2014-06-03-75k3_7158_TATT.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	2014-06-03-75k3_7158_TATT.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43928742
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATAAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCG	916732	2.086861490365465	Illumina Paired End PCR Primer 2 (100% over 43bp)
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT	102456	0.2332322651078877	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGATCG	102275	38.28028	3
GATCGGA	102220	38.128036	5
AGCGGTT	103170	37.745277	14
TAAGATC	104380	37.650063	2
AATGCCG	102955	37.64444	28
ACCGATC	101285	37.5937	37
GACCGAT	101410	37.59267	36
AGATCGG	104245	37.51292	4
CGGTTCA	103415	37.50842	16
GAGCGGT	104405	37.369324	13
CGAGACC	102725	37.352203	33
GATCTCG	102870	37.331238	40
CCGATCT	102230	37.242275	38
AAGAGCG	105270	37.138767	11
GAGACCG	103160	37.086067	34
CCGAGAC	104460	37.061214	32
ATAAGAT	106285	37.04613	1
CGATCTC	103100	36.9959	39
ATCGGAA	105465	36.981014	6
AGAGCGG	105900	36.97533	12