2014-01-16-75k1_5985_CTTT.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	2014-01-16-75k1_5985_CTTT.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37478656
Sequences flagged as poor quality	0
Sequence length	46
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCG	1345189	3.5892135513077092	Illumina Paired End PCR Primer 2 (100% over 43bp)
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT	43660	0.11649297135948526	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCTCG	143285	38.518414	40
AGCGGTT	152475	37.8675	14
CGGTTCA	152445	37.811226	16
AATGCCG	152070	37.623383	28
GACCGAT	146755	37.603218	36
AAGAGCG	154015	37.601433	11
AGAGCGG	154280	37.531662	12
ACCGATC	147005	37.521584	37
GATCGGA	154900	37.45088	5
GAGCGGT	154500	37.41126	13
CGAGACC	148390	37.38298	33
GCGGTTC	154490	37.35916	15
GAGACCG	148440	37.297234	34
CCGATCT	147500	37.26472	38
CCGAGAC	149270	37.264175	32
TGCCGAG	153555	37.233337	30
CGATCTC	148140	37.196735	39
AGATCGG	156275	37.193382	4
AGACCGA	148770	37.186367	35
GCCGAGA	153810	37.18071	31