	.	ID=Soaet10008644
scaffold149725_cov62	200090	.	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.52;SOR=0.914;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding|3/4|c.175T>C|p.Trp59Arg|175/228|175/228|59/75||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2515T>C|||||2515|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4787T>C|||||4787|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*3848T>C|||||3848|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1618A>G|||||1618|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2202A>G|||||2202|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*3128A>G|||||3128|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-283A>G||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:84:1188,84,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200270	.	G	T	672.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.58;SOR=1.085;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2335G>T|||||2335|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_194986_195303|GENE_EXON_scaffold149725_cov62_194986_195303|transcript|Soaet10008642|protein_coding||c.*4967G>T|||||4967|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4028G>T|||||4028|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*24G>T|||||24|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1438C>A|||||1438|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*2022C>A|||||2022|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2948C>A|||||2948|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-463C>A||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:51:701,51,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200332	.	T	C	715.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.53;SOR=0.693;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2273T>C|||||2273|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4090T>C|||||4090|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*86T>C|||||86|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1376A>G|||||1376|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1960A>G|||||1960|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2886A>G|||||2886|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-525A>G||||||	GT:AD:DP:GQ:PL	1/1:0,22:22:54:744,54,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200362	.	G	A	784.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.18;SOR=0.693;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2243G>A|||||2243|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4120G>A|||||4120|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*116G>A|||||116|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1346C>T|||||1346|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1930C>T|||||1930|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2856C>T|||||2856|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-555C>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:813,57,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200373	.	G	A	696.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.851;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.81;ReadPosRankSum=1.605;SOR=0.223;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2232G>A|||||2232|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4131G>A|||||4131|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*127G>A|||||127|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1335C>T|||||1335|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1919C>T|||||1919|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2845C>T|||||2845|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.223-566C>T||||||	GT:AD:DP:GQ:PL	1/1:1,26:27:54:725,54,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200557	.	T	G	475.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.98;SOR=0.976;ANN=G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2048T>G|||||2048|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4315T>G|||||4315|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*311T>G|||||311|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1151A>C|||||1151|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1735A>C|||||1735|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2661A>C|||||2661|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.222+549A>C||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:36:504,36,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200558	.	C	T	457.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.70;SOR=0.976;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-2047C>T|||||2047|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4316C>T|||||4316|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*312C>T|||||312|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1150G>A|||||1150|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1734G>A|||||1734|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2660G>A|||||2660|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.222+548G>A||||||	GT:AD:DP:GQ:PL	1/1:0,14:14:36:486,36,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	200672	.	G	A	557.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.36;SOR=0.793;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-1933G>A|||||1933|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4430G>A|||||4430|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*426G>A|||||426|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*1036C>T|||||1036|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1620C>T|||||1620|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2546C>T|||||2546|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.222+434C>T||||||	GT:AD:DP:GQ:PL	1/1:0,19:19:42:586,42,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	201010	.	A	T	1092.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.02;SOR=1.096;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-1595A>T|||||1595|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4768A>T|||||4768|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*764A>T|||||764|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*698T>A|||||698|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1282T>A|||||1282|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2208T>A|||||2208|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.222+96T>A||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:81:1121,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	201060	.	A	T	1302.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.57;SOR=0.902;ANN=T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-1545A>T|||||1545|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4818A>T|||||4818|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*814A>T|||||814|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*648T>A|||||648|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1232T>A|||||1232|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2158T>A|||||2158|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/2|c.222+46T>A||||||	GT:AD:DP:GQ:PL	1/1:0,40:40:96:1331,96,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	201215	.	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.70;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/3|c.113A>G|p.Glu38Gly|113/489|113/489|38/162||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-1390T>C|||||1390|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4973T>C|||||4973|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*969T>C|||||969|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*493A>G|||||493|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1077A>G|||||1077|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*2003A>G|||||2003|	GT:AD:DP:GQ:PL	1/1:0,34:34:84:1174,84,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	201222	.	A	G	1125.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.63;ReadPosRankSum=0.434;SOR=0.249;ANN=G|synonymous_variant|LOW|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/3|c.106T>C|p.Leu36Leu|106/489|106/489|36/162||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-1383A>G|||||1383|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_195346_195717|GENE_EXON_scaffold149725_cov62_195346_195717|transcript|Soaet10008643|protein_coding||c.*4980A>G|||||4980|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*976A>G|||||976|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*486T>C|||||486|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1070T>C|||||1070|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*1996T>C|||||1996|	GT:AD:DP:GQ:PL	1/1:1,31:32:84:1154,84,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	201264	.	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.08;SOR=0.880;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/3|c.64A>G|p.Ile22Val|64/489|64/489|22/162||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-1341T>C|||||1341|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*1018T>C|||||1018|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*444A>G|||||444|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1028A>G|||||1028|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*1954A>G|||||1954|	GT:AD:DP:GQ:PL	1/1:0,33:33:78:1054,78,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	201285	.	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.26;SOR=1.270;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding|1/3|c.43A>G|p.Lys15Glu|43/489|43/489|15/162||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-1320T>C|||||1320|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*1039T>C|||||1039|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.*423A>G|||||423|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*1007A>G|||||1007|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*1933A>G|||||1933|	GT:AD:DP:GQ:PL	1/1:0,37:37:81:1111,81,0	scaffold149725_cov62	GLEAN	mRNA	192961	201327	0.96	-	.	ID=Soaet10008641
scaffold149725_cov62	201755	.	T	C	853.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;SOR=0.693;ANN=C|missense_variant|MODERATE|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding|3/3|c.262A>G|p.Thr88Ala|262/309|262/309|88/102||,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-428A>G|||||428|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-850T>C|||||850|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*1509T>C|||||1509|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*537A>G|||||537|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*1463A>G|||||1463|	GT:AD:DP:GQ:PL	1/1:0,24:24:63:882,63,0	scaffold149725_cov62	GLEAN	mRNA	201708	202195	0.82	-	.	ID=Soaet10008645
scaffold149725_cov62	201795	.	T	G	974.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.61;SOR=0.906;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding|3/3|c.222A>C|p.Leu74Phe|222/309|222/309|74/102||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-468A>C|||||468|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-810T>G|||||810|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*1549T>G|||||1549|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*497A>C|||||497|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*1423A>C|||||1423|	GT:AD:DP:GQ:PL	1/1:0,29:29:72:1003,72,0	scaffold149725_cov62	GLEAN	mRNA	201708	202195	0.82	-	.	ID=Soaet10008645
scaffold149725_cov62	202028	.	C	A	1464.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.605;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=6.857;QD=31.84;ReadPosRankSum=-1.470;SOR=0.292;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding|2/3|c.106G>T|p.Asp36Tyr|106/309|106/309|36/102||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-701G>T|||||701|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.-577C>A|||||577|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*1782C>A|||||1782|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.*264G>T|||||264|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*1190G>T|||||1190|	GT:AD:DP:GQ:PL	1/1:1,45:46:77:1493,77,0	scaffold149725_cov62	GLEAN	mRNA	201708	202195	0.82	-	.	ID=Soaet10008645
scaffold149725_cov62	202642	.	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.81;SOR=0.850;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/6|c.38A>G|p.Lys13Arg|38/696|38/696|13/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1315T>C|||||1315|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-447T>C|||||447|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2396A>G|||||2396|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*576T>C|||||576|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|2/2|c.241-9T>C||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1386,102,0	scaffold149725_cov62	GLEAN	mRNA	202292	203136	1.00	-	.	ID=Soaet10008646
scaffold149725_cov62	202642	.	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.81;SOR=0.850;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/6|c.38A>G|p.Lys13Arg|38/696|38/696|13/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1315T>C|||||1315|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-447T>C|||||447|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2396A>G|||||2396|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*576T>C|||||576|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|2/2|c.241-9T>C||||||	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1386,102,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	202785	.	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.64;SOR=1.292;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|2/3|c.137T>C|p.Ile46Thr|137/582|137/582|46/193||,G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/6|c.181A>G|p.Met61Val|181/696|181/696|61/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1458T>C|||||1458|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-590T>C|||||590|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2539A>G|||||2539|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*433T>C|||||433|	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1374,99,0	scaffold149725_cov62	GLEAN	mRNA	202292	203136	1.00	-	.	ID=Soaet10008646
scaffold149725_cov62	202785	.	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.64;SOR=1.292;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|2/3|c.137T>C|p.Ile46Thr|137/582|137/582|46/193||,G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/6|c.181A>G|p.Met61Val|181/696|181/696|61/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1458T>C|||||1458|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-590T>C|||||590|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2539A>G|||||2539|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*433T>C|||||433|	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1374,99,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	202860	.	C	G	1273.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;SOR=1.418;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/6|c.256C>G|p.Pro86Ala|256/696|256/696|86/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1533G>C|||||1533|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-665G>C|||||665|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2614C>G|||||2614|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*358G>C|||||358|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|1/2|c.134-72G>C||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1302,93,0	scaffold149725_cov62	GLEAN	mRNA	202292	203136	1.00	-	.	ID=Soaet10008646
scaffold149725_cov62	202860	.	C	G	1273.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;SOR=1.418;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/6|c.256C>G|p.Pro86Ala|256/696|256/696|86/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1533G>C|||||1533|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-665G>C|||||665|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2614C>G|||||2614|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*358G>C|||||358|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|1/2|c.134-72G>C||||||	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1302,93,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	202955	.	C	A	860.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;SOR=0.765;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1628G>T|||||1628|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-760G>T|||||760|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2709C>A|||||2709|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*263G>T|||||263|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|1/2|c.133+49G>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/5|c.311+40C>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:889,63,0	scaffold149725_cov62	GLEAN	mRNA	202292	203136	1.00	-	.	ID=Soaet10008646
scaffold149725_cov62	202955	.	C	A	860.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;SOR=0.765;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1628G>T|||||1628|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-760G>T|||||760|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2709C>A|||||2709|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*263G>T|||||263|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|1/2|c.133+49G>T||||||,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|1/5|c.311+40C>A||||||	GT:AD:DP:GQ:PL	1/1:0,27:27:63:889,63,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	203048	.	A	G	981.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.75;SOR=0.752;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|1/3|c.89T>C|p.Val30Ala|89/582|89/582|30/193||,G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|2/6|c.322A>G|p.Thr108Ala|322/696|322/696|108/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1721T>C|||||1721|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-853T>C|||||853|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2802A>G|||||2802|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*170T>C|||||170|	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1010,72,0	scaffold149725_cov62	GLEAN	mRNA	202292	203136	1.00	-	.	ID=Soaet10008646
scaffold149725_cov62	203048	.	A	G	981.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.75;SOR=0.752;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding|1/3|c.89T>C|p.Val30Ala|89/582|89/582|30/193||,G|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|2/6|c.322A>G|p.Thr108Ala|322/696|322/696|108/231||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1721T>C|||||1721|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-853T>C|||||853|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2802A>G|||||2802|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*170T>C|||||170|	GT:AD:DP:GQ:PL	1/1:0,33:33:72:1010,72,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	203160	.	A	C	1191.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6635;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.36;SOR=0.798;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-1833T>G|||||1833|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-965T>G|||||965|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-24T>G|||||24|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*2914A>C|||||2914|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding||c.*58T>G|||||58|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|2/5|c.395+39A>C||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:87:1220,87,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	203598	.	A	G	1212.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.91;SOR=1.040;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|5/5|c.596+8A>G||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2271T>C|||||2271|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1403T>C|||||1403|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-462T>C|||||462|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3352A>G|||||3352|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|2/2|c.132+56T>C||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1241,90,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	203598	.	A	G	1212.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.91;SOR=1.040;ANN=G|splice_region_variant&intron_variant|LOW|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|5/5|c.596+8A>G||||||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2271T>C|||||2271|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1403T>C|||||1403|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-462T>C|||||462|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3352A>G|||||3352|,G|intron_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|2/2|c.132+56T>C||||||	GT:AD:DP:GQ:PL	1/1:0,38:38:90:1241,90,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149725_cov62	203656	.	C	T	899.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SOR=0.976;ANN=T|missense_variant&splice_region_variant|MODERATE|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|2/3|c.130G>A|p.Ala44Thr|130/429|130/429|44/142||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2329G>A|||||2329|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1461G>A|||||1461|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-520G>A|||||520|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3410C>T|||||3410|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|5/5|c.597-25C>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:66:928,66,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	203656	.	C	T	899.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SOR=0.976;ANN=T|missense_variant&splice_region_variant|MODERATE|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|2/3|c.130G>A|p.Ala44Thr|130/429|130/429|44/142||,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2329G>A|||||2329|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1461G>A|||||1461|,T|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-520G>A|||||520|,T|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3410C>T|||||3410|,T|intron_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|5/5|c.597-25C>T||||||	GT:AD:DP:GQ:PL	1/1:0,30:30:66:928,66,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149725_cov62	203695	.	C	A	763.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SOR=0.846;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|6/6|c.611C>A|p.Pro204His|611/696|611/696|204/231||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2368G>T|||||2368|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1500G>T|||||1500|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-559G>T|||||559|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3449C>A|||||3449|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|1/2|c.112-21G>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:792,57,0	scaffold149725_cov62	GLEAN	mRNA	202605	203780	0.17	+	.	ID=Soaet10008647
scaffold149725_cov62	203695	.	C	A	763.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SOR=0.846;ANN=A|missense_variant|MODERATE|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding|6/6|c.611C>A|p.Pro204His|611/696|611/696|204/231||,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2368G>T|||||2368|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1500G>T|||||1500|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-559G>T|||||559|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3449C>A|||||3449|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|1/2|c.112-21G>T||||||	GT:AD:DP:GQ:PL	1/1:0,26:26:57:792,57,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149725_cov62	203824	.	T	A	1104.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.49;SOR=0.811;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2497A>T|||||2497|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1629A>T|||||1629|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-688A>T|||||688|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3578T>A|||||3578|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.*44T>A|||||44|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|1/2|c.111+87A>T||||||	GT:AD:DP:GQ:PL	1/1:0,34:36:81:1133,81,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149725_cov62	203862	.	G	A	1249.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.78;SOR=0.859;ANN=A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2535C>T|||||2535|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1667C>T|||||1667|,A|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-726C>T|||||726|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3616G>A|||||3616|,A|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.*82G>A|||||82|,A|intron_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|1/2|c.111+49C>T||||||	GT:AD:DP:GQ:PL	1/1:0,37:37:90:1278,90,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149725_cov62	203896	.	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.04;SOR=0.741;ANN=C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2569A>G|||||2569|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1701A>G|||||1701|,C|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-760A>G|||||760|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3650T>C|||||3650|,C|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.*116T>C|||||116|,C|intron_variant|MODIFIER|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|1/2|c.111+15A>G||||||	GT:AD:DP:GQ:PL	1/1:0,41:41:93:1301,93,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149725_cov62	203957	.	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=1;QD=31.78;SOR=1.154;ANN=G|missense_variant|MODERATE|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|1/3|c.65T>C|p.Leu22Pro|65/429|65/429|22/142||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2630T>C|||||2630|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1762T>C|||||1762|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-821T>C|||||821|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3711A>G|||||3711|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.*177A>G|||||177|	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1490,105,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149725_cov62	203968	.	T	G	1367.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=1;QD=29.73;SOR=0.929;ANN=G|synonymous_variant|LOW|EXON_scaffold149725_cov62_203218_203514|GENE_EXON_scaffold149725_cov62_203218_203514|transcript|Soaet10008648|protein_coding|1/3|c.54A>C|p.Pro18Pro|54/429|54/429|18/142||,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_192961_193197|GENE_EXON_scaffold149725_cov62_192961_193197|transcript|Soaet10008641|protein_coding||c.-2641A>C|||||2641|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_201708_201888|GENE_EXON_scaffold149725_cov62_201708_201888|transcript|Soaet10008645|protein_coding||c.-1773A>C|||||1773|,G|upstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202292_202633|GENE_EXON_scaffold149725_cov62_202292_202633|transcript|Soaet10008646|protein_coding||c.-832A>C|||||832|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_199725_199732|GENE_EXON_scaffold149725_cov62_199725_199732|transcript|Soaet10008644|protein_coding||c.*3722T>G|||||3722|,G|downstream_gene_variant|MODIFIER|EXON_scaffold149725_cov62_202605_202915|GENE_EXON_scaffold149725_cov62_202605_202915|transcript|Soaet10008647|protein_coding||c.*188T>G|||||188|	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1396,99,0	scaffold149725_cov62	GLEAN	mRNA	203218	204021	0.96	-	.	ID=Soaet10008648
scaffold149739_cov63	45827	.	C	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.15;ReadPosRankSum=-0.869;SOR=1.270;ANN=A|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.250+123C>A||||||	GT:AD:DP:GQ:PL	0/1:8,11:19:99:335,0,137	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	46258	.	CAG	C	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.23;ReadPosRankSum=0.159;SOR=0.631;ANN=C|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.250+555_250+556delAG||||||	GT:AD:DP:GQ:PL	0/1:5,7:12:99:352,0,241	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	46537	.	G	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.112;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.131;SOR=0.184;ANN=T|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.250+833G>T||||||	GT:AD:DP:GQ:PL	0/1:5,15:20:99:347,0,132	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	46601	.	T	C	506.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.67;SOR=0.941;ANN=C|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.251-875T>C||||||	GT:AD:DP:GQ:PL	1/1:0,16:16:39:535,39,0	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	47183	.	TTACTAC	T	810.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;QD=28.95;RPA=9,7;RU=TAC;SOR=1.609;STR;ANN=T|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.251-292_251-287delTACTAC||||||	GT:AD:DP:GQ:PL	1/1:0,14:19:43:811,43,0	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	47207	.	C	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;DP=17;Dels=0.00;ExcessHet=3.0103;FS=8.141;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.93;ReadPosRankSum=-0.245;SOR=1.447;ANN=A|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.251-269C>A||||||	GT:AD:DP:GQ:PL	0/1:7,10:17:99:333,0,206	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	47210	.	C	A	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.40;ReadPosRankSum=-0.244;SOR=1.447;ANN=A|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.251-266C>A||||||	GT:AD:DP:GQ:PL	0/1:7,10:17:99:324,0,199	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	47318	.	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.81;ReadPosRankSum=0.527;SOR=0.437;ANN=G|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|1/4|c.251-158A>G||||||	GT:AD:DP:GQ:PL	0/1:12,5:17:99:161,0,323	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	48917	.	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.502;SOR=0.951;ANN=A|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|2/4|c.660+1032G>A||||||	GT:AD:DP:GQ:PL	0/1:17,10:27:99:165,0,468	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	49060	.	A	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-0.451;SOR=0.527;ANN=G|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|2/4|c.661-1069A>G||||||	GT:AD:DP:GQ:PL	0/1:8,7:15:99:239,0,256	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	50722	.	TTC	T	407.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.18;SOR=1.112;ANN=T|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|4/4|c.1063-14_1063-13delTC||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:43:445,43,0	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	50723	.	TC	T	367.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SOR=1.112;ANN=T|intron_variant|MODIFIER|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|4/4|c.1063-13delC||||||	GT:AD:DP:GQ:PL	1/1:0,15:15:44:405,44,0	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219
scaffold149739_cov63	50987	.	C	T	709.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.39;SOR=0.941;ANN=T|missense_variant|MODERATE|EXON_scaffold149739_cov63_45455_45704|GENE_EXON_scaffold149739_cov63_45455_45704|transcript|Soaet10008219|protein_coding|5/5|c.1313C>T|p.Pro438Leu|1313/1320|1313/1320|438/439||	GT:AD:DP:GQ:PL	1/1:0,25:25:51:738,51,0	scaffold149739_cov63	GLEAN	mRNA	45455	50994	0.73	+	.	ID=Soaet10008219